BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037651
(750 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 165 bits (418), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 187/645 (28%), Positives = 291/645 (45%), Gaps = 76/645 (11%)
Query: 75 FASLNSLQLLDLSGNSF-LEGQLSRNLGTLCNLQTLKLSLNQFRGE-VSDFI--DGLSEC 130
S + L+ L++S N+ G++S L L +L+ L LS N G V ++ DG E
Sbjct: 119 LGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGE- 176
Query: 131 INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLT 190
L L + N+++G++ +S NL +L++ N+F IP +G+ + L+ L ++
Sbjct: 177 -----LKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDIS 228
Query: 191 SNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNI 250
N+++G F + + +++L +S NQ+ G I L++L L SL+ N
Sbjct: 229 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL-----------SLAENK 277
Query: 251 SFDWIPPF------KLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQ 304
IP F L L + P + + + L +L L+ + S LP
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 305 LNLTLDELDVGGNHLSGRIPNTLVFRFPG--SVDLSSNRFEGP-LPLWSSN----LTKLY 357
L LD+ N SG +P +L ++DLSSN F GP LP N L +LY
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 358 LRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIP 417
L++N F+G IP L + L L +SFN L+G+IP S+G+L +L L + N L G IP
Sbjct: 398 LQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 418 QFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSL 477
Q L + +L L + N+ +GEIP + + + ++ LSNN L+GEIP + + L
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Query: 478 DLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGP- 536
L N SGNIPA +G+ SL L L +N FNGTIP+ + K S ++ N ++G
Sbjct: 517 KLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKR 571
Query: 537 ---------IPHCVG-----DFSAMK--------VKPP---DTEIYQGSLQVAIKGTQYV 571
C G +F ++ + P + +Y G +
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 631
Query: 572 ------YQQTLYLMPVEXXXXXXXXXXXXXXXQLVGKIPTQIGKLEWLESLDLSRNKLSG 625
Y +P E + G IP ++G L L LDLS NKL G
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 626 SIPPSMVSIRXXXXXXXXXXXXXGEIPTANQFQTSLIRQFMRIPG 670
IP +M ++ G IP QF+T +F+ PG
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPG 736
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 173/571 (30%), Positives = 268/571 (46%), Gaps = 101/571 (17%)
Query: 31 TSLQVLDLSNNGFNSTIPHWLFNITXXXXXXXXXXXXQGDIPDGFASLNSLQLLDLSGNS 90
+L+ LD+S+N F++ IP ++LQ LD+SGN
Sbjct: 197 VNLEFLDVSSNNFSTGIPF-------------------------LGDCSALQHLDISGNK 231
Query: 91 FLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNL 150
L G SR + T L+ L +S NQF G + + SL L L N+ TG +
Sbjct: 232 -LSGDFSRAISTCTELKLLNISSNQFVGPIPP--------LPLKSLQYLSLAENKFTGEI 282
Query: 151 PISL-GYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFP-ESFGQLSAI 208
P L G L L+L N F G++PP G+ + LE L L+SN +G+ P ++ ++ +
Sbjct: 283 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 342
Query: 209 RVLELSDNQWEGFITEAHLRNLT-SLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRY 267
+VL+LS N++ G + E+ L NL+ SL L L ++N S + P L+ L ++
Sbjct: 343 KVLDLSFNEFSGELPES-LTNLSASLLTLDL-SSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 268 YQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTL 327
K P L N +EL +L L+ +S T+PS L+ L +L + N L G IP L
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQEL 459
Query: 328 VF----------------RFPGS---------VDLSSNRFEGPLPLWSS---NLTKLYLR 359
++ P + LS+NR G +P W NL L L
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 360 DNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQF 419
+N FSG IP +LG + LD++ N NG+IP ++ KQ + I+ N ++G +
Sbjct: 520 NNSFSGNIPAELGDCRSLIW-LDLNTNLFNGTIPAAM--FKQ--SGKIAANFIAGKRYVY 574
Query: 420 LKN--------------------------ISSLYILDMTKNNFSGEIPESIGSLLTIRFL 453
+KN +S+ ++T + G + + ++ FL
Sbjct: 575 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 634
Query: 454 VLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTI 513
+S N LSG IP + + + L+LG N +SG+IP +G+ + L+IL L SN +G I
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRI 693
Query: 514 PSELCKLSALHILDLSHNNLSGPIPHCVGDF 544
P + L+ L +DLS+NNLSGPIP +G F
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPE-MGQF 723
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 155/522 (29%), Positives = 240/522 (45%), Gaps = 73/522 (13%)
Query: 2 FSK-LPSIVELHLPN--SNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITXXX 58
FS+ + + EL L N SN + PI P L SLQ L L+ N F IP +L
Sbjct: 236 FSRAISTCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 59 XXXXXXXXX-QGDIPDGFASLNSLQLLDLSGNSFLEGQLSRN-LGTLCNLQTLKLSLNQF 116
G +P F S + L+ L LS N+F G+L + L + L+ L LS N+F
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF-SGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 117 RGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN----LRYLELWYNSFLG 172
GE+ + + LS +SL L+L N +G PI +N L+ L L N F G
Sbjct: 353 SGELPESLTNLS-----ASLLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTG 405
Query: 173 SIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTS 232
IPP++ N + L L+L+ N ++G P S G LS +R L+L N EG I +
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-------- 457
Query: 233 LEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGA 292
EL +KT L L++ + L + P+ L N T L + L+
Sbjct: 458 --ELMYVKT------------------LETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 293 SISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLV-FRFPGSVDLSSNRFEGPLPLW-- 349
++ +P W +L L L + N SG IP L R +DL++N F G +P
Sbjct: 498 RLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 556
Query: 350 ------SSNLTK----LYLRDNLF------SGPIPNDLGQKTPFLTDL------DISFNS 387
++N +Y++++ +G + G ++ L L +I+
Sbjct: 557 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 616
Query: 388 LNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSL 447
G + N ++ L +S N LSG IP+ + ++ L+IL++ N+ SG IP+ +G L
Sbjct: 617 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 676
Query: 448 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIP 489
+ L LS+N L G IP ++ +++ +DL N LSG IP
Sbjct: 677 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 149/506 (29%), Positives = 217/506 (42%), Gaps = 85/506 (16%)
Query: 184 LEELYLTSNQMNGKFPE--SFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKT 241
L L L+ N ++G S G S ++ L +S N + + L SLE L L +
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL--S 156
Query: 242 SNSSLSFNISFDWI---PPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTL 298
+NS N+ W+ +L++L I ++ + L L ++ + S +
Sbjct: 157 ANSISGANV-VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI 213
Query: 299 PSWFWQLNLTLDELDVGGNHLSGRIPNTL-VFRFPGSVDLSSNRFEGPLP-LWSSNLTKL 356
P F L LD+ GN LSG + +++SSN+F GP+P L +L L
Sbjct: 214 P--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 271
Query: 357 YLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGI 416
L +N F+G IP+ L LT LD+S N G++P G+ L +L +S+NN SG +
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 417 P-QFLKNISSLYILDMTKNNFSGEIPESI----GSLLTIRF------------------- 452
P L + L +LD++ N FSGE+PES+ SLLT+
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 453 ----LVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNH 508
L L NN +G+IPP+L NCS + SL L N LSG IP+ +G S+ L L+L N
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNM 450
Query: 509 FNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGT 568
G IP EL + L L L N+L+G IP + + + +
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN-------------------- 490
Query: 569 QYVYQQTLYLMPVEXXXXXXXXXXXXXXXQLVGKIPTQIGKLEWLESLDLSRNKLSGSIP 628
+L G+IP IG+LE L L LS N SG+IP
Sbjct: 491 ----------------------WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Query: 629 PSMVSIRXXXXXXXXXXXXXGEIPTA 654
+ R G IP A
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAA 554
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 165 bits (418), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 187/645 (28%), Positives = 291/645 (45%), Gaps = 76/645 (11%)
Query: 75 FASLNSLQLLDLSGNSF-LEGQLSRNLGTLCNLQTLKLSLNQFRGE-VSDFI--DGLSEC 130
S + L+ L++S N+ G++S L L +L+ L LS N G V ++ DG E
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGE- 179
Query: 131 INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLT 190
L L + N+++G++ +S NL +L++ N+F IP +G+ + L+ L ++
Sbjct: 180 -----LKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDIS 231
Query: 191 SNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNI 250
N+++G F + + +++L +S NQ+ G I L++L L SL+ N
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL-----------SLAENK 280
Query: 251 SFDWIPPF------KLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQ 304
IP F L L + P + + + L +L L+ + S LP
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 305 LNLTLDELDVGGNHLSGRIPNTLVFRFPG--SVDLSSNRFEGP-LPLWSSN----LTKLY 357
L LD+ N SG +P +L ++DLSSN F GP LP N L +LY
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 358 LRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIP 417
L++N F+G IP L + L L +SFN L+G+IP S+G+L +L L + N L G IP
Sbjct: 401 LQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 418 QFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSL 477
Q L + +L L + N+ +GEIP + + + ++ LSNN L+GEIP + + L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 478 DLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGP- 536
L N SGNIPA +G+ SL L L +N FNGTIP+ + K S ++ N ++G
Sbjct: 520 KLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKR 574
Query: 537 ---------IPHCVG-----DFSAMK--------VKPP---DTEIYQGSLQVAIKGTQYV 571
C G +F ++ + P + +Y G +
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 572 ------YQQTLYLMPVEXXXXXXXXXXXXXXXQLVGKIPTQIGKLEWLESLDLSRNKLSG 625
Y +P E + G IP ++G L L LDLS NKL G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 626 SIPPSMVSIRXXXXXXXXXXXXXGEIPTANQFQTSLIRQFMRIPG 670
IP +M ++ G IP QF+T +F+ PG
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPG 739
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 170/568 (29%), Positives = 263/568 (46%), Gaps = 99/568 (17%)
Query: 33 LQVLDLSNNGFNSTIPHWLFNITXXXXXXXXXXXXQGDIPDGFASLNSLQLLDLSGNSFL 92
L+ LD+S+N F++ IP ++LQ LD+SGN L
Sbjct: 202 LEFLDVSSNNFSTGIPF-------------------------LGDCSALQHLDISGNK-L 235
Query: 93 EGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPI 152
G SR + T L+ L +S NQF G + + SL L L N+ TG +P
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPP--------LPLKSLQYLSLAENKFTGEIPD 287
Query: 153 SL-GYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFP-ESFGQLSAIRV 210
L G L L+L N F G++PP G+ + LE L L+SN +G+ P ++ ++ ++V
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 211 LELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQL 270
L+LS N++ G + E+ SL L L ++N S + P L+ L ++
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDL-SSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 271 GPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVF- 329
K P L N +EL +L L+ +S T+PS L+ L +L + N L G IP L++
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYV 465
Query: 330 ---------------RFPGS---------VDLSSNRFEGPLPLWSS---NLTKLYLRDNL 362
P + LS+NR G +P W NL L L +N
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 363 FSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKN 422
FSG IP +LG + LD++ N NG+IP ++ KQ + I+ N ++G ++KN
Sbjct: 526 FSGNIPAELGDCRSLIW-LDLNTNLFNGTIPAAM--FKQ--SGKIAANFIAGKRYVYIKN 580
Query: 423 --------------------------ISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLS 456
+S+ ++T + G + + ++ FL +S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 457 NNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSE 516
N LSG IP + + + L+LG N +SG+IP +G+ + L+IL L SN +G IP
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQA 699
Query: 517 LCKLSALHILDLSHNNLSGPIPHCVGDF 544
+ L+ L +DLS+NNLSGPIP +G F
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPE-MGQF 726
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 155/522 (29%), Positives = 240/522 (45%), Gaps = 73/522 (13%)
Query: 2 FSK-LPSIVELHLPN--SNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITXXX 58
FS+ + + EL L N SN + PI P L SLQ L L+ N F IP +L
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 59 XXXXXXXXX-QGDIPDGFASLNSLQLLDLSGNSFLEGQLSRN-LGTLCNLQTLKLSLNQF 116
G +P F S + L+ L LS N+F G+L + L + L+ L LS N+F
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF-SGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 117 RGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKN----LRYLELWYNSFLG 172
GE+ + + LS +SL L+L N +G PI +N L+ L L N F G
Sbjct: 356 SGELPESLTNLS-----ASLLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTG 408
Query: 173 SIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTS 232
IPP++ N + L L+L+ N ++G P S G LS +R L+L N EG I +
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-------- 460
Query: 233 LEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGA 292
EL +KT L L++ + L + P+ L N T L + L+
Sbjct: 461 --ELMYVKT------------------LETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Query: 293 SISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTL-VFRFPGSVDLSSNRFEGPLPLW-- 349
++ +P W +L L L + N SG IP L R +DL++N F G +P
Sbjct: 501 RLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559
Query: 350 ------SSNLTK----LYLRDNLF------SGPIPNDLGQKTPFLTDL------DISFNS 387
++N +Y++++ +G + G ++ L L +I+
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619
Query: 388 LNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSL 447
G + N ++ L +S N LSG IP+ + ++ L+IL++ N+ SG IP+ +G L
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 448 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIP 489
+ L LS+N L G IP ++ +++ +DL N LSG IP
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 149/506 (29%), Positives = 217/506 (42%), Gaps = 85/506 (16%)
Query: 184 LEELYLTSNQMNGKFPE--SFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKT 241
L L L+ N ++G S G S ++ L +S N + + L SLE L L +
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL--S 159
Query: 242 SNSSLSFNISFDWI---PPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTL 298
+NS N+ W+ +L++L I ++ + L L ++ + S +
Sbjct: 160 ANSISGANV-VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI 216
Query: 299 PSWFWQLNLTLDELDVGGNHLSGRIPNTL-VFRFPGSVDLSSNRFEGPLP-LWSSNLTKL 356
P F L LD+ GN LSG + +++SSN+F GP+P L +L L
Sbjct: 217 P--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274
Query: 357 YLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGI 416
L +N F+G IP+ L LT LD+S N G++P G+ L +L +S+NN SG +
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 417 P-QFLKNISSLYILDMTKNNFSGEIPESI----GSLLTIRF------------------- 452
P L + L +LD++ N FSGE+PES+ SLLT+
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 453 ----LVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNH 508
L L NN +G+IPP+L NCS + SL L N LSG IP+ +G S+ L L+L N
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNM 453
Query: 509 FNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGT 568
G IP EL + L L L N+L+G IP + + + +
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN-------------------- 493
Query: 569 QYVYQQTLYLMPVEXXXXXXXXXXXXXXXQLVGKIPTQIGKLEWLESLDLSRNKLSGSIP 628
+L G+IP IG+LE L L LS N SG+IP
Sbjct: 494 ----------------------WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 629 PSMVSIRXXXXXXXXXXXXXGEIPTA 654
+ R G IP A
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAA 557
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 97/235 (41%), Gaps = 39/235 (16%)
Query: 29 NFTSLQVLDLSNNGFNSTIPHWLFNITXXXXXXXXXXXXQGDIPDGFASLNSLQLLDLSG 88
N T+L + LSNN IP W+ + G+IP SL LDL+
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 89 NSF----------LEGQLSRN--------------LGTLCNLQTLKLSLNQFRGEVSDFI 124
N F G+++ N + C+ L R E + +
Sbjct: 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607
Query: 125 DGLSEC---------------INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNS 169
+ C N+ S+ L++ YN L+G +P +G + L L L +N
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667
Query: 170 FLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITE 224
GSIP +G+L L L L+SN+++G+ P++ L+ + ++LS+N G I E
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 111/204 (54%), Gaps = 8/204 (3%)
Query: 340 NRFEGPLPLWSSNLTKL---YLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSV 396
N GP+P + LT+L Y+ SG IP+ L Q +T LD S+N+L+G++P S+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT-LDFSYNALSGTLPPSI 145
Query: 397 GNLKQLLTLVISNNNLSGGIPQFLKNISSLYI-LDMTKNNFSGEIPESIGSLLTIRFLVL 455
+L L+ + N +SG IP + S L+ + +++N +G+IP + +L + F+ L
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 456 SNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPS 515
S N L G+ + + L +N L+ ++ +G S +L+ L LR+N GT+P
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSK-NLNGLDLRNNRIYGTLPQ 262
Query: 516 ELCKLSALHILDLSHNNLSGPIPH 539
L +L LH L++S NNL G IP
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 106/240 (44%), Gaps = 25/240 (10%)
Query: 392 IPQSVGNLKQLLTLVISN-NNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTI 450
IP S+ NL L L I NNL G IP + ++ L+ L +T N SG IP+ + + T+
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 451 RFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFN 510
L S N LSG +PPS+ + + + N++SG IP G + + + N
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 511 GTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQY 570
G IP L+ L +DLS N L G D + GS K TQ
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEG-----------------DASVLFGS----DKNTQK 225
Query: 571 VY--QQTLYLMPVEXXXXXXXXXXXXXXXQLVGKIPTQIGKLEWLESLDLSRNKLSGSIP 628
++ + +L + ++ G +P + +L++L SL++S N L G IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 112/309 (36%), Gaps = 86/309 (27%)
Query: 157 LKNLRYLELWY----NSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLE 212
L NL YL Y N+ +G IPP+I LT L LY+T ++G P
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP------------- 118
Query: 213 LSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGP 272
+ LS IKT L L Y L
Sbjct: 119 ---------------------DFLSQIKT------------------LVTLDFSYNALSG 139
Query: 273 KFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFP 332
P + + L + +G IS +P + + + + N L+G+IP T
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199
Query: 333 GSVDLSSNRFEGPLPLW---SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLN 389
VDLS N EG + N K++L N + DLG+
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF----DLGK---------------- 239
Query: 390 GSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLT 449
VG K L L + NN + G +PQ L + L+ L+++ NN GEIP+ G+L
Sbjct: 240 ------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQR 292
Query: 450 IRFLVLSNN 458
+NN
Sbjct: 293 FDVSAYANN 301
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 110/276 (39%), Gaps = 52/276 (18%)
Query: 142 GYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPES 201
G N L G +P ++ L L YL + + + G+IP + + L L + N ++G P S
Sbjct: 85 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 202 FGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLR 261
L + + N+ G I +++ S + TS ++S N IPP
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSY-------GSFSKLFTS-MTISRNRLTGKIPP---- 192
Query: 262 YLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSG 321
+ L F RN E VL G+ + + HL+
Sbjct: 193 ----TFANLNLAFVDLSRNMLEGDASVLFGS------------------DKNTQKIHLAK 230
Query: 322 RIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDL 381
N+L F G V L S NL L LR+N G +P L Q FL L
Sbjct: 231 ---NSLAFDL-GKVGL------------SKNLNGLDLRNNRIYGTLPQGLTQLK-FLHSL 273
Query: 382 DISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIP 417
++SFN+L G IPQ GNL++ +NN G P
Sbjct: 274 NVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 9/187 (4%)
Query: 32 SLQVLDLSNNGFNSTIPHWLFNITXXXXXXXXXXXXQGDIPDGFASLNSLQLLDLSGNSF 91
+L LD S N + T+P + ++ G IPD + S + L +
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 92 LEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP 151
L G++ L NL + LS N G+ S + + ++ L N L +L
Sbjct: 186 LTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFG------SDKNTQKIHLAKNSLAFDLG 238
Query: 152 ISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVL 211
+G KNL L+L N G++P + L FL L ++ N + G+ P+ G L V
Sbjct: 239 -KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296
Query: 212 ELSDNQW 218
++N+
Sbjct: 297 AYANNKC 303
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 21/149 (14%)
Query: 488 IPAWIGESMPSLSILRLRS-NHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSA 546
IP+ + +P L+ L + N+ G IP + KL+ LH L ++H N+SG IP +
Sbjct: 68 IPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 547 MKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVEXXXXXXXXXXXXXXXQLVGKIPTQ 606
+ G+L +I + T ++ G IP
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITF------------------DGNRISGAIPDS 168
Query: 607 IGKLEWL-ESLDLSRNKLSGSIPPSMVSI 634
G L S+ +SRN+L+G IPP+ ++
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANL 197
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 601 GKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRXXXXXXXXXXXXXGEIP 652
G IP + +++ L +LD S N LSG++PPS+ S+ G IP
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 599 LVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRXXXXXXXXXXXXXGEIP 652
LVG IP I KL L L ++ +SG+IP + I+ G +P
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 74 GFASLNSLQLLDLSGNS----FLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSE 129
G ++L LQ L L N F +++N+ +L +TL +SLN D
Sbjct: 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL---ETLDVSLNSLNSHAYD-----RT 423
Query: 130 CINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYL 189
C + S+ L L N LTG++ L ++ L+L +N+ + SIP + +L L+EL +
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL-HNNRIMSIPKDVTHLQALQELNV 480
Query: 190 TSNQMNGKFPESFGQLSAIRVLELSDNQWE 219
SNQ+ F +L++++ + L DN W+
Sbjct: 481 ASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 5/127 (3%)
Query: 424 SSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSL--KNCSLMDSLDLGE 481
SS L+ T+N F+ + + +L ++ L+L N L +L KN S +++LD+
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 482 NQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCV 541
N L+ + S+ +L L SN G++ C + +LDL HNN IP V
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--CLPPKVKVLDL-HNNRIMSIPKDV 469
Query: 542 GDFSAMK 548
A++
Sbjct: 470 THLQALQ 476
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 77/161 (47%), Gaps = 21/161 (13%)
Query: 75 FASLNSLQLLDLSGNSFLEGQLSR--NLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECIN 132
ASL +L LDL+ N Q+S L L L LKL NQ I +S
Sbjct: 235 LASLTNLTDLDLANN-----QISNLAPLSGLTKLTELKLGANQ--------ISNISPLAG 281
Query: 133 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSN 192
++L LEL NQL PIS LKNL YL L++N+ + I P + +LT L+ L+ ++N
Sbjct: 282 LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFSNN 337
Query: 193 QMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSL 233
+++ S L+ I L NQ A+L +T L
Sbjct: 338 KVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 78/159 (49%), Gaps = 17/159 (10%)
Query: 75 FASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSS 134
A+L +L+ LD+S N + + L L NL++L + NQ +SD I L N
Sbjct: 169 LANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQ----ISD-ITPLGILTN-- 218
Query: 135 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQM 194
L L L NQL +L L NL L+L N P + LT L EL L +NQ+
Sbjct: 219 -LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273
Query: 195 NGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSL 233
+ P L+A+ LEL++NQ E ++L+NLT L
Sbjct: 274 SNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYL 310
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 77/161 (47%), Gaps = 21/161 (13%)
Query: 75 FASLNSLQLLDLSGNSFLEGQLSR--NLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECIN 132
ASL +L LDL+ N Q+S L L L LKL NQ I +S
Sbjct: 234 LASLTNLTDLDLANN-----QISNLAPLSGLTKLTELKLGANQ--------ISNISPLAG 280
Query: 133 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSN 192
++L LEL NQL PIS LKNL YL L++N+ + I P + +LT L+ L+ ++N
Sbjct: 281 LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFSNN 336
Query: 193 QMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSL 233
+++ S L+ I L NQ A+L +T L
Sbjct: 337 KVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQL 375
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 78/159 (49%), Gaps = 17/159 (10%)
Query: 75 FASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSS 134
A+L +L+ LD+S N + + L L NL++L + NQ +SD I L N
Sbjct: 168 LANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQ----ISD-ITPLGILTN-- 217
Query: 135 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQM 194
L L L NQL +L L NL L+L N P + LT L EL L +NQ+
Sbjct: 218 -LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 272
Query: 195 NGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSL 233
+ P L+A+ LEL++NQ E ++L+NLT L
Sbjct: 273 SNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYL 309
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 74 GFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINS 133
F L L+LL L+ N L+ + L NL+TL ++ N+ + D L
Sbjct: 56 AFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV----- 109
Query: 134 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSI-GNLTFLEELYLTSN 192
+LA L L NQL P L L YL L YN L S+P + LT L+EL L +N
Sbjct: 110 -NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN 167
Query: 193 QMNGKFPE-SFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSL 238
Q+ + PE +F +L+ ++ L+L +NQ + + E +L L+ L L
Sbjct: 168 QLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQL 212
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 12/120 (10%)
Query: 103 LCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISL-GYLKNLR 161
L NL L+L NQ + D L++ L L LGYN+L +LP + L +L+
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTK------LTYLSLGYNELQ-SLPKGVFDKLTSLK 160
Query: 162 YLELWYNSFLGSIPP-SIGNLTFLEELYLTSNQMNGKFPE-SFGQLSAIRVLELSDNQWE 219
L L YN+ L +P + LT L+ L L +NQ+ + PE +F L +++L+L +N W+
Sbjct: 161 ELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD 218
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 13/187 (6%)
Query: 334 SVDLSSNRFEGPLPLWSSNLTKL---YLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNG 390
+DL SN+ LTKL YL DN +P + ++ L L ++ N L
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ- 98
Query: 391 SIPQSVGNLKQLLTLV---ISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESI-GS 446
++P +G QL+ L + N L P+ +++ L L + N +P+ +
Sbjct: 99 ALP--IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDK 155
Query: 447 LLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRS 506
L +++ L L NN L + + + +L L NQL +P +S+ L +L+L+
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQE 214
Query: 507 NHFNGTI 513
N ++ T
Sbjct: 215 NPWDCTC 221
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 75 FASLNSLQLLDLSGNSFLEGQLSR--NLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECIN 132
ASL +L LDL+ N Q+S L L L LKL NQ I +S
Sbjct: 238 LASLTNLTDLDLANN-----QISNLAPLSGLTKLTELKLGANQ--------ISNISPLAG 284
Query: 133 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSN 192
++L LEL NQL PIS LKNL YL L++N+ + I P + +LT L+ L+ +N
Sbjct: 285 LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFANN 340
Query: 193 QMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSL 233
+++ S L+ I L NQ A+L +T L
Sbjct: 341 KVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQL 379
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 78/159 (49%), Gaps = 17/159 (10%)
Query: 75 FASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSS 134
A+L +L+ LD+S N + + L L NL++L + NQ +SD I L N
Sbjct: 172 LANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQ----ISD-ITPLGILTN-- 221
Query: 135 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQM 194
L L L NQL +L L NL L+L N P + LT L EL L +NQ+
Sbjct: 222 -LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 276
Query: 195 NGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSL 233
+ P L+A+ LEL++NQ E ++L+NLT L
Sbjct: 277 SNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYL 313
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 78/159 (49%), Gaps = 17/159 (10%)
Query: 75 FASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSS 134
A+L +L+ LD+S N + + L L NL++L + NQ +SD I L N
Sbjct: 169 LANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQ----ISD-ITPLGILTN-- 218
Query: 135 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQM 194
L L L NQL +L L NL L+L N P + LT L EL L +NQ+
Sbjct: 219 -LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273
Query: 195 NGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSL 233
+ P L+A+ LEL++NQ E ++L+NLT L
Sbjct: 274 SNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYL 310
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 116/269 (43%), Gaps = 31/269 (11%)
Query: 276 TWLRNQTELTTLVLNGASISDTLPSWFWQLNLT-LDELDVGGNHLSGRIPNTLVFRFPGS 334
T L+N T+L +++N I+D P NLT L L + N ++ P +
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITPLA----NLTNLTGLTLFNNQITDIDPLKNLTNL-NR 133
Query: 335 VDLSSNRFEGPLPLWS-SNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIP 393
++LSSN L ++L +L N + P L T L LDIS N + S
Sbjct: 134 LELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTT-LERLDISSNKV--SDI 188
Query: 394 QSVGNLKQLLTLVISNNNLSGGIP-QFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRF 452
+ L L +L+ +NN +S P L N+ L + +G + IG+L ++
Sbjct: 189 SVLAKLTNLESLIATNNQISDITPLGILTNLDEL--------SLNGNQLKDIGTLASLTN 240
Query: 453 LV---LSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHF 509
L L+NN +S P L + + L LG NQ+S NI G + +L+ L L N
Sbjct: 241 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISPLAG--LTALTNLELNENQL 295
Query: 510 NGTIPSELCKLSALHILDLSHNNLSGPIP 538
P + L L L L NN+S P
Sbjct: 296 EDISP--ISNLKNLTYLTLYFNNISDISP 322
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 78/159 (49%), Gaps = 17/159 (10%)
Query: 75 FASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSS 134
A+L +L+ LD+S N + + L L NL++L + NQ +SD I L N
Sbjct: 169 LANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQ----ISD-ITPLGILTN-- 218
Query: 135 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQM 194
L L L NQL +L L NL L+L N P + LT L EL L +NQ+
Sbjct: 219 -LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273
Query: 195 NGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSL 233
+ P L+A+ LEL++NQ E ++L+NLT L
Sbjct: 274 SNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYL 310
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 115/270 (42%), Gaps = 33/270 (12%)
Query: 276 TWLRNQTELTTLVLNGASISDTLPSWFWQLNLT-LDELDVGGNHLSGRIPNTLVFRFPGS 334
T L+N T+L +++N I+D P NLT L L + N ++ P +
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITPLA----NLTNLTGLTLFNNQITDIDPLKNLTNL-NR 133
Query: 335 VDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLG--QKTPFLTDLDISFNSLNGSI 392
++LSSN L S LT L + FS DL L LDIS N + S
Sbjct: 134 LELSSNTISDISAL--SGLTSLQQLN--FSSNQVTDLKPLANLTTLERLDISSNKV--SD 187
Query: 393 PQSVGNLKQLLTLVISNNNLSGGIP-QFLKNISSLYILDMTKNNFSGEIPESIGSLLTIR 451
+ L L +L+ +NN +S P L N+ L + +G + IG+L ++
Sbjct: 188 ISVLAKLTNLESLIATNNQISDITPLGILTNLDEL--------SLNGNQLKDIGTLASLT 239
Query: 452 FLV---LSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNH 508
L L+NN +S P L + + L LG NQ+S NI G + +L+ L L N
Sbjct: 240 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISPLAG--LTALTNLELNENQ 294
Query: 509 FNGTIPSELCKLSALHILDLSHNNLSGPIP 538
P + L L L L NN+S P
Sbjct: 295 LEDISP--ISNLKNLTYLTLYFNNISDISP 322
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 78/159 (49%), Gaps = 17/159 (10%)
Query: 75 FASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSS 134
A+L +L+ LD+S N + + L L NL++L + NQ +SD I L N
Sbjct: 173 LANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQ----ISD-ITPLGILTN-- 222
Query: 135 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQM 194
L L L NQL +L L NL L+L N P + LT L EL L +NQ+
Sbjct: 223 -LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277
Query: 195 NGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSL 233
+ P L+A+ LEL++NQ E ++L+NLT L
Sbjct: 278 SNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYL 314
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 78/159 (49%), Gaps = 17/159 (10%)
Query: 75 FASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSS 134
A+L +L+ LD+S N + + L L NL++L + NQ +SD I L N
Sbjct: 168 LANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQ----ISD-ITPLGILTN-- 217
Query: 135 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQM 194
L L L NQL +L L NL L+L N P + LT L EL L +NQ+
Sbjct: 218 -LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 272
Query: 195 NGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSL 233
+ P L+A+ LEL++NQ E ++L+NLT L
Sbjct: 273 SNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYL 309
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 117/452 (25%), Positives = 185/452 (40%), Gaps = 62/452 (13%)
Query: 70 DIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSE 129
+IPD N+ + L+ S N FL +R L NL L L+ Q D +
Sbjct: 23 EIPDTLP--NTTEFLEFSFN-FLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQ 79
Query: 130 CINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYN--SFLGSIPPSIGNLTFLEEL 187
L+ L L N L SL K+L++L L S L IP + NL LE L
Sbjct: 80 ------LSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIP--VHNLENLESL 131
Query: 188 YLTSNQMNG-KFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSL 246
YL SN ++ KFP+ F + ++VL+ +N +I+ +R SL + N SL
Sbjct: 132 YLGSNHISSIKFPKDFPARN-LKVLDFQNNAIH-YISREDMR--------SLEQAINLSL 181
Query: 247 SFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRN----QTELTTLVLNGASISDTLPSWF 302
+FN + ++ +LG T ++ T +++ NG S T W
Sbjct: 182 NFNGN------------NVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWL 229
Query: 303 WQLNLTLDELDVGGNHLSGRIP------NTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKL 356
+D+ D+ L G N RF D+SS F+ L +LT
Sbjct: 230 GTFE-DIDDEDISSAMLKGLCEMSVESLNLQEHRFS---DISSTTFQCFTQLQELDLTAT 285
Query: 357 YLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNN--NLSG 414
+L+ +P+ + + L L +S N + S N L L I N L
Sbjct: 286 HLKG------LPSGM-KGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHL 338
Query: 415 GIPQFLKNISSLYILDMTKNNFSGEIPESI--GSLLTIRFLVLSNNHLSGEIPPSLKNCS 472
G+ L+ + +L LD++ N+ S+ +L ++ L LS+N G + K C
Sbjct: 339 GVG-CLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECP 397
Query: 473 LMDSLDLGENQLSGNIPAWIGESMPSLSILRL 504
++ LDL +L N P +++ L +L L
Sbjct: 398 QLELLDLAFTRLHINAPQSPFQNLHFLQVLNL 429
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 156/388 (40%), Gaps = 72/388 (18%)
Query: 161 RYLELWYNSFLGSIP----PSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDN 216
+LE +N FL +I + NLTFL+ LT Q+N ++F + L L+ N
Sbjct: 33 EFLEFSFN-FLPTIHNRTFSRLMNLTFLD---LTRCQINWIHEDTFQSHHQLSTLVLTGN 88
Query: 217 QWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPT 276
F+ E L SL+ L LI+T S+L F IP
Sbjct: 89 PL-IFMAETSLNGPKSLKHLFLIQTGISNLEF------IP-------------------- 121
Query: 277 WLRNQTELTTLVLNGASISD-TLPSWFWQLNL-TLDELDVGGNHLSGRIPNTLVFRFPGS 334
+ N L +L L IS P F NL LD + +++S +L S
Sbjct: 122 -VHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLS 180
Query: 335 VDLSSNRFEG-PLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIP 393
++ + N +G L + S + + +L G PN L + FN L S
Sbjct: 181 LNFNGNNVKGIELGAFDSTIFQ-----SLNFGGTPN-----------LSVIFNGLQNSTT 224
Query: 394 QSV--GNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIR 451
QS+ G + I + ++S + + L +S + L++ ++ FS + ++
Sbjct: 225 QSLWLGTFED-----IDDEDISSAMLKGLCEMS-VESLNLQEHRFSDISSTTFQCFTQLQ 278
Query: 452 FLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN---- 507
L L+ HL G +P +K +L+ L L N + + PSL+ L +R N
Sbjct: 279 ELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFD-QLCQISAANFPSLTHLYIRGNVKKL 336
Query: 508 HFNGTIPSELCKLSALHILDLSHNNLSG 535
H L KL L LDLSHN++
Sbjct: 337 HLGVGC---LEKLGNLQTLDLSHNDIEA 361
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 9/147 (6%)
Query: 74 GFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINS 133
L +L L L+GN L+ + L NL+ L L NQ + D L+
Sbjct: 80 ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT----- 133
Query: 134 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSI-GNLTFLEELYLTSN 192
+L L L +NQL L NL L+L YN L S+P + LT L++L L N
Sbjct: 134 -NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQN 191
Query: 193 QMNGKFPESFGQLSAIRVLELSDNQWE 219
Q+ F +L++++ + L DN W+
Sbjct: 192 QLKSVPDGVFDRLTSLQYIWLHDNPWD 218
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 25/209 (11%)
Query: 360 DNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQF 419
D+ F+ I +L +K+ +TD ++ N LN SI Q + N + ++ GI Q+
Sbjct: 15 DDAFAETIKANLKKKS--VTDA-VTQNELN-SIDQIIANNSDIKSV--------QGI-QY 61
Query: 420 LKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDL 479
L N+ L + ++ S ++ L + +L+L+ N L + + L L
Sbjct: 62 LPNVRYLALGGNKLHDIS-----ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 480 GENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPH 539
ENQL +P + + + +L+ L L N KL+ L LDLS+N L +P
Sbjct: 117 VENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPE 174
Query: 540 CVGD-FSAMKVKPPDTEIYQGSLQVAIKG 567
V D + +K D +YQ L+ G
Sbjct: 175 GVFDKLTQLK----DLRLYQNQLKSVPDG 199
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 154 LGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLEL 213
+ YL N+RYL L N L I ++ LT L L LT NQ+ F +L+ ++ L L
Sbjct: 59 IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 214 SDNQWEGFITEAHLRNLTSLEELSLIKTSNSSL 246
+NQ + + + LT+L L+L SL
Sbjct: 117 VENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSL 148
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 352 NLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNN 411
++T+LYL N F+ +P +L LT +D+S N ++ QS N+ QLLTL++S N
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 412 LSGGIPQFLKNISSLYILDMTKNNFSGEIPE 442
L P+ + SL +L + N+ S +PE
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDIS-VVPE 119
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 392 IPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIR 451
+P+ + N K L + +SNN +S Q N++ L L ++ N P + L ++R
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 452 FLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQL 484
L L N +S + + S + L +G N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 8 IVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITXXXXXXXXXXXX 67
+ EL+L + ++P N+ L ++DLSNN ++ N+T
Sbjct: 33 VTELYLDGNQFTLVPKELS--NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 68 QGDIPDGFASLNSLQLLDLSGNSF 91
+ P F L SL+LL L GN
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDI 114
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 19/177 (10%)
Query: 353 LTKLYLR----DNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVIS 408
L +L LR N+ S P P Q LT LD+S N++ + L++L L +
Sbjct: 456 LQRLMLRRVALKNVDSSPSP---FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512
Query: 409 NNNLS--------GGIPQFLKNISSLYILDMTKNNFSGEIP-ESIGSLLTIRFLVLSNNH 459
+NNL+ GG FLK +S L+IL++ N F EIP E L ++ + L N+
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNN 571
Query: 460 LSGEIPPSLKNCSL-MDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPS 515
L+ +P S+ N + + SL+L +N ++ G + +L+ L +R N F+ T S
Sbjct: 572 LNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 19/177 (10%)
Query: 353 LTKLYLR----DNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVIS 408
L +L LR N+ S P P Q LT LD+S N++ + L++L L +
Sbjct: 461 LQRLMLRRVALKNVDSSPSP---FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 517
Query: 409 NNNLS--------GGIPQFLKNISSLYILDMTKNNFSGEIP-ESIGSLLTIRFLVLSNNH 459
+NNL+ GG FLK +S L+IL++ N F EIP E L ++ + L N+
Sbjct: 518 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNN 576
Query: 460 LSGEIPPSLKNCSL-MDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPS 515
L+ +P S+ N + + SL+L +N ++ G + +L+ L +R N F+ T S
Sbjct: 577 LNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 632
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 19/177 (10%)
Query: 353 LTKLYLR----DNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVIS 408
L +L LR N+ S P P Q LT LD+S N++ + L++L L +
Sbjct: 466 LQRLMLRRVALKNVDSSPSP---FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 522
Query: 409 NNNLS--------GGIPQFLKNISSLYILDMTKNNFSGEIP-ESIGSLLTIRFLVLSNNH 459
+NNL+ GG FLK +S L+IL++ N F EIP E L ++ + L N+
Sbjct: 523 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNN 581
Query: 460 LSGEIPPSLKNCSL-MDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPS 515
L+ +P S+ N + + SL+L +N ++ G + +L+ L +R N F+ T S
Sbjct: 582 LNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 637
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 14/168 (8%)
Query: 74 GFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINS 133
G L +++ L L GN + L L NL L L+ NQ + + D L+
Sbjct: 58 GIQYLPNVRYLALGGNKLHD---ISALKELTNLTYLILTGNQLQSLPNGVFDKLT----- 109
Query: 134 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSI-GNLTFLEELYLTSN 192
+L L L NQL L NL YL L++N L S+P + LT L L L +N
Sbjct: 110 -NLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQ-LQSLPKGVFDKLTNLTRLDLDNN 167
Query: 193 QMNGKFPES-FGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLI 239
Q+ PE F +L+ ++ L L+DNQ + + + LTSL + L+
Sbjct: 168 QLQS-LPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLL 213
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
Query: 74 GFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINS 133
L +L L L+GN L+ + L NL+ L L NQ + D L+
Sbjct: 80 ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT----- 133
Query: 134 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSI-GNLTFLEELYLTSN 192
+L L L +NQL L NL L+L N+ L S+P + LT L++L L N
Sbjct: 134 -NLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFDKLTQLKQLSLNDN 191
Query: 193 QMNGKFPESFGQLSAIRVLELSDNQWEGFITE 224
Q+ F +L+++ + L +N W+ ++
Sbjct: 192 QLKSVPDGVFDRLTSLTHIWLLNNPWDCACSD 223
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 129/514 (25%), Positives = 204/514 (39%), Gaps = 98/514 (19%)
Query: 74 GFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSE---- 129
F S LQ+LDLS ++ +L +L TL L+ N + GLS
Sbjct: 47 SFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 130 CINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYN---SFLGSIPPSIGNLTFLEE 186
++LA LE N PI G+LK L+ L + +N SF +P NLT LE
Sbjct: 106 VAVETNLASLE--------NFPI--GHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEH 153
Query: 187 LYLTSNQMNGKF----------------------PESF---GQLSAIRVLELS-DNQWEG 220
L L+SN++ + P +F G IR+ +L+ N ++
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS 213
Query: 221 F-ITEAHLRNLTSLE-----------ELSLIKTSNSSLS--FNISFDWIPPFKLRYLVIR 266
+ + ++ L LE E +L K S+L N++ I F+L YL
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT---IEEFRLAYLDYY 270
Query: 267 YYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQ----LNLTLDEL---------- 312
+ F L N + + + + + D ++ WQ +N +
Sbjct: 271 LDDIIDLF-NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329
Query: 313 -----DVGGNHLSGRIPNTLVFRFPGSVDLSSN--RFEGPLPLWSSNLTKLYLRDNLFSG 365
+ GGN S +L F +DLS N F+G T L D F+G
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEF-----LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384
Query: 366 PIP---NDLGQKTPFLTDLDISFNSLNGSIPQSVG-NLKQLLTLVISNNNLSGGIPQFLK 421
I N LG + L LD ++L SV +L+ L+ L IS+ +
Sbjct: 385 VITMSSNFLGLEQ--LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 422 NISSLYILDMTKNNFSGE-IPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLG 480
+SSL +L M N+F +P+ L + FL LS L P + + S + L++
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502
Query: 481 ENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIP 514
NQL +P I + + SL + L +N ++ + P
Sbjct: 503 SNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 10/198 (5%)
Query: 25 FPSLNFTSLQVLDLSNNG--FNSTIPHWLFNITXXXXXXXXXXXXQGDIPDGFASLNSLQ 82
F ++ SL+ LDLS NG F F T + F L L+
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLE 399
Query: 83 LLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELG 142
LD ++ + +L NL L +S R + +GLS SL L++
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS------SLEVLKMA 453
Query: 143 YNQLTGN-LPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPES 201
N N LP L+NL +L+L P + +L+ L+ L + SNQ+
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513
Query: 202 FGQLSAIRVLELSDNQWE 219
F +L++++ + L N W+
Sbjct: 514 FDRLTSLQKIWLHTNPWD 531
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 13/149 (8%)
Query: 71 IPDGFASLNSLQLLDLSGNSFLEGQLSR-NLGTLCNLQTLKLSLNQFRGEVSDFIDGLSE 129
+P G +NSL+ L L+ NSF QL + N + +L+ L + N + +D +
Sbjct: 292 LPSGIEGMNSLKKLVLNANSF--DQLCQINAASFPSLRDLYIKGNMRK------LDLGTR 343
Query: 130 CINS-SSLARLELGYNQLTGN--LPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEE 186
C+ +L +L+L ++ + + + L L++L+YL L YN LG + LE
Sbjct: 344 CLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLEL 403
Query: 187 LYLTSNQMNGKFPES-FGQLSAIRVLELS 214
L + ++ K P S F L +RVL LS
Sbjct: 404 LDVAFTHLHVKAPHSPFQNLHLLRVLNLS 432
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 138/336 (41%), Gaps = 33/336 (9%)
Query: 103 LCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRY 162
LC++ ++L + R SD C + + L+L L G LP + + +L+
Sbjct: 250 LCDMSVESINLQKHR--FSDLSSSTFRCF--TRVQELDLTAAHLNG-LPSGIEGMNSLKK 304
Query: 163 LELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKF-PESFGQLSAIRVLELSDNQWEGF 221
L L NSF + + L +LY+ N +L ++ L+LS + E
Sbjct: 305 LVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEAS 364
Query: 222 -ITEAHLRNLTSLEELSLIKTSNSSLSF-NISFDWIPPFKLRYLVIRYYQLGPKFPTWLR 279
L+NL L+ L+L + N L + +F P +L L + + L K P
Sbjct: 365 DCCNLQLKNLRHLQYLNL--SYNEPLGLEDQAFKECP--QLELLDVAFTHLHVKAPHSPF 420
Query: 280 NQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHL-SGRIPNTLVFRFPGSVDLS 338
L ++ + DT L L++ GN G I T + + GS+++
Sbjct: 421 QNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEI- 479
Query: 339 SNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGN 398
L L S NL L + F G + N + LD+S NSL G ++ +
Sbjct: 480 -------LILSSCNL--LSIDQQAFHG-LRN--------VNHLDLSHNSLTGDSMDALSH 521
Query: 399 LKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKN 434
LK L L +++NN+ P L +S I++++ N
Sbjct: 522 LKGLY-LNMASNNIRIIPPHLLPALSQQSIINLSHN 556
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 97/393 (24%), Positives = 160/393 (40%), Gaps = 38/393 (9%)
Query: 178 IGNLTFLEELYLTSNQMNG-KFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEEL 236
+ NL LE L+L SN ++ PE+F ++VL+ +N +I+ +L L
Sbjct: 124 VHNLENLESLHLGSNHISSINLPENFPT-QNLKVLDFQNNAIH-YISRKDTNSLEQATNL 181
Query: 237 SLIKTSNS---------------SLSFNISFDWIPPFK-LRYLVIRYYQLGPKFPT---W 277
SL N SL F S + FK L+ ++ LG T +
Sbjct: 182 SLNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQY 241
Query: 278 LRNQT-------ELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFR 330
L + T + ++ L SD L S ++ + ELD+ HL+G
Sbjct: 242 LTSATFEGLCDMSVESINLQKHRFSD-LSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMN 300
Query: 331 FPGSVDLSSNRFEGPLPLWSSN---LTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNS 387
+ L++N F+ + +++ L LY++ N+ + +K L LD+S +
Sbjct: 301 SLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSD 360
Query: 388 LNGS--IPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPES-I 444
+ S + NL+ L L +S N G Q K L +LD+ + + P S
Sbjct: 361 IEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPF 420
Query: 445 GSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQL-SGNIPAW-IGESMPSLSIL 502
+L +R L LS+ L L + L+L N G+I + + + SL IL
Sbjct: 421 QNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEIL 480
Query: 503 RLRSNHFNGTIPSELCKLSALHILDLSHNNLSG 535
L S + L ++ LDLSHN+L+G
Sbjct: 481 ILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 102 TLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLR 161
+L NL+ L L NQ D L++ L L+LG NQLT L +L+
Sbjct: 62 SLINLKELYLGSNQLGALPVGVFDSLTQ------LTVLDLGTNQLTVLPSAVFDRLVHLK 115
Query: 162 YLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 219
L + N L +P I LT L L L NQ+ +F +LS++ L N W+
Sbjct: 116 ELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 411 NLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSL-K 469
++ GIP N LY+ D N + P SL+ ++ L L +N L G +P +
Sbjct: 33 SVPAGIPT---NAQILYLHD---NQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFD 85
Query: 470 NCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLS 529
+ + + LDLG NQL+ +P+ + + + L L + N +P + +L+ L L L
Sbjct: 86 SLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143
Query: 530 HNNLSGPIPH 539
N L IPH
Sbjct: 144 QNQLKS-IPH 152
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 152 ISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVL 211
+ G N + L L N P +L L+ELYL SNQ+ F L+ + VL
Sbjct: 34 VPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL 93
Query: 212 ELSDNQWEGFITEAHLRNLTSLEEL 236
+L NQ + A L L+EL
Sbjct: 94 DLGTNQLT-VLPSAVFDRLVHLKEL 117
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 1 IFSKLPSIVELHLPNSNLPILPIH-FPSLNFTSLQVLDLSNNGFNSTIPHWLFNITXXXX 59
+F L ++ EL+L ++ L LP+ F SL T L VLDL N + +P +F+
Sbjct: 59 VFDSLINLKELYLGSNQLGALPVGVFDSL--TQLTVLDLGTNQL-TVLPSAVFDRLVHLK 115
Query: 60 XXXXXXXXQGDIPDGFASLNSLQLLDLSGNSF 91
++P G L L L L N
Sbjct: 116 ELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 31/171 (18%)
Query: 375 TPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLS--GGIPQFLKNISSLYILDMT 432
+PFL LD S N L ++ ++ G+L +L TL++ N L I + + SL LD++
Sbjct: 324 SPFL-HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382
Query: 433 KNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWI 492
+N+ S + E G + L+ SL++ N L+ I +
Sbjct: 383 QNSVSYD--EKKGDCSWTKSLL---------------------SLNMSSNILTDTIFRCL 419
Query: 493 GESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGD 543
P + +L L SN +IP ++ KL AL L+++ N L +P + D
Sbjct: 420 P---PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKS-VPDGIFD 465
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 25/157 (15%)
Query: 84 LDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFR-----GEVSDFIDGLSE--------- 129
LD S N L + N G L L+TL L +NQ + E++ + L +
Sbjct: 329 LDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 130 -------CINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLT 182
C + SL L + N LT + L ++ L+L N + SIP + L
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLE 444
Query: 183 FLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 219
L+EL + SNQ+ F +L++++ + L N W+
Sbjct: 445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 103 LCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRY 162
L NLQ +S N F+ DF L RL L N LT LP + L NLR
Sbjct: 231 LSNLQIFNISANIFK---YDF------------LTRLYLNGNSLT-ELPAEIKNLSNLRV 274
Query: 163 LELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 219
L+L +N L S+P +G+ L+ Y N M P FG L ++ L + N E
Sbjct: 275 LDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 402 LLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLS 461
LT + N N +P +KN+S+L +LD++ N + +P +GS +++ +N ++
Sbjct: 248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Query: 462 GEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSE 516
+P N + L + N L + E + I LR N +P E
Sbjct: 307 T-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 23/206 (11%)
Query: 74 GFASLNSLQLLDLSGNSF--LEGQLSRNLGTLCNLQTLKLSLNQFRG------------E 119
F+ LNSL+ L L + + + +L L L+ L++N R E
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206
Query: 120 VSD--FIDGLS-ECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPP 176
+S ++D ++ C+ +L L + + LT +++ +L LR+L L YN
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266
Query: 177 SIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEEL 236
+ L L+E+ L Q+ P +F L+ +RVL +S NQ + E+ ++ +LE L
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETL 325
Query: 237 SLIKTSNSSLSFNISFDWIPPFKLRY 262
L ++ L+ + W+ F+ R+
Sbjct: 326 IL---DSNPLACDCRLLWV--FRRRW 346
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 111/476 (23%), Positives = 194/476 (40%), Gaps = 98/476 (20%)
Query: 119 EVSDFIDGLSECINS------SSLARLELGYNQLTGNLPISLGYLKNLRYLEL---WYNS 169
+ S DG S S +++ L+L +N++T L NL+ L L N+
Sbjct: 31 DASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 90
Query: 170 FLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRN 229
G S+G+L E L L+ N ++ FG LS+++ L L N ++ + N
Sbjct: 91 IEGDAFYSLGSL---EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 147
Query: 230 LTSLEELSLIKTSNSSLSFNISFDWIP---PFKLRYLVIRYYQLGPKFPTWLRNQTELTT 286
LT+L+ L + S I F + +++ L +R YQ + +R+ LT
Sbjct: 148 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ--SQSLKSIRDIHHLTL 205
Query: 287 LVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFE-GP 345
+ A + L++ + LS R+ D + RF+ P
Sbjct: 206 HLSESAFL-----------------LEIFADILSS-------VRYLELRDTNLARFQFSP 241
Query: 346 LPL--WSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDL-DISFN--SLNG---------- 390
LP+ SS + KL R ++ + N+L + ++ +L ++ F+ +LNG
Sbjct: 242 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 301
Query: 391 ----------------SIPQ--------SVGNLKQLLTLVISNNNLSGGIP-QFLKNISS 425
IPQ +V +L + + + N+ +P F +++ S
Sbjct: 302 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 361
Query: 426 LYILDMTKNNFSGEI---PESIGSLLTIRFLVLSNNHL-----SGEIPPSLKNCSLMDSL 477
L LD+++N E G+ +++ LVLS NHL +GEI +LKN + SL
Sbjct: 362 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN---LTSL 418
Query: 478 DLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 533
D+ N + +S +R + G + C L +LD+S+NNL
Sbjct: 419 DISRNTFHP-----MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL 469
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 137/542 (25%), Positives = 212/542 (39%), Gaps = 103/542 (19%)
Query: 74 GFASLNSLQLLDLSGNSFLEGQLSRN--LGTLCNLQTLKLSLNQFRGEVSDFIDGLSE-- 129
F S LQ+LDLS E Q + +L +L TL L+ N + GLS
Sbjct: 47 SFFSFPELQVLDLSR---CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103
Query: 130 --CINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYN---SFLGSIPPSIGNLTFL 184
++LA LE N PI G+LK L+ L + +N SF +P NLT L
Sbjct: 104 KLVAVETNLASLE--------NFPI--GHLKTLKELNVAHNLIQSF--KLPEYFSNLTNL 151
Query: 185 EELYLTSNQMNGKF----------------------PESF---GQLSAIRVLELS-DNQW 218
E L L+SN++ + P +F G IR+ +L+ N +
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211
Query: 219 EGF-ITEAHLRNLTSLE-----------ELSLIKTSNSSLS--FNISFDWIPPFKLRYLV 264
+ + + ++ L LE E +L K S+L N++ I F+L YL
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT---IEEFRLAYLD 268
Query: 265 IRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQL------------NLTLDEL 312
+ F L N + + + + + D ++ WQ L L L
Sbjct: 269 YYLDDIIDLF-NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327
Query: 313 -------DVGGNHLSGRIPNTLVFRFPGSVDLSSN--RFEGPLPLWSSNLTKLYLRDNLF 363
+ GGN S +L F +DLS N F+G T L D F
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEF-----LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 364 SGPI---PNDLGQKTPFLTDLDISFNSLNGSIPQSVG-NLKQLLTLVISNNNLSGGIPQF 419
+G I N LG + L LD ++L SV +L+ L+ L IS+ +
Sbjct: 383 NGVITMSSNFLGLEQ--LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 420 LKNISSLYILDMTKNNFSGE-IPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLD 478
+SSL +L M N+F +P+ L + FL LS L P + + S + L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 479 LGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKL-SALHILDLSHNNLSGPI 537
+ N + + + + SL +L NH + EL S+L L+L+ N+ +
Sbjct: 501 MSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 559
Query: 538 PH 539
H
Sbjct: 560 EH 561
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 36/198 (18%)
Query: 25 FPSLNFTSLQVLDLSNNGFNSTIPHWLFNITXXXXXXXXXXXXQGDIPDGFASLNSLQLL 84
F ++ SL+ LDLS NG + +G SL+ L
Sbjct: 341 FSEVDLPSLEFLDLSRNGLS----------------------FKGCCSQSDFGTTSLKYL 378
Query: 85 DLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYN 144
DLS N + +S N L L+ L + + ++S+F S ++ +L L++ +
Sbjct: 379 DLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLK-QMSEF----SVFLSLRNLIYLDISHT 431
Query: 145 QLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSI----GNLTFLEELYLTSNQMNGKFPE 200
L +L L++ NSF + P I NLTFL+ L+ Q+ P
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD---LSQCQLEQLSPT 488
Query: 201 SFGQLSAIRVLELSDNQW 218
+F LS+++VL +S N +
Sbjct: 489 AFNSLSSLQVLNMSHNNF 506
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 8/179 (4%)
Query: 70 DIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSE 129
++PD L+ L L+ N L ++ +L L+ L + E+ + +
Sbjct: 118 ELPDTXQQFAGLETLTLARNPL--RALPASIASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 130 CINSSSLARLELGYNQLTG--NLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEEL 187
L L+ + TG +LP S+ L+NL+ L++ NS L ++ P+I +L LEEL
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKI-RNSPLSALGPAIHHLPKLEEL 234
Query: 188 YLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFIT-EAHLRNLTSLEELSLIKTSNSS 245
L +P FG + ++ L L D +T + LT LE+L L N S
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKD--CSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 136/543 (25%), Positives = 213/543 (39%), Gaps = 105/543 (19%)
Query: 74 GFASLNSLQLLDLSGNSFLEGQLSRN--LGTLCNLQTLKLSLNQFRGEVSDFIDGLSE-- 129
F S LQ+LDLS E Q + +L +L TL L+ N + GLS
Sbjct: 71 SFFSFPELQVLDLSR---CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127
Query: 130 --CINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYN---SFLGSIPPSIGNLTFL 184
++LA LE N PI G+LK L+ L + +N SF +P NLT L
Sbjct: 128 KLVAVETNLASLE--------NFPI--GHLKTLKELNVAHNLIQSF--KLPEYFSNLTNL 175
Query: 185 EELYLTSNQMNGKF----------------------PESF---GQLSAIRVLELS-DNQW 218
E L L+SN++ + P +F G IR+ +L+ N +
Sbjct: 176 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 235
Query: 219 EGF-ITEAHLRNLTSLE-----------ELSLIKTSNSSLS--FNISFDWIPPFKLRYLV 264
+ + + ++ L LE E +L K S+L N++ I F+L YL
Sbjct: 236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT---IEEFRLAYL- 291
Query: 265 IRYYQLG-PKFPTWLRNQTELTTLVLNGASISDTLPSWFWQ----LNLTLDEL------- 312
YY G L N + + + + + D ++ WQ +N +
Sbjct: 292 -DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 350
Query: 313 --------DVGGNHLSGRIPNTLVFRFPGSVDLSSN--RFEGPLPLWSSNLTKLYLRDNL 362
+ GGN S +L F +DLS N F+G L D
Sbjct: 351 LKRLTFTSNKGGNAFSEVDLPSLEF-----LDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405
Query: 363 FSGPI---PNDLGQKTPFLTDLDISFNSLNGSIPQSVG-NLKQLLTLVISNNNLSGGIPQ 418
F+G I N LG + L LD ++L SV +L+ L+ L IS+ +
Sbjct: 406 FNGVITMSSNFLGLEQ--LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 463
Query: 419 FLKNISSLYILDMTKNNFSGE-IPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSL 477
+SSL +L M N+F +P+ L + FL LS L P + + S + L
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
Query: 478 DLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKL-SALHILDLSHNNLSGP 536
++ N ++ + + + SL +L NH + EL S+L L+L+ N+ +
Sbjct: 524 NMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582
Query: 537 IPH 539
H
Sbjct: 583 CEH 585
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 36/198 (18%)
Query: 25 FPSLNFTSLQVLDLSNNGFNSTIPHWLFNITXXXXXXXXXXXXQGDIPDGFASLNSLQLL 84
F ++ SL+ LDLS NG + Q D F ++ SL+ L
Sbjct: 365 FSEVDLPSLEFLDLSRNGLS-----------------FKGCCSQSD----FGTI-SLKYL 402
Query: 85 DLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYN 144
DLS N + +S N L L+ L + + ++S+F S ++ +L L++ +
Sbjct: 403 DLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLK-QMSEF----SVFLSLRNLIYLDISHT 455
Query: 145 QLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSI----GNLTFLEELYLTSNQMNGKFPE 200
L +L L++ NSF + P I NLTFL+ L+ Q+ P
Sbjct: 456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD---LSQCQLEQLSPT 512
Query: 201 SFGQLSAIRVLELSDNQW 218
+F LS+++VL +S N +
Sbjct: 513 AFNSLSSLQVLNMSHNNF 530
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 112/475 (23%), Positives = 193/475 (40%), Gaps = 96/475 (20%)
Query: 119 EVSDFIDGLSECINS------SSLARLELGYNQLTGNLPISLGYLKNLRYLEL---WYNS 169
+ S DG S S +++ L+L +N++T L NL+ L L N+
Sbjct: 5 DASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64
Query: 170 FLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRN 229
G S+G+L E L L+ N ++ FG LS+++ L L N ++ + N
Sbjct: 65 IEGDAFYSLGSL---EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121
Query: 230 LTSLEELSLIKTSNSSLSFNISFDWIP---PFKLRYLVIRYYQLGPKFPTWLRNQTELTT 286
LT+L+ L + S I F + +++ L +R YQ L++ ++
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-----SQSLKSIRDIHH 176
Query: 287 LVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPL 346
L L+ L + L + D L +L R N F+F PL
Sbjct: 177 LTLH-------LSESAFLLEIFADILS-SVRYLELRDTNLARFQF------------SPL 216
Query: 347 PL--WSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDL-DISFN--SLNG----------- 390
P+ SS + KL R ++ + N+L + ++ +L ++ F+ +LNG
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276
Query: 391 ---------------SIPQ--------SVGNLKQLLTLVISNNNLSGGIP-QFLKNISSL 426
IPQ +V +L + + + N+ +P F +++ SL
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 336
Query: 427 YILDMTKNNFSGEI---PESIGSLLTIRFLVLSNNHL-----SGEIPPSLKNCSLMDSLD 478
LD+++N E G+ +++ LVLS NHL +GEI +LKN + SLD
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN---LTSLD 393
Query: 479 LGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 533
+ N + +S +R + G + C L +LD+S+NNL
Sbjct: 394 ISRNTFHP-----MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL 443
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 156 YLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSD 215
YL NL LEL N P + NLT + EL L+ N + K + L +I+ L+L+
Sbjct: 61 YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTS 116
Query: 216 NQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFP 275
Q A L NL L L L + +N S ++ L+YL I Q+ P
Sbjct: 117 TQITDVTPLAGLSNLQVLY-LDLNQITNISPLAGLT-------NLQYLSIGNAQVSDLTP 168
Query: 276 TWLRNQTELTTLVLNGASISDTLP 299
L N ++LTTL + ISD P
Sbjct: 169 --LANLSKLTTLKADDNKISDISP 190
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 134 SSLARLELGYNQLTGNLPISLGYLKNLRYLELW--YNSFLGSIPPSI-GNLTFLEELYLT 190
+ L L L YNQL +S G +L L N+ L S+P + +LT L++LYL
Sbjct: 59 TKLTWLNLDYNQLQ---TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115
Query: 191 SNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSL 238
NQ+ F +L+ ++ L L+ NQ + I LT+L+ LSL
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSL 162
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 453 LVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT 512
L L+NN L+ + + +D L LG NQL ++P+ + + + L LRL +N
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 513 IPSELCKLSALHILDLSHNNLSGPIPH 539
KL+ L L LS N L +PH
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQ-SVPH 172
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 134 SSLARLELGYNQLTGNLPISL-GYLKNLRYLELWYNSFLGSIPP-SIGNLTFLEELYLTS 191
+ L +L LG NQL +LP + L L+ L L N L SIP + LT L+ L L++
Sbjct: 107 TQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLST 164
Query: 192 NQMNGKFPESFGQLSAIRVLELSDNQWE 219
NQ+ +F +L ++ + L NQ++
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 134 SSLARLELGYNQLTGNLPISLGYLKNLRYLELW--YNSFLGSIPPSI-GNLTFLEELYLT 190
+ L L L YNQL +S G +L L N+ L S+P + +LT L++LYL
Sbjct: 59 TKLTWLNLDYNQLQ---TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115
Query: 191 SNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSL 238
NQ+ F +L+ ++ L L+ NQ + I LT+L+ LSL
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSL 162
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 453 LVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT 512
L L+NN L+ + + +D L LG NQL ++P+ + + + L LRL +N
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 513 IPSELCKLSALHILDLSHNNLSGPIPH 539
KL+ L L LS N L +PH
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQ-SVPH 172
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 134 SSLARLELGYNQLTGNLPISL-GYLKNLRYLELWYNSFLGSIPP-SIGNLTFLEELYLTS 191
+ L +L LG NQL +LP + L L+ L L N L SIP + LT L+ L L++
Sbjct: 107 TQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLST 164
Query: 192 NQMNGKFPESFGQLSAIRVLELSDNQWE 219
NQ+ +F +L ++ + L NQ++
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 373 QKTPFLTDLDISFNSLNGSIPQS-VGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDM 431
++ P L LD++F L QS NL L L +S++ L Q + +L L++
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456
Query: 432 TKNNF-SGEIPE--SIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNI 488
N+F G I + S+ +L + LVLS LS + + +M+ +DL N+L+ +
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS- 515
Query: 489 PAWIGESMPSLSILR-----LRSNHFNGTIPSELCKLSALHILDLSHN 531
S+ +LS L+ L SNH + +PS L LS ++L N
Sbjct: 516 ------SIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 129/310 (41%), Gaps = 44/310 (14%)
Query: 49 HWLFNITXXXXXXXXXXXXQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQT 108
H+ FNI+ + F + LQ LDL+ +L L L L+
Sbjct: 264 HYFFNIS----------------SNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKK 305
Query: 109 LKLSLNQFRG----EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLE 164
L LS N+F S+F L+ + RLELG TG L L+NLR L+
Sbjct: 306 LVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLELG----TG----CLENLENLRELD 356
Query: 165 LWYNSFLGSIPPSIG--NLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFI 222
L ++ S ++ NL+ L+ L L+ N+ E+F + + +L+L+ + +
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416
Query: 223 TEAHLRNLTSLEEL----SLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPT-W 277
++ +NL L+ L SL+ S+ L FD +P + L ++ G T
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQL-----FDGLPALQHLNLQGNHFPKGNIQKTNS 471
Query: 278 LRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL 337
L+ L LVL+ +S F L + ++ +D+ N L+ L ++L
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKM-MNHVDLSHNRLTSSSIEALSHLKGIYLNL 530
Query: 338 SSNRFEGPLP 347
+SN LP
Sbjct: 531 ASNHISIILP 540
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 22/158 (13%)
Query: 71 IPDG-FASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSE 129
+P G F+ L ++ +++ GN L L++S + G D + L+E
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNE 197
Query: 130 C---------------INSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSI 174
+ S L RL LG+NQ+ SL +L LR L L N+ L +
Sbjct: 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD-NNKLSRV 256
Query: 175 PPSIGNLTFLEELYLTSNQM-----NGKFPESFGQLSA 207
P + +L L+ +YL +N + N P FG A
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 136/328 (41%), Gaps = 53/328 (16%)
Query: 156 YLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSD 215
YL NL YL L N P + NL L LY+ +N++ +SA++ L
Sbjct: 64 YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--------TDISALQNLT--- 110
Query: 216 NQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIP---PFKLRYLVIRYYQLGP 272
N E ++ E ++ +++ L L+ + N + N+S D P L YL + ++
Sbjct: 111 NLRELYLNEDNISDISPLANLTKXYSLNLGANHNLS-DLSPLSNXTGLNYLTVTESKVKD 169
Query: 273 KFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFP 332
P + N T+L +L LN I D P +L N ++ P R
Sbjct: 170 VTP--IANLTDLYSLSLNYNQIEDISPLASLT---SLHYFTAYVNQITDITPVANXTRL- 223
Query: 333 GSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSI 392
S+ + +N+ PL +NL++L T L+I N + S
Sbjct: 224 NSLKIGNNKITDLSPL--ANLSQL----------------------TWLEIGTNQI--SD 257
Query: 393 PQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRF 452
+V +L +L L + +N +S L N+S L L + N E E IG L +
Sbjct: 258 INAVKDLTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTT 315
Query: 453 LVLSNNHLSGEIPPSLKNCSLMDSLDLG 480
L LS NH++ +I P L + S DS D
Sbjct: 316 LFLSQNHIT-DIRP-LASLSKXDSADFA 341
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 124 IDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTF 183
I LS N S L LE+G NQ++ ++ L L+ L + N S + NL+
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQI--SDISVLNNLSQ 288
Query: 184 LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ 217
L L+L +NQ+ + E G L+ + L LS N
Sbjct: 289 LNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNH 322
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 89/203 (43%), Gaps = 24/203 (11%)
Query: 73 DGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECIN 132
+G ASLN+L+L D ++L S L L+ L L N S + +
Sbjct: 120 NGLASLNTLELFD----NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV----- 170
Query: 133 SSSLARLELGYNQLTGNLPISLGYLK---NLRYLELWYNSFLGSIPPSIGNLTFLEELYL 189
SL RL+LG +L IS G + NL+YL L + P++ L LEEL +
Sbjct: 171 -PSLMRLDLG--ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEM 225
Query: 190 TSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFN 249
+ N P SF LS+++ L + ++Q I L SL EL+L + SSL
Sbjct: 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSL--- 281
Query: 250 ISFDWIPPFKLRYLVIRYYQLGP 272
D P LRYLV + P
Sbjct: 282 -PHDLFTP--LRYLVELHLHHNP 301
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 135 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQM 194
SL L L N++T SL L NL L L +NS S+ N L EL+L +N++
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 195 NGKFPESFGQLSAIRVLELSDN 216
K P I+V+ L +N
Sbjct: 253 -VKVPGGLADHKYIQVVYLHNN 273
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 9/161 (5%)
Query: 367 IPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSL 426
+P DL T L D+ N + NLK L TL++ NN +S P + L
Sbjct: 46 VPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 427 YILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQL-S 485
L ++KN E+PE + T++ L + N ++ + M ++LG N L S
Sbjct: 103 ERLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 486 GNIPAWIGESMPSLSILRLRSNHFNGTIPSEL-CKLSALHI 525
I + M LS +R+ + TIP L L+ LH+
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHL 199
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 137 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNG 196
A L+L N++T LKNL L L N P + L LE LYL+ NQ+
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 197 KFPESFGQ-LSAIRVLE 212
+ PE + L +RV E
Sbjct: 114 ELPEKMPKTLQELRVHE 130
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 135 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQM 194
SL L L N++T SL L NL L L +NS S+ N L EL+L +N++
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 195 NGKFPESFGQLSAIRVLELSDN 216
K P I+V+ L +N
Sbjct: 253 -VKVPGGLADHKYIQVVYLHNN 273
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 9/161 (5%)
Query: 367 IPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSL 426
+P DL T L D+ N + NLK L TL++ NN +S P + L
Sbjct: 46 VPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 427 YILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQL-S 485
L ++KN E+PE + T++ L + N ++ + M ++LG N L S
Sbjct: 103 ERLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 486 GNIPAWIGESMPSLSILRLRSNHFNGTIPSEL-CKLSALHI 525
I + M LS +R+ + TIP L L+ LH+
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHL 199
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 137 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNG 196
A L+L N++T LKNL L L N P + L LE LYL+ NQ+
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 197 KFPESFGQ-LSAIRVLE 212
+ PE + L +RV E
Sbjct: 114 ELPEKMPKTLQELRVHE 130
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 62/155 (40%), Gaps = 31/155 (20%)
Query: 307 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGP 366
L LD ++ + G +P G++DLS N+ + LPL
Sbjct: 60 LNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL------------------ 94
Query: 367 IPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSL 426
LGQ P LT LD+SFN L ++ L +L L + N L P L L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 427 YILDMTKNNFSGEIPES-IGSLLTIRFLVLSNNHL 460
L + NN + E+P + L + L+L N L
Sbjct: 151 EKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 5/146 (3%)
Query: 381 LDISFNSLNGSIPQ-SVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGE 439
LD+S N+L+ + + L L +L++S+N+L+ + + +L LD++ N+
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 440 IPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWI---GESM 496
L + L+L NNH+ + ++ + + L L +NQ+S P + G +
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKL 162
Query: 497 PSLSILRLRSNHFNGTIPSELCKLSA 522
P L +L L SN ++L KL A
Sbjct: 163 PKLMLLDLSSNKLKKLPLTDLQKLPA 188
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 464 IPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSAL 523
+P SL + + + LDL N LS W + +L L L NH N + L
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 524 HILDLSHNNLSGPIPHCVGDFSAMKV 549
LDLS N+L D A++V
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEV 116
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 62/155 (40%), Gaps = 31/155 (20%)
Query: 307 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGP 366
L LD ++ + G +P G++DLS N+ + LPL
Sbjct: 61 LNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL------------------ 95
Query: 367 IPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSL 426
LGQ P LT LD+SFN L ++ L +L L + N L P L L
Sbjct: 96 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 151
Query: 427 YILDMTKNNFSGEIPES-IGSLLTIRFLVLSNNHL 460
L + NN + E+P + L + L+L N L
Sbjct: 152 EKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 371 LGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILD 430
LGQ P LT LD+SFN L ++ L +L L + N L P L L L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 431 MTKNNFSGEIPES-IGSLLTIRFLVLSNNHL 460
+ NN + E+P + L + L+L N L
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 371 LGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILD 430
LGQ P LT LD+SFN L ++ L +L L + N L P L L L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 431 MTKNNFSGEIPES-IGSLLTIRFLVLSNNHL 460
+ NN + E+P + L + L+L N L
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 371 LGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILD 430
LGQ P LT LD+SFN L ++ L +L L + N L P L L L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 431 MTKNNFSGEIPES-IGSLLTIRFLVLSNNHL 460
+ NN + E+P + L + L+L N L
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 148 GNLPISLGYLKNLRYLELWYNSFLGSIPPSI-GNLTFLEELYLTSNQMNGKFPESFGQLS 206
G + G YL+L NS L S+P + LT L +LYL N++ F +L+
Sbjct: 18 GRTSVPTGIPAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76
Query: 207 AIRVLELSDNQWEGFITEAHLRNLTSLEELSL 238
++ L LS NQ + + LT L+EL+L
Sbjct: 77 SLTYLNLSTNQLQS-LPNGVFDKLTQLKELAL 107
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 134 SSLARLELGYNQLTGNLPISL-GYLKNLRYLELWYNSFLGSIPPSI-GNLTFLEELYLTS 191
+SL +L LG N+L +LP + L +L YL L N L S+P + LT L+EL L +
Sbjct: 52 TSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNT 109
Query: 192 NQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLE 234
NQ+ F +L+ ++ L L NQ + + + LTSL+
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQ 151
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 134 SSLARLELGYNQLTGNLPISL-GYLKNLRYLELWYNSFLGSIPPSI-GNLTFLEELYLTS 191
+SL L L NQL +LP + L L+ L L N L S+P + LT L++L L
Sbjct: 76 TSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQ 133
Query: 192 NQMNGKFPESFGQLSAIRVLELSDNQWE 219
NQ+ F +L++++ + L DN W+
Sbjct: 134 NQLKSVPDGVFDRLTSLQYIWLHDNPWD 161
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 8/150 (5%)
Query: 367 IPNDLGQKTPFLTDLDISFNSLNGSIPQSV-GNLKQLLTLVISNNNLSGGIPQFLKNISS 425
+P + +T +L D+ NSL S+P V L L L + N L ++S
Sbjct: 22 VPTGIPAQTTYL---DLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 426 LYILDMTKNNFSGEIPESIGSLLT-IRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQL 484
L L+++ N +P + LT ++ L L+ N L + + L L +NQL
Sbjct: 78 LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 485 SGNIPAWIGESMPSLSILRLRSNHFNGTIP 514
++P + + + SL + L N ++ T P
Sbjct: 137 K-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 136 LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTF-----LEELYLT 190
L +LEL NQLTG P + +++ L+L N I N F L+ L L
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-----KEISNKMFLGLHQLKTLNLY 110
Query: 191 SNQMNGKFPESFGQLSAIRVLELSDN 216
NQ++ P SF L+++ L L+ N
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 154 LGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLEL 213
G L +L LEL N G P + + ++EL L N++ + F L ++ L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 214 SDNQWEGFITEA--HLRNLTSL 233
DNQ + + HL +LTSL
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSL 131
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 5/186 (2%)
Query: 351 SNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFN--SLNGSIPQSVGNLKQLLTLVIS 408
S+ T+L L N +P+ + K LT L +S N S G QS L L +S
Sbjct: 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 409 NNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIG-SLLTIRFLVLSNNHLSGEIPPS 467
N + FL + L LD +N S+ SL + +L +S+ H
Sbjct: 87 FNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 468 LKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILD 527
S ++ L + N N I + +L+ L L P+ LS+L +L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 528 LSHNNL 533
+SHNN
Sbjct: 206 MSHNNF 211
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 31/155 (20%)
Query: 307 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGP 366
L LD ++ + G +P G++DLS N+ + LPL
Sbjct: 60 LNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL------------------ 94
Query: 367 IPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSL 426
LGQ P LT LD+SFN L ++ L +L L + N L P L L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 427 YILDMTKNNFSGEIPES-IGSLLTIRFLVLSNNHL 460
L + N+ + E+P + L + L+L N L
Sbjct: 151 EKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 30/138 (21%)
Query: 307 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGP 366
L LD ++ + G +P G++DLS N+ + LPL
Sbjct: 60 LNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL------------------ 94
Query: 367 IPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSL 426
LGQ P LT LD+SFN L ++ L +L L + N L P L L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 427 YILDMTKNNFSGEIPESI 444
L + N + E+P +
Sbjct: 151 EKLSLANNQLT-ELPAGL 167
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 138 RLELGYNQLTGNLPISLGYLKNLRYLELWYNSF-LGSIPPSI-GNLTFLEELYLTSNQMN 195
RL L NQ+T P +L NL+ +L++NS L +IP + LT L +L L N +
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQ--QLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 196 GKFPESFGQLSAIRVLELSDNQWE 219
+F L ++ + L +N W+
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNNPWD 118
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 352 NLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQ-SVGNLKQLLTLVISNN 410
NL +LY N + IP + K LT LD++ N L SIP+ + NLK L + + NN
Sbjct: 58 NLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 30/138 (21%)
Query: 307 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGP 366
L LD ++ + G +P G++DLS N+ + LPL
Sbjct: 60 LNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL------------------ 94
Query: 367 IPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSL 426
LGQ P LT LD+SFN L ++ L +L L + N L P L L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 427 YILDMTKNNFSGEIPESI 444
L + N + E+P +
Sbjct: 151 EKLSLANNQLT-ELPAGL 167
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 133/345 (38%), Gaps = 64/345 (18%)
Query: 106 LQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLEL 165
+Q L L+ NQ GL ++L +L+L YN L S YL +LRYL L
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKW----TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSL 279
Query: 166 WYNSFLGSIPPS---IGNLTFL--------EELYLTSNQMNGKFPESFGQLSAIRVLELS 214
YN+ P S + NL +L + + L S+ F SF L + L +
Sbjct: 280 EYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDF--SFQWLKYLEYLNMD 337
Query: 215 DNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKF 274
DN + L SL+ LSL KT S L+ L +
Sbjct: 338 DNNIPSTKSNT-FTGLVSLKYLSLSKTFTS---------------LQTLTNETFVSLAHS 381
Query: 275 PTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNT--LVFRFP 332
P N T+ + I++ SW QL + LD+G N + ++ R
Sbjct: 382 PLLTLNLTKNHI-----SKIANGTFSWLGQLRI----LDLGLNEIEQKLSGQEWRGLRNI 432
Query: 333 GSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSI 392
+ LS N++ L L +S+ + P L + L ++DIS
Sbjct: 433 FEIYLSYNKY---LQLSTSSFALV---------PSLQRLMLRRVALKNVDIS-------- 472
Query: 393 PQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFS 437
P L+ L L +SNNN++ L+ + +L ILD NN +
Sbjct: 473 PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 61/155 (39%), Gaps = 31/155 (20%)
Query: 307 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGP 366
L LD ++ + G +P G++DLS N+ + LPL
Sbjct: 60 LNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL------------------ 94
Query: 367 IPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSL 426
LGQ P LT LD+SFN L ++ L +L L + N L P L L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 427 YILDMTKNNFSGEIPES-IGSLLTIRFLVLSNNHL 460
L + N + E+P + L + L+L N L
Sbjct: 151 EKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 61/155 (39%), Gaps = 31/155 (20%)
Query: 307 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGP 366
L LD ++ + G +P G++DLS N+ + LPL
Sbjct: 60 LNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL------------------ 94
Query: 367 IPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSL 426
LGQ P LT LD+SFN L ++ L +L L + N L P L L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 427 YILDMTKNNFSGEIPES-IGSLLTIRFLVLSNNHL 460
L + N + E+P + L + L+L N L
Sbjct: 151 EKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 10/145 (6%)
Query: 74 GFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINS 133
G L++L L D G L L R L L Q L L N + D L
Sbjct: 102 GLGRLHTLHL-DRCGLQELGPGLFRGLAAL---QYLYLQDNALQALPDDTFRDLG----- 152
Query: 134 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQ 193
+L L L N+++ + L +L L L N P + +L L LYL +N
Sbjct: 153 -NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 211
Query: 194 MNGKFPESFGQLSAIRVLELSDNQW 218
++ E+ L A++ L L+DN W
Sbjct: 212 LSALPTEALAPLRALQYLRLNDNPW 236
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 3/181 (1%)
Query: 355 KLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNN-NLS 413
+++L N S +P Q LT L + N+L G + L L L +S+N L
Sbjct: 35 RIFLHGNRISY-VPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 414 GGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSL 473
P + + L+ L + + P L +++L L +N+L + ++
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 474 MDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 533
+ L L N++ ++P + SL L L NH P L L L L NNL
Sbjct: 154 LTHLFLHGNRIP-SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
Query: 534 S 534
S
Sbjct: 213 S 213
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 10/145 (6%)
Query: 74 GFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINS 133
G L++L L D G L L R L L Q L L N + D L
Sbjct: 103 GLGRLHTLHL-DRCGLQELGPGLFRGLAAL---QYLYLQDNALQALPDDTFRDLG----- 153
Query: 134 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQ 193
+L L L N+++ + L +L L L N P + +L L LYL +N
Sbjct: 154 -NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Query: 194 MNGKFPESFGQLSAIRVLELSDNQW 218
++ E+ L A++ L L+DN W
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPW 237
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 8/148 (5%)
Query: 80 SLQLLDLSGNSFLEGQLSRNLGTLC--NLQTLKLSLNQFRGEV---SDFIDGLS---ECI 131
S+ LDLSGN F E R + +Q+L LS + G ++F D + + +
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272
Query: 132 NSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTS 191
+S + +L +++ L + +L L L N + LT L+EL L +
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDT 332
Query: 192 NQMNGKFPESFGQLSAIRVLELSDNQWE 219
NQ+ F +L++++ + L N W+
Sbjct: 333 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 360
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 70/172 (40%), Gaps = 10/172 (5%)
Query: 155 GYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS 214
G N R L L N S +L LE L L+ N + +F L+ + LEL
Sbjct: 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120
Query: 215 DNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYL--VIRYYQLGP 272
DN+ A + L+ L+EL L S+ + +F+ IP + L + R +
Sbjct: 121 DNRLTTIPNGAFVY-LSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISE 178
Query: 273 KFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIP 324
L N L + N I + P + LDELD+ GNHLS P
Sbjct: 179 GAFEGLSNLRYLNLAMCNLREIPNLTPL------IKLDELDLSGNHLSAIRP 224
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 74 GFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINS 133
F S LQ+LDLS ++ +L +L TL L+ N + GLS
Sbjct: 49 SFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL--- 104
Query: 134 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYN---SFLGSIPPSIGNLTFLEELYLT 190
L LE L N PI G+LK L+ L + +N SF +P NLT LE L L+
Sbjct: 105 QKLVALETNLASLE-NFPI--GHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLS 159
Query: 191 SNQMNGKF 198
SN++ +
Sbjct: 160 SNKIQSIY 167
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 85/193 (44%), Gaps = 19/193 (9%)
Query: 349 WSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSV-GNLKQLLTLVI 407
++ + KLY+ N +P + Q P LT L + N L S+P+ + N +L TL +
Sbjct: 91 YAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSM 148
Query: 408 SNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSG-EIPP 466
SNNNL + +SL L ++ N + I SL +S N LS IP
Sbjct: 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN---VSYNLLSTLAIPI 205
Query: 467 SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHIL 526
+ ++ LD N +I G L+IL+L+ N+ T + L L +
Sbjct: 206 A------VEELDASHN----SINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEV 253
Query: 527 DLSHNNLSGPIPH 539
DLS+N L + H
Sbjct: 254 DLSYNELEKIMYH 266
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 74 GFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINS 133
F S LQ+LDLS ++ +L +L TL L+ N + GLS
Sbjct: 48 SFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS----- 101
Query: 134 SSLARLELGYNQLTG--NLPISLGYLKNLRYLELWYN---SFLGSIPPSIGNLTFLEELY 188
SL +L L N PI G+LK L+ L + +N SF +P NLT LE L
Sbjct: 102 -SLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLD 156
Query: 189 LTSNQMNGKF 198
L+SN++ +
Sbjct: 157 LSSNKIQSIY 166
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 85/193 (44%), Gaps = 19/193 (9%)
Query: 349 WSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSV-GNLKQLLTLVI 407
++ + KLY+ N +P + Q P LT L + N L S+P+ + N +L TL +
Sbjct: 97 YAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSM 154
Query: 408 SNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSG-EIPP 466
SNNNL + +SL L ++ N + I SL +S N LS IP
Sbjct: 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN---VSYNLLSTLAIPI 211
Query: 467 SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHIL 526
+ ++ LD N +I G L+IL+L+ N+ T + L L +
Sbjct: 212 A------VEELDASHN----SINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEV 259
Query: 527 DLSHNNLSGPIPH 539
DLS+N L + H
Sbjct: 260 DLSYNELEKIMYH 272
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 74 GFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINS 133
F S LQ+LDLS ++ +L +L TL L+ N + GLS
Sbjct: 49 SFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS----- 102
Query: 134 SSLARLELGYNQLTG--NLPISLGYLKNLRYLELWYN---SFLGSIPPSIGNLTFLEELY 188
SL +L L N PI G+LK L+ L + +N SF +P NLT LE L
Sbjct: 103 -SLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLD 157
Query: 189 LTSNQMNGKF 198
L+SN++ +
Sbjct: 158 LSSNKIQSIY 167
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 74 GFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINS 133
F S LQ+LDLS ++ +L +L TL L+ N + GLS
Sbjct: 48 SFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS----- 101
Query: 134 SSLARLELGYNQLTG--NLPISLGYLKNLRYLELWYN---SFLGSIPPSIGNLTFLEELY 188
SL +L L N PI G+LK L+ L + +N SF +P NLT LE L
Sbjct: 102 -SLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLD 156
Query: 189 LTSNQMNGKF 198
L+SN++ +
Sbjct: 157 LSSNKIQSIY 166
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 74 GFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINS 133
F S LQ+LDLS ++ +L +L TL L+ N + GLS
Sbjct: 47 SFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS----- 100
Query: 134 SSLARLELGYNQLTG--NLPISLGYLKNLRYLELWYN---SFLGSIPPSIGNLTFLEELY 188
SL +L L N PI G+LK L+ L + +N SF +P NLT LE L
Sbjct: 101 -SLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLD 155
Query: 189 LTSNQMNGKF 198
L+SN++ +
Sbjct: 156 LSSNKIQSIY 165
>pdb|2H26|A Chain A, Human Cd1b In Complex With Endogenous Phosphatidylcholine
And Spacer
Length = 286
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 272 PKFPTWLRNQTELTTLVLNGASISDTLPS--WFWQLNLTLDELDVGGNHLSGRIPNT 326
P + W+R + E G + D LP+ W W L TLD D LS R+ ++
Sbjct: 215 PVWVMWMRGEQEQ-----QGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHS 266
>pdb|1GZP|A Chain A, Cd1b In Complex With Gm2 Ganglioside
pdb|1GZQ|A Chain A, Cd1b In Complex With Phophatidylinositol
pdb|1UQS|A Chain A, The Crystal Structure Of Human Cd1b With A Bound Bacterial
Glycolipid
Length = 300
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query: 272 PKFPTWLRNQTELTTLVLNGASISDTLPS--WFWQLNLTLDELDVGGNHLSGRIPNT--- 326
P + W+R + E G + D LP+ W W L TLD D LS R+ ++
Sbjct: 218 PVWVMWMRGEQEQ-----QGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSSLE 272
Query: 327 ----LVFRFPGSVDLSSNRFEGPLPLW 349
+++ PGS ++ FE W
Sbjct: 273 GQDIILYWGPGSGGGLNDIFEAQKIEW 299
>pdb|3T8X|A Chain A, Crystal Structure Of Human Cd1b In Complex With Synthetic
Antigenic Diacylsulfoglycolipid Sgl12 And Endogenous
Spacer
pdb|3T8X|C Chain C, Crystal Structure Of Human Cd1b In Complex With Synthetic
Antigenic Diacylsulfoglycolipid Sgl12 And Endogenous
Spacer
Length = 301
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 272 PKFPTWLRNQTELTTLVLNGASISDTLPS--WFWQLNLTLDELDVGGNHLSGRIPNT 326
P + W+R + E G + D LP+ W W L TLD D LS R+ ++
Sbjct: 215 PVWVMWMRGEQEQ-----QGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHS 266
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 15/147 (10%)
Query: 398 NLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNN-FSGE---------IPESIGSL 447
NLK L + + N +P FLK + ++++ N SGE +G
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVGEK 306
Query: 448 LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 507
+ I ++ NN + + SL+ + L+ NQL G +PA+ E L+ L L N
Sbjct: 307 IQIIYIGY-NNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEI--KLASLNLAYN 363
Query: 508 HFNGTIPSELCKLSA-LHILDLSHNNL 533
IP+ C + + L +HN L
Sbjct: 364 QIT-EIPANFCGFTEQVENLSFAHNKL 389
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 74 GFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINS 133
A L S++ LDL+ + L L NLQ L L LNQ I +S
Sbjct: 108 AIAGLQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQ--------ITNISPLAGL 156
Query: 134 SSLARLELGYNQLTGNLPIS-LGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSN 192
++L L +G NQ+ P++ L L LR ++ + I P + +L L E++L N
Sbjct: 157 TNLQYLSIGNNQVNDLTPLANLSKLTTLR----ADDNKISDISP-LASLPNLIEVHLKDN 211
Query: 193 QMNGKFP 199
Q++ P
Sbjct: 212 QISDVSP 218
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 13/144 (9%)
Query: 119 EVSDFIDGLSECINSSS---LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIP 175
E C N +S R EL ++ ++P+ N RYL L NS
Sbjct: 1 ETGTSCPAACSCSNQASRVICTRRELA--EVPASIPV------NTRYLNLQENSIQVIRT 52
Query: 176 PSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEE 235
+ +L LE L L+ N + +F L ++ LEL DN+ T+A L+ L E
Sbjct: 53 DTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQA-FEYLSKLRE 111
Query: 236 LSLIKTSNSSLSFNISFDWIPPFK 259
L L S+ + +F+ +P +
Sbjct: 112 LWLRNNPIESIP-SYAFNRVPSLR 134
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 145 QLTGNL--PISLGY---LKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFP 199
QL+ NL I +G L +L LEL+ N + L+ L EL+L +N +
Sbjct: 65 QLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPS 124
Query: 200 ESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSL 238
+F ++ ++R L+L + + +I+EA L +L L+L
Sbjct: 125 YAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL 163
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 171 LGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNL 230
L S+P I T + LYL NQ+ P F +L+ + L+L +NQ + L
Sbjct: 21 LASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 77
Query: 231 TSLEELSL 238
T L +LSL
Sbjct: 78 TQLTQLSL 85
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 171 LGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNL 230
L S+P I T + LYL NQ+ P F +L+ + L+L +NQ + L
Sbjct: 29 LASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 85
Query: 231 TSLEELSL 238
T L +LSL
Sbjct: 86 TQLTQLSL 93
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 466 PSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSAL-- 523
P+L + L D+ LGE G + A P++ L LR+ P+ +C A
Sbjct: 169 PALTSLDLSDNPGLGER---GLMAALCPHKFPAIQNLALRNTGME--TPTGVCAALAAAG 223
Query: 524 ---HILDLSHNNLSGPI----PHCV 541
H LDLSHN+L + P C+
Sbjct: 224 VQPHSLDLSHNSLRATVNPSAPRCM 248
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 130 CINSSS---LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEE 186
C N +S R EL ++ ++P+ N RYL L NS + +L LE
Sbjct: 12 CSNQASRVICTRRELA--EVPASIPV------NTRYLNLQENSIQVIRTDTFKHLRHLEI 63
Query: 187 LYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSL 246
L L+ N + +F L ++ LEL DN+ T+A L+ L EL L S+
Sbjct: 64 LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQA-FEYLSKLRELWLRNNPIESI 122
Query: 247 SFNISFDWIPPFK 259
+ +F+ +P +
Sbjct: 123 P-SYAFNRVPSLR 134
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 145 QLTGNL--PISLGY---LKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFP 199
QL+ NL I +G L +L LEL+ N + L+ L EL+L +N +
Sbjct: 65 QLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPS 124
Query: 200 ESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSL 238
+F ++ ++R L+L + + +I+EA L +L L+L
Sbjct: 125 YAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL 163
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 305 LNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFS 364
L++ + GN+LS P+ RF + + + E + + + +++LRD F
Sbjct: 211 LDVVYNHFGPSGNYLSSYAPSYFTDRFSSAWGMGLDYAEPHMRRYVTGNARMWLRDYHFD 270
Query: 365 G------PIPNDLGQKTPFLTDLDISFNSLNGS---IPQSVGNLKQLLTLVISNNNLSG 414
G P D +T LT+L + L G+ + + NL L+T+ N+L G
Sbjct: 271 GLRLDATPYMTD-DSETHILTELAQEIHELGGTHLLLAEDHRNLPDLVTV----NHLDG 324
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 468 LKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILD 527
L + +D+L L +NQ+S +P + L L L NH + LC L L +L+
Sbjct: 147 LSRLTKLDTLSLEDNQISDIVPL---ACLTKLQNLYLSKNHISDL--RALCGLKNLDVLE 201
Query: 528 L-SHNNLSGPIPH 539
L S L+ PI H
Sbjct: 202 LFSQEALNKPINH 214
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 76/203 (37%), Gaps = 20/203 (9%)
Query: 31 TSLQVLDLSNNGFNSTIPHWLFNITXXXXXXXXXXXXQGDIPDGFASLN-------SLQL 83
TS+ LDLS NGF ++ F+ ++ F N + +
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 84 LDLSGNSFLEGQLSRNLGTL-------CNLQTLKLSLNQFRGEVSDFIDGLSECINSSSL 136
L+ SG + S+ L +L+ L L+ N+ + GL+ L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH------L 325
Query: 137 ARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNG 196
+L L N L L L L+L YN S L L+EL L +NQ+
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385
Query: 197 KFPESFGQLSAIRVLELSDNQWE 219
F +L++++ + L N W+
Sbjct: 386 VPDGIFDRLTSLQKIWLHTNPWD 408
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,122,857
Number of Sequences: 62578
Number of extensions: 841320
Number of successful extensions: 2301
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1526
Number of HSP's gapped (non-prelim): 397
length of query: 750
length of database: 14,973,337
effective HSP length: 106
effective length of query: 644
effective length of database: 8,340,069
effective search space: 5371004436
effective search space used: 5371004436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)