Query 037649
Match_columns 257
No_of_seqs 199 out of 2360
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:04:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 99.9 7.8E-26 1.7E-30 218.2 22.5 207 3-253 199-415 (455)
2 PRK10189 MATE family multidrug 99.9 2.5E-24 5.5E-29 208.6 21.6 173 52-256 256-436 (478)
3 PRK00187 multidrug efflux prot 99.9 9.5E-24 2E-28 203.4 22.5 174 52-257 233-419 (464)
4 PRK01766 multidrug efflux prot 99.9 1.1E-22 2.4E-27 194.1 22.7 173 52-256 236-416 (456)
5 PRK09575 vmrA multidrug efflux 99.9 4.8E-21 1E-25 183.8 20.4 171 52-254 231-410 (453)
6 KOG1347 Uncharacterized membra 99.9 6.8E-22 1.5E-26 192.1 8.7 177 51-257 243-427 (473)
7 PRK10367 DNA-damage-inducible 99.9 7.2E-20 1.6E-24 175.8 21.0 160 53-245 230-401 (441)
8 PRK10189 MATE family multidrug 99.8 4.2E-19 9.1E-24 172.2 22.9 171 53-256 27-211 (478)
9 PRK10367 DNA-damage-inducible 99.8 9.1E-19 2E-23 168.2 22.0 174 52-257 6-187 (441)
10 COG0534 NorM Na+-driven multid 99.8 1.2E-18 2.5E-23 168.4 21.3 173 52-257 14-196 (455)
11 PF01554 MatE: MatE; InterPro 99.8 5.4E-20 1.2E-24 150.8 8.1 155 62-248 4-162 (162)
12 PRK00187 multidrug efflux prot 99.8 3.5E-18 7.6E-23 164.7 21.8 167 52-252 7-181 (464)
13 PRK09575 vmrA multidrug efflux 99.8 3.7E-17 8E-22 157.0 20.4 172 53-257 10-190 (453)
14 PRK01766 multidrug efflux prot 99.7 5E-16 1.1E-20 148.3 22.3 168 52-252 9-184 (456)
15 TIGR00797 matE putative efflux 99.6 2.1E-13 4.6E-18 124.2 20.2 161 63-256 5-171 (342)
16 TIGR01695 mviN integral membra 99.6 4.8E-13 1E-17 128.3 20.9 170 52-254 220-402 (502)
17 TIGR02900 spore_V_B stage V sp 99.4 6.9E-11 1.5E-15 112.9 21.0 168 52-250 222-402 (488)
18 TIGR00797 matE putative efflux 99.3 5E-11 1.1E-15 108.6 14.6 121 52-204 213-341 (342)
19 PRK15099 O-antigen translocase 99.1 1E-08 2.2E-13 96.9 20.1 163 53-254 213-386 (416)
20 KOG1347 Uncharacterized membra 98.9 5.5E-08 1.2E-12 95.1 15.5 171 52-256 25-204 (473)
21 TIGR01695 mviN integral membra 98.9 2E-07 4.4E-12 89.4 19.1 157 55-244 4-169 (502)
22 TIGR02900 spore_V_B stage V sp 98.9 2.2E-07 4.7E-12 88.8 18.5 148 62-246 10-163 (488)
23 PF03023 MVIN: MviN-like prote 98.8 9.4E-07 2E-11 85.5 20.9 170 52-254 195-377 (451)
24 COG0728 MviN Uncharacterized m 98.4 4E-05 8.8E-10 75.9 20.2 112 143-255 297-412 (518)
25 PRK15099 O-antigen translocase 98.4 1.4E-05 3.1E-10 75.5 16.2 109 135-251 55-167 (416)
26 PRK10459 colanic acid exporter 98.3 8.4E-05 1.8E-09 71.7 19.3 163 53-251 205-376 (492)
27 COG2244 RfbX Membrane protein 98.3 0.00016 3.5E-09 69.2 20.5 168 52-254 210-386 (480)
28 PF03023 MVIN: MviN-like prote 97.8 0.0012 2.7E-08 63.9 16.7 114 124-238 17-138 (451)
29 COG0728 MviN Uncharacterized m 94.9 3.3 7.2E-05 41.5 18.6 151 55-236 11-171 (518)
30 PRK10459 colanic acid exporter 94.0 2.9 6.3E-05 40.3 15.8 104 135-249 59-162 (492)
31 PF14667 Polysacc_synt_C: Poly 93.6 0.25 5.5E-06 39.4 6.5 54 201-255 2-55 (146)
32 PF01943 Polysacc_synt: Polysa 93.5 4.3 9.3E-05 34.7 18.1 106 124-238 41-149 (273)
33 PF13440 Polysacc_synt_3: Poly 93.5 4.3 9.4E-05 34.6 17.7 104 125-238 27-131 (251)
34 PF07260 ANKH: Progressive ank 93.1 7.4 0.00016 36.9 16.1 44 185-228 116-159 (345)
35 COG2244 RfbX Membrane protein 87.4 27 0.00059 33.3 15.9 101 124-235 48-154 (480)
36 PF04506 Rft-1: Rft protein; 87.2 14 0.00031 37.2 13.3 104 152-256 339-444 (549)
37 KOG2864 Nuclear division RFT1 75.7 9.1 0.0002 38.0 6.9 113 143-255 307-424 (530)
38 PF04505 Dispanin: Interferon- 61.1 46 0.001 24.9 6.7 28 143-170 45-72 (82)
39 PF02322 Cyto_ox_2: Cytochrome 37.6 3.5E+02 0.0076 25.3 17.9 41 2-42 71-113 (328)
40 PF01943 Polysacc_synt: Polysa 35.8 2.7E+02 0.0058 23.4 8.9 41 52-93 202-246 (273)
41 PRK10484 putative transporter; 32.3 4.1E+02 0.009 26.2 10.2 28 143-170 265-292 (523)
42 PRK09442 panF sodium/panthothe 27.4 5.8E+02 0.013 24.8 12.1 60 143-202 258-317 (483)
43 TIGR02119 panF sodium/pantothe 23.3 6.8E+02 0.015 24.1 11.5 34 143-176 257-290 (471)
44 COG1738 yhhQ Uncharacterized m 23.0 3.9E+02 0.0086 24.0 7.4 33 143-178 73-105 (233)
45 COG3462 Predicted membrane pro 20.5 2.7E+02 0.0058 22.4 5.1 45 116-160 48-96 (117)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.94 E-value=7.8e-26 Score=218.24 Aligned_cols=207 Identities=22% Similarity=0.299 Sum_probs=178.1
Q ss_pred chHhHHhcCCChH-HHHHHHHHHhhHHhhc-cccccchhhhhhhhhchhhHhhHHHHHHHH----HHHHHHHHHHHHHHH
Q 037649 3 ATANRILSGLPSD-VIEEYLGRQRMAFRWW-PRLFGWEWRLLCSFQGLVFAVSIFNYMLTF----VTLILEIWFNQGLAP 76 (257)
Q Consensus 3 ~~~at~~s~~~~~-~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~----~~~~le~~~~~i~~~ 76 (257)
|++||++||...+ +...|+.+....+... ++..+++|+. +|+++|+| ++...|...+...+.
T Consensus 199 AA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~i~~lG~p~~~~~~~~~~~~~~~~~ 266 (455)
T COG0534 199 AALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKL------------LKEILRLGLPIFLESLSESLGFLLLTL 266 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHH------------HHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 6899999996666 4444444443211121 2223455543 57899999 444556666777888
Q ss_pred HHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH----HHHhccCChH
Q 037649 77 ISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAAA----SNELGAAHPK 152 (257)
Q Consensus 77 ~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~gls~a~----g~~lGa~~~~ 152 (257)
+.+++|+ .++||+++ ..++.++.+++..|++.|+ ||++||||+|
T Consensus 267 ~~~~~G~--~~lAa~~i------------------------------~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~ 314 (455)
T COG0534 267 FVARLGT--VALAAYGI------------------------------ALRIASFIFMPPFGIAQAVTILVGQNLGAGNYK 314 (455)
T ss_pred HHHhcCh--HHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 9999994 46899999 8999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHHH
Q 037649 153 AAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAY 232 (257)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~ 232 (257)
++|+..+.+...+..++.+.+.+.+++++++.++|++|+|+.+.+.+++++.+..+++++.+.+.+|++||.||++.+++
T Consensus 315 ~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~ 394 (455)
T COG0534 315 RARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFI 394 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHhhc
Q 037649 233 VNLACYYIMGLPMGCLLGFKT 253 (257)
Q Consensus 233 i~l~~~~~i~lPl~~ll~~~~ 253 (257)
+++.++|++++|++|++++.+
T Consensus 395 ~~~~~~~~~~lp~~~~l~~~~ 415 (455)
T COG0534 395 ISLLSYWGFRLPLAYLLGFFF 415 (455)
T ss_pred HHHHHHHHHHHhHHHHHhhhc
Confidence 999999999999999999973
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.93 E-value=2.5e-24 Score=208.61 Aligned_cols=173 Identities=14% Similarity=0.050 Sum_probs=160.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649 52 VSIFNYMLTFVTLILEIWFNQGL----APISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY 127 (257)
Q Consensus 52 ~~~~~~l~l~~~~~le~~~~~i~----~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 127 (257)
+.+|+++|+|.|..+|...++.. +.+.+++|+ .++||+++ ..++
T Consensus 256 ~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~--~~~Aa~~I------------------------------~~~i 303 (478)
T PRK10189 256 AIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGT--SVIAGNFI------------------------------AFSI 303 (478)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHH------------------------------HHHH
Confidence 45789999998888887776654 446677885 46899999 8899
Q ss_pred HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649 128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS 203 (257)
Q Consensus 128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i 203 (257)
.++.+++..|++.|+ ||++||||+|++|+..+.+...+..++++.+++++++++++.++|++|+|+++.+..++++
T Consensus 304 ~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~ 383 (478)
T PRK10189 304 AALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWL 383 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999988 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCCC
Q 037649 204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLD 256 (257)
Q Consensus 204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~lG 256 (257)
.+..+++++.+.+..+++||.||++.++++++.++|++++|++|++++.+++|
T Consensus 384 ~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g 436 (478)
T PRK10189 384 NALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFG 436 (478)
T ss_pred HHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999887776
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.92 E-value=9.5e-24 Score=203.37 Aligned_cols=174 Identities=21% Similarity=0.267 Sum_probs=159.0
Q ss_pred hhHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649 52 VSIFNYMLTFVTLI----LEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY 127 (257)
Q Consensus 52 ~~~~~~l~l~~~~~----le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 127 (257)
+.+|+++|+++|.. +|...+.+++.+++++|+. ++||+++ ..++
T Consensus 233 ~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~--alAa~~i------------------------------~~~i 280 (464)
T PRK00187 233 AALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGST--QLAAHQI------------------------------ALQI 280 (464)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHH------------------------------HHHH
Confidence 34688999995554 4677778889999999964 6899999 7889
Q ss_pred HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC--CH---HHHHHHH
Q 037649 128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFAS--DS---EVVQAVS 198 (257)
Q Consensus 128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~--d~---~v~~~~~ 198 (257)
..+.+.+..|++.++ ||++||||+|++|+..+.+..++..++++.+++++++++++.++|++ |+ |+++.+.
T Consensus 281 ~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~ 360 (464)
T PRK00187 281 VSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAV 360 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 999999999999887 99999999999999999999999999999999999999999999974 44 7999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCCCC
Q 037649 199 NLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLDS 257 (257)
Q Consensus 199 ~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~lG~ 257 (257)
+++++.+.+.++++++.+..+++||.||++.+++++++++|++++|++|++.+++++|.
T Consensus 361 ~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~ 419 (464)
T PRK00187 361 SLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGA 419 (464)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999888773
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.91 E-value=1.1e-22 Score=194.10 Aligned_cols=173 Identities=20% Similarity=0.314 Sum_probs=158.0
Q ss_pred hhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649 52 VSIFNYMLTFVTL----ILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY 127 (257)
Q Consensus 52 ~~~~~~l~l~~~~----~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 127 (257)
+.+|+++++++|. ..|...+.++..+++++|+. ++|++++ ..++
T Consensus 236 ~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i------------------------------~~~i 283 (456)
T PRK01766 236 AVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTV--TVAAHQI------------------------------ALNF 283 (456)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHH------------------------------HHHH
Confidence 4478899999554 45555566778888999954 5899999 7788
Q ss_pred HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649 128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS 203 (257)
Q Consensus 128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i 203 (257)
.++.+.+..|++.++ ||++|+||+|++|+..+.+..++..++++.+++++.+++++.++|++|+|+.+.+.+++++
T Consensus 284 ~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~ 363 (456)
T PRK01766 284 SSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLF 363 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999998887 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCCC
Q 037649 204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLD 256 (257)
Q Consensus 204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~lG 256 (257)
..++.++++++.+.++++||.||++.++++++++.|++++|.+|++.+..++|
T Consensus 364 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G 416 (456)
T PRK01766 364 AALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMG 416 (456)
T ss_pred HHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999887776
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.87 E-value=4.8e-21 Score=183.82 Aligned_cols=171 Identities=12% Similarity=0.128 Sum_probs=151.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649 52 VSIFNYMLTFVTLILEIWFNQGLA----PISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY 127 (257)
Q Consensus 52 ~~~~~~l~l~~~~~le~~~~~i~~----~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 127 (257)
+.+|+++++|.|..+|...+.... .+.+++|+. .++|++++ ..++
T Consensus 231 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~-~~lAa~~i------------------------------~~~i 279 (453)
T PRK09575 231 SLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSA-LTVGAYAI------------------------------VGYL 279 (453)
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCch-HHHHHHHH------------------------------HHHH
Confidence 346889999988887776655543 445566753 35899999 7889
Q ss_pred HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC-CHHHHHHHHHHHH
Q 037649 128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFAS-DSEVVQAVSNLIP 202 (257)
Q Consensus 128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~-d~~v~~~~~~~l~ 202 (257)
..+.+.+..|++.++ ||++||||+||+|+..+.+..+++..+++.++++..+++++.++|++ |||+++.+.++++
T Consensus 280 ~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~ 359 (453)
T PRK09575 280 MVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIR 359 (453)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHH
Confidence 999999999999987 99999999999999999999999999999999999999999999995 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcC
Q 037649 203 SLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTS 254 (257)
Q Consensus 203 i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~ 254 (257)
+.+.++++++++.+..+++||.||++.++..++.+. ++++|.+|++...+|
T Consensus 360 i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~~ll~~~~G 410 (453)
T PRK09575 360 LHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFLFILPKWLG 410 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999998764 789999999987544
No 6
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.86 E-value=6.8e-22 Score=192.13 Aligned_cols=177 Identities=38% Similarity=0.579 Sum_probs=170.3
Q ss_pred HhhHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHH
Q 037649 51 AVSIFNYMLTF----VTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMN 126 (257)
Q Consensus 51 ~~~~~~~l~l~----~~~~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 126 (257)
+++|+++++++ ++.|+|+|.+++..+..|.++|+++.+++.+| .++
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI------------------------------~~~ 292 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSI------------------------------CLE 292 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHH------------------------------HHH
Confidence 46799999999 78899999999999999999999999999999 788
Q ss_pred HHHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHH
Q 037649 127 YLNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIP 202 (257)
Q Consensus 127 ~~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~ 202 (257)
+..+.++...|++.++ +|++|++|+++||.....+...++.++...+..++.+++.+..+|++|+|+.+.+.+..+
T Consensus 293 ~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~p 372 (473)
T KOG1347|consen 293 IGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTP 372 (473)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCCCC
Q 037649 203 SLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLDS 257 (257)
Q Consensus 203 i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~lG~ 257 (257)
+.+...++++.|.+..|+.||.|+|+..+++|+.++|++|+|++..++|.+++|+
T Consensus 373 ll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~ 427 (473)
T KOG1347|consen 373 LLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGV 427 (473)
T ss_pred HHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCc
Confidence 9999999999999999999999999999999999999999999999999988874
No 7
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.85 E-value=7.2e-20 Score=175.80 Aligned_cols=160 Identities=13% Similarity=0.082 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHH
Q 037649 53 SIFNYMLTFVTL----ILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYL 128 (257)
Q Consensus 53 ~~~~~l~l~~~~----~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 128 (257)
.+|+++|++.|. ..+...+.+.+.+++++|+. ++||+++ ..++.
T Consensus 230 ~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~--alAa~~I------------------------------~~~i~ 277 (441)
T PRK10367 230 NFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSD--IIAVNAV------------------------------LMTLL 277 (441)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHH------------------------------HHHHH
Confidence 368889988444 45566677788999999954 6899999 88999
Q ss_pred HHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHH
Q 037649 129 NWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSL 204 (257)
Q Consensus 129 ~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~ 204 (257)
++.+++..|++.|+ ||++||||+|++|+..+.+..++.+++.+.+++++.+++++.++|++|+|+++.+.+++++.
T Consensus 278 ~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~ 357 (441)
T PRK10367 278 TFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQ 357 (441)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 99999999999998 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHH----HHHHHhHhcCchhHHHHHHHHHHHHhHHHH
Q 037649 205 AISVFLNGIQP----ILSGVAIGSGWQAIVAYVNLACYYIMGLPM 245 (257)
Q Consensus 205 ~~~~~~~~~~~----~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl 245 (257)
+...+....+. +.+|.+||. |++.++.++++++|+..++.
T Consensus 358 ~~~~~~~~~~~~~~~~~~g~lrg~-dt~~~~~~~~~~~~~~~~~~ 401 (441)
T PRK10367 358 VILPLVGVWCYLLDGMFIGATRAA-EMRNSMAVAAAGFALTLLTL 401 (441)
T ss_pred HHHHHHHHHHHHHHHHhhCccchH-HHHHHHHHHHHHHHHHHHHH
Confidence 86544332333 356666665 79999999999999644443
No 8
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.84 E-value=4.2e-19 Score=172.21 Aligned_cols=171 Identities=14% Similarity=0.121 Sum_probs=152.8
Q ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHH
Q 037649 53 SIFNYMLTFVTLILE----IWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYL 128 (257)
Q Consensus 53 ~~~~~l~l~~~~~le----~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 128 (257)
.+|+++++++|..++ .....+++.++|++|+ .++||+++ ..++.
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~--~alAA~~i------------------------------~~~i~ 74 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGK--EAMAGVGL------------------------------ADSFN 74 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHH------------------------------HHHHH
Confidence 368899999666554 4456678899999995 46899999 77888
Q ss_pred HHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC--CCHHHHHHHHHHHH
Q 037649 129 NWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFA--SDSEVVQAVSNLIP 202 (257)
Q Consensus 129 ~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft--~d~~v~~~~~~~l~ 202 (257)
.+.+.+..|++.++ ||++|+||+|++++..+.+..+++.++++.+++.+++++++..+|+ .|+|+.+.+.+|++
T Consensus 75 ~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~ 154 (478)
T PRK10189 75 MVIMAFFAAIDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLE 154 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 88888888888776 9999999999999999999999999999999999999999999995 79999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhc----CCC
Q 037649 203 SLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKT----SLD 256 (257)
Q Consensus 203 i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~----~lG 256 (257)
+..++.++.+++.++++++||.||++.++++++++. ++++|+++++.+.+ +||
T Consensus 155 i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~~-~~ni~l~~~li~g~~~~~~lG 211 (478)
T PRK10189 155 LTVWSYPAAAITLIGSGALRGAGNTKIPLLINGGMN-ILNIIISSILIYGLFSWQGLG 211 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHHHH-HHHHHHhHHHHhcCCCCCccc
Confidence 999999999999999999999999999999999865 89999999999864 566
No 9
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.83 E-value=9.1e-19 Score=168.19 Aligned_cols=174 Identities=11% Similarity=0.069 Sum_probs=153.6
Q ss_pred hhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649 52 VSIFNYMLTFVTL----ILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY 127 (257)
Q Consensus 52 ~~~~~~l~l~~~~----~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 127 (257)
++.|++++++.|. .++.....+|+.++|++|+ +.++||+++ ..++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l------------------------------~~~i 54 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAV------------------------------GATA 54 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHH------------------------------HHHH
Confidence 4568899999555 4555667788999999853 335889999 6677
Q ss_pred HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649 128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS 203 (257)
Q Consensus 128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i 203 (257)
.++.+.+..|++.++ ||++||||+|++++..+.++.+++.++++...+...+.+++.++++.|+|+.+.+.+|+++
T Consensus 55 ~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i 134 (441)
T PRK10367 55 TSFLFMLLLFLRMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEI 134 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 777777777777665 9999999999999999999999999999999888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCCCC
Q 037649 204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLDS 257 (257)
Q Consensus 204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~lG~ 257 (257)
..++.++..+..++++++||.||++.++++++++. +++++++|++.+.++||.
T Consensus 135 ~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ii~~-~vni~l~~~lI~~~~lGv 187 (441)
T PRK10367 135 RWLSAPASLANLVLLGWLLGVQYARAPVILLVVGN-ILNIVLDLWLVMGLHMNV 187 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH-HHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999997 889999999999888874
No 10
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.82 E-value=1.2e-18 Score=168.41 Aligned_cols=173 Identities=17% Similarity=0.234 Sum_probs=157.2
Q ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649 52 VSIFNYMLTFVTLIL----EIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY 127 (257)
Q Consensus 52 ~~~~~~l~l~~~~~l----e~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 127 (257)
+..|.++++++|+.+ +.....+|++++|+++ +.++||+++ ..++
T Consensus 14 ~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~l------------------------------a~~i 61 (455)
T COG0534 14 KILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGL------------------------------ANPI 61 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHH------------------------------HHHH
Confidence 357889999966654 4556778999999999 457899999 6777
Q ss_pred HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649 128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS 203 (257)
Q Consensus 128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i 203 (257)
..+.+.+..|++.++ +|++||||++++|+..+.+...++.+++...++.+.+.+++..+++.++|+.+.+.+|+++
T Consensus 62 ~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i 141 (455)
T COG0534 62 FFLIIAIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRI 141 (455)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHH
Confidence 888888888888776 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhh-cC-CCC
Q 037649 204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFK-TS-LDS 257 (257)
Q Consensus 204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~-~~-lG~ 257 (257)
..++.++..+..++.+.+||.||+|.+|++++++. +.++.++|++.+. ++ ||+
T Consensus 142 ~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~-~lNivln~llI~g~~g~lGv 196 (455)
T COG0534 142 ILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGN-LLNIVLNYLLIFGLFGGLGV 196 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHHHhhHHHHHhccccccc
Confidence 99999999999999999999999999999999999 8999999999999 57 764
No 11
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.81 E-value=5.4e-20 Score=150.76 Aligned_cols=155 Identities=23% Similarity=0.332 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 037649 62 VTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAA 141 (257)
Q Consensus 62 ~~~~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~gls~a 141 (257)
++..++...+.+++.+.+++|+. +++++++ ..++.++...+..|++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~g~~--~~a~~~i------------------------------~~~~~~~~~~~~~g~~~a 51 (162)
T PF01554_consen 4 LMQLLQVLGFIIDTIFVGRLGPE--ALAAYGI------------------------------ASSIFSILFMLIFGLATA 51 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCCTTC--CCCHCCH------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHH--HHHHHHH------------------------------HHHHHHHHhhhccccccc
Confidence 56678888899999999999754 5899999 778889999999999988
Q ss_pred H----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649 142 A----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPIL 217 (257)
Q Consensus 142 ~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~~~~~~~~~~~~~~ 217 (257)
. ||++|++|+|++|+..+.+..++..++++.+++.+.+++++..+|++|+|+.+.+.+|+++..+..++..++...
T Consensus 52 ~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (162)
T PF01554_consen 52 LQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVF 131 (162)
T ss_dssp HHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHH
Confidence 8 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCchhHHHHHHHHHHHHhHHHHHHH
Q 037649 218 SGVAIGSGWQAIVAYVNLACYYIMGLPMGCL 248 (257)
Q Consensus 218 ~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~l 248 (257)
+++++|.||++.+++.++++.|++++|++|+
T Consensus 132 ~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 132 SGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp CCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 9999999999999999999999999999985
No 12
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.81 E-value=3.5e-18 Score=164.74 Aligned_cols=167 Identities=15% Similarity=0.024 Sum_probs=148.0
Q ss_pred hhHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649 52 VSIFNYMLTFVTLI----LEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY 127 (257)
Q Consensus 52 ~~~~~~l~l~~~~~----le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 127 (257)
+.+|+++++++|.. .+.....+|+.++|++|+ .++||+++ ..++
T Consensus 7 ~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~--~alAa~~i------------------------------~~~i 54 (464)
T PRK00187 7 TELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGP--EALAGGGL------------------------------GAAS 54 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH--HHHHHHHH------------------------------HHHH
Confidence 34788999995554 555667788999999985 46899999 6778
Q ss_pred HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649 128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS 203 (257)
Q Consensus 128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i 203 (257)
.++...+..|++.++ ||++||||+|++|+..+.+..++++++++..++.+ +.+++..+|+.|||+.+.+.+|+++
T Consensus 55 ~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i 133 (464)
T PRK00187 55 YSFVSIFCVGVIAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHL 133 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 888888888888776 99999999999999999999999999998877765 6689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhh
Q 037649 204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFK 252 (257)
Q Consensus 204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~ 252 (257)
..++.++..+...+++++||.||++.++++++++. ++++|++|++.|.
T Consensus 134 ~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~~~~~lIfg 181 (464)
T PRK00187 134 LPFALPGYLSFMALRGFTSALGRAGPVMVISLAGA-VANLLLNYALIEG 181 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 99999999999999999999999999999999998 6799999999875
No 13
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.77 E-value=3.7e-17 Score=156.97 Aligned_cols=172 Identities=9% Similarity=0.015 Sum_probs=151.5
Q ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHhcC-CchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649 53 SIFNYMLTFVTLILE----IWFNQGLAPISGLL-PNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY 127 (257)
Q Consensus 53 ~~~~~l~l~~~~~le----~~~~~i~~~~~g~l-g~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 127 (257)
.+|+++++++|..++ .....+|+.+.|++ |+ .+++++++ ..++
T Consensus 10 ~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~--~~laa~~~------------------------------~~~~ 57 (453)
T PRK09575 10 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGA--EGLAGINM------------------------------AWPV 57 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH--HHHHHHHH------------------------------HHHH
Confidence 368899999665554 46677899999996 74 35788888 5667
Q ss_pred HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649 128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS 203 (257)
Q Consensus 128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i 203 (257)
..+...+..+++.++ ||++|+||+|++++..+.+..++..++++..++...+.+++..+|+.|+|+.+.+.+|+++
T Consensus 58 ~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i 137 (453)
T PRK09575 58 IGIILGIGLMVGMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQV 137 (453)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Confidence 777777766666554 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCCCC
Q 037649 204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLDS 257 (257)
Q Consensus 204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~lG~ 257 (257)
..++.++..+.....+++|+.||++.++..++++. ++++|+++++.+.+++|.
T Consensus 138 ~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~li~~~~~Gi 190 (453)
T PRK09575 138 LIWGCLFTLGAIALPFLLRNDESPNLATGLMVIGA-LINIVLDYLFIGWLDWGL 190 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH-HHHHHhhHHHHHhCCchh
Confidence 99999999999999999999999999999999996 899999999999888773
No 14
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.73 E-value=5e-16 Score=148.34 Aligned_cols=168 Identities=13% Similarity=0.087 Sum_probs=147.6
Q ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649 52 VSIFNYMLTFVTLIL----EIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY 127 (257)
Q Consensus 52 ~~~~~~l~l~~~~~l----e~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 127 (257)
+.+|+++++++|..+ +.....+|+.+++++|+. +++++++ ..++
T Consensus 9 ~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~--~laa~~~------------------------------~~~~ 56 (456)
T PRK01766 9 SEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSAT--DLAAVAI------------------------------GTSI 56 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHHHH------------------------------HHHH
Confidence 447889999955544 455567789999999854 5788888 5566
Q ss_pred HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649 128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS 203 (257)
Q Consensus 128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i 203 (257)
......+..|++.+. ||++|++|+|++|+..+.+..+++.++++..++.+++++++.++|+.|+|+.+.+.+|+++
T Consensus 57 ~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i 136 (456)
T PRK01766 57 WLPVILFGHGLLLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHA 136 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 666667777777665 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhh
Q 037649 204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFK 252 (257)
Q Consensus 204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~ 252 (257)
.+++.++..+..++.+++||.||++.+++.++++. ++++++++++.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~-ivni~l~~~li~~ 184 (456)
T PRK01766 137 LLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGFLGL-LINIPLNYIFIYG 184 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 99999999999999999999999999999999997 7899999998864
No 15
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.58 E-value=2.1e-13 Score=124.16 Aligned_cols=161 Identities=18% Similarity=0.213 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 037649 63 TLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVMLGLSAAA 142 (257)
Q Consensus 63 ~~~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~gls~a~ 142 (257)
....+.....+++.+.+++|+. +++++++ +.++..+...+..|++.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~------------------------------a~~i~~~~~~~~~~i~~~~ 52 (342)
T TIGR00797 5 ANILQPLLGLVDTAFVGHLGPV--DLAAVSL------------------------------GSSVFMFLFSILMGLGTAT 52 (342)
T ss_pred HHHHHHHHHHHHHHHHhcccHH--HHHHHHH------------------------------hHHHHHHHHHHHHHHHHhH
Confidence 4455566677899999999954 4678787 6677777888888888887
Q ss_pred ----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649 143 ----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILS 218 (257)
Q Consensus 143 ----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~ 218 (257)
++++|++|+|++++..+.+......++++.+++.+.+++++..+|+.|+|..+.+.+++++.+++.++.+++.+..
T Consensus 53 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~ 132 (342)
T TIGR00797 53 TALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLR 132 (342)
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHh-hcC-CC
Q 037649 219 GVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGF-KTS-LD 256 (257)
Q Consensus 219 gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~-~~~-lG 256 (257)
+++||.||.+.+++.++++. ++.++.++++.+ .++ +|
T Consensus 133 ~~l~~~~~~~~~~~~~i~~~-~~~i~~~~~li~~~~g~~g 171 (342)
T TIGR00797 133 GFLRGQGDTKTPMYITLIGN-VINIILNYILIFGKFGFLG 171 (342)
T ss_pred HHHHhcCCchHHHHHHHHHH-HHHHHHhHHHHhcCccccc
Confidence 99999999999999999887 789999998887 566 54
No 16
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.56 E-value=4.8e-13 Score=128.31 Aligned_cols=170 Identities=9% Similarity=0.044 Sum_probs=140.3
Q ss_pred hhHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649 52 VSIFNYMLTFVTLI----LEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY 127 (257)
Q Consensus 52 ~~~~~~l~l~~~~~----le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 127 (257)
+.+|++++.+.+.. .+.....++..+.+.+|+. ++++++. +.++
T Consensus 220 ~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~--~v~~~~~------------------------------a~~l 267 (502)
T TIGR01695 220 PGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIG--SVSALYY------------------------------ANRI 267 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--hHHHHHH------------------------------HHHH
Confidence 34688999886555 4455566777776667754 3566666 5555
Q ss_pred HHHHHH-HHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC----CHHHHHHHH
Q 037649 128 LNWDIN-VMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFAS----DSEVVQAVS 198 (257)
Q Consensus 128 ~~~~~~-~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~----d~~v~~~~~ 198 (257)
..+... +..+++.+. ||+.|++|+|++|+..+.+......++...++.+..+++++..+|.+ |+|..+.+.
T Consensus 268 ~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~ 347 (502)
T TIGR01695 268 YQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTA 347 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 555443 445666665 99999999999999999999999999999999999999999998865 678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcC
Q 037649 199 NLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTS 254 (257)
Q Consensus 199 ~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~ 254 (257)
+++++.++..++.+++.+..+++++.||++.+++.++++. ++++|+++++...+|
T Consensus 348 ~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i~l~~~l~~~~G 402 (502)
T TIGR01695 348 TILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNALLSLLLIFPLG 402 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987 789999999876554
No 17
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.38 E-value=6.9e-11 Score=112.87 Aligned_cols=168 Identities=15% Similarity=0.120 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCch-----hhhhhheeecccccchhhhhhccchhhHHHHHHHHhHh
Q 037649 52 VSIFNYMLTFVTLILE----IWFNQGLAPISGLLPNP-----TILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFIN 122 (257)
Q Consensus 52 ~~~~~~l~l~~~~~le----~~~~~i~~~~~g~lg~~-----~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 122 (257)
+.+|++++.+.+..++ .....+|+.+.++...+ +.+.+.++. ++ +
T Consensus 222 ~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~------------------~~--------~ 275 (488)
T TIGR02900 222 ALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGK------------------LS--------G 275 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH------------------HH--------C
Confidence 4578899999666554 44456777777753211 111122221 00 0
Q ss_pred hHHHHHHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHH
Q 037649 123 FIMNYLNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVS 198 (257)
Q Consensus 123 ~~~~~~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~ 198 (257)
...++..+...+..+++.+. +++.|++|+|++|+..+....++..++....+.+..+++++..+|.++++ +.
T Consensus 276 ~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~ 351 (488)
T TIGR02900 276 MAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AG 351 (488)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hH
Confidence 02344445555566666665 99999999999999999999999999999999999999999998876654 46
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHH
Q 037649 199 NLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLG 250 (257)
Q Consensus 199 ~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~ 250 (257)
+++++.++..+++.++....+++++.||+|.+++.+.++. ++++|+.+++.
T Consensus 352 ~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~i~l~~~l~ 402 (488)
T TIGR02900 352 NFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-IVKIILLFVLT 402 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-HHHHHHHHHHH
Confidence 7899999999999999999999999999999999999998 79999999887
No 18
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.31 E-value=5e-11 Score=108.57 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649 52 VSIFNYMLTFVTL----ILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY 127 (257)
Q Consensus 52 ~~~~~~l~l~~~~----~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 127 (257)
+.+|++++.+.|. ..+.....++..+.+++|++ +++++++ ..++
T Consensus 213 ~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~--~v~~~~~------------------------------a~~~ 260 (342)
T TIGR00797 213 EVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSI--ALAAHQI------------------------------ALNV 260 (342)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcH--HHHHHHH------------------------------HHHH
Confidence 4578899999444 44555567778888888854 4678888 5677
Q ss_pred HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649 128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS 203 (257)
Q Consensus 128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i 203 (257)
.++...+..+++.+. ++++|++|.|++|+..+.+......+++...+.+.++++++.++|++|||+.+.+..++++
T Consensus 261 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 340 (342)
T TIGR00797 261 ESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIF 340 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 777788888888877 9999999999999999999999999999999999999999999999999999999999987
Q ss_pred H
Q 037649 204 L 204 (257)
Q Consensus 204 ~ 204 (257)
.
T Consensus 341 ~ 341 (342)
T TIGR00797 341 V 341 (342)
T ss_pred h
Confidence 5
No 19
>PRK15099 O-antigen translocase; Provisional
Probab=99.11 E-value=1e-08 Score=96.91 Aligned_cols=163 Identities=6% Similarity=-0.099 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHh-cCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649 53 SIFNYMLTFVTLILEIWF----NQGLAPISG-LLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY 127 (257)
Q Consensus 53 ~~~~~l~l~~~~~le~~~----~~i~~~~~g-~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 127 (257)
.+|++++.|.+...+... ...+..+.+ .+|+. +++.+++ +.++
T Consensus 213 ~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~--~vg~y~~------------------------------a~~i 260 (416)
T PRK15099 213 LAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWD--EVGIWQG------------------------------VSSI 260 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH--HhhHHHH------------------------------HHHH
Confidence 368899999776555433 445556665 67743 5788877 6677
Q ss_pred HH-HHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCH-HHHHHHHHHH
Q 037649 128 LN-WDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDS-EVVQAVSNLI 201 (257)
Q Consensus 128 ~~-~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~-~v~~~~~~~l 201 (257)
.. +...+..+++++. +++ +|+||+++..+........++...++..+++++++.++|.+|+ +- +.+++
T Consensus 261 ~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~---~~~~~ 334 (416)
T PRK15099 261 SDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTA---MRDLF 334 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH---HHHHH
Confidence 55 4577888888887 764 7889999999999999999999999988999999999998765 31 45577
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcC
Q 037649 202 PSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTS 254 (257)
Q Consensus 202 ~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~ 254 (257)
++.++..++..........+-..++++..+...+.. .++.+|+.+++...+|
T Consensus 335 ~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~~G 386 (416)
T PRK15099 335 AWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPLHG 386 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 777777777666665555555666777666666554 4889999999887654
No 20
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.88 E-value=5.5e-08 Score=95.14 Aligned_cols=171 Identities=14% Similarity=0.131 Sum_probs=144.4
Q ss_pred hhHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649 52 VSIFNYMLTFVT----LILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY 127 (257)
Q Consensus 52 ~~~~~~l~l~~~----~~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 127 (257)
++.|++.+++.| ...+.....+...+.|++|+.+ +|+.++ ..+.
T Consensus 25 ~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~le--Laa~sl------------------------------a~s~ 72 (473)
T KOG1347|consen 25 TESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLE--LASVSL------------------------------ANSF 72 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchH--HHHHHH------------------------------HHHh
Confidence 446778888844 4556666777889999999765 677676 2222
Q ss_pred -HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHH
Q 037649 128 -LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIP 202 (257)
Q Consensus 128 -~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~ 202 (257)
....+.+..|++.+. ||++|+++++......+.+...-...++..+.+ +.+.+++...++.|+++...+..|.+
T Consensus 73 ~n~~~~s~~~gl~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~ 151 (473)
T KOG1347|consen 73 ANITGVSILLGLQLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAF 151 (473)
T ss_pred hcccchHHhhccchhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHh
Confidence 224566777787777 999999999999999999998888888877665 56669999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCCC
Q 037649 203 SLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSLD 256 (257)
Q Consensus 203 i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~lG 256 (257)
+..+..+.......++..++++++.....++..++. ++++|+.|++.+++++|
T Consensus 152 ~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~-~lhi~~~~llv~~~~~g 204 (473)
T KOG1347|consen 152 MLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGLVAL-VLHILLTWLLVSKLGLG 204 (473)
T ss_pred hhcchhhhhHHHHHHHHHHHhccCchHHHHHHHHHH-HHHHHHHHHhhhcccCC
Confidence 999999999999999999999999999999999998 89999999999999987
No 21
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=98.87 E-value=2e-07 Score=89.44 Aligned_cols=157 Identities=10% Similarity=0.043 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhhhh-hheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHHHHHH
Q 037649 55 FNYMLTFVTLILEIWFNQGLAPISGL-LPNPTILL-DSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDI 132 (257)
Q Consensus 55 ~~~l~l~~~~~le~~~~~i~~~~~g~-lg~~~~al-aa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 132 (257)
|+..-+.+...++.....++..+.++ +|+++ . +++++ +.++..+..
T Consensus 4 k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~--~~~~~~~------------------------------~~~i~~~~~ 51 (502)
T TIGR01695 4 KSTLIVSLGTLFSRITGFVRDAIIASAFGAGL--TADAFNV------------------------------AFVIPNFFR 51 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--HhhHHHH------------------------------HHHHHHHHH
Confidence 44444456667777777788889898 78654 4 67777 444444444
Q ss_pred HHHH--HHHHHH-HHHhccCCh-HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhccccc--CCCHHHHHHHHHHHHHHH
Q 037649 133 NVML--GLSAAA-SNELGAAHP-KAAKFSVLVVNANSIFISV-VFSAVVLIFRADLSKPF--ASDSEVVQAVSNLIPSLA 205 (257)
Q Consensus 133 ~~~~--gls~a~-g~~lGa~~~-~~a~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~F--t~d~~v~~~~~~~l~i~~ 205 (257)
.... |++.+. .+..|+++. |++++....+.......+. ...++.+++.+++.+++ +.|+|+.+.+.+|+++.+
T Consensus 52 ~~~~~~g~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~ 131 (502)
T TIGR01695 52 RLFAEGAFNSAFVPVFTKAKKKEKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMF 131 (502)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 4333 566666 777777666 5888777776666554444 45677888899999988 457888899999999999
Q ss_pred HHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHH
Q 037649 206 ISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLP 244 (257)
Q Consensus 206 ~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lP 244 (257)
++.++..+..+.++++||.||.+.+++.+++.. ++.+.
T Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-i~~i~ 169 (502)
T TIGR01695 132 PYLLLISLAAVFGGILNARKRFFIPSFSPILFN-IGVIL 169 (502)
T ss_pred HHHHHHHHHHHHHHHHhccCeeHHHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999887 34444
No 22
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=98.85 E-value=2.2e-07 Score=88.79 Aligned_cols=148 Identities=13% Similarity=0.121 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHHHHHHHHH-HHHH
Q 037649 62 VTLILEIWFNQGLAPISGL-LPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDINVM-LGLS 139 (257)
Q Consensus 62 ~~~~le~~~~~i~~~~~g~-lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~gls 139 (257)
+....+.....+++++.++ +|+++ .++++. ..++..+...+. .|++
T Consensus 10 ~~~~~~~~~~~i~~~~l~r~Lg~~~--~G~~~~------------------------------~~~~~~~~~~~~~~Gl~ 57 (488)
T TIGR02900 10 IANLITRILGFIFRIVLSRILGAEG--VGLYGM------------------------------AMPIYFLFITLTTGGLP 57 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHH--hhHHHH------------------------------HHHHHHHHHHHHhCCcH
Confidence 5556666666778888888 57543 566666 444555544443 4677
Q ss_pred HHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649 140 AAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQP 215 (257)
Q Consensus 140 ~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~~~~~~~~~~~~ 215 (257)
.+. +++.|++|+|++++..+.+..+.+..+++..++.+++.+.+...+.+|++.. .++++.++..++..+..
T Consensus 58 ~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~----~~l~~~~~~~~~~~~~~ 133 (488)
T TIGR02900 58 VAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSL----YSLLVICPAMPFIALSS 133 (488)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHH----HHHHHHHHHHHHHHHHH
Confidence 666 8889999999999999999999999999999999999999887776776643 46777888888999999
Q ss_pred HHHHHhHhcCchhHHHHHHHHHHHHhHHHHH
Q 037649 216 ILSGVAIGSGWQAIVAYVNLACYYIMGLPMG 246 (257)
Q Consensus 216 ~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~ 246 (257)
+.++.+||.+|.+..+..+.+.. ++++++.
T Consensus 134 ~~~~~l~~~~~~~~~~~~~~i~~-i~~~~~~ 163 (488)
T TIGR02900 134 VLKGYFQGISNMKPPAYIQVIEQ-IVRISVV 163 (488)
T ss_pred HHHHHHhhhccchHhHHHHHHHH-HHHHHHH
Confidence 99999999999999999888776 4554443
No 23
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=98.79 E-value=9.4e-07 Score=85.54 Aligned_cols=170 Identities=9% Similarity=0.079 Sum_probs=134.2
Q ss_pred hhHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649 52 VSIFNYMLTFVTLILEI----WFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY 127 (257)
Q Consensus 52 ~~~~~~l~l~~~~~le~----~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 127 (257)
++.|++++...+..+.. ....++..++..++++. +++.+- +.++
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~--vs~l~Y------------------------------A~~l 242 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGS--VSALNY------------------------------AQRL 242 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH--HHHHHH------------------------------HHHH
Confidence 34677877774444433 33445667777788664 344333 5555
Q ss_pred HHHHHH-HHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC----CCHHHHHHHH
Q 037649 128 LNWDIN-VMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFA----SDSEVVQAVS 198 (257)
Q Consensus 128 ~~~~~~-~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft----~d~~v~~~~~ 198 (257)
.++... +..+++.+. ++..-++|.++.|+..+.++.....+.+..++.++.+++++.++.= -|+|-.+...
T Consensus 243 ~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta 322 (451)
T PF03023_consen 243 YQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTA 322 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHH
Confidence 555443 344666665 9999999999999999999999999999999999999999887652 3777789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcC
Q 037649 199 NLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTS 254 (257)
Q Consensus 199 ~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~ 254 (257)
+.+.+++++.++.+++..+..++.+.+|+|.++..+.++. ++++.+++++...+|
T Consensus 323 ~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~~~~g 377 (451)
T PF03023_consen 323 SALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLVPFFG 377 (451)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888 788988877776554
No 24
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=98.40 E-value=4e-05 Score=75.86 Aligned_cols=112 Identities=10% Similarity=0.024 Sum_probs=101.4
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc-C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649 143 SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPF-A---SDSEVVQAVSNLIPSLAISVFLNGIQPILS 218 (257)
Q Consensus 143 g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~F-t---~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~ 218 (257)
+++..++|.+++++..+.++.++..+++..++.+.++.+++.+.. . -+++-.+...+.+..++.+.++.....++.
T Consensus 297 Sr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~ 376 (518)
T COG0728 297 SRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLS 376 (518)
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998764 2 256777888899999999999999999999
Q ss_pred HHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCC
Q 037649 219 GVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSL 255 (257)
Q Consensus 219 gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~l 255 (257)
-++.+.+|+|.|+.+.+++. ++++-+++.+...++.
T Consensus 377 ~~FYAr~d~ktP~~i~ii~~-~~n~~l~~~l~~~~~~ 412 (518)
T COG0728 377 RVFYAREDTKTPMKIAIISL-VVNILLNLLLIPPLGH 412 (518)
T ss_pred HHHHHccCCCcChHHHHHHH-HHHHHHHHHHHhhccc
Confidence 99999999999999999998 7889888777666654
No 25
>PRK15099 O-antigen translocase; Provisional
Probab=98.39 E-value=1.4e-05 Score=75.55 Aligned_cols=109 Identities=15% Similarity=0.141 Sum_probs=85.8
Q ss_pred HHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Q 037649 135 MLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFL 210 (257)
Q Consensus 135 ~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~~~~~~~ 210 (257)
..|++.+. +++ ++|+|++++....+..+.+..+++.+++.+++.+++...+.+|+|. ..++.+..+..+.
T Consensus 55 ~~G~~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~ 128 (416)
T PRK15099 55 GAGIFNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMG 128 (416)
T ss_pred cCCccceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHH
Confidence 44554444 666 7899999999999999999999999999999999999888777752 2445555555556
Q ss_pred HHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHh
Q 037649 211 NGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGF 251 (257)
Q Consensus 211 ~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~ 251 (257)
..+....++++||.||++.++..++.+. ++++.+ +++.+
T Consensus 129 ~~~~~~~~~~lr~~~~~~~~~~~~~~~~-~~~i~l-~i~~~ 167 (416)
T PRK15099 129 IAWANLLLAILKGFRDAAGNALSLIVGS-LIGVAA-YYLCY 167 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHH
Confidence 6778889999999999999999998887 666665 44443
No 26
>PRK10459 colanic acid exporter; Provisional
Probab=98.29 E-value=8.4e-05 Score=71.66 Aligned_cols=163 Identities=9% Similarity=0.014 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHH
Q 037649 53 SIFNYMLTFVTLIL----EIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYL 128 (257)
Q Consensus 53 ~~~~~l~l~~~~~l----e~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 128 (257)
.+|++++.+.+... .....++|.++.|+.-.++ +++.++. +.++.
T Consensus 205 ~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~-~vG~Y~~------------------------------A~~l~ 253 (492)
T PRK10459 205 SVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAE-VLGGYNL------------------------------AYNVA 253 (492)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchH-hhhhHHH------------------------------HHHHH
Confidence 46788888854444 3455677888888754332 3555555 23333
Q ss_pred HHHHHHH-HHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649 129 NWDINVM-LGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS 203 (257)
Q Consensus 129 ~~~~~~~-~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i 203 (257)
+...... ..++... ++. ++|+++.|+..+........+++...+.+..+.+++..++-.|+ .+.+...+.+
T Consensus 254 ~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~i 329 (492)
T PRK10459 254 TVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQL 329 (492)
T ss_pred HHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHH
Confidence 2221111 1122222 443 67888999999999998888888888888888888876654332 3556788899
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHh
Q 037649 204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGF 251 (257)
Q Consensus 204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~ 251 (257)
.++..++..+......++.+.||+|..+..+++.. ++.+|..+.+..
T Consensus 330 l~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~~ 376 (492)
T PRK10459 330 LCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGGQ 376 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHHh
Confidence 99888888888888899999999999999998776 677787665554
No 27
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.26 E-value=0.00016 Score=69.24 Aligned_cols=168 Identities=15% Similarity=0.137 Sum_probs=129.0
Q ss_pred hhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649 52 VSIFNYMLTFVTL----ILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY 127 (257)
Q Consensus 52 ~~~~~~l~l~~~~----~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 127 (257)
+.++++++.+.+. .......++|.++.|+.-.++ .++-++. ..++
T Consensus 210 ~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~-~vG~Y~~------------------------------a~~i 258 (480)
T COG2244 210 ALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPA-QVGIYSA------------------------------AQRL 258 (480)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-Hheeccc------------------------------ccHH
Confidence 4467788888444 444556778999888753322 3555554 4556
Q ss_pred HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc-CCCHHHHHHHHHHHH
Q 037649 128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPF-ASDSEVVQAVSNLIP 202 (257)
Q Consensus 128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~F-t~d~~v~~~~~~~l~ 202 (257)
......+...++.+. ++...++|.++.++..+........+++...+....+.+++..++ +++.+. +...+.
T Consensus 259 ~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~---~~~~l~ 335 (480)
T COG2244 259 VSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYAS---AAPILQ 335 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccc---hhHHHH
Confidence 666666666777666 999999999999999999999999999999999999988777765 444432 677788
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcC
Q 037649 203 SLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTS 254 (257)
Q Consensus 203 i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~ 254 (257)
+.++...+..........+.+.|+++..++.+.++. ++++.+.+++....+
T Consensus 336 il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li~~~g 386 (480)
T COG2244 336 LLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLIPRFG 386 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHHHhhh
Confidence 888888899999999999999999999999999887 677777777765443
No 28
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=97.79 E-value=0.0012 Score=63.92 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHH--HHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC--CCHHHHH
Q 037649 124 IMNYLNWDINVML--GLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFA--SDSEVVQ 195 (257)
Q Consensus 124 ~~~~~~~~~~~~~--gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft--~d~~v~~ 195 (257)
+.++-.+...... +++.+. .+.. ++++|++++..+.........+..++++.+++.+++.+++. .|+|..+
T Consensus 17 A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~ 95 (451)
T PF03023_consen 17 AFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIE 95 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHH
Confidence 4555555554443 244444 6676 88999999999999999999999999999999999999985 5789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHH
Q 037649 196 AVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACY 238 (257)
Q Consensus 196 ~~~~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~ 238 (257)
.+.+++++..+..++.++..+..+++++.+|-..+....++-.
T Consensus 96 la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N 138 (451)
T PF03023_consen 96 LAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFN 138 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999998887776654
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=94.88 E-value=3.3 Score=41.46 Aligned_cols=151 Identities=14% Similarity=0.075 Sum_probs=105.5
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHHHHHHH
Q 037649 55 FNYMLTF-VTLILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYLNWDIN 133 (257)
Q Consensus 55 ~~~l~l~-~~~~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 133 (257)
|+...++ .+++.-...+.=+.+++..+|.+. ..+|..+ +.++=++.--
T Consensus 11 ks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~-~aDAF~v------------------------------Af~iPN~lRr 59 (518)
T COG0728 11 KSLIIVSSATLLSRILGFVRDVLIAAAFGAGA-AADAFFV------------------------------AFKLPNLLRR 59 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-HHHHHHH------------------------------HHHhHHHHHH
Confidence 4444444 344444455555778888888754 3577777 4444444443
Q ss_pred HHHH--HHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cccCC--CHHHHHHHHHHHHHH
Q 037649 134 VMLG--LSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLS-KPFAS--DSEVVQAVSNLIPSL 204 (257)
Q Consensus 134 ~~~g--ls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~-~~Ft~--d~~v~~~~~~~l~i~ 204 (257)
..-+ ++++- .++..+++.|++++...........+.+...++..++.+.+. .++.. |++....+....++.
T Consensus 60 lfaegafs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~ 139 (518)
T COG0728 60 LFAEGAFSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRIL 139 (518)
T ss_pred HHhchhHhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Confidence 3322 23333 778877878888888888886777777777888888888888 55554 344444788999999
Q ss_pred HHHHHHHHHHHHHHHHhHhcCchhHHHHHHHH
Q 037649 205 AISVFLNGIQPILSGVAIGSGWQAIVAYVNLA 236 (257)
Q Consensus 205 ~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~ 236 (257)
.++.++.++.....++++..++-..+...-..
T Consensus 140 ~Pyl~~isL~al~~aiLNs~~~F~~~a~aPvl 171 (518)
T COG0728 140 FPYLLFISLSALFGAILNSRNRFFIPAFAPVL 171 (518)
T ss_pred HHHHHHHHHHHHHHHHHhccCeechhhhhHHH
Confidence 99999999999999999999998876554433
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=94.03 E-value=2.9 Score=40.26 Aligned_cols=104 Identities=11% Similarity=0.195 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649 135 MLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQ 214 (257)
Q Consensus 135 ~~gls~a~g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~~~~~~~~~~~ 214 (257)
-.|++.+..|+ +| +.++............+.+..++.+.+.+.+...|.+ |+. ...+++.++..++..+.
T Consensus 59 ~~Gl~~aii~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~----~~~~~~~~~~~~~~~~~ 128 (492)
T PRK10459 59 DMGIGASIIQR---QD--ISHLQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHN-PEL----APLIKTLSLAFVIIPIG 128 (492)
T ss_pred HcCHHHHHHhc---cc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-hhh----HHHHHHHHHHHHHHHHh
Confidence 35666666442 11 1122334445566666766677777777777766654 443 34567777777777888
Q ss_pred HHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHH
Q 037649 215 PILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLL 249 (257)
Q Consensus 215 ~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll 249 (257)
....+.+++..+.+.....+.... +.+...+..+
T Consensus 129 ~~~~~~l~r~~~f~~~a~~~~~~~-i~~~~~~i~~ 162 (492)
T PRK10459 129 QQFRALLQKELEFNKLAKIEISAV-VAGFTFAVVS 162 (492)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHH
Confidence 888999999988887777776665 3444444433
No 31
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=93.58 E-value=0.25 Score=39.36 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhhcCC
Q 037649 201 IPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFKTSL 255 (257)
Q Consensus 201 l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~~~l 255 (257)
+.+.+++.++.+++...+.++++.||++..+..++++. ++++++.+.+...+|.
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li~~~G~ 55 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILIPRFGI 55 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999998 8999999999765543
No 32
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=93.54 E-value=4.3 Score=34.74 Aligned_cols=106 Identities=18% Similarity=0.174 Sum_probs=55.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhccCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHH
Q 037649 124 IMNYLNWDINV-MLGLSAAASNELGAAHP--KAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNL 200 (257)
Q Consensus 124 ~~~~~~~~~~~-~~gls~a~g~~lGa~~~--~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~ 200 (257)
..++.++...+ -.|++.+.-++..+.+. ++.+.............+++...+..+.. .+.++ +.... +
T Consensus 41 ~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~-~~~~~---~ 111 (273)
T PF01943_consen 41 ALSIVSLLSILADLGLSQAIVRFIAEYKDKKELRSAYFSSVLFLLLIFSLIFLLILLIAS-----FFGNP-SLSLI---L 111 (273)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCc-hHHHH---H
Confidence 34444444443 57788877655555544 33444444444333333333333333222 33333 22211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHH
Q 037649 201 IPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACY 238 (257)
Q Consensus 201 l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~ 238 (257)
........++........+.+++.++.+.....++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (273)
T PF01943_consen 112 IILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222567777888999999998888877777765
No 33
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=93.49 E-value=4.3 Score=34.58 Aligned_cols=104 Identities=15% Similarity=0.253 Sum_probs=64.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649 125 MNYLNWDINV-MLGLSAAASNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS 203 (257)
Q Consensus 125 ~~~~~~~~~~-~~gls~a~g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i 203 (257)
..+..+...+ -.|+....-++ .++++++.++..+.........+++...+...... .+ ++++.. .++..
T Consensus 27 ~s~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~----~~~~~ 96 (251)
T PF13440_consen 27 FSIVSILSIVASLGLRQSLVRS-AARDKQDIRSLLRFSLLVSLLLAVILAILAILIAY----FF-GDPELF----WLLLL 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh-CChhHH----HHHHH
Confidence 3444444443 45666555443 34667777777777766656555554444322222 33 344332 34455
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHH
Q 037649 204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACY 238 (257)
Q Consensus 204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~ 238 (257)
.++..+....+...++.+++.+|.+.....+....
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 131 (251)
T PF13440_consen 97 LALAIFFSALSQLFRSILRARGRFRAYALIDIVRS 131 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 66677788888999999999999999888877765
No 34
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=93.14 E-value=7.4 Score=36.89 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=38.2
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCchh
Q 037649 185 KPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQA 228 (257)
Q Consensus 185 ~~Ft~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~ 228 (257)
+.|.-||++.+.+...+.++.+..+++++....+|++.=.-++.
T Consensus 116 ~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 116 DLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 56788999999999999999999999999999999988444333
No 35
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=87.38 E-value=27 Score=33.26 Aligned_cols=101 Identities=17% Similarity=0.254 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhccCChHH----HHHH-HHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHH
Q 037649 124 IMNYLNWDINVM-LGLSAAASNELGAAHPKA----AKFS-VLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAV 197 (257)
Q Consensus 124 ~~~~~~~~~~~~-~gls~a~g~~lGa~~~~~----a~~~-~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~ 197 (257)
...+..+...+. .|+..+..++..+.+.++ .+.. ...........+.+........... | +..
T Consensus 48 ~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~----~~~ 116 (480)
T COG2244 48 ALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPI-------D----PVL 116 (480)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------C----hhh
Confidence 444555555544 778888755555444443 3333 3333333333333333333222221 2 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHH
Q 037649 198 SNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVAYVNL 235 (257)
Q Consensus 198 ~~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l 235 (257)
...+.................+.+|+.++.+.......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (480)
T COG2244 117 ALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIV 154 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Confidence 34455677777888888899999999999887776633
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=87.16 E-value=14 Score=37.23 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHH
Q 037649 152 KAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSGVAIGSGWQAIVA 231 (257)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~gvl~g~G~~~~~~ 231 (257)
+++.+.....+.....+++++.....-..+.+..+...+.=.-..+.+.++.++...++.+++.+..+.+.+..+++...
T Consensus 339 ~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~ 418 (549)
T PF04506_consen 339 KQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLD 418 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHH
Confidence 44555566666666777766666666666666666643222222236778889999999999999999999999888654
Q ss_pred HHHHH--HHHHhHHHHHHHHHhhcCCC
Q 037649 232 YVNLA--CYYIMGLPMGCLLGFKTSLD 256 (257)
Q Consensus 232 ~i~l~--~~~~i~lPl~~ll~~~~~lG 256 (257)
.-|-. ..-++-+-.+|++..+ ++|
T Consensus 419 ~~~~~m~~~S~~f~~~~~~l~~~-~~G 444 (549)
T PF04506_consen 419 RYNYWMVVFSAIFLAASYLLTRW-GLG 444 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cCC
Confidence 43322 2223444566766665 454
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.72 E-value=9.1 Score=38.02 Aligned_cols=113 Identities=15% Similarity=0.078 Sum_probs=71.5
Q ss_pred HHHhccCChHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649 143 SNELGAAHPKAAKFSVLV---VNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSLAISVFLNGIQPILSG 219 (257)
Q Consensus 143 g~~lGa~~~~~a~~~~~~---~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~g 219 (257)
+|-+-.+++|+.|+.... .......+|+++.+...-....+..+++.+.=.-..+...+++++...++.+++.+..+
T Consensus 307 A~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEa 386 (530)
T KOG2864|consen 307 ARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEA 386 (530)
T ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHH
Confidence 666666777777766644 44444555555555444445555666654332233345778899999999999999999
Q ss_pred HhHhcCchhHHHHHHH--HHHHHhHHHHHHHHHhhcCC
Q 037649 220 VAIGSGWQAIVAYVNL--ACYYIMGLPMGCLLGFKTSL 255 (257)
Q Consensus 220 vl~g~G~~~~~~~i~l--~~~~~i~lPl~~ll~~~~~l 255 (257)
.+.+.++.+..-.-|- ...=++-+.++|+|.-++|.
T Consensus 387 F~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~ 424 (530)
T KOG2864|consen 387 FAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGL 424 (530)
T ss_pred HHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHhch
Confidence 9999998876542221 11114455677777766653
No 38
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=61.08 E-value=46 Score=24.88 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=22.2
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHH
Q 037649 143 SNELGAAHPKAAKFSVLVVNANSIFISV 170 (257)
Q Consensus 143 g~~lGa~~~~~a~~~~~~~~~~~~~~~~ 170 (257)
-...-+||.++|++..+.+-.++..-.+
T Consensus 45 ~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~ 72 (82)
T PF04505_consen 45 RSRYAAGDYEGARRASRKAKKWSIIAII 72 (82)
T ss_pred HHHHHCCCHHHHHHHHHHhHHHHHHHHH
Confidence 6677889999999999988877754433
No 39
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=37.58 E-value=3.5e+02 Score=25.33 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=23.0
Q ss_pred cchHhHHhcC--CChHHHHHHHHHHhhHHhhccccccchhhhh
Q 037649 2 PATANRILSG--LPSDVIEEYLGRQRMAFRWWPRLFGWEWRLL 42 (257)
Q Consensus 2 ~~~~at~~s~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (257)
|..|||..|+ ++...+---+-.+...+..+.|....+||+.
T Consensus 71 P~~ya~l~s~lylpl~liL~~li~RgvafefR~~~~~~~~r~~ 113 (328)
T PF02322_consen 71 PLAYATLFSGLYLPLFLILLGLILRGVAFEFRHKADSPRWRRF 113 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHH
Confidence 8889999999 4444333333333445555444434455554
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=35.78 E-value=2.7e+02 Score=23.44 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=27.0
Q ss_pred hhHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCchhhhhhheee
Q 037649 52 VSIFNYMLTF----VTLILEIWFNQGLAPISGLLPNPTILLDSVSV 93 (257)
Q Consensus 52 ~~~~~~l~l~----~~~~le~~~~~i~~~~~g~lg~~~~alaa~si 93 (257)
+..|++++.+ +...........|..+.+.+.+++ +++-+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~-~vg~Y~~ 246 (273)
T PF01943_consen 202 KFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPE-AVGIYSV 246 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHH-HHHHHHH
Confidence 3467777777 344455667788999999865443 3566666
No 41
>PRK10484 putative transporter; Provisional
Probab=32.35 E-value=4.1e+02 Score=26.21 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=21.0
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHH
Q 037649 143 SNELGAAHPKAAKFSVLVVNANSIFISV 170 (257)
Q Consensus 143 g~~lGa~~~~~a~~~~~~~~~~~~~~~~ 170 (257)
-+.+.+||.|++|+....+....+....
T Consensus 265 qR~~aak~~k~a~~~~~~~~~~~~~~~~ 292 (523)
T PRK10484 265 QRALGAKNLAEGQKGALLAAFFKLLGPL 292 (523)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999988776554444433
No 42
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=27.43 E-value=5.8e+02 Score=24.77 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=33.8
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHH
Q 037649 143 SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIP 202 (257)
Q Consensus 143 g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~ 202 (257)
-+.+.+|+++++|+....+......+......+.+..+...++.-..|...-....++++
T Consensus 258 qR~~aaks~~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~~~~~~~~p~l~~~~lp 317 (483)
T PRK09442 258 VRCMSYKDSKALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDLTVPDKVIPTLMLKVLP 317 (483)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccchHHHHHHHHcC
Confidence 778889999999998877765555554444444433333222221234444444445444
No 43
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=23.29 E-value=6.8e+02 Score=24.13 Aligned_cols=34 Identities=9% Similarity=-0.033 Sum_probs=23.3
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649 143 SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVV 176 (257)
Q Consensus 143 g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~ 176 (257)
-+.+.++|++++|+....+......+......+.
T Consensus 257 ~R~~aak~~~~a~~~~~~~~~~~~~~~~~~~~~G 290 (471)
T TIGR02119 257 VRCMSYKDSKAMHRAMIIGTIVVGIIMLGMHLAG 290 (471)
T ss_pred HHHHhcCCHHHHhhhHhHHHHHHHHHHHHHHHHH
Confidence 5788999999999998877655444444333333
No 44
>COG1738 yhhQ Uncharacterized member of the PurR regulon [General function prediction only]
Probab=23.01 E-value=3.9e+02 Score=24.03 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=24.7
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649 143 SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLI 178 (257)
Q Consensus 143 g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~ 178 (257)
.+.+| +++||+.+..++...++.++...+.+..
T Consensus 73 ~e~yG---~~~Ark~V~~gf~~~lv~~~l~~~~~~~ 105 (233)
T COG1738 73 VEIYG---KKEARKAVFLGFFSALVFSILTQIALHF 105 (233)
T ss_pred HHHhC---HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77777 4678888888888888887776665443
No 45
>COG3462 Predicted membrane protein [Function unknown]
Probab=20.55 E-value=2.7e+02 Score=22.42 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=27.6
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHH
Q 037649 116 TWWWFINFIMNYLNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLV 160 (257)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~ 160 (257)
-||-+|++..-+..+...+++...... ++.-++.+-++|..+.+-
T Consensus 48 Gm~lImpI~~~vvli~lvvfm~~~~g~~r~~~~~d~~e~~sRA~eIlkE 96 (117)
T COG3462 48 GMWLIMPIFWAVVLIFLVVFMFYILGAVRRGSDDDDAERGSRAEEILKE 96 (117)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcccccccHHHHHHHH
Confidence 356666666555555555555555554 677777777777776653
Done!