Query 037651
Match_columns 750
No_of_seqs 660 out of 4221
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 03:05:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-65 4.8E-70 613.9 44.3 541 30-673 68-609 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.2E-59 7E-64 560.5 41.5 540 5-649 68-609 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 9E-41 1.9E-45 324.2 -12.1 477 30-648 44-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 4.6E-38 9.9E-43 318.7 6.9 258 350-649 196-453 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 3.6E-40 7.8E-45 320.0 -16.9 490 7-534 46-541 (565)
6 KOG4194 Membrane glycoprotein 100.0 1.2E-36 2.6E-41 308.4 6.9 389 32-479 53-446 (873)
7 KOG0618 Serine/threonine phosp 100.0 2E-37 4.3E-42 330.8 -4.6 502 11-645 3-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 9.5E-36 2.1E-40 318.0 -5.9 480 36-646 3-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.2E-33 2.6E-38 288.4 -4.7 277 351-653 126-409 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.8E-33 4E-38 287.0 -4.3 386 30-529 6-394 (1255)
11 PLN03210 Resistant to P. syrin 99.9 8.9E-23 1.9E-27 245.3 28.2 241 258-532 657-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 3.6E-22 7.8E-27 240.1 27.3 345 25-410 552-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 3.8E-25 8.3E-30 215.6 -3.9 233 363-645 261-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 3.2E-22 6.9E-27 222.6 17.9 240 332-653 224-463 (788)
15 KOG4237 Extracellular matrix p 99.9 2.3E-24 5.1E-29 210.2 -2.1 149 10-169 50-199 (498)
16 PRK15387 E3 ubiquitin-protein 99.9 1.3E-21 2.9E-26 217.7 17.0 265 284-633 203-467 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 4E-20 8.7E-25 207.5 13.7 202 308-534 179-380 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 5E-20 1.1E-24 206.8 12.4 227 283-539 179-405 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 3.4E-19 7.4E-24 186.7 0.6 182 351-534 23-234 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 4.2E-19 9.2E-24 186.0 0.2 160 375-534 80-263 (319)
21 KOG0617 Ras suppressor protein 99.7 1E-18 2.2E-23 151.4 -4.6 167 26-205 28-195 (264)
22 KOG0617 Ras suppressor protein 99.7 7.6E-19 1.6E-23 152.2 -5.8 165 4-181 31-195 (264)
23 PLN03150 hypothetical protein; 99.4 2.8E-13 6E-18 152.4 11.3 113 498-652 419-532 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 3.3E-14 7.1E-19 146.1 -4.7 195 399-646 74-271 (722)
25 KOG0532 Leucine-rich repeat (L 99.3 3.8E-14 8.2E-19 145.7 -5.8 195 375-622 74-271 (722)
26 COG4886 Leucine-rich repeat (L 99.3 3.4E-12 7.3E-17 137.6 7.3 180 423-653 115-295 (394)
27 PLN03150 hypothetical protein; 99.3 7.1E-12 1.5E-16 141.1 7.4 110 522-673 419-530 (623)
28 COG4886 Leucine-rich repeat (L 99.2 1.1E-11 2.4E-16 133.6 7.2 182 399-631 115-297 (394)
29 KOG3207 Beta-tubulin folding c 99.1 1.3E-11 2.8E-16 123.5 0.4 207 28-240 118-335 (505)
30 KOG3207 Beta-tubulin folding c 99.1 2E-11 4.4E-16 122.1 0.3 210 3-220 118-340 (505)
31 KOG1259 Nischarin, modulator o 99.0 7.1E-11 1.5E-15 112.3 1.9 134 468-650 280-414 (490)
32 PF14580 LRR_9: Leucine-rich r 99.0 2.2E-10 4.7E-15 105.3 5.0 128 27-167 15-149 (175)
33 PF14580 LRR_9: Leucine-rich r 99.0 4E-10 8.7E-15 103.5 6.4 109 421-534 16-126 (175)
34 KOG1259 Nischarin, modulator o 99.0 1E-10 2.3E-15 111.2 1.4 101 135-240 308-408 (490)
35 KOG1909 Ran GTPase-activating 99.0 5.9E-11 1.3E-15 115.8 -1.2 138 471-647 156-310 (382)
36 KOG1909 Ran GTPase-activating 98.9 4.9E-11 1.1E-15 116.3 -5.3 183 352-534 93-311 (382)
37 KOG0531 Protein phosphatase 1, 98.8 3.7E-10 8E-15 121.8 -1.1 197 5-220 71-269 (414)
38 PF13855 LRR_8: Leucine rich r 98.8 2E-09 4.4E-14 81.1 3.2 61 587-647 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.8 4.3E-10 9.3E-15 121.3 -1.7 150 376-534 72-221 (414)
40 KOG4658 Apoptotic ATPase [Sign 98.8 7.9E-09 1.7E-13 119.0 7.9 127 31-167 523-651 (889)
41 KOG4658 Apoptotic ATPase [Sign 98.7 9.6E-09 2.1E-13 118.3 4.8 277 6-320 523-807 (889)
42 PF13855 LRR_8: Leucine rich r 98.7 1.6E-08 3.5E-13 76.2 3.9 59 135-193 2-60 (61)
43 KOG1859 Leucine-rich repeat pr 98.4 3.1E-09 6.6E-14 113.0 -8.3 156 368-535 102-268 (1096)
44 KOG1859 Leucine-rich repeat pr 98.4 2.3E-09 5E-14 113.9 -9.7 179 25-219 103-292 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.4 1E-08 2.2E-13 97.9 -5.2 155 135-293 211-374 (419)
46 KOG4579 Leucine-rich repeat (L 98.3 3.9E-08 8.5E-13 83.1 -2.6 74 579-654 92-165 (177)
47 KOG4579 Leucine-rich repeat (L 98.2 1E-07 2.2E-12 80.6 -2.4 61 472-534 53-113 (177)
48 KOG2120 SCF ubiquitin ligase, 98.2 3E-08 6.5E-13 94.8 -6.7 179 351-532 185-374 (419)
49 KOG2982 Uncharacterized conser 98.2 1.9E-07 4.2E-12 89.4 -1.4 82 159-240 72-155 (418)
50 KOG2982 Uncharacterized conser 98.1 5.9E-07 1.3E-11 86.1 -1.0 203 32-242 46-260 (418)
51 PRK15386 type III secretion pr 98.0 2E-05 4.4E-10 81.6 8.4 57 420-482 48-104 (426)
52 PF12799 LRR_4: Leucine Rich r 97.9 8.7E-06 1.9E-10 55.9 3.1 38 587-625 1-38 (44)
53 PRK15386 type III secretion pr 97.8 6.3E-05 1.4E-09 78.0 9.1 131 351-507 52-187 (426)
54 COG5238 RNA1 Ran GTPase-activa 97.8 8.3E-06 1.8E-10 77.4 2.1 209 30-240 29-281 (388)
55 COG5238 RNA1 Ran GTPase-activa 97.7 1.2E-05 2.6E-10 76.4 1.1 38 133-170 91-132 (388)
56 KOG1644 U2-associated snRNP A' 97.7 7.1E-05 1.5E-09 68.3 5.9 105 56-168 43-150 (233)
57 PF12799 LRR_4: Leucine Rich r 97.7 3.7E-05 8.1E-10 52.8 3.1 35 450-485 3-37 (44)
58 PF13306 LRR_5: Leucine rich r 97.7 0.00011 2.4E-09 65.1 7.0 126 367-499 3-128 (129)
59 KOG3665 ZYG-1-like serine/thre 97.6 1.9E-05 4.2E-10 89.1 1.8 18 156-173 248-265 (699)
60 KOG1644 U2-associated snRNP A' 97.6 8.4E-05 1.8E-09 67.8 5.3 82 135-218 43-125 (233)
61 KOG3665 ZYG-1-like serine/thre 97.6 2E-05 4.3E-10 89.0 1.3 153 79-238 122-282 (699)
62 KOG4341 F-box protein containi 97.5 4.5E-06 9.7E-11 84.1 -5.4 114 371-484 315-438 (483)
63 PF13306 LRR_5: Leucine rich r 97.3 0.00057 1.2E-08 60.5 7.2 122 26-160 7-128 (129)
64 KOG4341 F-box protein containi 97.3 1.3E-05 2.8E-10 81.0 -4.4 280 32-318 139-437 (483)
65 KOG2739 Leucine-rich acidic nu 96.9 0.00067 1.5E-08 64.9 3.0 83 401-485 44-129 (260)
66 KOG2739 Leucine-rich acidic nu 96.8 0.00038 8.3E-09 66.6 0.6 83 135-219 44-129 (260)
67 KOG2123 Uncharacterized conser 96.4 0.00023 4.9E-09 68.2 -4.0 102 133-238 18-124 (388)
68 KOG1947 Leucine rich repeat pr 96.1 0.00066 1.4E-08 75.5 -2.6 63 53-115 241-306 (482)
69 KOG1947 Leucine rich repeat pr 96.0 0.0013 2.9E-08 73.1 -0.8 112 54-170 187-307 (482)
70 PF00560 LRR_1: Leucine Rich R 95.7 0.0049 1.1E-07 35.0 0.9 19 589-608 2-20 (22)
71 PF00560 LRR_1: Leucine Rich R 95.6 0.005 1.1E-07 35.0 0.9 21 612-633 1-21 (22)
72 KOG2123 Uncharacterized conser 95.3 0.00089 1.9E-08 64.2 -4.9 100 55-164 19-123 (388)
73 KOG4308 LRR-containing protein 93.9 0.00036 7.8E-09 75.5 -12.7 83 402-484 89-184 (478)
74 KOG0473 Leucine-rich repeat pr 91.8 0.0028 6.1E-08 59.3 -8.0 96 17-117 29-124 (326)
75 KOG4308 LRR-containing protein 91.7 0.0011 2.4E-08 71.7 -12.6 183 353-535 89-304 (478)
76 PF13504 LRR_7: Leucine rich r 91.6 0.12 2.6E-06 27.2 1.3 13 588-600 2-14 (17)
77 PF13504 LRR_7: Leucine rich r 90.3 0.16 3.5E-06 26.7 1.1 14 7-20 2-15 (17)
78 KOG0473 Leucine-rich repeat pr 89.6 0.0065 1.4E-07 57.0 -7.7 84 3-90 39-122 (326)
79 smart00369 LRR_TYP Leucine-ric 89.0 0.41 8.8E-06 28.3 2.3 21 472-493 2-22 (26)
80 smart00370 LRR Leucine-rich re 89.0 0.41 8.8E-06 28.3 2.3 21 472-493 2-22 (26)
81 smart00369 LRR_TYP Leucine-ric 87.7 0.44 9.6E-06 28.2 1.9 13 588-600 3-15 (26)
82 smart00370 LRR Leucine-rich re 87.7 0.44 9.6E-06 28.2 1.9 13 588-600 3-15 (26)
83 KOG3864 Uncharacterized conser 87.1 0.07 1.5E-06 49.4 -2.7 82 32-113 102-185 (221)
84 PF13516 LRR_6: Leucine Rich r 82.1 0.51 1.1E-05 27.3 0.4 13 105-117 3-15 (24)
85 KOG3864 Uncharacterized conser 77.3 0.48 1E-05 44.0 -1.2 82 80-167 102-185 (221)
86 smart00365 LRR_SD22 Leucine-ri 71.5 3.2 6.9E-05 24.6 1.7 14 611-624 2-15 (26)
87 smart00364 LRR_BAC Leucine-ric 66.4 3.9 8.5E-05 24.2 1.3 13 588-600 3-15 (26)
88 KOG4242 Predicted myosin-I-bin 64.9 14 0.0003 39.3 5.8 15 423-437 439-453 (553)
89 smart00368 LRR_RI Leucine rich 60.8 6.3 0.00014 23.8 1.6 14 611-624 2-15 (28)
90 KOG4242 Predicted myosin-I-bin 58.4 31 0.00068 36.8 7.0 57 589-645 415-478 (553)
91 PF04478 Mid2: Mid2 like cell 45.3 2.3 5E-05 37.5 -2.9 9 686-694 50-58 (154)
92 PF15102 TMEM154: TMEM154 prot 38.5 18 0.00039 31.9 1.4 28 686-713 59-87 (146)
93 smart00367 LRR_CC Leucine-rich 34.5 20 0.00043 21.0 0.8 10 80-89 3-12 (26)
94 PF08374 Protocadherin: Protoc 33.9 34 0.00074 32.2 2.5 27 681-707 34-60 (221)
95 TIGR00864 PCC polycystin catio 33.8 23 0.00049 46.5 1.8 33 593-625 1-33 (2740)
96 PF01102 Glycophorin_A: Glycop 31.9 29 0.00062 29.8 1.6 18 687-704 66-83 (122)
97 PHA02657 hypothetical protein; 31.4 2.5E+02 0.0054 22.1 6.3 34 704-738 43-76 (95)
98 KOG3763 mRNA export factor TAP 26.8 27 0.00059 38.0 0.8 64 28-91 215-282 (585)
99 PF07204 Orthoreo_P10: Orthore 26.6 55 0.0012 26.2 2.2 29 684-712 41-69 (98)
100 KOG3763 mRNA export factor TAP 25.2 38 0.00082 37.0 1.5 64 102-171 216-283 (585)
101 PF08693 SKG6: Transmembrane a 24.3 1E+02 0.0022 20.6 2.8 6 687-692 14-19 (40)
102 PF11980 DUF3481: Domain of un 24.2 40 0.00087 26.3 1.0 32 683-714 14-46 (87)
103 TIGR00864 PCC polycystin catio 23.5 48 0.001 43.8 2.1 19 582-600 14-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-65 Score=613.85 Aligned_cols=541 Identities=35% Similarity=0.544 Sum_probs=482.1
Q ss_pred CCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccC-CCCCCCEEECcCCCCcccccccccCCCCCCCE
Q 037651 30 FTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFA-SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQT 108 (750)
Q Consensus 30 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 108 (750)
..+++.|+|++|.+++.++..|..+++|++|+|++|++.+.+|..+. ++++|++|++++|. +.+.+|. +.+++|++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~-l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN-FTGSIPR--GSIPNLET 144 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc-cccccCc--cccCCCCE
Confidence 45799999999999999999999999999999999999988887654 99999999999999 6666664 56899999
Q ss_pred EeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeee
Q 037651 109 LKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELY 188 (750)
Q Consensus 109 L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 188 (750)
|++++|.+.+..|..++.++ +|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFS------SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred EECcCCcccccCChHHhcCC------CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 99999999999999898887 999999999999989999999999999999999999999999999999999999
Q ss_pred cccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEeccc
Q 037651 189 LTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYY 268 (750)
Q Consensus 189 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 268 (750)
+++|.+++.+|..++++++|++|++++|.+.+.+|. .++++++|++|++++|.
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-------------------------- 271 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNK-------------------------- 271 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCe--------------------------
Confidence 999999999999999999999999999999887776 78888888888877642
Q ss_pred cCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCC
Q 037651 269 QLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPL 348 (750)
Q Consensus 269 ~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~ 348 (750)
+.+..|.++..+++|++|++++|.+.+.+|..+... ++|+.|++++|.+++.+|..+..
T Consensus 272 -l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~------------------- 330 (968)
T PLN00113 272 -LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIPVALTS------------------- 330 (968)
T ss_pred -eeccCchhHhhccCcCEEECcCCeeccCCChhHcCC-CCCcEEECCCCccCCcCChhHhc-------------------
Confidence 344566677777777777777777777777666543 57777777777777666554332
Q ss_pred CCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCE
Q 037651 349 WSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYI 428 (750)
Q Consensus 349 ~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 428 (750)
+++|+.|++++|.+++.+|..+.. +++|+.|++++|++.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.
T Consensus 331 -l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~ 408 (968)
T PLN00113 331 -LPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408 (968)
T ss_pred -CCCCCEEECcCCCCcCcCChHHhC-CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE
Confidence 567888888888888888877665 889999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCcc
Q 037651 429 LDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNH 508 (750)
Q Consensus 429 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~ 508 (750)
|++++|++++..|..+..++.|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|.... .++|+.|++++|+
T Consensus 409 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~~~L~~L~ls~n~ 486 (968)
T PLN00113 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQ 486 (968)
T ss_pred EECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--cccceEEECcCCc
Confidence 99999999999999999999999999999999999999899999999999999999988888663 7899999999999
Q ss_pred ceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhcccc
Q 037651 509 FNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLH 588 (750)
Q Consensus 509 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~ 588 (750)
+.+.+|..+..+++|+.|++++|++++.+|. .+.++++
T Consensus 487 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~------------------------------------------~~~~l~~ 524 (968)
T PLN00113 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPD------------------------------------------ELSSCKK 524 (968)
T ss_pred cCCccChhhhhhhccCEEECcCCcceeeCCh------------------------------------------HHcCccC
Confidence 9999999999999999999999999987664 5667888
Q ss_pred CCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceecCCCCCCCCCcccccccCC
Q 037651 589 LGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGEIPTANQFQTSLIRQFMRI 668 (750)
Q Consensus 589 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~n 668 (750)
|++|+|++|.+++.+|..++.+++|+.|||++|+++|.+|..+..+++|+++++++|+++|.+|..+++.++...++.||
T Consensus 525 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n 604 (968)
T PLN00113 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGN 604 (968)
T ss_pred CCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred CCCCC
Q 037651 669 PGADE 673 (750)
Q Consensus 669 ~~~~~ 673 (750)
|..|.
T Consensus 605 ~~lc~ 609 (968)
T PLN00113 605 IDLCG 609 (968)
T ss_pred ccccC
Confidence 87664
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.2e-59 Score=560.55 Aligned_cols=540 Identities=33% Similarity=0.533 Sum_probs=474.7
Q ss_pred CCCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCcccccc-CCCCCCEEeCcCCCCcccCCcccCCCCCCCE
Q 037651 5 LPSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLF-NITNLLSLDLNSNDLQGDIPDGFASLNSLQL 83 (750)
Q Consensus 5 l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 83 (750)
..+++.|+++++.+.+..+ ..+..+++|++|+|++|.+++.+|..+. .+++|++|+|++|.+++.+|. +.+++|++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CCcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 3579999999999998876 6788899999999999999988887655 999999999999999988875 56899999
Q ss_pred EECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEE
Q 037651 84 LDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYL 163 (750)
Q Consensus 84 L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 163 (750)
|++++|. +.+.+|..++.+++|++|++++|.+.+..|..++.++ +|++|++++|.+.+.+|..++++++|++|
T Consensus 145 L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~------~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 145 LDLSNNM-LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT------SLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred EECcCCc-ccccCChHHhcCCCCCEEECccCcccccCChhhhhCc------CCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 9999999 6778899999999999999999999999999998887 99999999999999999999999999999
Q ss_pred EccCCcccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCC
Q 037651 164 ELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSN 243 (750)
Q Consensus 164 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~ 243 (750)
++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|. .+.++++|++|++++|
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n-- 294 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDN-- 294 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCC--
Confidence 9999999999999999999999999999999999999999999999999999999987776 6778888877777664
Q ss_pred CCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcC
Q 037651 244 SSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRI 323 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 323 (750)
.+.+.+|.++..+++|+.|++++|.+.+..|..+... ++|+.|++++|.+++.+
T Consensus 295 -------------------------~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 295 -------------------------SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEI 348 (968)
T ss_pred -------------------------eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcC
Confidence 3345667777778888888888888887777766553 67888888888877766
Q ss_pred CCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCC
Q 037651 324 PNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLL 403 (750)
Q Consensus 324 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 403 (750)
|..+.. +++|+.|++++|.+++.+|..+.. +++|+.|++++|++.+.+|..+..+++|+
T Consensus 349 p~~l~~--------------------~~~L~~L~Ls~n~l~~~~p~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 349 PKNLGK--------------------HNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred ChHHhC--------------------CCCCcEEECCCCeeEeeCChhHhC-cCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 654432 467888888888888888877665 78899999999999999999899999999
Q ss_pred eEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCc
Q 037651 404 TLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQ 483 (750)
Q Consensus 404 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 483 (750)
.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|+
T Consensus 408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~ 486 (968)
T PLN00113 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQ 486 (968)
T ss_pred EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCc
Confidence 99999999999999999999999999999999999999888899999999999999998888765 46899999999999
Q ss_pred ccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEE
Q 037651 484 LSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQV 563 (750)
Q Consensus 484 ~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 563 (750)
+++.+|..+.. +++|+.|++++|++.+.+|..+..+++|++|+|++|.++|.+|.
T Consensus 487 l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~------------------------ 541 (968)
T PLN00113 487 FSGAVPRKLGS-LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA------------------------ 541 (968)
T ss_pred cCCccChhhhh-hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh------------------------
Confidence 99999988775 99999999999999999999999999999999999999987665
Q ss_pred EEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECc
Q 037651 564 AIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLS 643 (750)
Q Consensus 564 ~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 643 (750)
.++.+++|+.|+|++|++++.+|..+.++++|+.|++++|+++|.+|.. .....+....+.
T Consensus 542 ------------------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~ 602 (968)
T PLN00113 542 ------------------SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVA 602 (968)
T ss_pred ------------------hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhc
Confidence 4667788999999999999999999999999999999999999999965 334445555667
Q ss_pred CCc-cee
Q 037651 644 FNN-LSG 649 (750)
Q Consensus 644 ~N~-l~g 649 (750)
+|+ ++|
T Consensus 603 ~n~~lc~ 609 (968)
T PLN00113 603 GNIDLCG 609 (968)
T ss_pred CCccccC
Confidence 776 444
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=9e-41 Score=324.19 Aligned_cols=477 Identities=27% Similarity=0.364 Sum_probs=323.5
Q ss_pred CCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEE
Q 037651 30 FTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTL 109 (750)
Q Consensus 30 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 109 (750)
-..++.+++++|.+... .+.+.++..|.+|++++|++. ..|.+++.+..++.++.++|++ ..+|+.++.+.+|+.+
T Consensus 44 qv~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l--s~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL--SELPEQIGSLISLVKL 119 (565)
T ss_pred hcchhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH--hhccHHHhhhhhhhhh
Confidence 34567777777777643 334777777777888777777 6677777777777777777774 2367777777777777
Q ss_pred eCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeec
Q 037651 110 KLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYL 189 (750)
Q Consensus 110 ~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 189 (750)
+.+.|.+... ++.++.+- .|+.++..+|++. ..|.++..+.+|..+++.+|++....|. .-+++.|++||.
T Consensus 120 ~~s~n~~~el-~~~i~~~~------~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 120 DCSSNELKEL-PDSIGRLL------DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDC 190 (565)
T ss_pred hccccceeec-CchHHHHh------hhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhccc
Confidence 7777777643 33444444 6777777777777 5777777777777777777777644443 333777777777
Q ss_pred ccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEecccc
Q 037651 190 TSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQ 269 (750)
Q Consensus 190 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 269 (750)
..|-++ .+|+.++.+.+|..|++..|++.. .| .|..|..|+++.+
T Consensus 191 ~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lP--ef~gcs~L~Elh~------------------------------- 235 (565)
T KOG0472|consen 191 NSNLLE-TLPPELGGLESLELLYLRRNKIRF-LP--EFPGCSLLKELHV------------------------------- 235 (565)
T ss_pred chhhhh-cCChhhcchhhhHHHHhhhccccc-CC--CCCccHHHHHHHh-------------------------------
Confidence 777776 567777777777777777777653 33 3444444444444
Q ss_pred CCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCC
Q 037651 270 LGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLW 349 (750)
Q Consensus 270 ~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~ 349 (750)
+.|.+. .+|......++++..||+..|+++ ..|+....
T Consensus 236 --------------------g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-------------------- 273 (565)
T KOG0472|consen 236 --------------------GENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-------------------- 273 (565)
T ss_pred --------------------cccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH--------------------
Confidence 444333 344444444456666666666665 44443332
Q ss_pred CCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCC--CCCCeEE-------CccC---cc-ccc-
Q 037651 350 SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNL--KQLLTLV-------ISNN---NL-SGG- 415 (750)
Q Consensus 350 ~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l--~~L~~L~-------L~~n---~l-~~~- 415 (750)
+.+|+.||+++|.++ .+|..++. + .|+.|-+.+|++..+-.+.+..- .-|++|. ++.- .- ...
T Consensus 274 LrsL~rLDlSNN~is-~Lp~sLgn-l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 274 LRSLERLDLSNNDIS-SLPYSLGN-L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred hhhhhhhcccCCccc-cCCccccc-c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 456777777777776 66666665 4 78888888888652211111000 0011111 0100 00 001
Q ss_pred cC---ccccCCCCCCEEeCCCCccceeCCccccCCCC---CCEEEccCCcCcCCCCccccCCCCCC-EEecCCCcccccC
Q 037651 416 IP---QFLKNISSLYILDMTKNNFSGEIPESIGSLLT---IRFLVLSNNHLSGEIPPSLKNCSLMD-SLDLGENQLSGNI 488 (750)
Q Consensus 416 ~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~~~~~~ 488 (750)
.+ .......+.+.|++++-+++ .+|+.+..-.. ....+++.|++. ++|..+..+..+. .+++++|.+. .+
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv 427 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FV 427 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cc
Confidence 11 11234567889999999998 67766544333 788999999998 7888777666554 4566667665 67
Q ss_pred ChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecc
Q 037651 489 PAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGT 568 (750)
Q Consensus 489 p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 568 (750)
|..+.. +++|..|++++|.+. .+|..++.+..|+.||+|+|+|. .+|.++
T Consensus 428 ~~~l~~-l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~--------------------------- 477 (565)
T KOG0472|consen 428 PLELSQ-LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECL--------------------------- 477 (565)
T ss_pred hHHHHh-hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHH---------------------------
Confidence 777665 999999999999988 89999999999999999999887 556543
Q ss_pred eEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcce
Q 037651 569 QYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLS 648 (750)
Q Consensus 569 ~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 648 (750)
-.+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .+|..+++|++|++|++++|++.
T Consensus 478 ---------------y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 478 ---------------YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ---------------hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 33445566767779998666777999999999999999998 68999999999999999999998
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-38 Score=318.70 Aligned_cols=258 Identities=24% Similarity=0.248 Sum_probs=227.5
Q ss_pred CCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEE
Q 037651 350 SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYIL 429 (750)
Q Consensus 350 ~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 429 (750)
+.+|..|.|+.|+++ .+|...|+.+++|+.|++..|.+.-.---.|.++++|+.|.+..|.+...-...|..+.++++|
T Consensus 196 lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l 274 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHL 274 (873)
T ss_pred cchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccccee
Confidence 457888888888888 8888888889999999999999885556679999999999999999998888899999999999
Q ss_pred eCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccc
Q 037651 430 DMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHF 509 (750)
Q Consensus 430 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l 509 (750)
+|+.|++...-..++.++++|+.|++++|.|....++++.-+++|++|+|++|+++ .+++..+..+..|++|.|++|++
T Consensus 275 ~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 275 NLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred ecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccch
Confidence 99999999888889999999999999999999899999999999999999999999 78877777799999999999999
Q ss_pred eeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccC
Q 037651 510 NGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHL 589 (750)
Q Consensus 510 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L 589 (750)
...-...|..+++|+.|||++|.+++.|-+. ...|.++++|
T Consensus 354 ~~l~e~af~~lssL~~LdLr~N~ls~~IEDa---------------------------------------a~~f~gl~~L 394 (873)
T KOG4194|consen 354 DHLAEGAFVGLSSLHKLDLRSNELSWCIEDA---------------------------------------AVAFNGLPSL 394 (873)
T ss_pred HHHHhhHHHHhhhhhhhcCcCCeEEEEEecc---------------------------------------hhhhccchhh
Confidence 8666667889999999999999998655431 1247789999
Q ss_pred CeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCccee
Q 037651 590 GTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSG 649 (750)
Q Consensus 590 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g 649 (750)
+.|+|.+|++..+.-.+|..+..||.|||.+|.|..+-|..|..| .|+.|-+..-.+-|
T Consensus 395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLC 453 (873)
T ss_pred hheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEE
Confidence 999999999996666899999999999999999999999999999 89988876544433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.6e-40 Score=320.03 Aligned_cols=490 Identities=26% Similarity=0.359 Sum_probs=357.8
Q ss_pred CcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEEC
Q 037651 7 SIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDL 86 (750)
Q Consensus 7 ~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 86 (750)
-++.|.+++|.+....+ .+.++..+.+|++++|.+. .+|.+++.+..++.|+.++|++. .+|+.+..+.+|+.+++
T Consensus 46 ~l~~lils~N~l~~l~~--dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRE--DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhhccH--hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 46778889998887764 5677888999999999986 56777999999999999999998 78888999999999999
Q ss_pred cCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEcc
Q 037651 87 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELW 166 (750)
Q Consensus 87 s~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 166 (750)
++|.+. .+|+.++.+..|..++..+|+++... ..+..+. +|..+++.+|++.. .|...-+++.|++||..
T Consensus 122 s~n~~~--el~~~i~~~~~l~dl~~~~N~i~slp-~~~~~~~------~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 122 SSNELK--ELPDSIGRLLDLEDLDATNNQISSLP-EDMVNLS------KLSKLDLEGNKLKA-LPENHIAMKRLKHLDCN 191 (565)
T ss_pred ccccee--ecCchHHHHhhhhhhhccccccccCc-hHHHHHH------HHHHhhccccchhh-CCHHHHHHHHHHhcccc
Confidence 999853 36788889999999999999988654 4455554 78889999999884 55554558899999998
Q ss_pred CCcccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCc
Q 037651 167 YNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSL 246 (750)
Q Consensus 167 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 246 (750)
.|-+. .+|..++.+.+|+.||+..|++. ..| .|.++..|+.++++.|.+.- +|....++++++..||+.+|+.+.
T Consensus 192 ~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklke- 266 (565)
T KOG0472|consen 192 SNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLKE- 266 (565)
T ss_pred hhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeecccccccc-
Confidence 88776 67888999999999999999998 566 68889999999999998864 677677888889999988855422
Q ss_pred eEeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhc-CCCcEEEcCCCcCCCcCCC
Q 037651 247 SFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLN-LTLDELDVGGNHLSGRIPN 325 (750)
Q Consensus 247 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~ 325 (750)
.|+...-+.+|++|++++|.++ ..|..++++ +|+.|.+.||.+...-.+.+.... .-|++|.= .++..-+.
T Consensus 267 ---~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~dglS 338 (565)
T KOG0472|consen 267 ---VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDDGLS 338 (565)
T ss_pred ---CchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccCCCC
Confidence 2333344445666666666654 344446666 666666666655422111100000 00111100 00000000
Q ss_pred ccccCCCceEECCCCCCCCCCCCC--CCCCcEEEeecccccCCCCcchhccCC--CCCEEecCCCcCcccCCcCCcCCCC
Q 037651 326 TLVFRFPGSVDLSSNRFEGPLPLW--SSNLTKLYLRDNLFSGPIPNDLGQKTP--FLTDLDISFNSLNGSIPQSVGNLKQ 401 (750)
Q Consensus 326 ~~~~~~l~~l~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~i~~~~~~~~~--~L~~L~ls~n~l~~~~~~~~~~l~~ 401 (750)
...-..-..-+ ...+..|.. ..+.+.|++++-+++ .+|+..|.... -....+++.|++. .+|..+..+..
T Consensus 339 ~se~~~e~~~t----~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lke 412 (565)
T KOG0472|consen 339 QSEGGTETAMT----LPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKE 412 (565)
T ss_pred CCcccccccCC----CCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHH
Confidence 00000000000 001111111 346788999999998 89998886222 2788999999988 56766655665
Q ss_pred CCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCC
Q 037651 402 LLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGE 481 (750)
Q Consensus 402 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 481 (750)
+.+.-+..|+..+.+|..++.+++|+.|++++|-+. .+|..++.+..|+.|+++.|+|. .+|..+.....++.+-.++
T Consensus 413 lvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~ 490 (565)
T KOG0472|consen 413 LVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASN 490 (565)
T ss_pred HHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcc
Confidence 554444444444588999999999999999999888 89999999999999999999998 8898888888889998899
Q ss_pred CcccccCChh-hhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCC
Q 037651 482 NQLSGNIPAW-IGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLS 534 (750)
Q Consensus 482 n~~~~~~p~~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 534 (750)
|++. .++.. +. ++.+|..||+.+|.+. .+|+.++++++|++|++++|.|.
T Consensus 491 nqi~-~vd~~~l~-nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 491 NQIG-SVDPSGLK-NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccc-ccChHHhh-hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9997 56655 55 4999999999999998 89999999999999999999998
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-36 Score=308.44 Aligned_cols=389 Identities=22% Similarity=0.237 Sum_probs=253.0
Q ss_pred CCcEEECCCCCCCCCccccccCC--CCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEE
Q 037651 32 SLQVLDLSNNGFNSTIPHWLFNI--TNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTL 109 (750)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 109 (750)
.-+.||.+++.+.......+..+ +.-+.||+++|++..+.+..|.++++|+.+++..|.+ ..+|...+...+|+.|
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLEKL 130 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchh--hhcccccccccceeEE
Confidence 34577888887765422222222 3456799999999988888899999999999999974 3467766667779999
Q ss_pred eCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeec
Q 037651 110 KLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYL 189 (750)
Q Consensus 110 ~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 189 (750)
+|.+|.|+.+..+.++.++ .|+.|||+.|.|+..--.+|..-.++++|+|++|.|+....+.|..+.+|..|.|
T Consensus 131 ~L~~N~I~sv~se~L~~l~------alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALP------ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred eeeccccccccHHHHHhHh------hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 9999999988888888887 8999999999998544456777788999999999999888888999999999999
Q ss_pred ccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEecccc
Q 037651 190 TSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQ 269 (750)
Q Consensus 190 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 269 (750)
++|+++...+..|.++++|+.|+|..|++.- +....|..+++|+.|.+..|++..+.. ..+..+.++++|+++.|+
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~iri-ve~ltFqgL~Sl~nlklqrN~I~kL~D---G~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRI-VEGLTFQGLPSLQNLKLQRNDISKLDD---GAFYGLEKMEHLNLETNR 280 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceee-ehhhhhcCchhhhhhhhhhcCcccccC---cceeeecccceeecccch
Confidence 9999996666778889999999999998763 334467888888888888765533332 223344455555555555
Q ss_pred CCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCC
Q 037651 270 LGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLW 349 (750)
Q Consensus 270 ~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~ 349 (750)
+...-..|+.+++.|+.|+++.|.|...-++. |..+
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-Wsft------------------------------------------- 316 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WSFT------------------------------------------- 316 (873)
T ss_pred hhhhhcccccccchhhhhccchhhhheeecch-hhhc-------------------------------------------
Confidence 55555555555555555555555555433332 1222
Q ss_pred CCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCcccccc---CccccCCCCC
Q 037651 350 SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGI---PQFLKNISSL 426 (750)
Q Consensus 350 ~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L 426 (750)
++|++|+|++|+++ .++...+..+..|++|++++|.+...-..+|..+++|++|||++|.+...+ ...|.++++|
T Consensus 317 -qkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 317 -QKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred -ccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence 34444444444444 334333333455555555555555444445555555555555555554332 2234455555
Q ss_pred CEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEec
Q 037651 427 YILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDL 479 (750)
Q Consensus 427 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 479 (750)
+.|++.+|++...--.+|.+++.|+.|+|.+|.|..+-|.+|..+ .|++|.+
T Consensus 395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred hheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 555555555553333445555555555555555554555555554 4554443
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2e-37 Score=330.83 Aligned_cols=502 Identities=28% Similarity=0.374 Sum_probs=296.8
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCC
Q 037651 11 LHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNS 90 (750)
Q Consensus 11 L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 90 (750)
+|.+.+.+.-+|. -+..-..+..|+++.|.+-...-+.+.+.-+|+.||+++|++. ..|..+..+.+|+.|+++.|.
T Consensus 3 vd~s~~~l~~ip~--~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLELIPE--QILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCcccch--hhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence 5666666666664 2223334777777777665444445555556777777777777 667777777777777777776
Q ss_pred CcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcc
Q 037651 91 FLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSF 170 (750)
Q Consensus 91 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 170 (750)
| ...|....++.+|++|+|.+|.+. ..|..+..+. +|+.|++++|.+. .+|..+..+..+..++.++|..
T Consensus 80 i--~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lk------nl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~ 149 (1081)
T KOG0618|consen 80 I--RSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELK------NLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEK 149 (1081)
T ss_pred H--hhCchhhhhhhcchhheeccchhh-cCchhHHhhh------cccccccchhccC-CCchhHHhhhHHHHHhhhcchh
Confidence 4 235666777777777777777665 3455555555 6777777777766 5666666677777777777622
Q ss_pred cccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEec
Q 037651 171 LGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNI 250 (750)
Q Consensus 171 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 250 (750)
... ++... ++.+++..|.+.+.++..+..+.. .|+|.+|.+.. ..+.++.+|+.+....+....+..
T Consensus 150 ~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~----~dls~~~~l~~l~c~rn~ls~l~~-- 216 (1081)
T KOG0618|consen 150 IQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV----LDLSNLANLEVLHCERNQLSELEI-- 216 (1081)
T ss_pred hhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhh----hhhhhccchhhhhhhhcccceEEe--
Confidence 212 22222 666677777776666666655555 57777776641 134555555555554433211111
Q ss_pred cCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccC
Q 037651 251 SFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFR 330 (750)
Q Consensus 251 ~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 330 (750)
.- ++++.|+.++|.++ .........
T Consensus 217 -----------------------------~g-------------------------~~l~~L~a~~n~l~-~~~~~p~p~ 241 (1081)
T KOG0618|consen 217 -----------------------------SG-------------------------PSLTALYADHNPLT-TLDVHPVPL 241 (1081)
T ss_pred -----------------------------cC-------------------------cchheeeeccCcce-eeccccccc
Confidence 01 23444444444443 111111122
Q ss_pred CCceEECCCCCCCCCCCCC---CCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEEC
Q 037651 331 FPGSVDLSSNRFEGPLPLW---SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVI 407 (750)
Q Consensus 331 ~l~~l~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 407 (750)
+++++|++.|.+++.. .| +.+|+.++..+|.++ .+|..++. ..+|+.|.+..|.+. .+|...++.++|++|+|
T Consensus 242 nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 2333333333333221 22 456667777777765 66666655 566777777777666 44555566667777777
Q ss_pred ccCccccccCccccCCCC-CCEEeCCCCccceeCCcc-ccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCccc
Q 037651 408 SNNNLSGGIPQFLKNISS-LYILDMTKNNFSGEIPES-IGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLS 485 (750)
Q Consensus 408 ~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 485 (750)
..|++....+..+..... |..|+.+.|++. ..|.. =...+.|+.|++.+|.++...-..+.+..+|+.|+|++|++.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 777766333333333332 556666666665 33311 122456667777777776666666667777777777777765
Q ss_pred ccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEE
Q 037651 486 GNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAI 565 (750)
Q Consensus 486 ~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~ 565 (750)
.+|+.....++.|++|+||+|+++ .+|..+..+..|++|...+|++. .
T Consensus 397 -~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~----------------------------- 444 (1081)
T KOG0618|consen 397 -SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-S----------------------------- 444 (1081)
T ss_pred -cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-e-----------------------------
Confidence 677666666677777777777776 66667777777777777666665 1
Q ss_pred ecceEeecccccccchhhhccccCCeEeccCCcCCC-CcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcC
Q 037651 566 KGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVG-KIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSF 644 (750)
Q Consensus 566 ~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~ 644 (750)
.| ++..++.|+.+|+|.|+++. .+|..... ++|++||+++|.-...--..|..+.++..+++.-
T Consensus 445 -------------fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 445 -------------FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITL 509 (1081)
T ss_pred -------------ch-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheeccc
Confidence 23 56677777778888887763 33443333 6777888887774434444555556666666655
Q ss_pred C
Q 037651 645 N 645 (750)
Q Consensus 645 N 645 (750)
|
T Consensus 510 ~ 510 (1081)
T KOG0618|consen 510 N 510 (1081)
T ss_pred C
Confidence 5
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=9.5e-36 Score=318.05 Aligned_cols=480 Identities=30% Similarity=0.370 Sum_probs=318.0
Q ss_pred EECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCcCcc
Q 037651 36 LDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQ 115 (750)
Q Consensus 36 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~ 115 (750)
+|++.+++. .+|..+..-..++.|+++.|-+....-+.+.+.-+|+.||+++|.+ +..|..+..+.+|+.|+++.|.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~--~~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI--SSFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeecccccc--ccCCchhhhHHHHhhcccchhh
Confidence 456666654 4555555555577777777765532223444555577777777764 3356666667777777777776
Q ss_pred cccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeecccccCC
Q 037651 116 FRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMN 195 (750)
Q Consensus 116 l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 195 (750)
+... |.....+. +|+++.|..|.+. ..|.++..+++|++|+++.|++. .+|..+..++.++++..++|...
T Consensus 80 i~~v-p~s~~~~~------~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~ 150 (1081)
T KOG0618|consen 80 IRSV-PSSCSNMR------NLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI 150 (1081)
T ss_pred HhhC-chhhhhhh------cchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh
Confidence 6533 23333332 6666666666665 56666666666666666666655 55555666666666666666211
Q ss_pred cccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEeccccCCCCCC
Q 037651 196 GKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFP 275 (750)
Q Consensus 196 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p 275 (750)
.. +++.. ++.+++..|.+.+.+.
T Consensus 151 ~~----lg~~~-ik~~~l~~n~l~~~~~---------------------------------------------------- 173 (1081)
T KOG0618|consen 151 QR----LGQTS-IKKLDLRLNVLGGSFL---------------------------------------------------- 173 (1081)
T ss_pred hh----hcccc-chhhhhhhhhcccchh----------------------------------------------------
Confidence 11 22221 4555555554444332
Q ss_pred hhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCC-CCCCc
Q 037651 276 TWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLW-SSNLT 354 (750)
Q Consensus 276 ~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~-~~~L~ 354 (750)
.....+.. .|++..|.+.... ...+..|+.+....|++... ....++++.++.++|.+....+.. ..+|+
T Consensus 174 ~~i~~l~~--~ldLr~N~~~~~d----ls~~~~l~~l~c~rn~ls~l---~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~ 244 (1081)
T KOG0618|consen 174 IDIYNLTH--QLDLRYNEMEVLD----LSNLANLEVLHCERNQLSEL---EISGPSLTALYADHNPLTTLDVHPVPLNLQ 244 (1081)
T ss_pred cchhhhhe--eeecccchhhhhh----hhhccchhhhhhhhcccceE---EecCcchheeeeccCcceeeccccccccce
Confidence 22222222 3444444443110 01124555566666555421 122346778888888887655443 46899
Q ss_pred EEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCC
Q 037651 355 KLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKN 434 (750)
Q Consensus 355 ~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 434 (750)
++++++|+++ .+|.++.. +.+|+.++..+|+++ .+|..+....+|+.|.+..|.+. .+|......+.|++|+|..|
T Consensus 245 ~~dis~n~l~-~lp~wi~~-~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 245 YLDISHNNLS-NLPEWIGA-CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred eeecchhhhh-cchHHHHh-cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhc
Confidence 9999999998 78866555 899999999999995 66666777888999999999988 67777888999999999999
Q ss_pred ccceeCCccccC-CC-CCCEEEccCCcCcCCCC-ccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCcccee
Q 037651 435 NFSGEIPESIGS-LL-TIRFLVLSNNHLSGEIP-PSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG 511 (750)
Q Consensus 435 ~l~~~~~~~~~~-l~-~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~ 511 (750)
++. ..|+.+.. .. .|+.|+.+.|++. ..| ..=...+.|+.|.+.+|.++...-..+. +..+|+.|+|++|++..
T Consensus 321 ~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 321 NLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred ccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeeeccccccc
Confidence 988 66665432 22 3677778888876 333 2223456788999999999865544444 48899999999999983
Q ss_pred ecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCe
Q 037651 512 TIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGT 591 (750)
Q Consensus 512 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~ 591 (750)
.....+.++..|+.|+||+|+++. +|.++..+..|++
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~-------------------------------------------Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTT-------------------------------------------LPDTVANLGRLHT 434 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhh-------------------------------------------hhHHHHhhhhhHH
Confidence 334467889999999999998872 4556778888999
Q ss_pred EeccCCcCCCCcccccCCCccCcEEEccCCccCcC-CCccccCCCCCCeEECcCCc
Q 037651 592 LNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGS-IPPSMVSIRFLSFLNLSFNN 646 (750)
Q Consensus 592 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~l~ls~N~ 646 (750)
|...+|++. ..| .+..++.|+.+|+|.|+++.. +|...-. ++|++||+++|.
T Consensus 435 L~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 435 LRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred HhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 999999998 778 789999999999999999743 3433322 799999999995
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-33 Score=288.41 Aligned_cols=277 Identities=31% Similarity=0.414 Sum_probs=181.6
Q ss_pred CCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEe
Q 037651 351 SNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILD 430 (750)
Q Consensus 351 ~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 430 (750)
.++-.|++++|+|. .||..++.++..|-.||+|+|++. .+|..+..+..|++|+|++|.+.-.--..+..+++|++|.
T Consensus 126 Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH 203 (1255)
T ss_pred cCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence 35556666666665 666666666666667777777666 3444456666777777777766543334445566666666
Q ss_pred CCCCccc-eeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccc
Q 037651 431 MTKNNFS-GEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHF 509 (750)
Q Consensus 431 Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l 509 (750)
+++.+-+ .-+|.++..+.+|..+|++.|.+. ..|+.+..+++|+.|+||+|+|+ .+...... ..+|++|++|.|++
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~-W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGE-WENLETLNLSRNQL 280 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHH-Hhhhhhhccccchh
Confidence 6665422 356666666777777777777766 66666777777777777777766 45544443 55677777777777
Q ss_pred eeecCccccCCCCCcEEEcccCcCCC-cCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhcccc
Q 037651 510 NGTIPSELCKLSALHILDLSHNNLSG-PIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLH 588 (750)
Q Consensus 510 ~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~ 588 (750)
+ ..|..++.++.|+.|.+.+|+++- -||..++.+..|.+.. ..++.++..|+.+..|..
T Consensus 281 t-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~-------------------aanN~LElVPEglcRC~k 340 (1255)
T KOG0444|consen 281 T-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH-------------------AANNKLELVPEGLCRCVK 340 (1255)
T ss_pred c-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHH-------------------hhccccccCchhhhhhHH
Confidence 6 667777777777777777776652 2666666665554321 112334567888999999
Q ss_pred CCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcC---C--cceecCCC
Q 037651 589 LGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSF---N--NLSGEIPT 653 (750)
Q Consensus 589 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~---N--~l~g~ip~ 653 (750)
|+.|.|++|++. ..|+++.-++.|+.||+..|.-....|..-..-+.|+.-++.. + .+.|..|.
T Consensus 341 L~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pa 409 (1255)
T KOG0444|consen 341 LQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPA 409 (1255)
T ss_pred HHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCcc
Confidence 999999999987 7899999999999999999987744443222335676665543 2 45675553
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.8e-33 Score=287.04 Aligned_cols=386 Identities=28% Similarity=0.404 Sum_probs=248.8
Q ss_pred CCCCcEEECCCCCCC-CCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCE
Q 037651 30 FTSLQVLDLSNNGFN-STIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQT 108 (750)
Q Consensus 30 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 108 (750)
++-+|-.|+++|.++ +..|.....+++++-|.|...++. .+|+.++.+.+|++|.+++|++.+ +-..+..++.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~--vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS--VHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh--hhhhhccchhhHH
Confidence 344555555555555 345555555555555555555555 455555556666666666555322 2334455555555
Q ss_pred EeCcCccccc-ccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCee
Q 037651 109 LKLSLNQFRG-EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEEL 187 (750)
Q Consensus 109 L~Ls~n~l~~-~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 187 (750)
+.+..|++.. .+|..+-.+. .|..|||++|++. ..|..+..-+++-+|+||+|+|..+....|.+++.|-.|
T Consensus 83 v~~R~N~LKnsGiP~diF~l~------dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLK------DLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred HhhhccccccCCCCchhcccc------cceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence 5555555542 2333333343 5556666666665 566666666777777777777764444446677778888
Q ss_pred ecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEecc
Q 037651 188 YLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRY 267 (750)
Q Consensus 188 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 267 (750)
|||+|++. ..|+.+..+..|++|+|++|++.-. .++.+|+++.|
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hf----QLrQLPsmtsL------------------------------- 199 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHF----QLRQLPSMTSL------------------------------- 199 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHH----HHhcCccchhh-------------------------------
Confidence 88888877 5666777777888888888776431 33333332221
Q ss_pred ccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCC
Q 037651 268 YQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLP 347 (750)
Q Consensus 268 ~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~ 347 (750)
+.|.+++.+-+ ...+|..+..
T Consensus 200 -----------------~vLhms~TqRT------------------------l~N~Ptsld~------------------ 220 (1255)
T KOG0444|consen 200 -----------------SVLHMSNTQRT------------------------LDNIPTSLDD------------------ 220 (1255)
T ss_pred -----------------hhhhcccccch------------------------hhcCCCchhh------------------
Confidence 11111111100 0011111110
Q ss_pred CCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCC
Q 037651 348 LWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLY 427 (750)
Q Consensus 348 ~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 427 (750)
+.+|..++++.|++. .+|..+.. +++|+.|++|+|+++. +....+...+|++|+++.|+++ .+|++++++++|+
T Consensus 221 --l~NL~dvDlS~N~Lp-~vPecly~-l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 221 --LHNLRDVDLSENNLP-IVPECLYK-LRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred --hhhhhhccccccCCC-cchHHHhh-hhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence 346666677777776 77887776 8889999999999884 3333445678889999999988 7888899999999
Q ss_pred EEeCCCCccc-eeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccC
Q 037651 428 ILDMTKNNFS-GEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRS 506 (750)
Q Consensus 428 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~ 506 (750)
.|.+.+|+++ .-+|..++.+.+|+.+..++|.+. ..|..++.|..|+.|.|+.|++. ++|+.+.- ++.|+.||++.
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHl-L~~l~vLDlre 371 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHL-LPDLKVLDLRE 371 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhh-cCCcceeeccC
Confidence 9999988876 357888888889999988888887 78888999999999999999887 88888875 88999999998
Q ss_pred ccceeecCccccCCCCCcEEEcc
Q 037651 507 NHFNGTIPSELCKLSALHILDLS 529 (750)
Q Consensus 507 n~l~~~~p~~l~~l~~L~~L~Ls 529 (750)
|.-.-..|..-..-+.|+.-++.
T Consensus 372 NpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 372 NPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred CcCccCCCCcchhhhcceeeecc
Confidence 87663444332223456655543
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=8.9e-23 Score=245.31 Aligned_cols=241 Identities=20% Similarity=0.241 Sum_probs=162.9
Q ss_pred CceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEEC
Q 037651 258 FKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL 337 (750)
Q Consensus 258 ~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l 337 (750)
++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ .+++|+.|++++|...
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L----------------- 717 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRL----------------- 717 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCc-----------------
Confidence 344444444444445566667777777777777766555555433 2345666666655433
Q ss_pred CCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCc-------ccCCcCCcCCCCCCeEECccC
Q 037651 338 SSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLN-------GSIPQSVGNLKQLLTLVISNN 410 (750)
Q Consensus 338 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~-------~~~~~~~~~l~~L~~L~L~~n 410 (750)
+.+|....+|+.|++++|.+. .+|..+ .+++|++|++.++... ...+..+..+++|+.|++++|
T Consensus 718 ------~~~p~~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 718 ------KSFPDISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred ------cccccccCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 333333456777777777775 666544 3677777777764421 111222233567888888888
Q ss_pred ccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCCh
Q 037651 411 NLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA 490 (750)
Q Consensus 411 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~ 490 (750)
...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|+.|+|++|.+. .+|.
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~ 863 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPW 863 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChH
Confidence 7777788888888888888888876555777665 6788888888887665555543 357888888888887 7888
Q ss_pred hhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCc
Q 037651 491 WIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNN 532 (750)
Q Consensus 491 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 532 (750)
++.. +++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 864 si~~-l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 864 WIEK-FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred HHhc-CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 8765 8888888888866555777778888888888888885
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.6e-22 Score=240.10 Aligned_cols=345 Identities=23% Similarity=0.257 Sum_probs=205.8
Q ss_pred CCCCCCCCCcEEECCCCCC------CCCccccccCCC-CCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccc
Q 037651 25 FPSLNFTSLQVLDLSNNGF------NSTIPHWLFNIT-NLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLS 97 (750)
Q Consensus 25 ~~~~~l~~L~~L~Ls~n~i------~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~ 97 (750)
.++..+++|+.|.+..+.. ...+|+.|..++ +|+.|++.++.+. .+|..| ...+|++|++++|++ . .++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l-~-~L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKL-E-KLW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccc-c-ccc
Confidence 3566778888888765432 223566666654 5888888888776 667666 467888888888874 2 356
Q ss_pred cccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCcc
Q 037651 98 RNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS 177 (750)
Q Consensus 98 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 177 (750)
..+..+++|++|+++++.....+|. ++.++ +|++|++++|.....+|..++++++|+.|++++|...+.+|..
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~------~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMAT------NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCC------cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 6677888888888887654444443 34343 8888888887766678888888888888888887666667765
Q ss_pred ccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCC
Q 037651 178 IGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPP 257 (750)
Q Consensus 178 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 257 (750)
+ ++++|++|++++|.....+|.. .++|+.|++++|.+.. +|. . ..+++|++|.+.++....+....
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~-~-~~l~~L~~L~l~~~~~~~l~~~~------- 766 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPS-N-LRLENLDELILCEMKSEKLWERV------- 766 (1153)
T ss_pred C-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccc-c-ccccccccccccccchhhccccc-------
Confidence 5 6888888888888665555542 3577888888887754 443 1 24667777777653221111000
Q ss_pred CceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEEC
Q 037651 258 FKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL 337 (750)
Q Consensus 258 ~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l 337 (750)
....+......++|+.|++++|.....+|..+.. +++|+.|++++|...+.+|.......++.|++
T Consensus 767 -------------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~L 832 (1153)
T PLN03210 767 -------------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPTGINLESLESLDL 832 (1153)
T ss_pred -------------cccchhhhhccccchheeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCCCCCccccCEEEC
Confidence 0011111122344555555555544445544433 24555555555543334444333334444444
Q ss_pred CCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccC
Q 037651 338 SSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNN 410 (750)
Q Consensus 338 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n 410 (750)
++|.....+|....+|+.|++++|.++ .+|..+.. +++|+.|++++|+-...+|..+..+++|+.+++++|
T Consensus 833 s~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~-l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 833 SGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEK-FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCCccccccccccccCEeECCCCCCc-cChHHHhc-CCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 444433334444456666666666665 55555433 566666666665443344444555555555555555
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=3.8e-25 Score=215.62 Aligned_cols=233 Identities=24% Similarity=0.294 Sum_probs=136.4
Q ss_pred ccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCc
Q 037651 363 FSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPE 442 (750)
Q Consensus 363 l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 442 (750)
.-+..|...++.+++|++|++++|+++++-+.+|.+...+++|.|..|++.......|.++..|++|+|.+|+|+...|.
T Consensus 261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 33466777777788888888888888888888888888888888888888766667777888888888888888777777
Q ss_pred cccCCCCCCEEEccCCcCcCCCCccccCCCCCCEE--ecCCCcccccCChhhhhcCCCCCEEEccCccceee---cCccc
Q 037651 443 SIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSL--DLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT---IPSEL 517 (750)
Q Consensus 443 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L--~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~---~p~~l 517 (750)
+|..+.+|.+|++-.|.+--. | .|..| -+..+...| .|..- ....++.+.+++..+... .|++.
T Consensus 341 aF~~~~~l~~l~l~~Np~~Cn-------C-~l~wl~~Wlr~~~~~~-~~~Cq--~p~~~~~~~~~dv~~~~~~c~~~ee~ 409 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPFNCN-------C-RLAWLGEWLRKKSVVG-NPRCQ--SPGFVRQIPISDVAFGDFRCGGPEEL 409 (498)
T ss_pred cccccceeeeeehccCcccCc-------c-chHHHHHHHhhCCCCC-CCCCC--CCchhccccchhccccccccCCcccc
Confidence 777777777777776655311 0 00000 001111111 11110 122344444444433211 11111
Q ss_pred cCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCC
Q 037651 518 CKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGN 597 (750)
Q Consensus 518 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N 597 (750)
+. .-++.-| ...+-+... -...+..+..+|..+. ....+|++.+|
T Consensus 410 ~~------------~~s~~cP---~~c~c~~tV------------------vRcSnk~lk~lp~~iP--~d~telyl~gn 454 (498)
T KOG4237|consen 410 GC------------LTSSPCP---PPCTCLDTV------------------VRCSNKLLKLLPRGIP--VDVTELYLDGN 454 (498)
T ss_pred CC------------CCCCCCC---CCcchhhhh------------------HhhcccchhhcCCCCC--chhHHHhcccc
Confidence 10 0000000 000000000 0000001111222211 23467899999
Q ss_pred cCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCC
Q 037651 598 QLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFN 645 (750)
Q Consensus 598 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 645 (750)
.++ .+|.. .+.+| .+|+|+|+++..--..|.++++|.+|-+|||
T Consensus 455 ~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 455 AIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 998 77876 67888 9999999999777778999999999999987
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=3.2e-22 Score=222.58 Aligned_cols=240 Identities=28% Similarity=0.355 Sum_probs=132.0
Q ss_pred CceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCc
Q 037651 332 PGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNN 411 (750)
Q Consensus 332 l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 411 (750)
++.|++++|.++. +|..+++|++|++++|+++ .+|.. .++|+.|++++|.+.. +|.. +.+|+.|++++|+
T Consensus 224 L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~ 293 (788)
T PRK15387 224 ITTLVIPDNNLTS-LPALPPELRTLEVSGNQLT-SLPVL----PPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQ 293 (788)
T ss_pred CCEEEccCCcCCC-CCCCCCCCcEEEecCCccC-cccCc----ccccceeeccCCchhh-hhhc---hhhcCEEECcCCc
Confidence 3444444444332 2333456666666666665 44432 3456666666666552 2321 2456666666666
Q ss_pred cccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChh
Q 037651 412 LSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAW 491 (750)
Q Consensus 412 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~ 491 (750)
++. +|. ..++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..
T Consensus 294 Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls-~LP~l 360 (788)
T PRK15387 294 LTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLA-SLPTL 360 (788)
T ss_pred ccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceEecCCCccC-CCCCC
Confidence 652 333 23456666666666663 3331 234566666666665 34421 135666666666666 45542
Q ss_pred hhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEe
Q 037651 492 IGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYV 571 (750)
Q Consensus 492 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 571 (750)
.++|+.|++++|++. .+|.. ..+|+.|++++|++++ +|..
T Consensus 361 ----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l------------------------------- 400 (788)
T PRK15387 361 ----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL------------------------------- 400 (788)
T ss_pred ----Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc-------------------------------
Confidence 345666666666666 35532 2456666666666652 3321
Q ss_pred ecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceecC
Q 037651 572 YQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGEI 651 (750)
Q Consensus 572 ~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~i 651 (750)
.++|+.|++++|+++ .+|... .+|+.|++++|+++ .+|..+..++.|+.+++++|+|+|.+
T Consensus 401 --------------~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 401 --------------PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred --------------ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence 124566666666666 355432 34566666666666 46666666666666666666666665
Q ss_pred CC
Q 037651 652 PT 653 (750)
Q Consensus 652 p~ 653 (750)
|.
T Consensus 462 ~~ 463 (788)
T PRK15387 462 LQ 463 (788)
T ss_pred HH
Confidence 43
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=2.3e-24 Score=210.17 Aligned_cols=149 Identities=27% Similarity=0.302 Sum_probs=126.9
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcC-
Q 037651 10 ELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSG- 88 (750)
Q Consensus 10 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~- 88 (750)
..+.++.+++++|...+ +.-..++|..|+|+.+.+.+|..+++||.||||+|.|+.+.|++|.++.+|..|-+.+
T Consensus 50 ~VdCr~~GL~eVP~~LP----~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLP----PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred eEEccCCCcccCcccCC----CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 46777788888876333 5778999999999999999999999999999999999999999999999998887777
Q ss_pred CCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCC
Q 037651 89 NSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYN 168 (750)
Q Consensus 89 n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 168 (750)
|+ ++......|++|..|+.|.+.-|++.-...+.|..++ +|..|.+.+|.+...-..+|..+..++.+.+..|
T Consensus 126 Nk-I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~------~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 126 NK-ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP------SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred Cc-hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh------hcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 77 5544456789999999999999999999899999888 8999999999988433348889999999988887
Q ss_pred c
Q 037651 169 S 169 (750)
Q Consensus 169 ~ 169 (750)
.
T Consensus 199 p 199 (498)
T KOG4237|consen 199 P 199 (498)
T ss_pred c
Confidence 6
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.3e-21 Score=217.66 Aligned_cols=265 Identities=25% Similarity=0.312 Sum_probs=191.1
Q ss_pred ccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccc
Q 037651 284 LTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLF 363 (750)
Q Consensus 284 L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l 363 (750)
-..|+++++.++ .+|..+. +.++.|++.+|+++. +|.. .+.+++|++++|.++. +|..+++|+.|++++|.+
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l--p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL--PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPL 274 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC--CCCCcEEEecCCccCc-ccCcccccceeeccCCch
Confidence 445666666665 3444332 356666666666653 4432 3466677777776664 344567888888888888
Q ss_pred cCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCcc
Q 037651 364 SGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPES 443 (750)
Q Consensus 364 ~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 443 (750)
+ .+|.. .++|+.|++++|+++. +|.. +++|+.|++++|++.+ +|.. ..+|+.|++++|+++ .+|..
T Consensus 275 ~-~Lp~l----p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l 340 (788)
T PRK15387 275 T-HLPAL----PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL 340 (788)
T ss_pred h-hhhhc----hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc
Confidence 7 55542 3568889999998874 4432 5789999999998885 4432 246788889999987 46642
Q ss_pred ccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCC
Q 037651 444 IGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSAL 523 (750)
Q Consensus 444 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 523 (750)
..+|+.|++++|+++ .+|.. ..+|+.|++++|++. .+|.. ..+|+.|++++|+++ .+|.. .++|
T Consensus 341 ---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt-~LP~l---~s~L 404 (788)
T PRK15387 341 ---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLT-SLPVL---PSEL 404 (788)
T ss_pred ---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc----ccccceEEecCCccc-CCCCc---ccCC
Confidence 257899999999998 45543 357888999999998 67753 467999999999998 46643 3679
Q ss_pred cEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCc
Q 037651 524 HILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKI 603 (750)
Q Consensus 524 ~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 603 (750)
+.|++++|++++ +|.. ..+|+.|++++|+++ .+
T Consensus 405 ~~LdLS~N~Lss-IP~l---------------------------------------------~~~L~~L~Ls~NqLt-~L 437 (788)
T PRK15387 405 KELMVSGNRLTS-LPML---------------------------------------------PSGLLSLSVYRNQLT-RL 437 (788)
T ss_pred CEEEccCCcCCC-CCcc---------------------------------------------hhhhhhhhhccCccc-cc
Confidence 999999999874 5531 124678999999998 78
Q ss_pred ccccCCCccCcEEEccCCccCcCCCccccC
Q 037651 604 PTQIGKLEWLESLDLSRNKLSGSIPPSMVS 633 (750)
Q Consensus 604 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 633 (750)
|..+.+++.|+.|+|++|++++.+|..+..
T Consensus 438 P~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 438 PESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 999999999999999999999988877643
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=4e-20 Score=207.50 Aligned_cols=202 Identities=25% Similarity=0.431 Sum_probs=91.9
Q ss_pred CCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCc
Q 037651 308 TLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNS 387 (750)
Q Consensus 308 ~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~ 387 (750)
+...|++++++++ .+|..+ ...+..|++++|.+.......+++|++|++++|.++ .+|..+. ++|+.|++++|.
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I-p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI-PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP---DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcC-cCCccc-ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh---ccccEEECcCCc
Confidence 4567777777776 344432 124555555555555332223345555555555554 4444332 245555555555
Q ss_pred CcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCcc
Q 037651 388 LNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPS 467 (750)
Q Consensus 388 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 467 (750)
+. .+|..+ ..+|+.|++++|++. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..
T Consensus 253 L~-~LP~~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~ 322 (754)
T PRK15370 253 IT-ELPERL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPET 322 (754)
T ss_pred cC-cCChhH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCcc
Confidence 44 233332 234555555555554 2333322 24555555555544 2333221 24444555555544 23322
Q ss_pred ccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCC
Q 037651 468 LKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLS 534 (750)
Q Consensus 468 ~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 534 (750)
+. ++|+.|++++|.++ .+|..+ .++|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 323 l~--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 323 LP--PGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred cc--ccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence 21 34455555555544 344333 234555555555444 3343331 34555555555444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=5e-20 Score=206.78 Aligned_cols=227 Identities=24% Similarity=0.420 Sum_probs=134.3
Q ss_pred cccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeeccc
Q 037651 283 ELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNL 362 (750)
Q Consensus 283 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~ 362 (750)
+...|+++++.++. +|..+ .+.++.|++++|+++ .+|.... .+++.|++++|.+..........|+.|++++|.
T Consensus 179 ~~~~L~L~~~~Lts-LP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~-~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACI---PEQITTLILDNNELK-SLPENLQ-GNIKTLYANSNQLTSIPATLPDTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCc-CCccc---ccCCcEEEecCCCCC-cCChhhc-cCCCEEECCCCccccCChhhhccccEEECcCCc
Confidence 45566676666653 34322 245677777777766 3444332 366777777777664322234467777777777
Q ss_pred ccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCc
Q 037651 363 FSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPE 442 (750)
Q Consensus 363 l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 442 (750)
+. .+|..+. ++|+.|++++|++. .+|..+ .++|+.|++++|++++ +|..+. ++|+.|++++|+++ .+|.
T Consensus 253 L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~ 321 (754)
T PRK15370 253 IT-ELPERLP---SALQSLDLFHNKIS-CLPENL--PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPE 321 (754)
T ss_pred cC-cCChhHh---CCCCEEECcCCccC-cccccc--CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCc
Confidence 66 5665543 35777777777666 345444 2467777777776663 343332 35666777777766 3444
Q ss_pred cccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCC
Q 037651 443 SIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSA 522 (750)
Q Consensus 443 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 522 (750)
.+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|+++ .+|..+. ..
T Consensus 322 ~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP~~l~--~s 389 (754)
T PRK15370 322 TLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLPENLP--AA 389 (754)
T ss_pred ccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCCHhHH--HH
Confidence 332 567777777777663 554442 56777777777766 566544 356777777777766 4554443 35
Q ss_pred CcEEEcccCcCCCcCCc
Q 037651 523 LHILDLSHNNLSGPIPH 539 (750)
Q Consensus 523 L~~L~Ls~n~l~~~~p~ 539 (750)
|+.|++++|+++ .+|.
T Consensus 390 L~~LdLs~N~L~-~LP~ 405 (754)
T PRK15370 390 LQIMQASRNNLV-RLPE 405 (754)
T ss_pred HHHHhhccCCcc-cCch
Confidence 666777777665 3443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=3.4e-19 Score=186.72 Aligned_cols=182 Identities=24% Similarity=0.333 Sum_probs=81.5
Q ss_pred CCCcEEEeecccccCC----CCcchhccCCCCCEEecCCCcCcc------cCCcCCcCCCCCCeEECccCccccccCccc
Q 037651 351 SNLTKLYLRDNLFSGP----IPNDLGQKTPFLTDLDISFNSLNG------SIPQSVGNLKQLLTLVISNNNLSGGIPQFL 420 (750)
Q Consensus 351 ~~L~~L~l~~n~l~~~----i~~~~~~~~~~L~~L~ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 420 (750)
..|++++++++.+++. ++..+ ...+++++++++++.+.+ .++..+..+++|++|++++|.+.+..+..+
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 3466666666665422 22222 124456666666555441 112233445555555555555543333333
Q ss_pred cCCCC---CCEEeCCCCccce----eCCccccCC-CCCCEEEccCCcCcCC----CCccccCCCCCCEEecCCCcccccC
Q 037651 421 KNISS---LYILDMTKNNFSG----EIPESIGSL-LTIRFLVLSNNHLSGE----IPPSLKNCSLMDSLDLGENQLSGNI 488 (750)
Q Consensus 421 ~~l~~---L~~L~Ls~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~ 488 (750)
..+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 33333 5555555555542 111223333 4555555555555421 2223444445555555555554211
Q ss_pred ----ChhhhhcCCCCCEEEccCccceee----cCccccCCCCCcEEEcccCcCC
Q 037651 489 ----PAWIGESMPSLSILRLRSNHFNGT----IPSELCKLSALHILDLSHNNLS 534 (750)
Q Consensus 489 ----p~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~ 534 (750)
+..+.. .++|+.|++++|.+.+. ++..+..+++|++|++++|.++
T Consensus 182 ~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 182 IRALAEGLKA-NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHHh-CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 111111 33555555555554322 1223334455555555555544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=4.2e-19 Score=186.00 Aligned_cols=160 Identities=26% Similarity=0.317 Sum_probs=96.3
Q ss_pred CCCCCEEecCCCcCcccCCcCCcCCCC---CCeEECccCcccc----ccCccccCC-CCCCEEeCCCCcccee----CCc
Q 037651 375 TPFLTDLDISFNSLNGSIPQSVGNLKQ---LLTLVISNNNLSG----GIPQFLKNI-SSLYILDMTKNNFSGE----IPE 442 (750)
Q Consensus 375 ~~~L~~L~ls~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~Ls~n~l~~~----~~~ 442 (750)
+++|++|++++|.+.+..+..+..+.. |++|++++|++.+ .+...+..+ ++|+.|++++|.+++. ++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 667777777777776544444443443 7777777777763 223344555 6777777777777632 233
Q ss_pred cccCCCCCCEEEccCCcCcCC----CCccccCCCCCCEEecCCCcccccCChhh---hhcCCCCCEEEccCccceeecCc
Q 037651 443 SIGSLLTIRFLVLSNNHLSGE----IPPSLKNCSLMDSLDLGENQLSGNIPAWI---GESMPSLSILRLRSNHFNGTIPS 515 (750)
Q Consensus 443 ~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~l~~L~~L~Ls~n~l~~~~p~ 515 (750)
.+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+.....+ ...+++|++|++++|++++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 455566777777777777632 23344555677777777777753222211 12366777777777777642222
Q ss_pred ccc-----CCCCCcEEEcccCcCC
Q 037651 516 ELC-----KLSALHILDLSHNNLS 534 (750)
Q Consensus 516 ~l~-----~l~~L~~L~Ls~n~l~ 534 (750)
.+. ..+.|+.|++++|.++
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCC
Confidence 221 1356777777777665
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1e-18 Score=151.40 Aligned_cols=167 Identities=31% Similarity=0.514 Sum_probs=137.0
Q ss_pred CCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCC
Q 037651 26 PSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCN 105 (750)
Q Consensus 26 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 105 (750)
.+.++.+++.|.||+|.++. +|..+..+.+|++|++++|+++ .+|.+++.+++|++|+++-|++ ...|..|+.++.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~ 103 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPA 103 (264)
T ss_pred cccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh--hcCccccCCCch
Confidence 45567788888999999874 4556889999999999999988 7888899999999999998874 347888999999
Q ss_pred CCEEeCcCccccc-ccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCC
Q 037651 106 LQTLKLSLNQFRG-EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFL 184 (750)
Q Consensus 106 L~~L~Ls~n~l~~-~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 184 (750)
|+.||+.+|++.. ..|.-|..+. .|+.|+|++|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|
T Consensus 104 levldltynnl~e~~lpgnff~m~------tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l 175 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMT------TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL 175 (264)
T ss_pred hhhhhccccccccccCCcchhHHH------HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH
Confidence 9999999888764 3555555555 7888888998888 78888999999999999998887 678888899999
Q ss_pred CeeecccccCCcccchhccCC
Q 037651 185 EELYLTSNQMNGKFPESFGQL 205 (750)
Q Consensus 185 ~~L~Ls~n~l~~~~~~~l~~l 205 (750)
++|.+.+|+++ .+|+.++++
T Consensus 176 relhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 176 RELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred HHHhcccceee-ecChhhhhh
Confidence 99999999988 667666654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=7.6e-19 Score=152.18 Aligned_cols=165 Identities=32% Similarity=0.492 Sum_probs=149.8
Q ss_pred CCCCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCE
Q 037651 4 KLPSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQL 83 (750)
Q Consensus 4 ~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 83 (750)
.+++++.|.||+|+++..|+ -+..+.+|+.|++++|+|+ .+|.+++.+++|++|+++-|++. +.|..|+.++.|++
T Consensus 31 ~~s~ITrLtLSHNKl~~vpp--nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPP--NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCceeecCC--cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 46778999999999999987 6788999999999999997 67888999999999999999998 89999999999999
Q ss_pred EECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEE
Q 037651 84 LDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYL 163 (750)
Q Consensus 84 L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 163 (750)
|||++|++....+|..|..++.|+.|.+++|.+. ..|..++.++ +|+.|.+.+|.+. .+|..++.+..|++|
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt------~lqil~lrdndll-~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLT------NLQILSLRDNDLL-SLPKEIGDLTRLREL 178 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhc------ceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence 9999999777889999999999999999999997 5666788888 9999999999998 799999999999999
Q ss_pred EccCCcccccCCccccCC
Q 037651 164 ELWYNSFLGSIPPSIGNL 181 (750)
Q Consensus 164 ~L~~n~l~~~~p~~l~~l 181 (750)
.+.+|+++ .+|..++++
T Consensus 179 hiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 179 HIQGNRLT-VLPPELANL 195 (264)
T ss_pred hcccceee-ecChhhhhh
Confidence 99999998 566656544
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.45 E-value=2.8e-13 Score=152.36 Aligned_cols=113 Identities=34% Similarity=0.490 Sum_probs=93.4
Q ss_pred CCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeeccccc
Q 037651 498 SLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLY 577 (750)
Q Consensus 498 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (750)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~-------------------------------------- 460 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-------------------------------------- 460 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh--------------------------------------
Confidence 467888899999888888888999999999999988877664
Q ss_pred ccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCC-CCCCeEECcCCcceecCC
Q 037651 578 LMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSI-RFLSFLNLSFNNLSGEIP 652 (750)
Q Consensus 578 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~l~ls~N~l~g~ip 652 (750)
.++.+++|+.|+|++|+++|.+|+.++++++|+.|+|++|+++|.+|..+..+ .++..+++++|+..|.+|
T Consensus 461 ----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 461 ----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 45667778889999999999999999999999999999999999999887654 466788888887555444
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=3.3e-14 Score=146.11 Aligned_cols=195 Identities=31% Similarity=0.467 Sum_probs=152.0
Q ss_pred CCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEe
Q 037651 399 LKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLD 478 (750)
Q Consensus 399 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 478 (750)
+.--...|++.|++. .+|..++.+..|+.+.+..|.+. .+|..++.+..|++++|+.|+++ .+|..++.|+ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 333456688888887 67888888888888888888887 78888888888888888888888 7777777776 88888
Q ss_pred cCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCcccc
Q 037651 479 LGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQ 558 (750)
Q Consensus 479 L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~ 558 (750)
+++|+++ .+|+.++ ..+.|..||.+.|.+. .+|..++++.+|+.|++..|++..
T Consensus 150 ~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~----------------------- 203 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED----------------------- 203 (722)
T ss_pred EecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-----------------------
Confidence 8888887 7888887 5888888888888887 778888888888888888887762
Q ss_pred CceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCC---C
Q 037651 559 GSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSI---R 635 (750)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~ 635 (750)
+|+++..| .|..||+|+|+++ .||-.|.+|+.|++|-|.+|.+. ..|..+.-. .
T Consensus 204 --------------------lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVH 260 (722)
T KOG0532|consen 204 --------------------LPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVH 260 (722)
T ss_pred --------------------CCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhcccee
Confidence 34455533 3778999999998 78989999999999999999997 466665433 2
Q ss_pred CCCeEECcCCc
Q 037651 636 FLSFLNLSFNN 646 (750)
Q Consensus 636 ~L~~l~ls~N~ 646 (750)
-.++|+..-++
T Consensus 261 IFKyL~~qA~q 271 (722)
T KOG0532|consen 261 IFKYLSTQACQ 271 (722)
T ss_pred eeeeecchhcc
Confidence 34556665554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.32 E-value=3.8e-14 Score=145.66 Aligned_cols=195 Identities=30% Similarity=0.536 Sum_probs=169.1
Q ss_pred CCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEE
Q 037651 375 TPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLV 454 (750)
Q Consensus 375 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 454 (750)
+.--...|++.|++. .+|..++.+..|+.+.++.|.+. .+|..+.++..|++|+|+.|+++ ..|..++.++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 334457889999988 67888888999999999999998 78999999999999999999999 8888888765 99999
Q ss_pred ccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCC
Q 037651 455 LSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLS 534 (750)
Q Consensus 455 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 534 (750)
+++|+++ .+|..+.....|..||.+.|.+. .+|..+.. +.+|+.|.++.|++. .+|++++.| .|..||+|+|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~-l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY-LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh-HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 9999998 88888999999999999999998 89999986 999999999999998 788888855 5999999999997
Q ss_pred CcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCccccc---CCCc
Q 037651 535 GPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQI---GKLE 611 (750)
Q Consensus 535 ~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~ 611 (750)
. +|.+|..|+.|++|-|.+|.+. ..|..+ |...
T Consensus 225 -~------------------------------------------iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVH 260 (722)
T KOG0532|consen 225 -Y------------------------------------------LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVH 260 (722)
T ss_pred -e------------------------------------------cchhhhhhhhheeeeeccCCCC-CChHHHHhcccee
Confidence 3 5556788888999999999998 667665 4455
Q ss_pred cCcEEEccCCc
Q 037651 612 WLESLDLSRNK 622 (750)
Q Consensus 612 ~L~~L~Ls~N~ 622 (750)
-.++|+..-++
T Consensus 261 IFKyL~~qA~q 271 (722)
T KOG0532|consen 261 IFKYLSTQACQ 271 (722)
T ss_pred eeeeecchhcc
Confidence 66788888885
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.29 E-value=3.4e-12 Score=137.61 Aligned_cols=180 Identities=38% Similarity=0.581 Sum_probs=98.0
Q ss_pred CCCCCEEeCCCCccceeCCccccCCC-CCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCE
Q 037651 423 ISSLYILDMTKNNFSGEIPESIGSLL-TIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSI 501 (750)
Q Consensus 423 l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~ 501 (750)
.+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..++.|+.|++++|++. .+|..... .+.|+.
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~-~~~L~~ 190 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN-LSNLNN 190 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhh-hhhhhh
Confidence 345555555555555 4444444442 5666666666655 44444555666666666666665 45544322 556666
Q ss_pred EEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccch
Q 037651 502 LRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPV 581 (750)
Q Consensus 502 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 581 (750)
|++++|++. .+|..+.....|++|++++|+.. . .+.
T Consensus 191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~------------------------------------------~~~ 226 (394)
T COG4886 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-E------------------------------------------LLS 226 (394)
T ss_pred eeccCCccc-cCchhhhhhhhhhhhhhcCCcce-e------------------------------------------cch
Confidence 666666665 55544444455666666666422 1 122
Q ss_pred hhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceecCCC
Q 037651 582 ELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGEIPT 653 (750)
Q Consensus 582 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~ 653 (750)
.+..+..+..+.+++|++. .+|..++.+++++.|++++|.++. ++. +..+..++.+++++|.++...|.
T Consensus 227 ~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchh
Confidence 3444455555556666554 235555666666666666666663 333 55666666666666666655443
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.25 E-value=7.1e-12 Score=141.07 Aligned_cols=110 Identities=38% Similarity=0.564 Sum_probs=93.0
Q ss_pred CCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCC
Q 037651 522 ALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVG 601 (750)
Q Consensus 522 ~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~ 601 (750)
.++.|+|++|.++|.+|. .++.+++|+.|+|++|.++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~------------------------------------------~i~~L~~L~~L~Ls~N~l~g 456 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN------------------------------------------DISKLRHLQSINLSGNSIRG 456 (623)
T ss_pred EEEEEECCCCCccccCCH------------------------------------------HHhCCCCCCEEECCCCcccC
Confidence 478899999999887664 56778889999999999999
Q ss_pred CcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceecCCCCCC--CCCcccccccCCCCCCC
Q 037651 602 KIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGEIPTANQ--FQTSLIRQFMRIPGADE 673 (750)
Q Consensus 602 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~~~~--~~~~~~~~~~~n~~~~~ 673 (750)
.+|..++.+++|+.|||++|+++|.+|+.+..+++|++|++++|+++|.+|..-. ........+.+|+..|.
T Consensus 457 ~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 457 NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 9999999999999999999999999999999999999999999999999996421 11222334677776653
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1.1e-11 Score=133.62 Aligned_cols=182 Identities=36% Similarity=0.528 Sum_probs=130.6
Q ss_pred CCCCCeEECccCccccccCccccCCC-CCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEE
Q 037651 399 LKQLLTLVISNNNLSGGIPQFLKNIS-SLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSL 477 (750)
Q Consensus 399 l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 477 (750)
.+.++.|++.+|.+. .++....... +|+.|++++|++. .+|..+..++.|+.|++++|+++ .+|......+.|+.|
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 456777777777776 4444455553 7778888888777 55566777788888888888887 555555577788888
Q ss_pred ecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccc
Q 037651 478 DLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIY 557 (750)
Q Consensus 478 ~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~ 557 (750)
++++|++. .+|..+.. +..|++|.+++|+.. ..+..+..+.++..+.+++|++...
T Consensus 192 ~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~--------------------- 247 (394)
T COG4886 192 DLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL--------------------- 247 (394)
T ss_pred eccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec---------------------
Confidence 88888887 77776532 556888888888654 5566777888888888888876521
Q ss_pred cCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccc
Q 037651 558 QGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSM 631 (750)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 631 (750)
+..++.++.++.|++++|+++ .++. ++.+.+++.||+++|.++...|...
T Consensus 248 ----------------------~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 248 ----------------------PESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred ----------------------cchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence 224566777888888888887 4444 8888888888888888886665543
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.3e-11 Score=123.55 Aligned_cols=207 Identities=24% Similarity=0.244 Sum_probs=128.3
Q ss_pred CCCCCCcEEECCCCCCCCCcc-ccccCCCCCCEEeCcCCCCcccCC--cccCCCCCCCEEECcCCCCcccccccccCCCC
Q 037651 28 LNFTSLQVLDLSNNGFNSTIP-HWLFNITNLLSLDLNSNDLQGDIP--DGFASLNSLQLLDLSGNSFLEGQLSRNLGTLC 104 (750)
Q Consensus 28 ~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~ 104 (750)
.++++|+.+.|.++....... +....|++++.||||.|-+....+ .-...+++|+.|+++.|++....-...-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456778888888777642211 356677888888888887664322 33457788888888888743222112223567
Q ss_pred CCCEEeCcCcccccccchh-hhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCC-ccccCCC
Q 037651 105 NLQTLKLSLNQFRGEVSDF-IDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIP-PSIGNLT 182 (750)
Q Consensus 105 ~L~~L~Ls~n~l~~~~~~~-l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~ 182 (750)
+|+.|.++.|.++...-.. +..+ |+|+.|+|..|.....-......+..|+.|||++|.+..... ...+.++
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~f------Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTF------PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhC------CcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence 7888888888877432221 2223 488888888885332333344556778888888887764321 2356778
Q ss_pred CCCeeecccccCCccc-chh-----ccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEeccc
Q 037651 183 FLEELYLTSNQMNGKF-PES-----FGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIK 240 (750)
Q Consensus 183 ~L~~L~Ls~n~l~~~~-~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~ 240 (750)
.|+.|+++.+.+.+.- |+. ...+++|++|++..|++...-....+..+++|+.|.+..
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 8888888888876532 222 245678888888888875543333455555566555444
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2e-11 Score=122.15 Aligned_cols=210 Identities=24% Similarity=0.234 Sum_probs=156.5
Q ss_pred CCCCCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCcc--ccccCCCCCCEEeCcCCCCcccCCc-ccCCCC
Q 037651 3 SKLPSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIP--HWLFNITNLLSLDLNSNDLQGDIPD-GFASLN 79 (750)
Q Consensus 3 ~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~ 79 (750)
+++..|++..|.++.....+.......|++++.|||+.|-+...-+ .....+++|+.|+|+.|++...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 3567889999999888877643355678999999999998875433 3456789999999999988632221 223678
Q ss_pred CCCEEECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCC--ccccCC
Q 037651 80 SLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLP--ISLGYL 157 (750)
Q Consensus 80 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~--~~l~~l 157 (750)
+|+.|.|+.|.+....+......+++|+.|+|..|............+. .|++|||++|.+.. .+ ...+.+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~------~L~~LdLs~N~li~-~~~~~~~~~l 270 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ------TLQELDLSNNNLID-FDQGYKVGTL 270 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh------HHhhccccCCcccc-cccccccccc
Confidence 9999999999955444555567889999999999964444333444444 89999999998873 33 457889
Q ss_pred CCCcEEEccCCccccc-CCcc-----ccCCCCCCeeecccccCCcccc--hhccCCCCCCEEEcccCcCcc
Q 037651 158 KNLRYLELWYNSFLGS-IPPS-----IGNLTFLEELYLTSNQMNGKFP--ESFGQLSAIRVLELSDNQWEG 220 (750)
Q Consensus 158 ~~L~~L~L~~n~l~~~-~p~~-----l~~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~ 220 (750)
+.|+.|+++.|.+... .|+. ....++|++|+++.|++. ..+ ..+..+++|+.|.+..|.++.
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence 9999999999998864 3333 356789999999999996 222 245567788888888888764
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=7.1e-11 Score=112.28 Aligned_cols=134 Identities=29% Similarity=0.316 Sum_probs=98.2
Q ss_pred ccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccC
Q 037651 468 LKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAM 547 (750)
Q Consensus 468 ~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l 547 (750)
......|+++||++|.|+ .+.+..-- .|.++.|++|+|.+. .+. .+..+++|+.||||+|.++.. -.
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL-~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~-~G-------- 346 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKL-APKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAEC-VG-------- 346 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhh-ccceeEEecccccee-eeh-hhhhcccceEeecccchhHhh-hh--------
Confidence 334456888888888887 67766654 788888888888887 443 377888899999999887621 10
Q ss_pred ccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCC
Q 037651 548 KVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSI 627 (750)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 627 (750)
.-..+-+.+.|+|+.|.+. .-..++.+-+|+.||+++|+|...-
T Consensus 347 ----------------------------------wh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 347 ----------------------------------WHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELD 390 (490)
T ss_pred ----------------------------------hHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHH
Confidence 1234556778889988875 2356788888999999999886321
Q ss_pred -CccccCCCCCCeEECcCCcceec
Q 037651 628 -PPSMVSIRFLSFLNLSFNNLSGE 650 (750)
Q Consensus 628 -p~~l~~l~~L~~l~ls~N~l~g~ 650 (750)
-..+++++.|+.+-+-+|++.+.
T Consensus 391 eV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 391 EVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred HhcccccccHHHHHhhcCCCcccc
Confidence 23577888999999999998875
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=2.2e-10 Score=105.26 Aligned_cols=128 Identities=28% Similarity=0.268 Sum_probs=46.9
Q ss_pred CCCCCCCcEEECCCCCCCCCcccccc-CCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCccccccccc-CCCC
Q 037651 27 SLNFTSLQVLDLSNNGFNSTIPHWLF-NITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNL-GTLC 104 (750)
Q Consensus 27 ~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l-~~l~ 104 (750)
..+..++++|+|++|.|+.+ +.++ .+.+|+.|+|++|.|+.. + .+..+++|++|++++|++.+ +...+ ..++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISS--ISEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S---CHHHHHH-T
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCc--cccchHHhCC
Confidence 34556788888888888743 3455 577888888888888843 2 47788888888888888433 33334 3578
Q ss_pred CCCEEeCcCcccccccc-hhhhccccccCCCCccEEEccCCcCcccCCc----cccCCCCCcEEEccC
Q 037651 105 NLQTLKLSLNQFRGEVS-DFIDGLSECINSSSLARLELGYNQLTGNLPI----SLGYLKNLRYLELWY 167 (750)
Q Consensus 105 ~L~~L~Ls~n~l~~~~~-~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~ 167 (750)
+|++|++++|++..... ..++. +++|+.|+|.+|.++.. +. .+..+|+|+.||-..
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~------l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSS------LPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-------TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEE
T ss_pred cCCEEECcCCcCCChHHhHHHHc------CCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEE
Confidence 88888888888875322 22333 34888999998888732 32 466788999987643
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=4e-10 Score=103.49 Aligned_cols=109 Identities=29% Similarity=0.441 Sum_probs=35.6
Q ss_pred cCCCCCCEEeCCCCccceeCCcccc-CCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCC
Q 037651 421 KNISSLYILDMTKNNFSGEIPESIG-SLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSL 499 (750)
Q Consensus 421 ~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L 499 (750)
.++..+++|+|++|+|+ .+ +.+. .+.+|+.|++++|.++. ++ .+..++.|++|++++|+++ .++..+...+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 34445667777777766 22 2343 35677777777777763 22 3666777778888888777 5655544347788
Q ss_pred CEEEccCccceeec-CccccCCCCCcEEEcccCcCC
Q 037651 500 SILRLRSNHFNGTI-PSELCKLSALHILDLSHNNLS 534 (750)
Q Consensus 500 ~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~ 534 (750)
++|++++|++...- -..+..+++|+.|+|.+|+++
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 88888888775321 134667788888888888776
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=1e-10 Score=111.16 Aligned_cols=101 Identities=29% Similarity=0.301 Sum_probs=45.8
Q ss_pred CccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcc
Q 037651 135 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS 214 (750)
Q Consensus 135 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 214 (750)
.++.|++++|.+.. + ..+..+++|+.|||++|.++ .+.+|-.++-++++|.|+.|.+... +.++++-+|..||++
T Consensus 308 kir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 308 KLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLS 382 (490)
T ss_pred ceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheecccc
Confidence 45555555555441 1 12444555555555555444 3333444444555555555554421 234444455555555
Q ss_pred cCcCccccChhhhcCCCCCCEEeccc
Q 037651 215 DNQWEGFITEAHLRNLTSLEELSLIK 240 (750)
Q Consensus 215 ~n~l~~~~~~~~l~~l~~L~~L~l~~ 240 (750)
+|++...-....++++|.|+.+.+.+
T Consensus 383 ~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 383 SNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred ccchhhHHHhcccccccHHHHHhhcC
Confidence 55544322222344444444444444
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.97 E-value=5.9e-11 Score=115.78 Aligned_cols=138 Identities=27% Similarity=0.257 Sum_probs=81.9
Q ss_pred CCCCCEEecCCCcccccCCh----hhhhcCCCCCEEEccCccceee----cCccccCCCCCcEEEcccCcCCCcCCcccc
Q 037651 471 CSLMDSLDLGENQLSGNIPA----WIGESMPSLSILRLRSNHFNGT----IPSELCKLSALHILDLSHNNLSGPIPHCVG 542 (750)
Q Consensus 471 l~~L~~L~L~~n~~~~~~p~----~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 542 (750)
-+.|++++.+.|++. ..+. ..++..+.|+.+.++.|.+... +...+..+++|++|||..|.++..--.
T Consensus 156 ~~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~--- 231 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV--- 231 (382)
T ss_pred CcceEEEEeeccccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH---
Confidence 456777777777664 3332 1233356777777777766311 123456777777777777776632111
Q ss_pred ccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCccccc-----CCCccCcEEE
Q 037651 543 DFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQI-----GKLEWLESLD 617 (750)
Q Consensus 543 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~ 617 (750)
.+.+.+..+++|++|+++.|.+...-..+| ...++|+.|+
T Consensus 232 -----------------------------------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~ 276 (382)
T KOG1909|consen 232 -----------------------------------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLE 276 (382)
T ss_pred -----------------------------------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceec
Confidence 122345556677777777777764322222 2357788888
Q ss_pred ccCCccCcC----CCccccCCCCCCeEECcCCcc
Q 037651 618 LSRNKLSGS----IPPSMVSIRFLSFLNLSFNNL 647 (750)
Q Consensus 618 Ls~N~l~~~----~p~~l~~l~~L~~l~ls~N~l 647 (750)
+.+|.++.. +-..+...+.|..|++++|.+
T Consensus 277 l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 277 LAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 888877622 223345567788888888887
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.88 E-value=4.9e-11 Score=116.30 Aligned_cols=183 Identities=22% Similarity=0.305 Sum_probs=123.1
Q ss_pred CCcEEEeecccccCCCCcc---hhccCCCCCEEecCCCcCccc-------------CCcCCcCCCCCCeEECccCccccc
Q 037651 352 NLTKLYLRDNLFSGPIPND---LGQKTPFLTDLDISFNSLNGS-------------IPQSVGNLKQLLTLVISNNNLSGG 415 (750)
Q Consensus 352 ~L~~L~l~~n~l~~~i~~~---~~~~~~~L~~L~ls~n~l~~~-------------~~~~~~~l~~L~~L~L~~n~l~~~ 415 (750)
.|++++||+|.+.-..+.. +...+..|++|.|.+|.+... .......-+.|+++...+|++...
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 4455555555443222221 122355666666666655411 111234467899999999988642
Q ss_pred ----cCccccCCCCCCEEeCCCCccceeC----CccccCCCCCCEEEccCCcCcCC----CCccccCCCCCCEEecCCCc
Q 037651 416 ----IPQFLKNISSLYILDMTKNNFSGEI----PESIGSLLTIRFLVLSNNHLSGE----IPPSLKNCSLMDSLDLGENQ 483 (750)
Q Consensus 416 ----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~ 483 (750)
+...|..++.|+.+.++.|.|.... ...+..+++|+.|||.+|-++.. +...++.+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 3345777889999999999876322 24567899999999999988743 34567778899999999998
Q ss_pred ccccCCh----hhhhcCCCCCEEEccCccceee----cCccccCCCCCcEEEcccCcCC
Q 037651 484 LSGNIPA----WIGESMPSLSILRLRSNHFNGT----IPSELCKLSALHILDLSHNNLS 534 (750)
Q Consensus 484 ~~~~~p~----~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~ 534 (750)
+...-.. .+....|+|++|.+.+|.++.. +...+...+.|..|+|++|++.
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 8743332 3334578999999999988632 2334566899999999999994
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=3.7e-10 Score=121.80 Aligned_cols=197 Identities=32% Similarity=0.405 Sum_probs=113.8
Q ss_pred CCCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEE
Q 037651 5 LPSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLL 84 (750)
Q Consensus 5 l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 84 (750)
+..++.+.+..+.+..+. ..+..+++|..|++.+|.|..+.. .+..+++|++|++++|.|+.+. .+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~~~--~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKIL--NHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhhhh--cccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhh
Confidence 344555556666555522 234556777777777777764322 2566777777777777776442 25566667777
Q ss_pred ECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEE
Q 037651 85 DLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLE 164 (750)
Q Consensus 85 ~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 164 (750)
++++|.+.. ...+..++.|+.+++++|++....+.....+. +++.+++.+|.+.. ...+..+..+..++
T Consensus 146 ~l~~N~i~~---~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~------~l~~l~l~~n~i~~--i~~~~~~~~l~~~~ 214 (414)
T KOG0531|consen 146 NLSGNLISD---ISGLESLKSLKLLDLSYNRIVDIENDELSELI------SLEELDLGGNSIRE--IEGLDLLKKLVLLS 214 (414)
T ss_pred eeccCcchh---ccCCccchhhhcccCCcchhhhhhhhhhhhcc------chHHHhccCCchhc--ccchHHHHHHHHhh
Confidence 777776322 23455567777777777776654441022232 67777777776652 22333444555556
Q ss_pred ccCCcccccCCccccCCCC--CCeeecccccCCcccchhccCCCCCCEEEcccCcCcc
Q 037651 165 LWYNSFLGSIPPSIGNLTF--LEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG 220 (750)
Q Consensus 165 L~~n~l~~~~p~~l~~l~~--L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 220 (750)
+..|.++..-+ +..+.. |+++++++|.+. ..+..+..+..+..|++.+|++..
T Consensus 215 l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 215 LLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccc
Confidence 66666653322 222333 677777777776 233455566677777777776654
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=2e-09 Score=81.11 Aligned_cols=61 Identities=39% Similarity=0.540 Sum_probs=56.7
Q ss_pred ccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcc
Q 037651 587 LHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNL 647 (750)
Q Consensus 587 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 647 (750)
++|++|++++|+++...++.|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999977778999999999999999999988888999999999999999975
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.81 E-value=4.3e-10 Score=121.30 Aligned_cols=150 Identities=25% Similarity=0.294 Sum_probs=75.9
Q ss_pred CCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEc
Q 037651 376 PFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVL 455 (750)
Q Consensus 376 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 455 (750)
..++.+++..|.+.. +-..++.+.+|+.|++.+|.+... ...+..+++|++|++++|.|+...+ +..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence 344444444444442 112234455666666666666533 2224556666666666666653222 344455666666
Q ss_pred cCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCC
Q 037651 456 SNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLS 534 (750)
Q Consensus 456 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 534 (750)
++|.++.. ..+..++.|+.+++++|++. .+.......+.+++.+++.+|.+... ..+..+..+..+++..|.++
T Consensus 148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 148 SGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred ccCcchhc--cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence 66666522 22444666666666666665 33331012256666666666666421 23334444444566666554
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.80 E-value=7.9e-09 Score=118.97 Aligned_cols=127 Identities=31% Similarity=0.308 Sum_probs=58.9
Q ss_pred CCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCC--CcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCE
Q 037651 31 TSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSND--LQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQT 108 (750)
Q Consensus 31 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 108 (750)
...|.+.+-+|.+.. ++... .+++|++|-+..|. +....++.|..++.|++|||++|. .-+.+|..++.+-+||+
T Consensus 523 ~~~rr~s~~~~~~~~-~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH-IAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhh-ccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhc
Confidence 344455554444432 12111 22245555555553 332223334455555555555554 33445555555555555
Q ss_pred EeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccC
Q 037651 109 LKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWY 167 (750)
Q Consensus 109 L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 167 (750)
|+++++.+. ..|..++.+. .|.+|++..+.-...+|.....+++|++|.+..
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk------~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLK------KLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccCCCcc-ccchHHHHHH------hhheeccccccccccccchhhhcccccEEEeec
Confidence 555555554 3444444444 555555555443333344444455555555544
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=9.6e-09 Score=118.30 Aligned_cols=277 Identities=23% Similarity=0.225 Sum_probs=166.7
Q ss_pred CCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCC--CCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCE
Q 037651 6 PSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNG--FNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQL 83 (750)
Q Consensus 6 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 83 (750)
..++.+.+.++.+..++. . ...+.|++|-+..|. +.....+.|..++.|++|||++|.--+.+|..++.+-+||+
T Consensus 523 ~~~rr~s~~~~~~~~~~~-~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG-S--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhccC-C--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 356777777777776654 1 234579999999886 55555666888999999999998777789999999999999
Q ss_pred EECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCc--ccCCccccCCCCCc
Q 037651 84 LDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLT--GNLPISLGYLKNLR 161 (750)
Q Consensus 84 L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~--~~~~~~l~~l~~L~ 161 (750)
|+++++.+. .+|..++++..|.+||+..+.-...++.....+. +|++|.+...... ...-..+.++.+|+
T Consensus 600 L~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~------~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 600 LDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ------SLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred ccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcc------cccEEEeeccccccchhhHHhhhcccchh
Confidence 999999853 5899999999999999998876656666666666 8999998776522 22223345555666
Q ss_pred EEEccCCcccccCCccccCCCCCC----eeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEe
Q 037651 162 YLELWYNSFLGSIPPSIGNLTFLE----ELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELS 237 (750)
Q Consensus 162 ~L~L~~n~l~~~~p~~l~~l~~L~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 237 (750)
.+....... .+-..+..++.|. .+.+.++... ..+..++.+.+|+.|.+.++.+..... ........++
T Consensus 672 ~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~----~~~~~~~~~~ 744 (889)
T KOG4658|consen 672 NLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVI----EWEESLIVLL 744 (889)
T ss_pred hheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhc----ccccccchhh
Confidence 555543332 1111122233332 2222222322 334456677777777777776643211 1111111110
Q ss_pred cccCCCCCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCC
Q 037651 238 LIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGN 317 (750)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n 317 (750)
..+++..+.+..|. ....+.|..-.++|+.|.+..|.....+.+..... ..++.+.+..+
T Consensus 745 ------------------~f~~l~~~~~~~~~-~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~-~~l~~~i~~f~ 804 (889)
T KOG4658|consen 745 ------------------CFPNLSKVSILNCH-MLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKAL-LELKELILPFN 804 (889)
T ss_pred ------------------hHHHHHHHHhhccc-cccccchhhccCcccEEEEecccccccCCCHHHHh-hhcccEEeccc
Confidence 00011122222222 12445555666788888888777665554443332 23444444444
Q ss_pred cCC
Q 037651 318 HLS 320 (750)
Q Consensus 318 ~l~ 320 (750)
.+.
T Consensus 805 ~~~ 807 (889)
T KOG4658|consen 805 KLE 807 (889)
T ss_pred ccc
Confidence 444
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=1.6e-08 Score=76.16 Aligned_cols=59 Identities=36% Similarity=0.410 Sum_probs=31.7
Q ss_pred CccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeeccccc
Q 037651 135 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQ 193 (750)
Q Consensus 135 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 193 (750)
+|++|++++|+++...+..|.++++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554333455555555555555555554445555555555555555554
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=3.1e-09 Score=112.97 Aligned_cols=156 Identities=26% Similarity=0.274 Sum_probs=108.6
Q ss_pred CcchhccCCCCCEEecCCCcCcccCCcCCcC-CCCCCeEECccCccc----------cccCccccCCCCCCEEeCCCCcc
Q 037651 368 PNDLGQKTPFLTDLDISFNSLNGSIPQSVGN-LKQLLTLVISNNNLS----------GGIPQFLKNISSLYILDMTKNNF 436 (750)
Q Consensus 368 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~----------~~~~~~l~~l~~L~~L~Ls~n~l 436 (750)
|-.++. +.+|+.|.+.+|++.. .. .+.. -..|++|.- .|.+. |.+... ..+..|...+.+.|.+
T Consensus 102 pi~ifp-F~sLr~LElrg~~L~~-~~-GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns-~~Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFP-FRSLRVLELRGCDLST-AK-GLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNS-PVWNKLATASFSYNRL 176 (1096)
T ss_pred Cceecc-ccceeeEEecCcchhh-hh-hhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccc-hhhhhHhhhhcchhhH
Confidence 455555 7788888888888763 11 1111 123444432 22222 111111 1134688889999998
Q ss_pred ceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCcc
Q 037651 437 SGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSE 516 (750)
Q Consensus 437 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 516 (750)
. ....++.-++.|+.|+|++|+++.. +.+..|+.|++|||++|.+. .+|..-..++. |..|.+++|-++.. .+
T Consensus 177 ~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~g 249 (1096)
T KOG1859|consen 177 V-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RG 249 (1096)
T ss_pred H-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hh
Confidence 8 6777788889999999999999844 37889999999999999998 77765444344 99999999998733 36
Q ss_pred ccCCCCCcEEEcccCcCCC
Q 037651 517 LCKLSALHILDLSHNNLSG 535 (750)
Q Consensus 517 l~~l~~L~~L~Ls~n~l~~ 535 (750)
+.++.+|+.||+++|-+.+
T Consensus 250 ie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred HHhhhhhhccchhHhhhhc
Confidence 8899999999999997764
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.42 E-value=2.3e-09 Score=113.91 Aligned_cols=179 Identities=28% Similarity=0.314 Sum_probs=103.8
Q ss_pred CCCCCCCCCcEEECCCCCCCCCccccccCC-CCCCEEeCcCCC--CcccCCcc---cC---CCCCCCEEECcCCCCcccc
Q 037651 25 FPSLNFTSLQVLDLSNNGFNSTIPHWLFNI-TNLLSLDLNSND--LQGDIPDG---FA---SLNSLQLLDLSGNSFLEGQ 95 (750)
Q Consensus 25 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~--i~~~~~~~---~~---~l~~L~~L~Ls~n~~~~~~ 95 (750)
..+..+++||+|.|.++.+.. ...+..+ ..|++|-.++.- +...+... |+ ....|.+.+.++|.+. .
T Consensus 103 i~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~--~ 178 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV--L 178 (1096)
T ss_pred ceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH--h
Confidence 356677889999999888753 1112222 134444332210 01111111 11 1235666777777632 2
Q ss_pred cccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCc-cccCCCCCcEEEccCCcccccC
Q 037651 96 LSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPI-SLGYLKNLRYLELWYNSFLGSI 174 (750)
Q Consensus 96 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~ 174 (750)
+-.++.-++.|+.|||++|+++.. +.+..++ +|++|||++|.+. .+|. ....++ |+.|.+++|.++..
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~------~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL- 247 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLP------KLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL- 247 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh--HHHHhcc------cccccccccchhc-cccccchhhhh-heeeeecccHHHhh-
Confidence 445566677777778887777643 2444444 7777888887777 3332 333444 77778888777633
Q ss_pred CccccCCCCCCeeecccccCCccc-chhccCCCCCCEEEcccCcCc
Q 037651 175 PPSIGNLTFLEELYLTSNQMNGKF-PESFGQLSAIRVLELSDNQWE 219 (750)
Q Consensus 175 p~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~ 219 (750)
..+.++.+|+.||+++|-+.+.- -..+..+..|+.|.|.+|++-
T Consensus 248 -~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 -RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 34677777888888887776431 122455667777777777663
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1e-08 Score=97.93 Aligned_cols=155 Identities=18% Similarity=0.101 Sum_probs=77.5
Q ss_pred CccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccC--CccccCCCCCCeeecccccCCcccchh-ccC-CCCCCE
Q 037651 135 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSI--PPSIGNLTFLEELYLTSNQMNGKFPES-FGQ-LSAIRV 210 (750)
Q Consensus 135 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~-l~~L~~ 210 (750)
+|+.|.|.++++...+...+.+-.+|+.|+++.+.-.... .--+.+++.|++|+++.|.+....... +.. -++|+.
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~ 290 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ 290 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence 5556666666655555555555566666666554311110 112345566666666666554322111 111 134555
Q ss_pred EEcccCcCc--cccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEeccccCCCCCChh---hccCCccc
Q 037651 211 LELSDNQWE--GFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTW---LRNQTELT 285 (750)
Q Consensus 211 L~L~~n~l~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~---l~~~~~L~ 285 (750)
|++++..-. ..--..-.+.+++|.+||+++|. .+.......+.....|++|.++.|. +.+|.. +...|.|.
T Consensus 291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v--~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~ 366 (419)
T KOG2120|consen 291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV--MLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLV 366 (419)
T ss_pred hhhhhhHhhhhhhHHHHHHHhCCceeeecccccc--ccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceE
Confidence 666554211 00001123456666666666632 2333344444555566666666664 344444 35668888
Q ss_pred EEEcCCCC
Q 037651 286 TLVLNGAS 293 (750)
Q Consensus 286 ~L~L~~n~ 293 (750)
+|+..++-
T Consensus 367 yLdv~g~v 374 (419)
T KOG2120|consen 367 YLDVFGCV 374 (419)
T ss_pred EEEecccc
Confidence 88887763
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.32 E-value=3.9e-08 Score=83.06 Aligned_cols=74 Identities=27% Similarity=0.306 Sum_probs=41.0
Q ss_pred cchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceecCCCC
Q 037651 579 MPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGEIPTA 654 (750)
Q Consensus 579 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~~ 654 (750)
+|+++..+++|+.|+++.|.+. ..|+.+..|.++-.||.-+|.+. .||..+-.-+.....++.++++.+..|.+
T Consensus 92 vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 92 VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 3445566666666666666665 45555656666666666666665 44444332233333455556666555543
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.22 E-value=1e-07 Score=80.61 Aligned_cols=61 Identities=26% Similarity=0.471 Sum_probs=29.6
Q ss_pred CCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCC
Q 037651 472 SLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLS 534 (750)
Q Consensus 472 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 534 (750)
..|+..+|++|.+. .+|..+....+.++.|++++|.+. .+|.++..++.|+.|+++.|.+.
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence 33444455555544 444444333444555555555554 44444555555555555555444
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3e-08 Score=94.76 Aligned_cols=179 Identities=19% Similarity=0.173 Sum_probs=121.9
Q ss_pred CCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCc-cccc-cCccccCCCCCCE
Q 037651 351 SNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNN-LSGG-IPQFLKNISSLYI 428 (750)
Q Consensus 351 ~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~ 428 (750)
+.++.+|+++..++..--..+...|.+|+.|.+.++++...+...+..-.+|+.|+++.+. ++.. ..-.+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3588888888877644444555668888888888888887777777788889999998874 3321 1234678899999
Q ss_pred EeCCCCccceeCCccc-c-CCCCCCEEEccCCcCc---CCCCccccCCCCCCEEecCCCccc-ccCChhhhhcCCCCCEE
Q 037651 429 LDMTKNNFSGEIPESI-G-SLLTIRFLVLSNNHLS---GEIPPSLKNCSLMDSLDLGENQLS-GNIPAWIGESMPSLSIL 502 (750)
Q Consensus 429 L~Ls~n~l~~~~~~~~-~-~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~~l~~L~~L 502 (750)
|+++.|.+........ . --++|+.|+++|+.-. ..+..-...|++|..|||++|... ...-..+++ ++.|++|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQHL 343 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cchheee
Confidence 9999988764433222 1 1368888888887421 122223457899999999987643 222223343 8889999
Q ss_pred EccCccceeecCc---cccCCCCCcEEEcccCc
Q 037651 503 RLRSNHFNGTIPS---ELCKLSALHILDLSHNN 532 (750)
Q Consensus 503 ~Ls~n~l~~~~p~---~l~~l~~L~~L~Ls~n~ 532 (750)
.++.|-. .+|. .+...++|.+||+-++-
T Consensus 344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 9888854 4554 45677889999887763
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=1.9e-07 Score=89.35 Aligned_cols=82 Identities=22% Similarity=0.245 Sum_probs=33.2
Q ss_pred CCcEEEccCCcccc--cCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEE
Q 037651 159 NLRYLELWYNSFLG--SIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEEL 236 (750)
Q Consensus 159 ~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 236 (750)
.++.+||.+|.++. .+..-+.++|.|+.|+++.|.+...+...-....+|+.|-|.+..+........+..+|.+++|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 34444444444432 1222234445555555555554433221112334445554444443322222234444444444
Q ss_pred eccc
Q 037651 237 SLIK 240 (750)
Q Consensus 237 ~l~~ 240 (750)
.++.
T Consensus 152 HmS~ 155 (418)
T KOG2982|consen 152 HMSD 155 (418)
T ss_pred hhcc
Confidence 4444
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=5.9e-07 Score=86.11 Aligned_cols=203 Identities=18% Similarity=0.187 Sum_probs=105.5
Q ss_pred CCcEEECCCCCCCCCcc-ccc-cCCCCCCEEeCcCCCCcc--cCCcccCCCCCCCEEECcCCCCccccccccc-CCCCCC
Q 037651 32 SLQVLDLSNNGFNSTIP-HWL-FNITNLLSLDLNSNDLQG--DIPDGFASLNSLQLLDLSGNSFLEGQLSRNL-GTLCNL 106 (750)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~-~~~-~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l-~~l~~L 106 (750)
-+..|.+.++.|...-. ..| ..+++++.+||.+|.|+. .+..-+.+++.|++|+++.|. +...+ +.+ ..+.+|
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I-~~lp~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDI-KSLPLPLKNL 123 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCcc-ccCcccccce
Confidence 34455565665543211 112 245677888888887763 223345677888888888887 33221 112 345677
Q ss_pred CEEeCcCcccccccch-hhhccccccCCCCccEEEccCCcCcccCC--ccccC-CCCCcEEEccCCcccc--cCCccccC
Q 037651 107 QTLKLSLNQFRGEVSD-FIDGLSECINSSSLARLELGYNQLTGNLP--ISLGY-LKNLRYLELWYNSFLG--SIPPSIGN 180 (750)
Q Consensus 107 ~~L~Ls~n~l~~~~~~-~l~~l~~~~~~~~L~~L~L~~n~l~~~~~--~~l~~-l~~L~~L~L~~n~l~~--~~p~~l~~ 180 (750)
++|-|.+..+.-...+ .+..+| .+++|.++.|.+....- ..... -+.+++|....|-... ..-..-.-
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP------~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~ 197 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLP------KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI 197 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcch------hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh
Confidence 7777777766533222 223333 67777777774331110 01111 1134444444332110 00000112
Q ss_pred CCCCCeeecccccCCccc-chhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCC
Q 037651 181 LTFLEELYLTSNQMNGKF-PESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTS 242 (750)
Q Consensus 181 l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~ 242 (750)
.+++..+.+..|.+...- ......++.+-.|+|+.|++.......++..+++|..|.+++++
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 345566666666554321 22344566666777777777666666667777777777776643
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=2e-05 Score=81.61 Aligned_cols=57 Identities=11% Similarity=0.116 Sum_probs=33.2
Q ss_pred ccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCC
Q 037651 420 LKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGEN 482 (750)
Q Consensus 420 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 482 (750)
+..+.+++.|++++|.++ .+|. -.++|+.|.+++|.-...+|..+ .++|+.|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 444567777777777666 4552 22457777776644333455433 245666666666
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=8.7e-06 Score=55.90 Aligned_cols=38 Identities=39% Similarity=0.623 Sum_probs=26.7
Q ss_pred ccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCc
Q 037651 587 LHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSG 625 (750)
Q Consensus 587 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 625 (750)
++|++|++++|+++ .+|..+++|++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 35777888888887 466667788888888888887773
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=6.3e-05 Score=78.03 Aligned_cols=131 Identities=20% Similarity=0.282 Sum_probs=66.7
Q ss_pred CCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccC-ccccccCccccCCCCCCEE
Q 037651 351 SNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNN-NLSGGIPQFLKNISSLYIL 429 (750)
Q Consensus 351 ~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L 429 (750)
..++.|++++|.++ .+|. + -++|++|.+++|.-...+|+.+ .++|+.|++++| .+. .+| .+|+.|
T Consensus 52 ~~l~~L~Is~c~L~-sLP~-L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV-L---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSL 117 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC-C---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceE
Confidence 45666666666665 5552 1 2346666666655444555443 346777777766 333 333 245566
Q ss_pred eCCCCccc--eeCCccccCCCCCCEEEccCCcCc--CCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEcc
Q 037651 430 DMTKNNFS--GEIPESIGSLLTIRFLVLSNNHLS--GEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLR 505 (750)
Q Consensus 430 ~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls 505 (750)
+++.+... +.+| ++|+.|.+.+++.. ..+|.. -.++|++|++++|... .+|..+ ..+|+.|+++
T Consensus 118 ~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~L---P~SLk~L~ls 185 (426)
T PRK15386 118 EIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKL---PESLQSITLH 185 (426)
T ss_pred EeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcccc---cccCcEEEec
Confidence 66554432 1222 34555555432211 011110 1146777777777654 345433 3467777776
Q ss_pred Cc
Q 037651 506 SN 507 (750)
Q Consensus 506 ~n 507 (750)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 65
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.82 E-value=8.3e-06 Score=77.40 Aligned_cols=209 Identities=20% Similarity=0.158 Sum_probs=131.1
Q ss_pred CCCCcEEECCCCCCCCC----ccccccCCCCCCEEeCcCCCCc---ccCC-------cccCCCCCCCEEECcCCCCcccc
Q 037651 30 FTSLQVLDLSNNGFNST----IPHWLFNITNLLSLDLNSNDLQ---GDIP-------DGFASLNSLQLLDLSGNSFLEGQ 95 (750)
Q Consensus 30 l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~---~~~~-------~~~~~l~~L~~L~Ls~n~~~~~~ 95 (750)
+..++.++||+|.|... +...+.+-++|+..+++.--.. ..++ .++-+|++|+..+||.|. +...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA-fg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA-FGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc-cCcc
Confidence 56788899999988653 3344556678888888764221 1222 346688999999999998 4444
Q ss_pred ccc----ccCCCCCCCEEeCcCcccccccchhh-------hccccccCCCCccEEEccCCcCcccCCc-----cccCCCC
Q 037651 96 LSR----NLGTLCNLQTLKLSLNQFRGEVSDFI-------DGLSECINSSSLARLELGYNQLTGNLPI-----SLGYLKN 159 (750)
Q Consensus 96 ~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~l-------~~l~~~~~~~~L~~L~L~~n~l~~~~~~-----~l~~l~~ 159 (750)
.|. .+++-+.|++|.+++|.+.-.-..-+ +..+.-.+.|.|++.....|++.. .+. .+..-.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcC
Confidence 443 35677889999999987653222222 222233455689999999998862 232 2333357
Q ss_pred CcEEEccCCcccccCCc-----cccCCCCCCeeecccccCCcccch----hccCCCCCCEEEcccCcCccccChhhhc--
Q 037651 160 LRYLELWYNSFLGSIPP-----SIGNLTFLEELYLTSNQMNGKFPE----SFGQLSAIRVLELSDNQWEGFITEAHLR-- 228 (750)
Q Consensus 160 L~~L~L~~n~l~~~~p~-----~l~~l~~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~l~-- 228 (750)
|+++.+..|.|.-..-. .+..+.+|+.||+.+|.++..... ++..-+.|+.|.+.+|-++..-....+.
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 88888888876532111 234678888999988888743332 3444566888888888775433332332
Q ss_pred ---CCCCCCEEeccc
Q 037651 229 ---NLTSLEELSLIK 240 (750)
Q Consensus 229 ---~l~~L~~L~l~~ 240 (750)
..++|..|...+
T Consensus 267 ~e~~~p~l~~L~~~Y 281 (388)
T COG5238 267 NEKFVPNLMPLPGDY 281 (388)
T ss_pred hhhcCCCccccccch
Confidence 234555555555
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.70 E-value=1.2e-05 Score=76.40 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=21.7
Q ss_pred CCCccEEEccCCcCcccCCc----cccCCCCCcEEEccCCcc
Q 037651 133 SSSLARLELGYNQLTGNLPI----SLGYLKNLRYLELWYNSF 170 (750)
Q Consensus 133 ~~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l 170 (750)
||+|+..+||+|.+....|. .++.-..|++|.+++|.+
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 34666666666655543333 234556677777777654
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=7.1e-05 Score=68.31 Aligned_cols=105 Identities=27% Similarity=0.244 Sum_probs=59.4
Q ss_pred CCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCC
Q 037651 56 NLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSS 135 (750)
Q Consensus 56 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~ 135 (750)
+...+||++|.+.. + ..|.+++.|.+|.|.+|+ ++..-|.--..+++|+.|.|.+|.+.. ++.+..+..+++
T Consensus 43 ~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~-----l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQE-----LGDLDPLASCPK 114 (233)
T ss_pred ccceecccccchhh-c-ccCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhh-----hhhcchhccCCc
Confidence 45556666666552 1 235566666666666666 333333333445566666666666642 222333334457
Q ss_pred ccEEEccCCcCcccC---CccccCCCCCcEEEccCC
Q 037651 136 LARLELGYNQLTGNL---PISLGYLKNLRYLELWYN 168 (750)
Q Consensus 136 L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~~n 168 (750)
|++|.+-+|.++..- --.+..+++|++||...=
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 777777777665211 124667888888888764
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=3.7e-05 Score=52.78 Aligned_cols=35 Identities=37% Similarity=0.681 Sum_probs=14.2
Q ss_pred CCEEEccCCcCcCCCCccccCCCCCCEEecCCCccc
Q 037651 450 IRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLS 485 (750)
Q Consensus 450 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 485 (750)
|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23333444444444444444443
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.67 E-value=0.00011 Score=65.07 Aligned_cols=126 Identities=14% Similarity=0.172 Sum_probs=52.9
Q ss_pred CCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccC
Q 037651 367 IPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGS 446 (750)
Q Consensus 367 i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 446 (750)
++...+..+++|+.+.+.. .+..+...+|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 3444555566666666654 344455556666666666666653 4444445566666666666654 333233444555
Q ss_pred CCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCC
Q 037651 447 LLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSL 499 (750)
Q Consensus 447 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L 499 (750)
+++|+.+++..+ +.......|.++ .|+.+.+.. .+. .++...+.++++|
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 666666666544 433334455555 666666654 222 4555555445444
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=1.9e-05 Score=89.07 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=12.2
Q ss_pred CCCCCcEEEccCCccccc
Q 037651 156 YLKNLRYLELWYNSFLGS 173 (750)
Q Consensus 156 ~l~~L~~L~L~~n~l~~~ 173 (750)
.+|+||.||.|++.+...
T Consensus 248 ~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDINEE 265 (699)
T ss_pred cCccccEEecCCcchhHH
Confidence 367777777777766543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=8.4e-05 Score=67.84 Aligned_cols=82 Identities=23% Similarity=0.150 Sum_probs=38.2
Q ss_pred CccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeecccccCCccc-chhccCCCCCCEEEc
Q 037651 135 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKF-PESFGQLSAIRVLEL 213 (750)
Q Consensus 135 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L 213 (750)
....+||++|.+.. -..|..++.|.+|.+++|+|+.+-|.--.-+++|+.|.|.+|.|.... -..+..+|+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 45555666655541 123444555555555555555444433333444555555555544211 012344445555555
Q ss_pred ccCcC
Q 037651 214 SDNQW 218 (750)
Q Consensus 214 ~~n~l 218 (750)
-+|+.
T Consensus 121 l~Npv 125 (233)
T KOG1644|consen 121 LGNPV 125 (233)
T ss_pred cCCch
Confidence 54443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=2e-05 Score=88.99 Aligned_cols=153 Identities=24% Similarity=0.314 Sum_probs=97.6
Q ss_pred CCCCEEECcCCCCcccccccccC-CCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCC
Q 037651 79 NSLQLLDLSGNSFLEGQLSRNLG-TLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYL 157 (750)
Q Consensus 79 ~~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 157 (750)
.+|++||+++...+....|..++ .+|+|+.|.+++-.+.... |..+ |.+.|+|..||+++.+++.. ..++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d---F~~l--c~sFpNL~sLDIS~TnI~nl--~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD---FSQL--CASFPNLRSLDISGTNISNL--SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh---HHHH--hhccCccceeecCCCCccCc--HHHhcc
Confidence 57888888887655544555553 5788888888876664321 2111 22344888888888888733 677888
Q ss_pred CCCcEEEccCCcccc-cCCccccCCCCCCeeecccccCCccc--c----hhccCCCCCCEEEcccCcCccccChhhhcCC
Q 037651 158 KNLRYLELWYNSFLG-SIPPSIGNLTFLEELYLTSNQMNGKF--P----ESFGQLSAIRVLELSDNQWEGFITEAHLRNL 230 (750)
Q Consensus 158 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 230 (750)
++|++|.+.+=.+.. ..-..+.++++|+.||+|........ . +.-..+|+|+.||.++..+.+.+-+..+..-
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH 274 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH 274 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence 888888887755542 11224667888888888886654221 1 1223478888888888777665544444444
Q ss_pred CCCCEEec
Q 037651 231 TSLEELSL 238 (750)
Q Consensus 231 ~~L~~L~l 238 (750)
++|+.+.+
T Consensus 275 ~~L~~i~~ 282 (699)
T KOG3665|consen 275 PNLQQIAA 282 (699)
T ss_pred ccHhhhhh
Confidence 55555443
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.47 E-value=4.5e-06 Score=84.11 Aligned_cols=114 Identities=22% Similarity=0.193 Sum_probs=56.7
Q ss_pred hhccCCCCCEEecCCCcC-cccCCcCC-cCCCCCCeEECccCcccc--ccCccccCCCCCCEEeCCCCccc-eeC----C
Q 037651 371 LGQKTPFLTDLDISFNSL-NGSIPQSV-GNLKQLLTLVISNNNLSG--GIPQFLKNISSLYILDMTKNNFS-GEI----P 441 (750)
Q Consensus 371 ~~~~~~~L~~L~ls~n~l-~~~~~~~~-~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~-~~~----~ 441 (750)
+..++++|+.|.++.|+- +..--..+ .+++.|+.+++.++.... .+...-.+|+.|+.|.+++|... +.. .
T Consensus 315 Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 315 LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence 344455555555555542 11110111 234556666665553321 12222245666666666666432 110 1
Q ss_pred ccccCCCCCCEEEccCCcCc-CCCCccccCCCCCCEEecCCCcc
Q 037651 442 ESIGSLLTIRFLVLSNNHLS-GEIPPSLKNCSLMDSLDLGENQL 484 (750)
Q Consensus 442 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~~ 484 (750)
..-..+..|+.+.++++... ...-..+..|++|+.+++-+++-
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 11234566777777777653 22334466777888888777754
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.35 E-value=0.00057 Score=60.46 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=40.4
Q ss_pred CCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCC
Q 037651 26 PSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCN 105 (750)
Q Consensus 26 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 105 (750)
++.++++|+.+.+.. .+..+...+|..+++|+.+.+.++ +......+|.++++|+.+.+..+ ........|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--cccccccccccccc
Confidence 344444555555543 333333444555555555555443 33333344555555555555432 11112233444555
Q ss_pred CCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCC
Q 037651 106 LQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNL 160 (750)
Q Consensus 106 L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 160 (750)
|+.+++..+ +.......+... +|+.+.+.. .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-------~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-------NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--------T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-------CceEEEECC-CccEECCccccccccC
Confidence 555555433 332333333321 455555544 2222333445555544
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.30 E-value=1.3e-05 Score=80.95 Aligned_cols=280 Identities=17% Similarity=0.047 Sum_probs=116.1
Q ss_pred CCcEEECCCCCCCCC--ccccccCCCCCCEEeCcCCC-CcccCCccc-CCCCCCCEEECcCCCCccccccc-ccCCCCCC
Q 037651 32 SLQVLDLSNNGFNST--IPHWLFNITNLLSLDLNSND-LQGDIPDGF-ASLNSLQLLDLSGNSFLEGQLSR-NLGTLCNL 106 (750)
Q Consensus 32 ~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L 106 (750)
.|+.|.+.++.-.+. +-..-.+++++++|++.++. +++..-..+ ..+++|++|++..|..++...-. ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 355666666543221 11223456666666666664 221111112 24566666666665433322222 22456666
Q ss_pred CEEeCcCcc-cccccchh-hhccccccCCCCccEEEccCCcCcc--cCCccccCCCCCcEEEccCCcccccCCcc--ccC
Q 037651 107 QTLKLSLNQ-FRGEVSDF-IDGLSECINSSSLARLELGYNQLTG--NLPISLGYLKNLRYLELWYNSFLGSIPPS--IGN 180 (750)
Q Consensus 107 ~~L~Ls~n~-l~~~~~~~-l~~l~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~ 180 (750)
++|+++.+. +++..-.. ..+.. .++.+.+.+|.-.+ .+-..=+.+..+..+++..|........+ -..
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~------~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCK------ELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HHhhhccCchhhcCcchHHhccch------hhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 666666553 22211011 11111 33444333332110 00000112233444444444221111100 123
Q ss_pred CCCCCeeecccccCCcc-cchhc-cCCCCCCEEEcccCcC-ccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCC
Q 037651 181 LTFLEELYLTSNQMNGK-FPESF-GQLSAIRVLELSDNQW-EGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPP 257 (750)
Q Consensus 181 l~~L~~L~Ls~n~l~~~-~~~~l-~~l~~L~~L~L~~n~l-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 257 (750)
+..|+.|+.+++.-.+. .-.++ .+.++|+.+.++.++- +..-...--.+++.|+.+++..+.. ............+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~-~~d~tL~sls~~C 371 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL-ITDGTLASLSRNC 371 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce-ehhhhHhhhccCC
Confidence 45566666655443211 11112 2455666666666542 1111111123455666666655433 1222222223345
Q ss_pred CceeEEEeccccCCCCC-----ChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCc
Q 037651 258 FKLRYLVIRYYQLGPKF-----PTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNH 318 (750)
Q Consensus 258 ~~L~~L~l~~~~~~~~~-----p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~ 318 (750)
+.|+.+.+++|...... ...-.....+..+.++++.....-.-.....+++|+.+++..++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 56666666655432211 11123345566666666665433332333334556665555543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00067 Score=64.91 Aligned_cols=83 Identities=23% Similarity=0.251 Sum_probs=37.0
Q ss_pred CCCeEECccCccccccCccccCCCCCCEEeCCCC--ccceeCCccccCCCCCCEEEccCCcCcCC-CCccccCCCCCCEE
Q 037651 401 QLLTLVISNNNLSGGIPQFLKNISSLYILDMTKN--NFSGEIPESIGSLLTIRFLVLSNNHLSGE-IPPSLKNCSLMDSL 477 (750)
Q Consensus 401 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 477 (750)
.|+.|++.+..++.. ..+..+++|+.|+++.| ++.+.++-....+++|+++++++|++... .-..+..+.+|..|
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 344444444444321 22344455555555555 33333333333345555555555555410 01123344455556
Q ss_pred ecCCCccc
Q 037651 478 DLGENQLS 485 (750)
Q Consensus 478 ~L~~n~~~ 485 (750)
++.+|..+
T Consensus 122 dl~n~~~~ 129 (260)
T KOG2739|consen 122 DLFNCSVT 129 (260)
T ss_pred hcccCCcc
Confidence 66555544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00038 Score=66.55 Aligned_cols=83 Identities=22% Similarity=0.196 Sum_probs=39.3
Q ss_pred CccEEEccCCcCcccCCccccCCCCCcEEEccCC--cccccCCccccCCCCCCeeecccccCCcc-cchhccCCCCCCEE
Q 037651 135 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYN--SFLGSIPPSIGNLTFLEELYLTSNQMNGK-FPESFGQLSAIRVL 211 (750)
Q Consensus 135 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L 211 (750)
.|+.+++.+..++. -..+-.+++|+.|.++.| ++.+.++.....+++|++|++++|++... --..+..+.+|..|
T Consensus 44 ~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 45555555554441 122334556666666666 44433333344456666666666665410 00113344445555
Q ss_pred EcccCcCc
Q 037651 212 ELSDNQWE 219 (750)
Q Consensus 212 ~L~~n~l~ 219 (750)
++.+|..+
T Consensus 122 dl~n~~~~ 129 (260)
T KOG2739|consen 122 DLFNCSVT 129 (260)
T ss_pred hcccCCcc
Confidence 55555443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00023 Score=68.18 Aligned_cols=102 Identities=25% Similarity=0.195 Sum_probs=74.9
Q ss_pred CCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeecccccCCccc-chhccCCCCCCEE
Q 037651 133 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKF-PESFGQLSAIRVL 211 (750)
Q Consensus 133 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L 211 (750)
+.+.+.|++-+|.++.. ....+++.|++|.|+-|+|+..- .+..|++|++|+|..|.|.... -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 33677778888877632 23457888899999999888553 3788999999999999987432 2356789999999
Q ss_pred EcccCcCccccCh----hhhcCCCCCCEEec
Q 037651 212 ELSDNQWEGFITE----AHLRNLTSLEELSL 238 (750)
Q Consensus 212 ~L~~n~l~~~~~~----~~l~~l~~L~~L~l 238 (750)
.|..|.-.+..+. ..+..+++|+.||=
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccC
Confidence 9999987654332 35677888888864
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.14 E-value=0.00066 Score=75.50 Aligned_cols=63 Identities=25% Similarity=0.165 Sum_probs=27.0
Q ss_pred CCCCCCEEeCcCCC-CcccCCcccC-CCCCCCEEECcCCC-CcccccccccCCCCCCCEEeCcCcc
Q 037651 53 NITNLLSLDLNSND-LQGDIPDGFA-SLNSLQLLDLSGNS-FLEGQLSRNLGTLCNLQTLKLSLNQ 115 (750)
Q Consensus 53 ~l~~L~~L~Ls~n~-i~~~~~~~~~-~l~~L~~L~Ls~n~-~~~~~~~~~l~~l~~L~~L~Ls~n~ 115 (750)
.+++|+.|+++++. +++..-..+. .+++|++|.+.+|. +....+......+++|++|+++.+.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 34555555555554 3322222222 24555555544444 1112222222344555555555443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.02 E-value=0.0013 Score=73.06 Aligned_cols=112 Identities=23% Similarity=0.087 Sum_probs=54.6
Q ss_pred CCCCCEEeCcCCCCccc--CCcccCCCCCCCEEECcCCCCccccc----ccccCCCCCCCEEeCcCcc-cccccchhhhc
Q 037651 54 ITNLLSLDLNSNDLQGD--IPDGFASLNSLQLLDLSGNSFLEGQL----SRNLGTLCNLQTLKLSLNQ-FRGEVSDFIDG 126 (750)
Q Consensus 54 l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~~~~~~~----~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~ 126 (750)
++.|+.|.+..+.-... .-.....+++|+.|+++++....... ......+.+|+.|+++.+. ++...-..++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666532212 22334566666666666521011111 1122345666677776665 44333333322
Q ss_pred cccccCCCCccEEEccCCc-Cccc-CCccccCCCCCcEEEccCCcc
Q 037651 127 LSECINSSSLARLELGYNQ-LTGN-LPISLGYLKNLRYLELWYNSF 170 (750)
Q Consensus 127 l~~~~~~~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l 170 (750)
. +++|++|.+.+|. ++.. +-.....++.|++|++++|..
T Consensus 267 ~-----c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 R-----CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred h-----CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 1 2367777766665 3322 112233566677777776654
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.65 E-value=0.0049 Score=35.03 Aligned_cols=19 Identities=47% Similarity=0.765 Sum_probs=8.9
Q ss_pred CCeEeccCCcCCCCcccccC
Q 037651 589 LGTLNLSGNQLVGKIPTQIG 608 (750)
Q Consensus 589 L~~L~Ls~N~l~~~~p~~l~ 608 (750)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 444555555554 4444443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.64 E-value=0.005 Score=35.00 Aligned_cols=21 Identities=57% Similarity=0.699 Sum_probs=14.5
Q ss_pred cCcEEEccCCccCcCCCccccC
Q 037651 612 WLESLDLSRNKLSGSIPPSMVS 633 (750)
Q Consensus 612 ~L~~L~Ls~N~l~~~~p~~l~~ 633 (750)
+|+.|||++|+++ .+|.+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777777 66766554
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=0.00089 Score=64.24 Aligned_cols=100 Identities=27% Similarity=0.213 Sum_probs=50.3
Q ss_pred CCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCC
Q 037651 55 TNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSS 134 (750)
Q Consensus 55 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~ 134 (750)
.+.+.|++-+|.+.++ .....++.|++|.||-|+|.+ -..+..|++|+.|+|..|.|... +.+..+. +++
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sl--dEL~YLk---nlp 88 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESL--DELEYLK---NLP 88 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccH--HHHHHHh---cCc
Confidence 3444555555555432 123355556666666665322 22355566666666666655432 1122222 334
Q ss_pred CccEEEccCCcCcccCCc-----cccCCCCCcEEE
Q 037651 135 SLARLELGYNQLTGNLPI-----SLGYLKNLRYLE 164 (750)
Q Consensus 135 ~L~~L~L~~n~l~~~~~~-----~l~~l~~L~~L~ 164 (750)
+|+.|+|..|...+.-+. .+..+++|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 677777776665544332 244566666665
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.85 E-value=0.00036 Score=75.47 Aligned_cols=83 Identities=30% Similarity=0.378 Sum_probs=36.2
Q ss_pred CCeEECccCccccc----cCccccCCCCCCEEeCCCCccceeCCcccc----CC-CCCCEEEccCCcCcCC----CCccc
Q 037651 402 LLTLVISNNNLSGG----IPQFLKNISSLYILDMTKNNFSGEIPESIG----SL-LTIRFLVLSNNHLSGE----IPPSL 468 (750)
Q Consensus 402 L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~~~----~~~~~ 468 (750)
+..+.+.+|.+... +...+.....|+.|++++|.+.+..-..+. .. ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 44445555544432 122334455555566666555532221111 11 3344455555554422 22333
Q ss_pred cCCCCCCEEecCCCcc
Q 037651 469 KNCSLMDSLDLGENQL 484 (750)
Q Consensus 469 ~~l~~L~~L~L~~n~~ 484 (750)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 3445555555555554
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.77 E-value=0.0028 Score=59.28 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=75.4
Q ss_pred CCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCccccc
Q 037651 17 NLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQL 96 (750)
Q Consensus 17 ~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~ 96 (750)
.++.+|. ..+..++..+.||++.|++. .....|+.++.+..||++.|.+. ..|..+.....++++++..|.. ...
T Consensus 29 ~~s~~~v-~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~--~~~ 103 (326)
T KOG0473|consen 29 ELSEIPV-REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH--SQQ 103 (326)
T ss_pred Hhcccch-hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch--hhC
Confidence 3445554 55667788889999998875 34455778888899999999888 7788888888899999888863 457
Q ss_pred ccccCCCCCCCEEeCcCcccc
Q 037651 97 SRNLGTLCNLQTLKLSLNQFR 117 (750)
Q Consensus 97 ~~~l~~l~~L~~L~Ls~n~l~ 117 (750)
|.+++..++++++++..|.+.
T Consensus 104 p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 104 PKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred CccccccCCcchhhhccCcch
Confidence 888999999999998888764
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.66 E-value=0.0011 Score=71.70 Aligned_cols=183 Identities=23% Similarity=0.256 Sum_probs=107.6
Q ss_pred CcEEEeecccccCCCCcchh---ccCCCCCEEecCCCcCcccC----CcCCcCC-CCCCeEECccCccccc----cCccc
Q 037651 353 LTKLYLRDNLFSGPIPNDLG---QKTPFLTDLDISFNSLNGSI----PQSVGNL-KQLLTLVISNNNLSGG----IPQFL 420 (750)
Q Consensus 353 L~~L~l~~n~l~~~i~~~~~---~~~~~L~~L~ls~n~l~~~~----~~~~~~l-~~L~~L~L~~n~l~~~----~~~~l 420 (750)
+..+.+.+|.+.......+. ...+.|+.|+++.|.+.... -..+... ..+++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55566666655533222221 23456667777777765221 1122222 4566677777776643 34455
Q ss_pred cCCCCCCEEeCCCCccce----eCCcccc----CCCCCCEEEccCCcCcCC----CCccccCCCC-CCEEecCCCccccc
Q 037651 421 KNISSLYILDMTKNNFSG----EIPESIG----SLLTIRFLVLSNNHLSGE----IPPSLKNCSL-MDSLDLGENQLSGN 487 (750)
Q Consensus 421 ~~l~~L~~L~Ls~n~l~~----~~~~~~~----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~-L~~L~L~~n~~~~~ 487 (750)
.....++.++++.|.+.. .++..+. ...++++|.+++|.++.. ....+...+. +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 567778888888887641 1222233 366788888888887622 1123444455 66788888887643
Q ss_pred CChhhhhc---C-CCCCEEEccCccceeec----CccccCCCCCcEEEcccCcCCC
Q 037651 488 IPAWIGES---M-PSLSILRLRSNHFNGTI----PSELCKLSALHILDLSHNNLSG 535 (750)
Q Consensus 488 ~p~~~~~~---l-~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~ 535 (750)
.-..+... + ..++.++++.|.++..- ...+..++.++.+.++.|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 22222211 3 46688888888887544 3345567788889999887763
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.55 E-value=0.12 Score=27.17 Aligned_cols=13 Identities=54% Similarity=0.738 Sum_probs=5.0
Q ss_pred cCCeEeccCCcCC
Q 037651 588 HLGTLNLSGNQLV 600 (750)
Q Consensus 588 ~L~~L~Ls~N~l~ 600 (750)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555544
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.30 E-value=0.16 Score=26.67 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=5.2
Q ss_pred CcCEEecCCCCCCC
Q 037651 7 SIVELHLPNSNLPI 20 (750)
Q Consensus 7 ~L~~L~L~~~~l~~ 20 (750)
+|+.|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 44445555444443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.58 E-value=0.0065 Score=56.96 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=73.8
Q ss_pred CCCCCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCC
Q 037651 3 SKLPSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQ 82 (750)
Q Consensus 3 ~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 82 (750)
..+...+.||++.+++..... -++.++.+..||++.|.+. ..|..+...+.++++++..|..+ ..|.++...++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~--n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGK--NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hccceeeeehhhhhHHHhhcc--chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 456788999999999887764 4556788899999999986 67888999999999999999888 7899999999999
Q ss_pred EEECcCCC
Q 037651 83 LLDLSGNS 90 (750)
Q Consensus 83 ~L~Ls~n~ 90 (750)
++++..|.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 99999998
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.01 E-value=0.41 Score=28.34 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=12.0
Q ss_pred CCCCEEecCCCcccccCChhhh
Q 037651 472 SLMDSLDLGENQLSGNIPAWIG 493 (750)
Q Consensus 472 ~~L~~L~L~~n~~~~~~p~~~~ 493 (750)
++|+.|+|++|++. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45566666666665 5555543
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.01 E-value=0.41 Score=28.34 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=12.0
Q ss_pred CCCCEEecCCCcccccCChhhh
Q 037651 472 SLMDSLDLGENQLSGNIPAWIG 493 (750)
Q Consensus 472 ~~L~~L~L~~n~~~~~~p~~~~ 493 (750)
++|+.|+|++|++. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45566666666665 5555543
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.67 E-value=0.44 Score=28.17 Aligned_cols=13 Identities=54% Similarity=0.677 Sum_probs=6.4
Q ss_pred cCCeEeccCCcCC
Q 037651 588 HLGTLNLSGNQLV 600 (750)
Q Consensus 588 ~L~~L~Ls~N~l~ 600 (750)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4445555555544
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.67 E-value=0.44 Score=28.17 Aligned_cols=13 Identities=54% Similarity=0.677 Sum_probs=6.4
Q ss_pred cCCeEeccCCcCC
Q 037651 588 HLGTLNLSGNQLV 600 (750)
Q Consensus 588 ~L~~L~Ls~N~l~ 600 (750)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4445555555544
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.14 E-value=0.07 Score=49.36 Aligned_cols=82 Identities=26% Similarity=0.200 Sum_probs=49.4
Q ss_pred CCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCccc-CCcccC-CCCCCCEEECcCCCCcccccccccCCCCCCCEE
Q 037651 32 SLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGD-IPDGFA-SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTL 109 (750)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 109 (750)
.++.+|-+++.|..+--+.+.+++.++.|.+.+|.--+. --+-++ -.++|+.|++++|.-++...-..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456777777777655556667777777777777643221 111122 346777777777765554445556667777776
Q ss_pred eCcC
Q 037651 110 KLSL 113 (750)
Q Consensus 110 ~Ls~ 113 (750)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.14 E-value=0.51 Score=27.27 Aligned_cols=13 Identities=62% Similarity=0.692 Sum_probs=4.6
Q ss_pred CCCEEeCcCcccc
Q 037651 105 NLQTLKLSLNQFR 117 (750)
Q Consensus 105 ~L~~L~Ls~n~l~ 117 (750)
+|++|++++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444433
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.29 E-value=0.48 Score=44.02 Aligned_cols=82 Identities=27% Similarity=0.291 Sum_probs=40.7
Q ss_pred CCCEEECcCCCCcccccccccCCCCCCCEEeCcCccccc-ccchhhhccccccCCCCccEEEccCC-cCcccCCccccCC
Q 037651 80 SLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRG-EVSDFIDGLSECINSSSLARLELGYN-QLTGNLPISLGYL 157 (750)
Q Consensus 80 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l 157 (750)
.++.+|-+++. +.....+.+.+++.++.|.+.+|.--+ .--+.++.+ .++|+.|++++| +|+...-..+..+
T Consensus 102 ~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~-----~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGL-----APSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred eEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhccc-----ccchheeeccCCCeechhHHHHHHHh
Confidence 34555555554 222223334455555555555443211 111112221 237777777776 3554444566677
Q ss_pred CCCcEEEccC
Q 037651 158 KNLRYLELWY 167 (750)
Q Consensus 158 ~~L~~L~L~~ 167 (750)
++|+.|.+.+
T Consensus 176 knLr~L~l~~ 185 (221)
T KOG3864|consen 176 KNLRRLHLYD 185 (221)
T ss_pred hhhHHHHhcC
Confidence 7777777654
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.54 E-value=3.2 Score=24.64 Aligned_cols=14 Identities=57% Similarity=0.724 Sum_probs=9.6
Q ss_pred ccCcEEEccCCccC
Q 037651 611 EWLESLDLSRNKLS 624 (750)
Q Consensus 611 ~~L~~L~Ls~N~l~ 624 (750)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56677777777765
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.43 E-value=3.9 Score=24.18 Aligned_cols=13 Identities=54% Similarity=0.649 Sum_probs=7.5
Q ss_pred cCCeEeccCCcCC
Q 037651 588 HLGTLNLSGNQLV 600 (750)
Q Consensus 588 ~L~~L~Ls~N~l~ 600 (750)
+|+.|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3555666666655
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=64.95 E-value=14 Score=39.30 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=7.9
Q ss_pred CCCCCEEeCCCCccc
Q 037651 423 ISSLYILDMTKNNFS 437 (750)
Q Consensus 423 l~~L~~L~Ls~n~l~ 437 (750)
-+.+..|++++|...
T Consensus 439 tqtl~kldisgn~mg 453 (553)
T KOG4242|consen 439 TQTLAKLDISGNGMG 453 (553)
T ss_pred CcccccccccCCCcc
Confidence 345555555555543
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.79 E-value=6.3 Score=23.76 Aligned_cols=14 Identities=57% Similarity=0.653 Sum_probs=7.8
Q ss_pred ccCcEEEccCCccC
Q 037651 611 EWLESLDLSRNKLS 624 (750)
Q Consensus 611 ~~L~~L~Ls~N~l~ 624 (750)
++|+.|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34556666666554
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=58.35 E-value=31 Score=36.78 Aligned_cols=57 Identities=26% Similarity=0.299 Sum_probs=33.1
Q ss_pred CCeEeccCCcCCCCcc---cccCCCccCcEEEccCCccCc----CCCccccCCCCCCeEECcCC
Q 037651 589 LGTLNLSGNQLVGKIP---TQIGKLEWLESLDLSRNKLSG----SIPPSMVSIRFLSFLNLSFN 645 (750)
Q Consensus 589 L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~l~ls~N 645 (750)
+..+.++.|.+....- .....-+.+..||+++|.... .+|..+..-..+.....+.|
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n 478 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLN 478 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCC
Confidence 5667777777663221 223445677888888887652 24444444455655555555
No 91
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=45.28 E-value=2.3 Score=37.48 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=3.9
Q ss_pred eeehhhHHH
Q 037651 686 LFVSVGLGF 694 (750)
Q Consensus 686 ~~~~~~~~~ 694 (750)
++|++++|+
T Consensus 50 IVIGvVVGV 58 (154)
T PF04478_consen 50 IVIGVVVGV 58 (154)
T ss_pred EEEEEEecc
Confidence 344444443
No 92
>PF15102 TMEM154: TMEM154 protein family
Probab=38.53 E-value=18 Score=31.88 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=14.3
Q ss_pred eeehhh-HHHHHHHHHHHHHhhhcchhHH
Q 037651 686 LFVSVG-LGFIMGFWGVCGTLIIKKSWRY 713 (750)
Q Consensus 686 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 713 (750)
++|.+. +.+++.++++++++++++|||.
T Consensus 59 LmIlIP~VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred EEEeHHHHHHHHHHHHHHHheeEEeeccc
Confidence 334433 3334444444555556677776
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=34.46 E-value=20 Score=21.00 Aligned_cols=10 Identities=60% Similarity=0.777 Sum_probs=4.2
Q ss_pred CCCEEECcCC
Q 037651 80 SLQLLDLSGN 89 (750)
Q Consensus 80 ~L~~L~Ls~n 89 (750)
+|++|++++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3444444444
No 94
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=33.87 E-value=34 Score=32.25 Aligned_cols=27 Identities=7% Similarity=0.217 Sum_probs=17.0
Q ss_pred CceeeeeehhhHHHHHHHHHHHHHhhh
Q 037651 681 HDKLWLFVSVGLGFIMGFWGVCGTLII 707 (750)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (750)
.++.+++++++.|+++++++++++.++
T Consensus 34 ~d~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 34 KDYVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred ccceeeeeeeecchhhhHHHHHHHHHH
Confidence 456778888877776665554444444
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=33.84 E-value=23 Score=46.48 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=27.1
Q ss_pred eccCCcCCCCcccccCCCccCcEEEccCCccCc
Q 037651 593 NLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSG 625 (750)
Q Consensus 593 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 625 (750)
||++|+|+...+..|..+++|+.|+|++|++..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688888887777788888888888888888863
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.94 E-value=29 Score=29.84 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=9.3
Q ss_pred eehhhHHHHHHHHHHHHH
Q 037651 687 FVSVGLGFIMGFWGVCGT 704 (750)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~ 704 (750)
++++++|+++|+++++++
T Consensus 66 i~~Ii~gv~aGvIg~Ill 83 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILL 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHH
Confidence 455555555555544443
No 97
>PHA02657 hypothetical protein; Provisional
Probab=31.35 E-value=2.5e+02 Score=22.09 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=17.4
Q ss_pred HhhhcchhHHHHHHHHHHHHHHhhHHhhHHHHHHH
Q 037651 704 TLIIKKSWRYAYFQFFDKIKDQLLTFLALSVVRLK 738 (750)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (750)
.+++..+|. ....+...+.-++.-....+.+.|.
T Consensus 43 lLLYLvkWS-~V~~a~n~iKtk~Lkit~~TRRsF~ 76 (95)
T PHA02657 43 LLIYLVDWS-LVKDACNRFKTQVLKILSLSKTHFT 76 (95)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334444453 3555666665555545545555554
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.76 E-value=27 Score=38.01 Aligned_cols=64 Identities=27% Similarity=0.224 Sum_probs=36.8
Q ss_pred CCCCCCcEEECCCCCCCCCcc--ccccCCCCCCEEeCcCCCCcccCCcccCC--CCCCCEEECcCCCC
Q 037651 28 LNFTSLQVLDLSNNGFNSTIP--HWLFNITNLLSLDLNSNDLQGDIPDGFAS--LNSLQLLDLSGNSF 91 (750)
Q Consensus 28 ~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n~~ 91 (750)
.+.+.+..++|++|++...-. .--...++|+.|+|++|...-.....+.+ ...|+.|-+.+|.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcc
Confidence 355677778888887754311 11224477888888888222111122332 34577888888874
No 99
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=26.57 E-value=55 Score=26.23 Aligned_cols=29 Identities=14% Similarity=0.330 Sum_probs=14.7
Q ss_pred eeeeehhhHHHHHHHHHHHHHhhhcchhH
Q 037651 684 LWLFVSVGLGFIMGFWGVCGTLIIKKSWR 712 (750)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (750)
.|.|++.+.|+++.+++++.+..++.+|+
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 35566666566555554333333444554
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.22 E-value=38 Score=36.97 Aligned_cols=64 Identities=25% Similarity=0.196 Sum_probs=33.3
Q ss_pred CCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCC--cCcccCCccccC--CCCCcEEEccCCccc
Q 037651 102 TLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYN--QLTGNLPISLGY--LKNLRYLELWYNSFL 171 (750)
Q Consensus 102 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n--~l~~~~~~~l~~--l~~L~~L~L~~n~l~ 171 (750)
+-+.+..++|++|++... +.+..+. ...|+|+.|+|++| .+. ...++.+ ...|++|-+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~L--d~~ssls--q~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHL--DALSSLS--QIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhch--hhhhHHH--Hhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccc
Confidence 445566666777766543 1122221 12347777777777 332 1122222 234677777777655
No 101
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=24.35 E-value=1e+02 Score=20.56 Aligned_cols=6 Identities=33% Similarity=0.191 Sum_probs=2.2
Q ss_pred eehhhH
Q 037651 687 FVSVGL 692 (750)
Q Consensus 687 ~~~~~~ 692 (750)
.+++++
T Consensus 14 a~~VvV 19 (40)
T PF08693_consen 14 AVGVVV 19 (40)
T ss_pred EEEEEe
Confidence 333333
No 102
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=24.24 E-value=40 Score=26.33 Aligned_cols=32 Identities=19% Similarity=0.535 Sum_probs=16.8
Q ss_pred eeeeeehhhHHHHHHHHHHH-HHhhhcchhHHH
Q 037651 683 KLWLFVSVGLGFIMGFWGVC-GTLIIKKSWRYA 714 (750)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 714 (750)
..|+++.++.|.++.++.++ ++++++.||+.+
T Consensus 14 ~~~yyiiA~gga~llL~~v~l~vvL~C~r~~~a 46 (87)
T PF11980_consen 14 PYWYYIIAMGGALLLLVAVCLGVVLYCHRFHWA 46 (87)
T ss_pred ceeeHHHhhccHHHHHHHHHHHHHHhhhhhccc
Confidence 35666655555544444333 455566666543
No 103
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.50 E-value=48 Score=43.75 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=11.3
Q ss_pred hhhccccCCeEeccCCcCC
Q 037651 582 ELTSLLHLGTLNLSGNQLV 600 (750)
Q Consensus 582 ~l~~l~~L~~L~Ls~N~l~ 600 (750)
.|..+++|+.|+|++|.+.
T Consensus 14 ~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 14 ICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred HhccCCCceEEEeeCCccc
Confidence 3455666666666666554
Done!