Query 037649
Match_columns 257
No_of_seqs 199 out of 2360
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:25:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.8 8.5E-20 2.9E-24 169.6 15.2 168 53-252 236-411 (460)
2 3mkt_A Multi antimicrobial ext 99.5 1.5E-13 5E-18 127.4 13.9 167 52-252 9-183 (460)
3 2xq2_A Sodium/glucose cotransp 11.1 5.9E+02 0.02 24.1 7.5 26 143-168 272-297 (593)
4 3dh4_A Sodium/glucose cotransp 7.2 5.9E+02 0.02 23.7 5.7 23 143-165 243-265 (530)
5 2wdq_C Succinate dehydrogenase 6.1 6.2E+02 0.021 18.9 4.3 32 143-174 93-126 (129)
6 4b19_A PEPA1; toxin, toxin apo 5.1 1.3E+02 0.0046 17.6 -0.2 18 5-22 8-25 (30)
7 2kdc_A Diacylglycerol kinase; 4.2 1.1E+03 0.039 17.6 4.6 42 136-177 69-116 (121)
8 4fhr_B Flagellar motor switch 4.0 3.6E+02 0.012 22.5 1.7 21 2-22 17-37 (216)
9 3tui_A D-methionine transport 4.0 1.3E+03 0.044 17.4 5.3 47 143-189 123-169 (217)
10 2h88_C Succinate dehydrogenase 2.8 1.4E+03 0.047 17.3 3.9 24 150-173 115-138 (140)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.82 E-value=8.5e-20 Score=169.55 Aligned_cols=168 Identities=17% Similarity=0.285 Sum_probs=154.5
Q ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHHH
Q 037649 53 SIFNYMLTFVTL----ILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNYL 128 (257)
Q Consensus 53 ~~~~~l~l~~~~----~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 128 (257)
.+|++++.+.+. ..+...+.+++.+.+++|+. +++++++ ..++.
T Consensus 236 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i------------------------------~~~i~ 283 (460)
T 3mkt_A 236 ELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQV------------------------------ALNFS 283 (460)
T ss_dssp STTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHH------------------------------HHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHH------------------------------HHHHH
Confidence 457788888444 45677788889999999754 5788888 78899
Q ss_pred HHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHH
Q 037649 129 NWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPSL 204 (257)
Q Consensus 129 ~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i~ 204 (257)
++...+..+++.+. |+++|++|+|++|+..+.+...+..+++..++++.++++++..+|++|+|+.+.+.+++++.
T Consensus 284 ~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~ 363 (460)
T 3mkt_A 284 SLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFA 363 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999888 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhh
Q 037649 205 AISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFK 252 (257)
Q Consensus 205 ~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~ 252 (257)
+++.++++++.+..++++|.||++.+++.++++.|++++|+++++...
T Consensus 364 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 411 (460)
T 3mkt_A 364 AIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMT 411 (460)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999987
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.51 E-value=1.5e-13 Score=127.45 Aligned_cols=167 Identities=13% Similarity=0.092 Sum_probs=144.4
Q ss_pred hhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCchhhhhhheeecccccchhhhhhccchhhHHHHHHHHhHhhHHHH
Q 037649 52 VSIFNYMLTFVTL----ILEIWFNQGLAPISGLLPNPTILLDSVSVRYFHPSLILQHLHFTDSKLLILTWWWFINFIMNY 127 (257)
Q Consensus 52 ~~~~~~l~l~~~~----~le~~~~~i~~~~~g~lg~~~~alaa~si~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 127 (257)
+..|++++.+++. ..+.....+++.+++++|+. +++++++ ..++
T Consensus 9 ~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~--~~~~~~~------------------------------~~~i 56 (460)
T 3mkt_A 9 KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAI--DMAAVSI------------------------------AASI 56 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTT--TSSHHHH------------------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHHHH------------------------------HHHH
Confidence 4568888888544 45555667788999999854 4677777 5666
Q ss_pred HHHHHHHHHHHHHHH----HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 037649 128 LNWDINVMLGLSAAA----SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASDSEVVQAVSNLIPS 203 (257)
Q Consensus 128 ~~~~~~~~~gls~a~----g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d~~v~~~~~~~l~i 203 (257)
..+...+..|++.+. ++++|++|+|++++..+.+......++++..++ +++.+++..+++.|+|+.+.+.+|+++
T Consensus 57 ~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i 135 (460)
T 3mkt_A 57 WLPSILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHA 135 (460)
T ss_dssp HHHHHHHHHHHHHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 667677778888777 999999999999999999999999999987765 788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHHhh
Q 037649 204 LAISVFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIMGLPMGCLLGFK 252 (257)
Q Consensus 204 ~~~~~~~~~~~~~~~gvl~g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~ 252 (257)
.+++.++..+....++++||.||++.+++.++++. ++++++++++.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l~~~li~~ 183 (460)
T 3mkt_A 136 VIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGL-LLNIPLNWIFVYG 183 (460)
T ss_dssp GGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHH-HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 99999999999999999999999999999999988 7899999998875
No 3
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=11.09 E-value=5.9e+02 Score=24.07 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=20.1
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHH
Q 037649 143 SNELGAAHPKAAKFSVLVVNANSIFI 168 (257)
Q Consensus 143 g~~lGa~~~~~a~~~~~~~~~~~~~~ 168 (257)
-+.+.++|++++|+....+.......
T Consensus 272 qR~laaks~k~ar~~~~~~~~~~~~~ 297 (593)
T 2xq2_A 272 QRTLAAKSVSEAQKGIVFAAFLALIV 297 (593)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHTTTH
T ss_pred HHhheeCCHHHHHHHHHHHHHHHHHH
Confidence 67889999999999988766554333
No 4
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=7.24 E-value=5.9e+02 Score=23.71 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=18.4
Q ss_pred HHHhccCChHHHHHHHHHHHHHH
Q 037649 143 SNELGAAHPKAAKFSVLVVNANS 165 (257)
Q Consensus 143 g~~lGa~~~~~a~~~~~~~~~~~ 165 (257)
-+.+.+||++++|+....+....
T Consensus 243 qR~laaks~k~ar~~~~~~~~~~ 265 (530)
T 3dh4_A 243 QRTLAAKSVSEAQKGIVFAAFLK 265 (530)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Confidence 67799999999999887665543
No 5
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=6.08 E-value=6.2e+02 Score=18.88 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=23.7
Q ss_pred HHHhccC-C-hHHHHHHHHHHHHHHHHHHHHHHH
Q 037649 143 SNELGAA-H-PKAAKFSVLVVNANSIFISVVFSA 174 (257)
Q Consensus 143 g~~lGa~-~-~~~a~~~~~~~~~~~~~~~~~~~~ 174 (257)
-..+|.+ + +|.+++..+..+..++++++..++
T Consensus 93 ~~D~G~g~~~~~~~~~~~~~vl~~s~vlt~~~~~ 126 (129)
T 2wdq_C 93 MMDFGYLEETFEAGKRSAKISFVITVVLSLLAGV 126 (129)
T ss_dssp HHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566654 3 789999999988888887776543
No 6
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=5.11 E-value=1.3e+02 Score=17.64 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=11.0
Q ss_pred HhHHhcCCChHHHHHHHH
Q 037649 5 ANRILSGLPSDVIEEYLG 22 (257)
Q Consensus 5 ~at~~s~~~~~~i~~~~~ 22 (257)
+||++|++.-.....++.
T Consensus 8 ia~visGcivalF~hWL~ 25 (30)
T 4b19_A 8 IAPVISGCAIAFFSYWLS 25 (30)
T ss_dssp TTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567777765555555554
No 7
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=4.18 E-value=1.1e+03 Score=17.61 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=25.5
Q ss_pred HHHHHHH---HHHhccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649 136 LGLSAAA---SNELGAAHP---KAAKFSVLVVNANSIFISVVFSAVVL 177 (257)
Q Consensus 136 ~gls~a~---g~~lGa~~~---~~a~~~~~~~~~~~~~~~~~~~~v~~ 177 (257)
--++.|. -...+.+.+ ++||+.+.-+..++...+++.+.+++
T Consensus 69 EllNTAIE~vvD~v~~e~h~lak~AKD~aaaAVlv~~~~a~~v~~~i~ 116 (121)
T 2kdc_A 69 EILNSAIEAVVDRIGSEYHELSGRAKDMGSAAVLIAIIVAVITWCILL 116 (121)
T ss_dssp HTHHHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554 344554433 57777777777777777777666554
No 8
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=3.99 E-value=3.6e+02 Score=22.47 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=17.3
Q ss_pred cchHhHHhcCCChHHHHHHHH
Q 037649 2 PATANRILSGLPSDVIEEYLG 22 (257)
Q Consensus 2 ~~~~at~~s~~~~~~i~~~~~ 22 (257)
|-++|.|+|++....-++.+.
T Consensus 17 PQ~iA~iLs~L~~~~AA~VL~ 37 (216)
T 4fhr_B 17 PQTIAVVLSYLDPPVAAQILG 37 (216)
T ss_dssp HHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 789999999998887666664
No 9
>3tui_A D-methionine transport system permease protein ME; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} SCOP: f.58.1.1 PDB: 3dhw_A* 3tuj_A 3tuz_A*
Probab=3.99 E-value=1.3e+03 Score=17.41 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=31.9
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC
Q 037649 143 SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFAS 189 (257)
Q Consensus 143 g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~ 189 (257)
++..|+++.+..++...-...-.+..+........+-.......++.
T Consensus 123 A~~~Gas~~~~~~~i~lP~~~p~i~~~~~~~~~~~~~~~~~~~~l~~ 169 (217)
T 3tui_A 123 SRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGA 169 (217)
T ss_dssp HHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHcCCCHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999998887766666666665555544444444454444
No 10
>2h88_C Succinate dehydrogenase cytochrome B, large subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 2h89_C* 1yq3_C* 1yq4_C* 2fbw_C* 2wqy_C*
Probab=2.82 E-value=1.4e+03 Score=17.32 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Q 037649 150 HPKAAKFSVLVVNANSIFISVVFS 173 (257)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~ 173 (257)
+.+++++..+..+..++++++..+
T Consensus 115 ~~~~~~~s~~~v~~~s~vlt~~~~ 138 (140)
T 2h88_C 115 KLSQVEQSGVVVLILTLLSSAAIA 138 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh
Done!