Query 037649
Match_columns 257
No_of_seqs 199 out of 2360
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 04:25:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037649.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037649hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54m_ f.23.7.1 (M:) Mitochon 10.3 91 0.0066 18.4 2.5 27 223-252 11-37 (43)
2 d1v54l_ f.23.6.1 (L:) Mitochon 7.1 1.2E+02 0.0087 18.0 2.0 28 158-185 18-45 (46)
3 d1nekc_ f.21.2.2 (C:) Succinat 5.5 4.1E+02 0.03 18.0 4.8 33 143-175 93-127 (129)
4 d2onkc1 f.58.1.1 (C:1-252) Mol 4.6 6E+02 0.044 18.4 8.1 35 143-177 162-196 (252)
5 d1lkvx_ a.118.14.1 (X:) FliG { 4.3 1.8E+02 0.013 21.1 2.0 22 2-23 14-35 (213)
6 d3d31c1 f.58.1.1 (C:13-260) Su 3.1 8.2E+02 0.06 17.4 6.6 33 143-175 162-194 (248)
7 d3dhwa1 f.58.1.1 (A:6-208) D-m 2.6 8.8E+02 0.064 16.7 5.6 48 143-190 118-165 (203)
8 d2r6gg1 f.58.1.1 (G:7-296) Mal 2.4 5.7E+02 0.042 19.1 3.5 34 143-176 186-219 (290)
9 d2glia5 g.37.1.1 (A:229-257) F 2.3 1.8E+02 0.013 15.5 0.0 11 94-104 13-23 (29)
10 d1t1ra3 c.2.1.3 (A:275-300) 1- 2.3 4E+02 0.029 13.6 1.5 13 241-253 1-13 (26)
No 1
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.30 E-value=91 Score=18.36 Aligned_cols=27 Identities=30% Similarity=0.202 Sum_probs=17.4
Q ss_pred hcCchhHHHHHHHHHHHHhHHHHHHHHHhh
Q 037649 223 GSGWQAIVAYVNLACYYIMGLPMGCLLGFK 252 (257)
Q Consensus 223 g~G~~~~~~~i~l~~~~~i~lPl~~ll~~~ 252 (257)
|.+++.+++-+.+++ +-+|.+|+|...
T Consensus 11 s~~E~aigLt~~f~~---~L~PaGwVLshL 37 (43)
T d1v54m_ 11 SPKEQAIGLSVTFLS---FLLPAGWVLYHL 37 (43)
T ss_dssp CHHHHHHHHHHHHHH---HHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHH---HHccHHHHHHHH
Confidence 345566666655555 447999999864
No 2
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.12 E-value=1.2e+02 Score=17.99 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 037649 158 VLVVNANSIFISVVFSAVVLIFRADLSK 185 (257)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~~~~~~l~~ 185 (257)
.+....+++.++..+++-+++.+.++.+
T Consensus 18 ~rLla~m~~~fGsgfa~PF~ivRhqLlK 45 (46)
T d1v54l_ 18 WRLLAMMTLFFGSGFAAPFFIVRHQLLK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHhc
Confidence 3444555666667777777777877653
No 3
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=5.51 E-value=4.1e+02 Score=18.04 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=24.5
Q ss_pred HHHhccC--ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649 143 SNELGAA--HPKAAKFSVLVVNANSIFISVVFSAV 175 (257)
Q Consensus 143 g~~lGa~--~~~~a~~~~~~~~~~~~~~~~~~~~v 175 (257)
-...|.+ ..+.+|+........+++.++.....
T Consensus 93 ~wD~G~g~~~~~~~~~s~~~~~~~si~~s~~~~~~ 127 (129)
T d1nekc_ 93 MMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVL 127 (129)
T ss_dssp HHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666754 47888999988888888887776654
No 4
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.64 E-value=6e+02 Score=18.38 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=26.3
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649 143 SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVL 177 (257)
Q Consensus 143 g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~ 177 (257)
++.+|+++.++-++...-...-++..+.....+.-
T Consensus 162 A~~lGas~~~~~~~i~lP~~~p~i~~~~~l~~~~~ 196 (252)
T d2onkc1 162 ARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARG 196 (252)
T ss_dssp HHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCccccceEEEhHHhHHHHHHHHHHHHHHH
Confidence 99999999999999887766666666655554443
No 5
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=4.29 E-value=1.8e+02 Score=21.15 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=17.5
Q ss_pred cchHhHHhcCCChHHHHHHHHH
Q 037649 2 PATANRILSGLPSDVIEEYLGR 23 (257)
Q Consensus 2 ~~~~at~~s~~~~~~i~~~~~~ 23 (257)
|.++|.|++++.++-.++.+..
T Consensus 14 p~~~A~iL~~L~~d~aa~vL~~ 35 (213)
T d1lkvx_ 14 PQTIAVVLSYLDPPVAAQILGA 35 (213)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHh
Confidence 7889999999999866666643
No 6
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=3.07 E-value=8.2e+02 Score=17.40 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=25.5
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649 143 SNELGAAHPKAAKFSVLVVNANSIFISVVFSAV 175 (257)
Q Consensus 143 g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v 175 (257)
++.+|+++.++-++...=...-++..+......
T Consensus 162 A~~lGas~~~~~~~I~lP~~~p~i~~~~~l~f~ 194 (248)
T d3d31c1 162 ARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWA 194 (248)
T ss_dssp HHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877776666655554443
No 7
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=2.56 E-value=8.8e+02 Score=16.65 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=34.2
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCC
Q 037649 143 SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVVLIFRADLSKPFASD 190 (257)
Q Consensus 143 g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~Ft~d 190 (257)
++.+|+++.+.-++...-...-.+..+........+-...+....+.+
T Consensus 118 a~~lGas~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ig~~ 165 (203)
T d3dhwa1 118 SRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG 165 (203)
T ss_dssp HHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCC
T ss_pred HHHcCCchhhhhHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998877777777666666666555444445554443
No 8
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=2.42 E-value=5.7e+02 Score=19.08 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=27.8
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037649 143 SNELGAAHPKAAKFSVLVVNANSIFISVVFSAVV 176 (257)
Q Consensus 143 g~~lGa~~~~~a~~~~~~~~~~~~~~~~~~~~v~ 176 (257)
++..||++.+.-+++..=...=++..+.++..+.
T Consensus 186 A~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~ 219 (290)
T d2r6gg1 186 AALDGATPWQAFRLVLLPLSVPILAVVFILSFIA 219 (290)
T ss_dssp HHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhhh
Confidence 8999999999999998887777777776665554
No 9
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.32 E-value=1.8e+02 Score=15.47 Aligned_cols=11 Identities=45% Similarity=0.803 Sum_probs=6.6
Q ss_pred cccccchhhhh
Q 037649 94 RYFHPSLILQH 104 (257)
Q Consensus 94 ~~~~~~~~~~~ 104 (257)
+|-|||++=-|
T Consensus 13 ~YtdPSSLRKH 23 (29)
T d2glia5 13 RYTDPSSLRKH 23 (29)
T ss_dssp EESSHHHHHHH
T ss_pred ccCCHHHHHHH
Confidence 35677776444
No 10
>d1t1ra3 c.2.1.3 (A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}
Probab=2.27 E-value=4e+02 Score=13.65 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=9.5
Q ss_pred hHHHHHHHHHhhc
Q 037649 241 MGLPMGCLLGFKT 253 (257)
Q Consensus 241 i~lPl~~ll~~~~ 253 (257)
++.|.+|-|++--
T Consensus 1 MRtPIA~aLa~Pe 13 (26)
T d1t1ra3 1 MRTPIAHTMAWPN 13 (26)
T ss_dssp THHHHHHHHHTTS
T ss_pred CCchhhhhccCcc
Confidence 4678888888653
Done!