Query 037651
Match_columns 750
No_of_seqs 660 out of 4221
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 04:27:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.9E-76 1.3E-80 688.0 46.6 630 6-673 50-742 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-70 4.1E-75 641.7 45.0 605 31-654 50-699 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 7.7E-60 2.6E-64 546.1 50.2 588 8-653 6-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 7.8E-58 2.7E-62 529.3 46.4 592 34-673 7-624 (680)
5 3t6q_A CD180 antigen; protein- 100.0 2.8E-56 9.6E-61 509.3 46.1 540 8-652 14-564 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-55 3.8E-60 504.4 44.2 540 8-653 13-563 (606)
7 3t6q_A CD180 antigen; protein- 100.0 5.8E-55 2E-59 498.4 44.3 524 6-628 33-564 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-54 5.4E-59 510.9 39.3 537 9-653 7-565 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 5.5E-53 1.9E-57 482.1 38.5 519 6-628 32-562 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-51 1E-55 483.1 45.1 519 34-654 7-545 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 6.5E-51 2.2E-55 461.8 38.3 521 7-654 8-537 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 8.6E-49 2.9E-53 444.4 37.6 498 6-629 28-536 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 5.1E-49 1.7E-53 443.9 31.5 500 5-653 4-515 (549)
14 4g8a_A TOLL-like receptor 4; l 100.0 3.5E-46 1.2E-50 428.9 43.7 537 9-651 34-583 (635)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.9E-47 9.8E-52 429.6 30.6 479 6-628 26-514 (549)
16 4eco_A Uncharacterized protein 100.0 6.7E-48 2.3E-52 439.4 20.4 448 55-650 81-602 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 3.1E-47 1.1E-51 426.0 23.9 470 9-652 3-485 (520)
18 2z7x_B TOLL-like receptor 1, v 100.0 4.9E-46 1.7E-50 416.4 30.2 442 6-538 21-485 (520)
19 4eco_A Uncharacterized protein 100.0 2.5E-46 8.4E-51 426.5 20.2 449 31-534 81-600 (636)
20 4g8a_A TOLL-like receptor 4; l 100.0 8.6E-44 2.9E-48 409.0 39.2 515 7-626 53-582 (635)
21 4ecn_A Leucine-rich repeat pro 100.0 7.7E-45 2.6E-49 420.0 25.0 465 31-534 323-864 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-44 6E-49 407.1 24.6 470 31-653 31-515 (562)
23 4ecn_A Leucine-rich repeat pro 100.0 1.5E-43 5E-48 409.4 31.9 429 134-650 323-842 (876)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-43 1E-47 397.0 31.2 463 5-538 30-514 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 1.5E-40 5.1E-45 362.1 23.3 420 30-653 10-434 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 5E-39 1.7E-43 353.4 32.8 392 10-514 14-412 (455)
27 3v47_A TOLL-like receptor 5B a 100.0 3.3E-38 1.1E-42 346.8 34.7 387 35-539 14-413 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 3.8E-39 1.3E-43 351.0 26.0 375 135-654 12-417 (454)
29 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-36 5.5E-41 330.6 27.8 359 26-542 37-395 (457)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2.5E-36 8.6E-41 329.0 27.4 365 3-501 39-403 (457)
31 1o6v_A Internalin A; bacterial 100.0 6.3E-35 2.2E-39 320.8 34.1 344 30-485 45-388 (466)
32 1o6v_A Internalin A; bacterial 100.0 2.4E-34 8.3E-39 316.2 35.4 346 53-511 44-389 (466)
33 2id5_A Lingo-1, leucine rich r 100.0 4.1E-35 1.4E-39 323.9 24.4 235 374-652 126-360 (477)
34 2id5_A Lingo-1, leucine rich r 100.0 1.4E-34 4.8E-39 319.7 28.6 158 56-220 33-190 (477)
35 1ogq_A PGIP-2, polygalacturona 100.0 7.6E-34 2.6E-38 294.5 18.9 253 351-650 50-307 (313)
36 3o6n_A APL1; leucine-rich repe 100.0 2.7E-32 9.3E-37 292.9 27.5 128 351-486 226-353 (390)
37 1ogq_A PGIP-2, polygalacturona 100.0 4.5E-33 1.6E-37 288.6 19.5 252 376-672 50-305 (313)
38 3o6n_A APL1; leucine-rich repe 100.0 5.7E-32 1.9E-36 290.4 28.5 311 257-650 44-354 (390)
39 3oja_B Anopheles plasmodium-re 100.0 6E-32 2E-36 306.2 27.5 331 258-672 51-381 (597)
40 3oja_B Anopheles plasmodium-re 100.0 1.6E-31 5.3E-36 302.8 27.7 128 351-486 232-359 (597)
41 4fmz_A Internalin; leucine ric 100.0 9.9E-31 3.4E-35 276.3 30.1 285 278-648 62-346 (347)
42 4fmz_A Internalin; leucine ric 100.0 2.4E-30 8.1E-35 273.3 31.0 149 375-534 198-346 (347)
43 1z7x_W Ribonuclease inhibitor; 100.0 6.2E-34 2.1E-38 313.4 -3.4 111 375-485 283-411 (461)
44 1z7x_W Ribonuclease inhibitor; 100.0 7.6E-34 2.6E-38 312.7 -4.2 386 55-536 3-442 (461)
45 1xku_A Decorin; proteoglycan, 100.0 5.2E-29 1.8E-33 260.9 28.6 249 350-649 51-307 (330)
46 1xku_A Decorin; proteoglycan, 100.0 1.7E-28 5.9E-33 256.9 30.0 246 7-274 32-279 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 4.6E-29 1.6E-33 261.4 24.9 247 350-648 53-307 (332)
48 2ft3_A Biglycan; proteoglycan, 100.0 8.2E-29 2.8E-33 259.5 25.8 267 7-320 34-307 (332)
49 2z66_A Variable lymphocyte rec 100.0 1.4E-28 4.7E-33 254.8 24.0 250 354-651 10-264 (306)
50 3ogk_B Coronatine-insensitive 100.0 2.9E-31 1E-35 301.8 1.6 399 102-529 110-546 (592)
51 2z80_A TOLL-like receptor 2, v 100.0 2E-29 6.8E-34 266.6 15.4 278 333-652 34-318 (353)
52 3ogk_B Coronatine-insensitive 100.0 5.8E-31 2E-35 299.3 1.1 159 350-508 377-549 (592)
53 2z66_A Variable lymphocyte rec 100.0 1.4E-28 4.8E-33 254.7 18.7 275 334-653 11-292 (306)
54 3zyj_A Leucine-rich repeat-con 100.0 6.1E-28 2.1E-32 263.1 24.6 251 352-650 44-294 (440)
55 3zyi_A Leucine-rich repeat-con 100.0 7.5E-28 2.6E-32 263.4 25.0 250 353-650 56-305 (452)
56 4fcg_A Uncharacterized protein 100.0 2.7E-28 9.3E-33 254.2 18.9 225 376-648 81-314 (328)
57 4fcg_A Uncharacterized protein 100.0 1.1E-27 3.7E-32 249.7 20.5 227 350-625 80-315 (328)
58 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-27 4.5E-32 244.6 19.7 252 354-653 14-266 (285)
59 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-27 7.6E-32 242.9 18.9 255 334-633 15-270 (285)
60 2z80_A TOLL-like receptor 2, v 99.9 2.5E-27 8.4E-32 250.5 18.7 282 6-324 31-318 (353)
61 1wwl_A Monocyte differentiatio 99.9 1E-28 3.4E-33 256.1 5.5 248 351-650 43-311 (312)
62 3zyi_A Leucine-rich repeat-con 99.9 3.5E-26 1.2E-30 250.1 25.4 247 333-625 57-304 (452)
63 3zyj_A Leucine-rich repeat-con 99.9 3.7E-26 1.3E-30 249.0 24.7 246 333-624 46-292 (440)
64 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-25 4.2E-30 251.7 28.7 260 309-652 42-301 (622)
65 3o53_A Protein LRIM1, AGAP0063 99.9 4.5E-28 1.5E-32 251.8 7.2 249 350-655 33-283 (317)
66 1wwl_A Monocyte differentiatio 99.9 9.8E-28 3.4E-32 248.6 9.8 225 353-625 65-310 (312)
67 2p1m_B Transport inhibitor res 99.9 4.5E-29 1.5E-33 283.9 -6.0 428 27-506 62-540 (594)
68 2p1m_B Transport inhibitor res 99.9 5.7E-29 2E-33 283.0 -6.0 172 35-214 47-243 (594)
69 3g06_A SSPH2 (leucine-rich rep 99.9 3.4E-25 1.2E-29 248.1 24.5 267 284-635 42-308 (622)
70 3oja_A Leucine-rich immune mol 99.9 1.1E-26 3.9E-31 255.2 12.0 237 350-643 33-270 (487)
71 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-26 4.9E-31 240.4 10.5 243 352-652 11-255 (317)
72 3oja_A Leucine-rich immune mol 99.9 9.8E-26 3.3E-30 247.8 14.6 221 375-652 33-255 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 1.2E-24 4.3E-29 221.3 21.5 209 401-653 29-242 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 1.5E-24 5.3E-29 220.6 21.3 225 356-628 12-241 (276)
75 2o6q_A Variable lymphocyte rec 99.9 2E-23 6.9E-28 211.4 22.9 205 402-652 18-222 (270)
76 2o6q_A Variable lymphocyte rec 99.9 3.9E-23 1.3E-27 209.3 23.6 203 7-220 17-219 (270)
77 1p9a_G Platelet glycoprotein I 99.9 3.9E-23 1.3E-27 211.0 21.0 203 398-650 8-210 (290)
78 1p9a_G Platelet glycoprotein I 99.9 7E-23 2.4E-27 209.1 21.6 204 2-220 6-209 (290)
79 3rfs_A Internalin B, repeat mo 99.9 3E-23 1E-27 210.3 18.2 203 398-654 39-241 (272)
80 3goz_A Leucine-rich repeat-con 99.9 1.2E-24 4.1E-29 230.5 6.0 255 356-650 3-299 (362)
81 3rfs_A Internalin B, repeat mo 99.9 5.7E-23 2E-27 208.2 18.1 202 4-224 39-240 (272)
82 2ca6_A RAN GTPase-activating p 99.9 1.7E-24 5.8E-29 231.8 3.7 247 366-652 23-320 (386)
83 4glp_A Monocyte differentiatio 99.9 4.3E-23 1.5E-27 213.6 12.7 204 376-649 91-308 (310)
84 4glp_A Monocyte differentiatio 99.9 3.6E-23 1.2E-27 214.1 11.8 201 424-669 91-305 (310)
85 2ast_B S-phase kinase-associat 99.9 2.5E-23 8.6E-28 218.4 8.1 251 352-654 48-312 (336)
86 2ast_B S-phase kinase-associat 99.9 3.2E-23 1.1E-27 217.6 5.9 235 351-633 70-315 (336)
87 3m19_A Variable lymphocyte rec 99.9 5E-21 1.7E-25 191.5 20.9 179 7-196 15-193 (251)
88 2xwt_C Thyrotropin receptor; s 99.9 1E-21 3.6E-26 195.0 15.3 196 401-645 32-236 (239)
89 1h6u_A Internalin H; cell adhe 99.9 2.7E-21 9.4E-26 199.4 18.3 192 375-625 40-231 (308)
90 2ca6_A RAN GTPase-activating p 99.9 2E-23 6.8E-28 223.4 2.3 193 27-220 28-258 (386)
91 3goz_A Leucine-rich repeat-con 99.9 1.6E-22 5.5E-27 214.1 8.9 265 11-303 3-305 (362)
92 1h6u_A Internalin H; cell adhe 99.9 5.7E-21 1.9E-25 197.0 19.9 191 5-219 40-230 (308)
93 2xwt_C Thyrotropin receptor; s 99.9 1.3E-21 4.5E-26 194.2 13.8 205 18-241 23-236 (239)
94 3m19_A Variable lymphocyte rec 99.9 8.8E-21 3E-25 189.7 19.6 181 31-221 14-194 (251)
95 4ay9_X Follicle-stimulating ho 99.9 1E-20 3.4E-25 199.2 18.3 244 354-648 12-259 (350)
96 2o6s_A Variable lymphocyte rec 99.8 3E-20 1E-24 180.1 15.8 132 401-533 29-160 (208)
97 2o6s_A Variable lymphocyte rec 99.8 5.6E-20 1.9E-24 178.2 15.7 163 350-521 27-189 (208)
98 4ay9_X Follicle-stimulating ho 99.8 4.5E-20 1.5E-24 194.2 16.1 198 334-535 13-216 (350)
99 3cvr_A Invasion plasmid antige 99.8 6.7E-20 2.3E-24 202.6 17.8 196 376-635 59-254 (571)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 3.6E-19 1.2E-23 173.7 16.5 157 451-652 14-170 (220)
101 3cvr_A Invasion plasmid antige 99.8 3.2E-19 1.1E-23 197.2 17.1 189 308-546 60-255 (571)
102 2v9t_B SLIT homolog 2 protein 99.8 2.4E-18 8.2E-23 167.8 16.5 154 451-650 14-167 (220)
103 1h6t_A Internalin B; cell adhe 99.8 1.8E-18 6.1E-23 176.6 16.1 185 12-220 30-214 (291)
104 1h6t_A Internalin B; cell adhe 99.8 2.6E-18 8.9E-23 175.4 16.0 172 4-197 44-215 (291)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 5.5E-18 1.9E-22 165.3 16.6 138 350-487 31-168 (220)
106 2xot_A Amphoterin-induced prot 99.8 2.3E-18 7.7E-23 181.9 13.8 176 354-534 21-202 (361)
107 2xot_A Amphoterin-induced prot 99.8 2.8E-18 9.6E-23 181.2 14.4 177 34-220 21-203 (361)
108 2v9t_B SLIT homolog 2 protein 99.8 9.4E-18 3.2E-22 163.6 16.9 133 56-195 33-165 (220)
109 3e6j_A Variable lymphocyte rec 99.8 1.3E-17 4.4E-22 163.8 16.6 103 428-534 23-125 (229)
110 1m9s_A Internalin B; cell inva 99.8 1.4E-18 4.9E-23 194.3 10.8 188 9-220 24-211 (605)
111 1m9s_A Internalin B; cell inva 99.7 1.1E-17 3.9E-22 187.0 16.4 173 4-198 41-213 (605)
112 3e6j_A Variable lymphocyte rec 99.7 7.6E-17 2.6E-21 158.3 18.5 155 33-198 21-175 (229)
113 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.6E-22 159.7 11.9 155 52-220 41-195 (197)
114 4b8c_D Glucose-repressible alc 99.7 1.6E-18 5.4E-23 199.1 5.7 229 351-653 173-409 (727)
115 4ezg_A Putative uncharacterize 99.7 3.1E-17 1.1E-21 157.2 12.8 155 27-196 40-195 (197)
116 1dce_A Protein (RAB geranylger 99.7 2E-19 6.8E-24 200.1 -3.5 189 398-652 347-550 (567)
117 1xeu_A Internalin C; cellular 99.7 2.4E-17 8.1E-22 165.5 11.6 170 399-626 18-187 (263)
118 1xeu_A Internalin C; cellular 99.7 1.4E-17 4.8E-22 167.1 8.8 170 29-220 17-186 (263)
119 1dce_A Protein (RAB geranylger 99.7 3.3E-19 1.1E-23 198.4 -5.0 183 421-669 346-544 (567)
120 1w8a_A SLIT protein; signaling 99.7 8.7E-17 3E-21 153.1 12.3 69 583-651 74-142 (192)
121 4b8c_D Glucose-repressible alc 99.7 5.1E-18 1.7E-22 194.9 3.5 178 330-514 173-358 (727)
122 1w8a_A SLIT protein; signaling 99.6 5.2E-16 1.8E-20 147.7 11.3 132 354-489 11-143 (192)
123 2wfh_A SLIT homolog 2 protein 99.6 1.3E-15 4.4E-20 144.9 13.6 129 475-650 13-141 (193)
124 3sb4_A Hypothetical leucine ri 99.6 8.7E-16 3E-20 159.9 13.3 240 350-642 48-328 (329)
125 2o6r_A Variable lymphocyte rec 99.6 2.9E-15 1E-19 140.7 13.3 133 474-652 9-141 (177)
126 2ell_A Acidic leucine-rich nuc 99.6 2E-15 6.9E-20 140.5 11.1 132 55-195 24-160 (168)
127 2ell_A Acidic leucine-rich nuc 99.6 2.4E-15 8.1E-20 140.0 11.5 132 31-171 24-160 (168)
128 3sb4_A Hypothetical leucine ri 99.6 1.4E-15 5E-20 158.3 10.6 101 134-237 226-327 (329)
129 2je0_A Acidic leucine-rich nuc 99.6 3.1E-15 1.1E-19 136.1 10.1 127 55-190 17-148 (149)
130 2je0_A Acidic leucine-rich nuc 99.6 3E-15 1E-19 136.2 9.6 127 31-166 17-148 (149)
131 4fs7_A Uncharacterized protein 99.6 1.6E-13 5.4E-18 146.6 23.7 331 46-476 62-392 (394)
132 4fdw_A Leucine rich hypothetic 99.6 2.3E-13 7.7E-18 144.6 22.5 265 31-318 113-381 (401)
133 2wfh_A SLIT homolog 2 protein 99.6 4.7E-14 1.6E-18 134.1 15.0 108 56-171 32-139 (193)
134 2o6r_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 132.8 14.2 133 353-489 9-141 (177)
135 4fdw_A Leucine rich hypothetic 99.5 3.1E-13 1.1E-17 143.5 22.4 265 5-294 112-382 (401)
136 4fs7_A Uncharacterized protein 99.5 6.1E-13 2.1E-17 142.1 22.5 334 19-453 60-393 (394)
137 1ds9_A Outer arm dynein; leuci 99.5 1.9E-16 6.5E-21 151.8 -4.4 152 447-648 17-185 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.5 5.2E-14 1.8E-18 131.9 10.0 131 398-534 17-153 (176)
139 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-13 4E-18 129.5 11.1 130 375-510 18-153 (176)
140 1ds9_A Outer arm dynein; leuci 99.5 4.9E-16 1.7E-20 148.9 -5.4 86 443-534 43-128 (198)
141 3g39_A Variable lymphocyte rec 99.5 2.5E-13 8.6E-18 126.2 11.4 69 583-651 50-118 (170)
142 2r9u_A Variable lymphocyte rec 99.4 7.1E-13 2.4E-17 123.5 11.6 68 583-650 53-120 (174)
143 3g39_A Variable lymphocyte rec 99.4 3.5E-12 1.2E-16 118.4 13.6 108 7-119 10-117 (170)
144 2r9u_A Variable lymphocyte rec 99.3 8.7E-12 3E-16 116.1 13.6 105 9-118 15-119 (174)
145 3un9_A NLR family member X1; l 99.3 5.6E-14 1.9E-18 147.8 -2.2 62 424-485 72-139 (372)
146 4gt6_A Cell surface protein; l 99.3 4E-10 1.4E-14 120.1 26.7 135 391-533 256-390 (394)
147 4gt6_A Cell surface protein; l 99.3 2.4E-10 8.3E-15 121.8 23.6 156 25-193 57-216 (394)
148 3un9_A NLR family member X1; l 99.3 3.6E-13 1.2E-17 141.7 -1.0 164 55-220 72-253 (372)
149 2ifg_A High affinity nerve gro 99.2 4.3E-11 1.5E-15 125.4 9.7 106 475-626 11-118 (347)
150 2ifg_A High affinity nerve gro 99.1 4E-10 1.4E-14 118.0 11.5 102 11-117 13-116 (347)
151 4h09_A Hypothetical leucine ri 99.0 4.8E-08 1.7E-12 103.4 23.7 128 374-506 215-342 (379)
152 4h09_A Hypothetical leucine ri 99.0 9.9E-08 3.4E-12 101.0 26.0 80 366-447 276-355 (379)
153 2ra8_A Uncharacterized protein 98.9 1.1E-09 3.6E-14 114.1 5.9 154 75-241 168-340 (362)
154 2ra8_A Uncharacterized protein 98.8 4.4E-09 1.5E-13 109.4 6.3 63 135-197 253-322 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 1.4E-07 4.8E-12 88.4 3.9 87 399-485 35-136 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 1.6E-07 5.5E-12 87.9 3.6 121 48-171 29-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 7.5E-08 2.6E-12 94.7 0.0 43 584-628 193-237 (267)
158 3rw6_A Nuclear RNA export fact 98.2 2.9E-07 9.8E-12 90.6 2.0 67 421-489 167-237 (267)
159 3e4g_A ATP synthase subunit S, 98.0 2.8E-06 9.5E-11 77.3 3.6 34 56-89 62-95 (176)
160 3e4g_A ATP synthase subunit S, 97.9 2.1E-06 7.2E-11 78.0 1.5 85 31-115 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00017 6E-09 66.7 1.8 39 399-437 69-111 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00041 1.4E-08 64.3 4.2 84 399-482 40-136 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0015 5E-08 56.5 6.4 59 590-650 11-70 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0064 2.2E-07 52.4 7.3 35 56-90 32-66 (130)
165 2lz0_A Uncharacterized protein 58.6 10 0.00034 30.3 4.2 45 43-88 8-52 (100)
166 2lz0_A Uncharacterized protein 54.3 16 0.00055 29.1 4.7 46 66-113 7-52 (100)
167 2k1k_A Ephrin type-A receptor 23.6 34 0.0012 21.6 1.4 12 688-699 14-25 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.9e-76 Score=688.04 Aligned_cols=630 Identities=32% Similarity=0.442 Sum_probs=545.5
Q ss_pred CCcCEEecCCCCCCCC---CCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCc--ccCCCCC
Q 037651 6 PSIVELHLPNSNLPIL---PIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPD--GFASLNS 80 (750)
Q Consensus 6 ~~L~~L~L~~~~l~~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~ 80 (750)
.+++.|+|+++.+.+. .+ ..+.++++|+.++++.+.+. ..|..|+++++|++|+|++|.+.+.+|. .++++++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~-~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVS-SSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHH-HHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CcEEEEECCCCCcCCccCccC-hhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence 4688999999999884 33 36778899999999988774 3557899999999999999999988888 8999999
Q ss_pred CCEEECcCCCCccccccccc-CCCCCCCEEeCcCcccccccchh---hhccccccCCCCccEEEccCCcCcccCCccccC
Q 037651 81 LQLLDLSGNSFLEGQLSRNL-GTLCNLQTLKLSLNQFRGEVSDF---IDGLSECINSSSLARLELGYNQLTGNLPISLGY 156 (750)
Q Consensus 81 L~~L~Ls~n~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 156 (750)
|++|++++|. +.+..|..+ .++++|++|++++|.+++..+.. +..++ +|++|++++|.+++..|. ..
T Consensus 128 L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~--~~ 198 (768)
T 3rgz_A 128 LKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG------ELKHLAISGNKISGDVDV--SR 198 (768)
T ss_dssp CCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT------TCCEEECCSSEEESCCBC--TT
T ss_pred CCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC------CCCEEECCCCcccccCCc--cc
Confidence 9999999998 566666655 88999999999999999888876 55555 999999999999876654 78
Q ss_pred CCCCcEEEccCCcccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEE
Q 037651 157 LKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEEL 236 (750)
Q Consensus 157 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 236 (750)
+++|++|++++|++.+.+|. ++++++|++|++++|++++.+|..++++++|++|++++|.+.+.++.. .+++|++|
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L 274 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYL 274 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEE
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEE
Confidence 99999999999999988887 999999999999999999999999999999999999999998877762 88999999
Q ss_pred ecccCCCCCceEeccCCCCCC-CceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcC
Q 037651 237 SLIKTSNSSLSFNISFDWIPP-FKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVG 315 (750)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~ 315 (750)
++++| .+.+.++..+... ++|++|++++|.+.+..|.+++.+++|++|++++|.+.+.+|......+++|++|+++
T Consensus 275 ~L~~n---~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 275 SLAEN---KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp ECCSS---EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred ECcCC---ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 99985 4555666666554 8999999999999999999999999999999999999988888755556899999999
Q ss_pred CCcCCCcCCCcccc-C-CCceEECCCCCCCCCCCCC-----CCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcC
Q 037651 316 GNHLSGRIPNTLVF-R-FPGSVDLSSNRFEGPLPLW-----SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSL 388 (750)
Q Consensus 316 ~n~l~~~~~~~~~~-~-~l~~l~l~~n~l~~~~~~~-----~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l 388 (750)
+|++++.+|..+.. . .++.+++++|.+.+.+|.. +++|++|++++|.+++.+|..+.. +++|++|++++|++
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYL 430 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcc
Confidence 99999888887653 3 8999999999998877764 457999999999999888887765 89999999999999
Q ss_pred cccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccc
Q 037651 389 NGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSL 468 (750)
Q Consensus 389 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 468 (750)
++.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEE---------------------
Q 037651 469 KNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILD--------------------- 527 (750)
Q Consensus 469 ~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~--------------------- 527 (750)
..+++|++|++++|++++.+|..+.. +++|+.|++++|++.|.+|..+.....+..++
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGG-CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcC-CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 99999999999999999999998876 99999999999999999998776655444333
Q ss_pred -------------------------cccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchh
Q 037651 528 -------------------------LSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVE 582 (750)
Q Consensus 528 -------------------------Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 582 (750)
++.|.++|.+|..+++++.++. ..+.++...+.+|.+
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~------------------LdLs~N~l~g~ip~~ 651 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF------------------LDMSYNMLSGYIPKE 651 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE------------------EECCSSCCBSCCCGG
T ss_pred cccccccccccchhhhccccccccccccceecccCchhhhccccccE------------------EECcCCcccccCCHH
Confidence 2334455555555555444432 233334444568889
Q ss_pred hhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceecCCCCCCCCCccc
Q 037651 583 LTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGEIPTANQFQTSLI 662 (750)
Q Consensus 583 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~ 662 (750)
++++++|+.|+|++|+++|.+|+.++++++|++|||++|+++|.+|..+..+++|++||+|+|+++|.||.++++.++..
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~ 731 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCG
T ss_pred HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCC
Q 037651 663 RQFMRIPGADE 673 (750)
Q Consensus 663 ~~~~~n~~~~~ 673 (750)
.+|.|||+.|.
T Consensus 732 ~~~~gN~~Lcg 742 (768)
T 3rgz_A 732 AKFLNNPGLCG 742 (768)
T ss_dssp GGGCSCTEEES
T ss_pred HHhcCCchhcC
Confidence 99999987653
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-70 Score=641.68 Aligned_cols=605 Identities=32% Similarity=0.443 Sum_probs=531.2
Q ss_pred CCCcEEECCCCCCCCC---ccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCccccccc--ccCCCCC
Q 037651 31 TSLQVLDLSNNGFNST---IPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSR--NLGTLCN 105 (750)
Q Consensus 31 ~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~--~l~~l~~ 105 (750)
.+++.|+|+++.+.+. ++.++.++++|+.++++.+.+. .+|..|+++++|++|+|++|. +.+.+|. .++++++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNS-LSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSE-EEEEGGGGGGGGGCTT
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCc-CCCcCCChHHHhCCCC
Confidence 6799999999999987 8889999999999999999876 467889999999999999999 7777787 8999999
Q ss_pred CCEEeCcCcccccccchhh-hccccccCCCCccEEEccCCcCcccCCcc---ccCCCCCcEEEccCCcccccCCccccCC
Q 037651 106 LQTLKLSLNQFRGEVSDFI-DGLSECINSSSLARLELGYNQLTGNLPIS---LGYLKNLRYLELWYNSFLGSIPPSIGNL 181 (750)
Q Consensus 106 L~~L~Ls~n~l~~~~~~~l-~~l~~~~~~~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~l 181 (750)
|++|++++|.+.+..|..+ ..++ +|++|++++|.+++..|.. +.++++|++|++++|.+.+..|. .++
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l 199 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLN------SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRC 199 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCT------TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTC
T ss_pred CCEEECcCCccCCcCCHHHhccCC------CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccC
Confidence 9999999999998877655 5555 9999999999999888877 88999999999999999976654 889
Q ss_pred CCCCeeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCcee
Q 037651 182 TFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLR 261 (750)
Q Consensus 182 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 261 (750)
++|++|++++|++++.+|. ++++++|++|++++|.+++.++. .+.++++|++|++++|.. .+..+.. .+.+|+
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l---~~~~~~~--~l~~L~ 272 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQF---VGPIPPL--PLKSLQ 272 (768)
T ss_dssp TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCC---EESCCCC--CCTTCC
T ss_pred CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcc---cCccCcc--ccCCCC
Confidence 9999999999999988877 99999999999999999987766 799999999999999643 3333332 778999
Q ss_pred EEEeccccCCCCCChhhccC-CcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCc--cccCCCceEECC
Q 037651 262 YLVIRYYQLGPKFPTWLRNQ-TELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNT--LVFRFPGSVDLS 338 (750)
Q Consensus 262 ~L~l~~~~~~~~~p~~l~~~-~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~~l~~l~l~ 338 (750)
+|++++|.+.+.+|.++... ++|++|++++|.+.+.+|..+... ++|++|++++|+++|.+|.. ...+.++.++++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC-SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC-TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC-CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 99999999999999998775 999999999999999999988764 79999999999999888864 345689999999
Q ss_pred CCCCCCCCCCCC---C-CCcEEEeecccccCCCCcchhcc-CCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccc
Q 037651 339 SNRFEGPLPLWS---S-NLTKLYLRDNLFSGPIPNDLGQK-TPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLS 413 (750)
Q Consensus 339 ~n~l~~~~~~~~---~-~L~~L~l~~n~l~~~i~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 413 (750)
+|.+.+.+|..+ + +|++|++++|.+++.+|..+... +++|++|++++|.+++.+|..++.+++|++|++++|.++
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 999999888763 3 89999999999998888876542 678999999999999999999999999999999999999
Q ss_pred cccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhh
Q 037651 414 GGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIG 493 (750)
Q Consensus 414 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 493 (750)
+.+|..+..+++|++|++++|++.+.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.++.
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCC-ccc------------cC-
Q 037651 494 ESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDT-EIY------------QG- 559 (750)
Q Consensus 494 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~-~~~------------~~- 559 (750)
. +++|++|++++|++++.+|..++.+++|+.||+++|+++|.+|..+.+...+....... ..+ ..
T Consensus 512 ~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 512 R-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp G-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred c-CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 6 99999999999999999999999999999999999999999999887765553321110 000 00
Q ss_pred ceEEEEecc--------------eEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCc
Q 037651 560 SLQVAIKGT--------------QYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSG 625 (750)
Q Consensus 560 ~~~~~~~~~--------------~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 625 (750)
.....+.+. .+..+...+.+|..++.+++|+.|||++|+++|.+|..+++++.|+.|||++|+++|
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence 000000000 000011223477788999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCeEECcCCcceecCCCC
Q 037651 626 SIPPSMVSIRFLSFLNLSFNNLSGEIPTA 654 (750)
Q Consensus 626 ~~p~~l~~l~~L~~l~ls~N~l~g~ip~~ 654 (750)
.+|..++.+++|++||+|+|+++|.||..
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 99999999999999999999999999964
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.7e-60 Score=546.07 Aligned_cols=588 Identities=21% Similarity=0.220 Sum_probs=480.0
Q ss_pred cCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECc
Q 037651 8 IVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLS 87 (750)
Q Consensus 8 L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 87 (750)
-+.+++++++++.+|...+ +++++|+|++|.+++..+..|.++++|++|++++|.+.+..|.+|+++++|++|+++
T Consensus 6 ~~~~~cs~~~L~~ip~~~~----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLP----TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp SSEEECCSSCCSSCCSCSC----TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred CCeeECCCCCccccccccC----CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence 4679999999999886222 799999999999998888889999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccC
Q 037651 88 GNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWY 167 (750)
Q Consensus 88 ~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 167 (750)
+|. +....+..|+++++|++|++++|.+++..+..++.++ +|++|++++|.+++..|..++++++|++|++++
T Consensus 82 ~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 82 HNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK------NLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp SSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT------TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred CCc-cCccChhhhccCCCCCEEECCCCccCccChhHccccC------CCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence 999 5544445799999999999999999988888888887 999999999999988888999999999999999
Q ss_pred CcccccCCcccc--CCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCccccChhh--hcCCCCCCEEecccCCC
Q 037651 168 NSFLGSIPPSIG--NLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAH--LRNLTSLEELSLIKTSN 243 (750)
Q Consensus 168 n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--l~~l~~L~~L~l~~~~~ 243 (750)
|.+++..+..+. .+++|++|++++|.+++..|..+..+++|+.|++.++.+.+...... .-..++|++|++++|.
T Consensus 155 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~- 233 (680)
T 1ziw_A 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ- 233 (680)
T ss_dssp SCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-
T ss_pred CcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc-
Confidence 999977776554 56899999999999999889999999999999999998764322111 1135789999999854
Q ss_pred CCceEeccCCCCCCC--ceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCC
Q 037651 244 SSLSFNISFDWIPPF--KLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSG 321 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 321 (750)
+.+..+..+..+. +|+.|++++|.+.+..|.++..+++|++|++++|.+.+..|..+.. +++|++|++++|...+
T Consensus 234 --l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 234 --LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp --CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT-CTTCCEEECTTCBCCC
T ss_pred --ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC-CCCccEEeccchhhhc
Confidence 3444444555444 4999999999999888999999999999999999999888877655 4799999999876654
Q ss_pred cC-----CC-----ccccCCCceEECCCCCCCCCCCCC---CCCCcEEEeecccccCC-CCcchhcc--CCCCCEEecCC
Q 037651 322 RI-----PN-----TLVFRFPGSVDLSSNRFEGPLPLW---SSNLTKLYLRDNLFSGP-IPNDLGQK--TPFLTDLDISF 385 (750)
Q Consensus 322 ~~-----~~-----~~~~~~l~~l~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~-i~~~~~~~--~~~L~~L~ls~ 385 (750)
.+ |. ....+.++.+++++|.+.+..+.. +++|++|++++|.+... ++...+.. .++|+.|++++
T Consensus 311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~ 390 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTT
T ss_pred ccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCC
Confidence 32 21 123457888888888888876653 46788888888875422 33322221 35788899999
Q ss_pred CcCcccCCcCCcCCCCCCeEECccCccccccC-ccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCc--C
Q 037651 386 NSLNGSIPQSVGNLKQLLTLVISNNNLSGGIP-QFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLS--G 462 (750)
Q Consensus 386 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~ 462 (750)
|++++..|.++..+++|++|++++|.+.+.+| ..+.++++|++|++++|++.+..+..+..+++|+.|++++|.++ +
T Consensus 391 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 470 (680)
T 1ziw_A 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred CCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccc
Confidence 98888888888888889999999888877555 67888888999999999888777888888888999999888876 5
Q ss_pred CCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecC--------ccccCCCCCcEEEcccCcCC
Q 037651 463 EIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIP--------SELCKLSALHILDLSHNNLS 534 (750)
Q Consensus 463 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p--------~~l~~l~~L~~L~Ls~n~l~ 534 (750)
..|..|..+++|+.|++++|+++ .+|...+.++++|++|++++|++++..+ ..+..+++|++|+|++|+++
T Consensus 471 ~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 549 (680)
T 1ziw_A 471 SSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549 (680)
T ss_dssp CSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred cCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence 67888888888999999998888 4555544458889999999988875422 23678888899999988887
Q ss_pred CcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCc
Q 037651 535 GPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLE 614 (750)
Q Consensus 535 ~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 614 (750)
.+|. ..|.++++|+.|+|++|++++..+..|..+++|+
T Consensus 550 -~i~~-----------------------------------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 587 (680)
T 1ziw_A 550 -EIPV-----------------------------------------EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587 (680)
T ss_dssp -CCCT-----------------------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred -CCCH-----------------------------------------HHcccccCcceeECCCCCCCcCCHhHhCCCCCCC
Confidence 3332 2467788899999999999977777789999999
Q ss_pred EEEccCCccCcCCCcccc-CCCCCCeEECcCCcceecCCC
Q 037651 615 SLDLSRNKLSGSIPPSMV-SIRFLSFLNLSFNNLSGEIPT 653 (750)
Q Consensus 615 ~L~Ls~N~l~~~~p~~l~-~l~~L~~l~ls~N~l~g~ip~ 653 (750)
.|++++|++++..|..+. .+++|+++++++|++.|..+.
T Consensus 588 ~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp EEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred EEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999988887776 788999999999999887653
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.8e-58 Score=529.27 Aligned_cols=592 Identities=22% Similarity=0.154 Sum_probs=486.2
Q ss_pred cEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCcC
Q 037651 34 QVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSL 113 (750)
Q Consensus 34 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~ 113 (750)
+.++.++++++. +|..+. +++++|++++|.+++..+.+|.++++|++|++++|. +.+..|..++++++|++|++++
T Consensus 7 ~~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCS
T ss_pred CeeECCCCCccc-cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCC
Confidence 679999999974 565554 799999999999998888889999999999999999 6777788899999999999999
Q ss_pred cccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeeccccc
Q 037651 114 NQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQ 193 (750)
Q Consensus 114 n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 193 (750)
|.+++..+..|+.++ +|++|++++|++++..|..|+++++|++|++++|.+.+..|..++++++|++|++++|.
T Consensus 83 n~l~~l~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 83 NELSQLSDKTFAFCT------NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp SCCCCCCTTTTTTCT------TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred CccCccChhhhccCC------CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 999987777888887 99999999999997777899999999999999999999889999999999999999999
Q ss_pred CCcccchhcc--CCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEeccccCC
Q 037651 194 MNGKFPESFG--QLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLG 271 (750)
Q Consensus 194 l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (750)
+++..+..+. .+++|+.|++++|.+++..+. .+..+++|+.+++.++.................+|+.|++++|.+.
T Consensus 157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~ 235 (680)
T 1ziw_A 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235 (680)
T ss_dssp CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred ccccCHHHhhccccccccEEECCCCcccccChh-hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc
Confidence 9987776654 568999999999999885554 7899999999999875431100000000113468999999999999
Q ss_pred CCCChhhccCCc--ccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCcc-ccCCCceEECCCCCCCCC---
Q 037651 272 PKFPTWLRNQTE--LTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTL-VFRFPGSVDLSSNRFEGP--- 345 (750)
Q Consensus 272 ~~~p~~l~~~~~--L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~l~~l~l~~n~l~~~--- 345 (750)
+..|.++..++. |++|++++|.+.+..|..+.. +++|++|++++|.+++..|..+ ....++.+++++|...+.
T Consensus 236 ~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 314 (680)
T 1ziw_A 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314 (680)
T ss_dssp EECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----
T ss_pred ccChhHhhccCcCCCCEEECCCCCcCccCcccccC-cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc
Confidence 999999988865 999999999999887777655 4799999999999998877655 356899999998765542
Q ss_pred --CC-------CCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcc--cCCcCCcCC--CCCCeEECccCcc
Q 037651 346 --LP-------LWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNG--SIPQSVGNL--KQLLTLVISNNNL 412 (750)
Q Consensus 346 --~~-------~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~--~~~~~~~~l--~~L~~L~L~~n~l 412 (750)
+| ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.. ..+..|..+ ++|+.|++++|++
T Consensus 315 ~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393 (680)
T ss_dssp --CCEECTTTTTTCTTCCEEECCSCCBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred ccccccChhhcccCCCCCEEECCCCccCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence 22 236789999999999986444 444559999999999997542 223334333 5899999999999
Q ss_pred ccccCccccCCCCCCEEeCCCCccceeCC-ccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCccc--ccCC
Q 037651 413 SGGIPQFLKNISSLYILDMTKNNFSGEIP-ESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLS--GNIP 489 (750)
Q Consensus 413 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~p 489 (750)
.+..|..+..+++|++|++++|++.+.+| ..+..+++|++|++++|++++..+..|..+++|+.|++++|.+. +.+|
T Consensus 394 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p 473 (680)
T 1ziw_A 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence 98889999999999999999999987776 67888999999999999999888889999999999999999886 4677
Q ss_pred hhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecce
Q 037651 490 AWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQ 569 (750)
Q Consensus 490 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 569 (750)
..+.. +++|+.|++++|++++..|..+..+++|++|++++|++++..+..+..
T Consensus 474 ~~~~~-l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------- 526 (680)
T 1ziw_A 474 SPFQP-LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG-------------------------- 526 (680)
T ss_dssp CTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT--------------------------
T ss_pred ccccc-CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccC--------------------------
Confidence 77665 999999999999999777778999999999999999988543221110
Q ss_pred EeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCccee
Q 037651 570 YVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSG 649 (750)
Q Consensus 570 ~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g 649 (750)
..+..+.++++|++|+|++|+++...+..|+++++|+.||+++|++++..|..|..+++|++|++++|++++
T Consensus 527 --------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 527 --------GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp --------SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred --------CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 011247889999999999999995555679999999999999999998777778999999999999999998
Q ss_pred cCCCCC--CCCCcccccccCCCCCCC
Q 037651 650 EIPTAN--QFQTSLIRQFMRIPGADE 673 (750)
Q Consensus 650 ~ip~~~--~~~~~~~~~~~~n~~~~~ 673 (750)
..|..- .+.........+||-.|+
T Consensus 599 ~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 599 VEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred cChhHhcccccccCEEEccCCCcccC
Confidence 765421 233444445678886653
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.8e-56 Score=509.29 Aligned_cols=540 Identities=23% Similarity=0.209 Sum_probs=415.3
Q ss_pred cCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECc
Q 037651 8 IVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLS 87 (750)
Q Consensus 8 L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 87 (750)
-+.+++++.+++.+|.. + .+++++|+|++|.+++..|..|.++++|++|+|++|++.+..|.+|+++++|++|+++
T Consensus 14 ~~~~~c~~~~l~~iP~~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGT--L--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TTEEECTTSCCSSCCTT--S--CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCcccCcCC--C--CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence 45788999999988862 2 2589999999999998888899999999999999999998889999999999999999
Q ss_pred CCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccC
Q 037651 88 GNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWY 167 (750)
Q Consensus 88 ~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 167 (750)
+|. +.+..|..|+++++|++|++++|.+++..+..++.++ +|++|++++|.+++..+..+..+++|++|++++
T Consensus 90 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 162 (606)
T 3t6q_A 90 ANP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK------TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162 (606)
T ss_dssp TCC-CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT------TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS
T ss_pred CCc-ccccChhhhcccccccEeeccccCcccCCcchhccCC------cccEEECCCCcccccCcccccCCcccCEEEccc
Confidence 999 6666788899999999999999999987777777776 999999999999864444555599999999999
Q ss_pred CcccccCCccccCCCCCC--eeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCC
Q 037651 168 NSFLGSIPPSIGNLTFLE--ELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSS 245 (750)
Q Consensus 168 n~l~~~~p~~l~~l~~L~--~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~ 245 (750)
|.+.+..|..++.+++|+ +|++++|.+++..|..+. ..+|+.|++++|.. ++. .+..+.++....+.......
T Consensus 163 n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~---~~~-~~~~l~~~~l~~l~~~~~~~ 237 (606)
T 3t6q_A 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQN---LLV-IFKGLKNSTIQSLWLGTFED 237 (606)
T ss_dssp SCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSC---HHH-HHHHTTTCEEEEEECCCCTT
T ss_pred CcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchh---HHH-Hhhhccccchhheechhhcc
Confidence 999988888889999999 899999999977666554 46899999998862 222 44445444333322211100
Q ss_pred ceEeccCCCCCCCceeEEEeccccCCCCCChhhccCC--cccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcC
Q 037651 246 LSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQT--ELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRI 323 (750)
Q Consensus 246 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~--~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 323 (750)
.. .....+..+..+. +|+.|++++|.+.+..+..+.. +++|++|++++|+++ .+
T Consensus 238 ~~----------------------~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~-~l 293 (606)
T 3t6q_A 238 MD----------------------DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC-FSGLQELDLTATHLS-EL 293 (606)
T ss_dssp SC----------------------CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTT-CTTCSEEECTTSCCS-CC
T ss_pred cc----------------------ccccChhHhchhhcCceeEEEeecCccCccCHHHhcc-ccCCCEEeccCCccC-CC
Confidence 00 0011122222222 5566666666665554444433 356666666666655 33
Q ss_pred CCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCc-CCcCCCCC
Q 037651 324 PNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQ-SVGNLKQL 402 (750)
Q Consensus 324 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L 402 (750)
|..+.. +++|++|++++|.+++..|..+. .+++|++|++++|.+.+.++. .+..+++|
T Consensus 294 p~~l~~--------------------l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 294 PSGLVG--------------------LSTLKKLVLSANKFENLCQISAS-NFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp CSSCCS--------------------CTTCCEEECTTCCCSBGGGGCGG-GCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred Chhhcc--------------------cccCCEEECccCCcCcCchhhhh-ccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 332211 46777888888877744444443 488888888888888765554 47888888
Q ss_pred CeEECccCcccccc--CccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCc-cccCCCCCCEEec
Q 037651 403 LTLVISNNNLSGGI--PQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPP-SLKNCSLMDSLDL 479 (750)
Q Consensus 403 ~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 479 (750)
++|++++|.+.+.. +..+..+++|++|++++|++.+..|..+..+++|+.|++++|++++..+. .+..+++|++|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 88888888888665 67788888999999999988888888888888999999999988876654 4888899999999
Q ss_pred CCCcccccCChhhhhcCCCCCEEEccCccceee---cCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCcc
Q 037651 480 GENQLSGNIPAWIGESMPSLSILRLRSNHFNGT---IPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEI 556 (750)
Q Consensus 480 ~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~ 556 (750)
++|.+.+..|..+.. +++|++|++++|++.+. .+..+..+++|++|++++|++++..|.
T Consensus 433 ~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------------- 494 (606)
T 3t6q_A 433 SHSLLDISSEQLFDG-LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH----------------- 494 (606)
T ss_dssp TTCCCBTTCTTTTTT-CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT-----------------
T ss_pred CCCccCCcCHHHHhC-CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh-----------------
Confidence 999988666666554 88999999999988762 235688899999999999998865554
Q ss_pred ccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCC
Q 037651 557 YQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRF 636 (750)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 636 (750)
.++.+++|++|+|++|++++.+|+.+.+++.| .|++++|++++..|..+..+++
T Consensus 495 -------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 495 -------------------------AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ 548 (606)
T ss_dssp -------------------------TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred -------------------------hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCC
Confidence 46677888999999999999999999999999 9999999999988888899999
Q ss_pred CCeEECcCCcceecCC
Q 037651 637 LSFLNLSFNNLSGEIP 652 (750)
Q Consensus 637 L~~l~ls~N~l~g~ip 652 (750)
|+++++++|++.|.++
T Consensus 549 L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 549 QRTINLRQNPLDCTCS 564 (606)
T ss_dssp SSEEECTTCCEECSGG
T ss_pred CCEEeCCCCCccccCC
Confidence 9999999999998655
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-55 Score=504.36 Aligned_cols=540 Identities=21% Similarity=0.205 Sum_probs=444.4
Q ss_pred cCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECc
Q 037651 8 IVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLS 87 (750)
Q Consensus 8 L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 87 (750)
-+.+++++++++.+|... .+++++|+|++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 13 ~~~~~c~~~~l~~ip~~~----~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI----PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCSSCCTTS----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCcccCCCCC----CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 467999999999998732 2899999999999998888899999999999999999998889999999999999999
Q ss_pred CCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcc-cCCccccCCCCCcEEEcc
Q 037651 88 GNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLELW 166 (750)
Q Consensus 88 ~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~ 166 (750)
+|. +.+..|..|+++++|++|++++|.+++..+..++.++ +|++|++++|.+++ .+|..++++++|++|+++
T Consensus 89 ~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 89 GNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI------TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp TCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT------TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred CCc-ccccChhhcCCcccCCEEEccCCccccccccccCCCC------CCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence 999 6667789999999999999999999988878888877 99999999999986 579999999999999999
Q ss_pred CCcccccCCccccCCCCCC----eeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCC
Q 037651 167 YNSFLGSIPPSIGNLTFLE----ELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTS 242 (750)
Q Consensus 167 ~n~l~~~~p~~l~~l~~L~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~ 242 (750)
+|++++..|..++.+++|+ +|++++|.+++..+..+.. .+|+.|++++|.+.+......+.+++.++.+++....
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~ 240 (606)
T 3vq2_A 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240 (606)
T ss_dssp SSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccc
Confidence 9999998888888877765 8999999999665555544 4999999999999865666688999999988876532
Q ss_pred CCCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEc-CCCCcCCCcChHHHhhcCCCcEEEcCCCcCCC
Q 037651 243 NSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVL-NGASISDTLPSWFWQLNLTLDELDVGGNHLSG 321 (750)
Q Consensus 243 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L-~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 321 (750)
..... .+.. +....+..+..+ .++.+++ ..+.+.+..|. ...+++|+.|++++|.+.
T Consensus 241 ~~~~~-----------~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~- 298 (606)
T 3vq2_A 241 FKDER-----------NLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIK- 298 (606)
T ss_dssp CTTSC-----------CCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCC-
T ss_pred cccCC-----------cccc-------cChHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccch-
Confidence 21100 0000 000111111222 3455555 44555555554 233456666666666654
Q ss_pred cCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCC
Q 037651 322 RIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQ 401 (750)
Q Consensus 322 ~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 401 (750)
.+| .+. .+++|++|++++|.+ +.+|. + .+++|++|++++|+..+.. .+..+++
T Consensus 299 ~l~-~l~--------------------~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~~~--~~~~l~~ 351 (606)
T 3vq2_A 299 YLE-DVP--------------------KHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMNKGSISF--KKVALPS 351 (606)
T ss_dssp CCC-CCC--------------------TTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESCSSCEEC--CCCCCTT
T ss_pred hhh-hcc--------------------ccccCCEEEcccccC-ccccc-C--CCCccceeeccCCcCccch--hhccCCC
Confidence 222 111 156899999999999 58884 3 5999999999999765544 5678999
Q ss_pred CCeEECccCccccc--cCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCC-ccccCCCCCCEEe
Q 037651 402 LLTLVISNNNLSGG--IPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIP-PSLKNCSLMDSLD 478 (750)
Q Consensus 402 L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 478 (750)
|++|++++|.+++. .|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++++..| ..+..+++|++|+
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence 99999999999876 3788999999999999999998 467889999999999999999998877 6899999999999
Q ss_pred cCCCcccccCChhhhhcCCCCCEEEccCcccee-ecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccc
Q 037651 479 LGENQLSGNIPAWIGESMPSLSILRLRSNHFNG-TIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIY 557 (750)
Q Consensus 479 L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~ 557 (750)
+++|++.+..|..+.. +++|++|++++|++.+ .+|..+..+++|++|++++|++++..|.
T Consensus 431 l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------------ 491 (606)
T 3vq2_A 431 ISYTNTKIDFDGIFLG-LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG------------------ 491 (606)
T ss_dssp CTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT------------------
T ss_pred CcCCCCCccchhhhcC-CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh------------------
Confidence 9999999877777765 9999999999999997 4798999999999999999999876554
Q ss_pred cCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCC-C
Q 037651 558 QGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIR-F 636 (750)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~ 636 (750)
.++.+++|++|+|++|++++.+|..++.+++|+.||+++|+++ .+|..+..++ +
T Consensus 492 ------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~ 546 (606)
T 3vq2_A 492 ------------------------VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKS 546 (606)
T ss_dssp ------------------------TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTT
T ss_pred ------------------------hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhccc
Confidence 4667888999999999999999999999999999999999999 6888898887 6
Q ss_pred CCeEECcCCcceecCCC
Q 037651 637 LSFLNLSFNNLSGEIPT 653 (750)
Q Consensus 637 L~~l~ls~N~l~g~ip~ 653 (750)
|+++++++|++.|..|.
T Consensus 547 L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 547 LAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCEEECCSCCCCCSSTT
T ss_pred CcEEEccCCCcccCCcc
Confidence 99999999999987664
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.8e-55 Score=498.41 Aligned_cols=524 Identities=19% Similarity=0.156 Sum_probs=442.7
Q ss_pred CCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEE
Q 037651 6 PSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLD 85 (750)
Q Consensus 6 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 85 (750)
+++++|++++|.++++++ ..+.++++|++|+|++|.+++..|..|.++++|++|+|++|.+.+..|.+|+++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 469999999999999977 6889999999999999999998899999999999999999999988899999999999999
Q ss_pred CcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCc--EE
Q 037651 86 LSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLR--YL 163 (750)
Q Consensus 86 Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L 163 (750)
+++|. +....+..++++++|++|++++|.+.+.....+..++ +|++|++++|.+++..|..++.+++|+ .|
T Consensus 112 L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 112 FIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE------KLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp CTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCT------TCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred ccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCc------ccCEEEcccCcccccChhhhhhhcccceeEE
Confidence 99999 5555577899999999999999999985544444455 999999999999988888999999999 99
Q ss_pred EccCCcccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCC
Q 037651 164 ELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSN 243 (750)
Q Consensus 164 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~ 243 (750)
++++|.+.+..|..+. ..+|++|++++|. ..+..+..+.+++...+....+.+ +....+..
T Consensus 185 ~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~------------~~~~~i~~--- 245 (606)
T 3t6q_A 185 NLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFED------------MDDEDISP--- 245 (606)
T ss_dssp ECTTCCCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTT------------SCCCCCCG---
T ss_pred ecCCCccCccChhHhh-hccccccccCCch---hHHHHhhhccccchhheechhhcc------------ccccccCh---
Confidence 9999999988777665 4789999999997 345566666665555444333221 11111111
Q ss_pred CCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcC
Q 037651 244 SSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRI 323 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 323 (750)
..... ....+++.+++++|.+.+..+..+..+++|++|++++|.++ .+|..+.. +++|++|++++|.+++..
T Consensus 246 -----~~~~~-l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~ 317 (606)
T 3t6q_A 246 -----AVFEG-LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLC 317 (606)
T ss_dssp -----GGGGG-GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGG
T ss_pred -----hHhch-hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCc
Confidence 01111 11126888899999888888888999999999999999988 56665543 478999999999998766
Q ss_pred CCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccC--CcCCcCCCC
Q 037651 324 PNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSI--PQSVGNLKQ 401 (750)
Q Consensus 324 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~--~~~~~~l~~ 401 (750)
|..+.. +++|++|++++|.+.+.+|...+..+++|++|++++|.+.+.. +..+..+++
T Consensus 318 ~~~~~~--------------------l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 377 (606)
T 3t6q_A 318 QISASN--------------------FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377 (606)
T ss_dssp GGCGGG--------------------CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTT
T ss_pred hhhhhc--------------------cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCC
Confidence 654432 6789999999999888888877777999999999999998776 788999999
Q ss_pred CCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCcc-ccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecC
Q 037651 402 LLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPES-IGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLG 480 (750)
Q Consensus 402 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 480 (750)
|++|++++|.+.+..|..+..+++|++|++++|++.+..+.. +..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 457 (606)
T 3t6q_A 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457 (606)
T ss_dssp CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECC
Confidence 999999999999888999999999999999999999776654 8899999999999999998889999999999999999
Q ss_pred CCccccc-CC--hhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccc
Q 037651 481 ENQLSGN-IP--AWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIY 557 (750)
Q Consensus 481 ~n~~~~~-~p--~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~ 557 (750)
+|++.+. +| ..+. .+++|++|++++|++++..|..+..+++|+.|++++|++++..|.
T Consensus 458 ~n~l~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------ 518 (606)
T 3t6q_A 458 GNHFPKGNIQKTNSLQ-TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE------------------ 518 (606)
T ss_dssp TCBCGGGEECSSCGGG-GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG------------------
T ss_pred CCCCCccccccchhhc-cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh------------------
Confidence 9999862 22 3444 499999999999999999999999999999999999999876554
Q ss_pred cCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCC
Q 037651 558 QGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIP 628 (750)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 628 (750)
.+.+++.| .|++++|++++.+|..++.+++|+.|++++|++.+..+
T Consensus 519 ------------------------~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 519 ------------------------ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp ------------------------GGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ------------------------HhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 56778889 99999999999999999999999999999999987655
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-54 Score=510.94 Aligned_cols=537 Identities=22% Similarity=0.211 Sum_probs=388.8
Q ss_pred CEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccC-CcccCCCCCCCEEECc
Q 037651 9 VELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDI-PDGFASLNSLQLLDLS 87 (750)
Q Consensus 9 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls 87 (750)
+..+.++++++.+|. ..+++++|||++|.+++..+..|.++++|++|+|++|...+.+ |.+|+++++|++|+|+
T Consensus 7 ~~~dcs~~~L~~vP~-----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS-----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC-----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 467889999999875 3479999999999999888999999999999999999655454 7899999999999999
Q ss_pred CCCCcccccccccCCCCCCCEEeCcCcccccccchh--hhccccccCCCCccEEEccCCcCcccCC-ccccCCCCCcEEE
Q 037651 88 GNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDF--IDGLSECINSSSLARLELGYNQLTGNLP-ISLGYLKNLRYLE 164 (750)
Q Consensus 88 ~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~ 164 (750)
+|. +.+..|.+|+++++|++|++++|.+++..+.. ++.++ +|++|++++|.+++..+ ..|+++++|++|+
T Consensus 82 ~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~------~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 82 SSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK------ALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154 (844)
T ss_dssp TCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS------SCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred CCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC------CCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence 999 66677899999999999999999999866554 77776 99999999999987654 5799999999999
Q ss_pred ccCCcccccCCccccCC--CCCCeeecccccCCcccchhccCCCC------CCEEEcccCcCccccChhhhcC--CCCCC
Q 037651 165 LWYNSFLGSIPPSIGNL--TFLEELYLTSNQMNGKFPESFGQLSA------IRVLELSDNQWEGFITEAHLRN--LTSLE 234 (750)
Q Consensus 165 L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~l~~--l~~L~ 234 (750)
+++|.+.+..+..+..+ ++|++|++++|.+.+..|..++.+++ |+.|++++|.+++.++...... ..+++
T Consensus 155 Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp EESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred CCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence 99999998888888887 89999999999999888887777766 9999999998887666532222 24566
Q ss_pred EEecccCCCCCceEeccCCCCCCCceeEEEeccccCCCCCChhhccC--CcccEEEcCCCCcCCCcChHHHhhcCCCcEE
Q 037651 235 ELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQ--TELTTLVLNGASISDTLPSWFWQLNLTLDEL 312 (750)
Q Consensus 235 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~--~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L 312 (750)
.+.+..+.... ....+.+....+..+..+ ++|+.|++++|.+.+..|..+.. +++|+.|
T Consensus 235 ~L~l~~~~~~~------------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L 295 (844)
T 3j0a_A 235 SLILAHHIMGA------------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET-LKDLKVL 295 (844)
T ss_dssp EEECCSSCCBC------------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS-CCCCCEE
T ss_pred ceecccccccc------------------cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc-CCCCCEE
Confidence 66665321100 001111112222223222 44555555555554443333322 2445555
Q ss_pred EcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccC
Q 037651 313 DVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSI 392 (750)
Q Consensus 313 ~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~ 392 (750)
++++|++++..|..+.. +++|++|++++|.+++..|..+. .+++|++|++++|++.+..
T Consensus 296 ~L~~n~i~~~~~~~~~~--------------------l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~ 354 (844)
T 3j0a_A 296 NLAYNKINKIADEAFYG--------------------LDNLQVLNLSYNLLGELYSSNFY-GLPKVAYIDLQKNHIAIIQ 354 (844)
T ss_dssp EEESCCCCEECTTTTTT--------------------CSSCCEEEEESCCCSCCCSCSCS-SCTTCCEEECCSCCCCCCC
T ss_pred ECCCCcCCCCChHHhcC--------------------CCCCCEEECCCCCCCccCHHHhc-CCCCCCEEECCCCCCCccC
Confidence 55555544433322211 45677777777777644444433 4777777777777777776
Q ss_pred CcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCC-ccccCC
Q 037651 393 PQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIP-PSLKNC 471 (750)
Q Consensus 393 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l 471 (750)
+..|..+++|++|++++|.+++. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++++... ..+.++
T Consensus 355 ~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l 425 (844)
T 3j0a_A 355 DQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRV 425 (844)
T ss_dssp SSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred hhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcC
Confidence 77777777788888887777632 22667777888887777 44443 4567778888887775322 234577
Q ss_pred CCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccce-----eecCccccCCCCCcEEEcccCcCCCcCCcccccccc
Q 037651 472 SLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFN-----GTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSA 546 (750)
Q Consensus 472 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 546 (750)
++|+.|++++|++++..+......+++|+.|++++|.+. +..|..+..+++|+.|+|++|++++..|.
T Consensus 426 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------- 498 (844)
T 3j0a_A 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG------- 498 (844)
T ss_dssp TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTT-------
T ss_pred CccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChh-------
Confidence 778888888887774433333334677888888888776 33345577778888888888887765443
Q ss_pred CccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcC
Q 037651 547 MKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGS 626 (750)
Q Consensus 547 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 626 (750)
.+.++++|++|+|++|++++..|..+. ++|+.||+++|++++.
T Consensus 499 -----------------------------------~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~ 541 (844)
T 3j0a_A 499 -----------------------------------VFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP 541 (844)
T ss_dssp -----------------------------------SSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC
T ss_pred -----------------------------------HccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCC
Confidence 466788899999999999987777766 8999999999999999
Q ss_pred CCccccCCCCCCeEECcCCcceecCCC
Q 037651 627 IPPSMVSIRFLSFLNLSFNNLSGEIPT 653 (750)
Q Consensus 627 ~p~~l~~l~~L~~l~ls~N~l~g~ip~ 653 (750)
+|..+ .+|+.+++++|++.|.++.
T Consensus 542 ~~~~~---~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 542 NPDVF---VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred ChhHh---CCcCEEEecCCCccccccc
Confidence 88776 4788999999999887653
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.5e-53 Score=482.10 Aligned_cols=519 Identities=21% Similarity=0.204 Sum_probs=428.0
Q ss_pred CCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEE
Q 037651 6 PSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLD 85 (750)
Q Consensus 6 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 85 (750)
+++++|++++|.++++++ ..+.++++|++|++++|.+++..|.+|.++++|++|+|++|.+++..|.+|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 579999999999999987 6789999999999999999988899999999999999999999988899999999999999
Q ss_pred CcCCCCcccccccccCCCCCCCEEeCcCccccc-ccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCc---
Q 037651 86 LSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRG-EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLR--- 161 (750)
Q Consensus 86 Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~--- 161 (750)
+++|. +.+..+..++++++|++|++++|.+.+ .+|..++.++ +|++|++++|++++..|..++.+++|+
T Consensus 111 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 111 AVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT------NLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp CTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT------TCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred ccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcC------CCCEEEccCCcceecChhhhhhhhcccccc
Confidence 99999 555556779999999999999999987 5688888887 999999999999988888887776655
Q ss_pred -EEEccCCcccccCCccccCCCCCCeeecccccCC-cccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecc
Q 037651 162 -YLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMN-GKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLI 239 (750)
Q Consensus 162 -~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 239 (750)
+|++++|.+.+..+..+... +|++|++++|.++ +..|..+.+++.|+.+++..+.+.+.. .+..+.
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~---------~l~~~~-- 251 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER---------NLEIFE-- 251 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC---------CCSCCC--
T ss_pred ceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC---------cccccC--
Confidence 89999999997766665554 9999999999997 466788999999999998776554311 111100
Q ss_pred cCCCCCceEeccCCCCCCCceeEEEe-ccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCc
Q 037651 240 KTSNSSLSFNISFDWIPPFKLRYLVI-RYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNH 318 (750)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~ 318 (750)
....... ....++.+++ ..+.+.+..|. +..+++|+.|++++|.+.. +| .+. .+++|++|++++|.
T Consensus 252 --------~~~~~~l-~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~-~~~~L~~L~l~~n~ 318 (606)
T 3vq2_A 252 --------PSIMEGL-CDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVP-KHFKWQSLSIIRCQ 318 (606)
T ss_dssp --------GGGGTTG-GGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCC-TTCCCSEEEEESCC
T ss_pred --------hHHhhhh-hhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hcc-ccccCCEEEccccc
Confidence 0001111 1124666666 55566666666 8888899999999988864 34 332 34688999999998
Q ss_pred CCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCccc--CCcCC
Q 037651 319 LSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGS--IPQSV 396 (750)
Q Consensus 319 l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~ 396 (750)
+ +.+|.. . +++|++|++++|...+.++ ...+++|++|++++|.+++. .+..+
T Consensus 319 l-~~lp~~-~---------------------l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~ 372 (606)
T 3vq2_A 319 L-KQFPTL-D---------------------LPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSYSD 372 (606)
T ss_dssp C-SSCCCC-C---------------------CSSCCEEEEESCSSCEECC---CCCCTTCCEEECCSSCEEEEEECCHHH
T ss_pred C-cccccC-C---------------------CCccceeeccCCcCccchh---hccCCCCCEEECcCCccCCCcchhhhh
Confidence 8 566632 2 5678888888885554442 23488999999999998866 47778
Q ss_pred cCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCC-ccccCCCCCCEEEccCCcCcCCCCccccCCCCCC
Q 037651 397 GNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIP-ESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMD 475 (750)
Q Consensus 397 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 475 (750)
..+++|++|++++|.+.+ +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|.+++..|..+.++++|+
T Consensus 373 ~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp HCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred ccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence 889999999999999885 56888999999999999999997777 6788999999999999999988999999999999
Q ss_pred EEecCCCccccc-CChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCC
Q 037651 476 SLDLGENQLSGN-IPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDT 554 (750)
Q Consensus 476 ~L~L~~n~~~~~-~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~ 554 (750)
+|++++|++.+. +|..+.. +++|++|++++|++++..|..+..+++|++|++++|++++.+|
T Consensus 452 ~L~l~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------- 514 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS---------------- 514 (606)
T ss_dssp EEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG----------------
T ss_pred EEECCCCcCCCcchHHhhcc-CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH----------------
Confidence 999999999874 5666654 9999999999999999989999999999999999999987544
Q ss_pred ccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCc-cCcEEEccCCccCcCCC
Q 037651 555 EIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLE-WLESLDLSRNKLSGSIP 628 (750)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p 628 (750)
..++.+++|++|+|++|+++ .+|..+..++ +|+.|++++|++.+..+
T Consensus 515 --------------------------~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 515 --------------------------SHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp --------------------------GGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred --------------------------HHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 35677888999999999998 6888899987 69999999999987655
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-51 Score=483.09 Aligned_cols=519 Identities=21% Similarity=0.199 Sum_probs=396.7
Q ss_pred cEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCcC
Q 037651 34 QVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSL 113 (750)
Q Consensus 34 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~ 113 (750)
+..+.++++++. +|. -.++|++|+|++|.+++..|.+|.++++|++|++++|.......|..|+++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 467888888875 454 4579999999999999888999999999999999999733333378899999999999999
Q ss_pred cccccccchhhhccccccCCCCccEEEccCCcCcccCCcc--ccCCCCCcEEEccCCcccccCC-ccccCCCCCCeeecc
Q 037651 114 NQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPIS--LGYLKNLRYLELWYNSFLGSIP-PSIGNLTFLEELYLT 190 (750)
Q Consensus 114 n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls 190 (750)
|.+.+..|..++.++ +|++|+|++|.+++..|.. ++++++|++|++++|.+.+..+ ..|+++++|++|+++
T Consensus 83 N~l~~~~p~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLF------HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp CCCCEECTTSSCSCS------SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred CcCcccCHhHccCCc------ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 999999899998887 9999999999999766665 8999999999999999987655 578999999999999
Q ss_pred cccCCcccchhccCC--CCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEeccc
Q 037651 191 SNQMNGKFPESFGQL--SAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYY 268 (750)
Q Consensus 191 ~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 268 (750)
+|.+++..+..+..+ ++|+.|+++.|.+.+..+. .+..+++ ......|+.|++++|
T Consensus 157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~---------------------~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMN---------------------PFRNMVLEILDVSGN 214 (844)
T ss_dssp SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSC---------------------TTTTCCBSEEBCSSC
T ss_pred CCcCCeeCHHHcccccCCccceEECCCCcccccccc-chhhcCC---------------------ccccCceeEEecCCC
Confidence 999998888888877 8999999999998875544 2333222 000113555555555
Q ss_pred cCCCCCChhhccC---CcccEEEcCCCCcC---------CCcChHHHhh-cCCCcEEEcCCCcCCCcCCCccccCCCceE
Q 037651 269 QLGPKFPTWLRNQ---TELTTLVLNGASIS---------DTLPSWFWQL-NLTLDELDVGGNHLSGRIPNTLVFRFPGSV 335 (750)
Q Consensus 269 ~~~~~~p~~l~~~---~~L~~L~L~~n~i~---------~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l 335 (750)
.+.+..+..+... .+++.+.++.+... +..+..+... .++++.|++++|.+.+..+..+.
T Consensus 215 ~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~------- 287 (844)
T 3j0a_A 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE------- 287 (844)
T ss_dssp CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS-------
T ss_pred cCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh-------
Confidence 5555555554432 45556655532221 1111111111 12344444444444433222211
Q ss_pred ECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccc
Q 037651 336 DLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGG 415 (750)
Q Consensus 336 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 415 (750)
.+++|+.|++++|.+++..|..+ ..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+.
T Consensus 288 -------------~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 353 (844)
T 3j0a_A 288 -------------TLKDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353 (844)
T ss_dssp -------------SCCCCCEEEEESCCCCEECTTTT-TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC
T ss_pred -------------cCCCCCEEECCCCcCCCCChHHh-cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc
Confidence 25789999999999985555544 4588999999999999988888999999999999999999887
Q ss_pred cCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCCh-hhhh
Q 037651 416 IPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA-WIGE 494 (750)
Q Consensus 416 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~ 494 (750)
.+..|..+++|++|++++|.+++ ++ .+++|+.|++++|+++ .+|.. ..+++.|++++|++.+ ++. ....
T Consensus 354 ~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~-l~~~~~~~ 423 (844)
T 3j0a_A 354 QDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLEN-LDILYFLL 423 (844)
T ss_dssp CSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCS-STTHHHHT
T ss_pred ChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcc-ccccc---ccccceeecccCcccc-Cchhhhhh
Confidence 78888999999999999999873 32 3788999999999998 55543 4678999999999984 333 2223
Q ss_pred cCCCCCEEEccCccceeecCc-cccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeec
Q 037651 495 SMPSLSILRLRSNHFNGTIPS-ELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQ 573 (750)
Q Consensus 495 ~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (750)
.+++|+.|++++|++++..+. .+..+++|+.|++++|.+++..+..
T Consensus 424 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~--------------------------------- 470 (844)
T 3j0a_A 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE--------------------------------- 470 (844)
T ss_dssp TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSC---------------------------------
T ss_pred cCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccc---------------------------------
Confidence 489999999999999865443 3566889999999999987543321
Q ss_pred ccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceecCCC
Q 037651 574 QTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGEIPT 653 (750)
Q Consensus 574 ~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~ 653 (750)
..|..|.++++|+.|+|++|++++.+|..|..+++|+.|+|++|++++..|..+. ++|++||+++|+++|.+|.
T Consensus 471 ----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~ 544 (844)
T 3j0a_A 471 ----LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD 544 (844)
T ss_dssp ----CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC
T ss_pred ----cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh
Confidence 1334577889999999999999999999999999999999999999987777665 8999999999999999886
Q ss_pred C
Q 037651 654 A 654 (750)
Q Consensus 654 ~ 654 (750)
.
T Consensus 545 ~ 545 (844)
T 3j0a_A 545 V 545 (844)
T ss_dssp C
T ss_pred H
Confidence 4
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-51 Score=461.81 Aligned_cols=521 Identities=21% Similarity=0.198 Sum_probs=396.1
Q ss_pred CcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEEC
Q 037651 7 SIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDL 86 (750)
Q Consensus 7 ~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 86 (750)
..+.++.++.+++.+|... .+++++|++++|.+++..+.+|.++++|++|++++|++++..|.+|+++++|++|++
T Consensus 8 ~~~~~~c~~~~l~~ip~~l----~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 83 (570)
T 2z63_A 8 PNITYQCMELNFYKIPDNL----PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83 (570)
T ss_dssp TTTEEECCSSCCSSCCSSS----CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCCccccCCCc----cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeC
Confidence 3467889999999888622 268999999999999888889999999999999999999888889999999999999
Q ss_pred cCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcc-cCCccccCCCCCcEEEc
Q 037651 87 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLEL 165 (750)
Q Consensus 87 s~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L 165 (750)
++|+ +....|..|+++++|++|++++|.+++..+..++.++ +|++|++++|.+++ .+|..++++++|++|++
T Consensus 84 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~------~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l 156 (570)
T 2z63_A 84 TGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (570)
T ss_dssp TTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred cCCc-CCccCHhhhcCccccccccccccccccCCCccccccc------cccEEecCCCccceecChhhhcccCCCCEEeC
Confidence 9999 6666678899999999999999999887666677776 99999999999986 47899999999999999
Q ss_pred cCCcccccCCccccCCCCC----CeeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccC
Q 037651 166 WYNSFLGSIPPSIGNLTFL----EELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKT 241 (750)
Q Consensus 166 ~~n~l~~~~p~~l~~l~~L----~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~ 241 (750)
++|++.+..+..++.+++| ++|++++|.+++..|..+... +|+.|++++|..........+..++.++...+...
T Consensus 157 ~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~ 235 (570)
T 2z63_A 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235 (570)
T ss_dssp TTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEE
T ss_pred cCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccc
Confidence 9999998888888888888 899999999998777777655 89999999886543333335666776666554331
Q ss_pred CCCCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCC-cCC
Q 037651 242 SNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGN-HLS 320 (750)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n-~l~ 320 (750)
.. .....++. .....+..++++ .++.++++++ .+.
T Consensus 236 ~~-----------~~~~~l~~----------~~~~~~~~l~~l-----------------------~l~~l~l~~~~~~~ 271 (570)
T 2z63_A 236 EF-----------RNEGNLEK----------FDKSALEGLCNL-----------------------TIEEFRLAYLDYYL 271 (570)
T ss_dssp EC-----------CCCSSCEE----------CCTTTTGGGGGS-----------------------EEEEEEEEETTEEE
T ss_pred cc-----------cCchhhhh----------cchhhhcccccc-----------------------chhhhhhhcchhhh
Confidence 10 00000000 001111111110 2333333333 222
Q ss_pred CcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCC
Q 037651 321 GRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLK 400 (750)
Q Consensus 321 ~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 400 (750)
+..|..+.. +++|++|++++|.++ .+|..+.. + +|++|++++|.+. .+|. ..++
T Consensus 272 ~~~~~~~~~--------------------l~~L~~L~l~~~~l~-~l~~~~~~-~-~L~~L~l~~n~~~-~l~~--~~l~ 325 (570)
T 2z63_A 272 DDIIDLFNC--------------------LTNVSSFSLVSVTIE-RVKDFSYN-F-GWQHLELVNCKFG-QFPT--LKLK 325 (570)
T ss_dssp SCSTTTTGG--------------------GTTCSEEEEESCEEC-SCCBCCSC-C-CCSEEEEESCBCS-SCCB--CBCS
T ss_pred hhchhhhcC--------------------cCcccEEEecCccch-hhhhhhcc-C-CccEEeeccCccc-ccCc--cccc
Confidence 222222211 356777777777666 56665544 4 7777777777776 4443 3467
Q ss_pred CCCeEECccCccccccCccccCCCCCCEEeCCCCccceeC--CccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEe
Q 037651 401 QLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEI--PESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLD 478 (750)
Q Consensus 401 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 478 (750)
+|++|++++|.+.+..+. ..+++|++|++++|++++.. +..+..+++|++|++++|.+++..+ .+..+++|+.|+
T Consensus 326 ~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~ 402 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLD 402 (570)
T ss_dssp SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEE
T ss_pred ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEE
Confidence 788888888877765544 67788888888888887544 6677788888888888888885444 488888999999
Q ss_pred cCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCC-CcCCccccccccCccCCCCCccc
Q 037651 479 LGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLS-GPIPHCVGDFSAMKVKPPDTEIY 557 (750)
Q Consensus 479 L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~l~~~~~~~~~~ 557 (750)
+++|++.+..|...+..+++|++|++++|++.+..|..+..+++|++|++++|+++ +.+|.
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~------------------ 464 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD------------------ 464 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS------------------
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh------------------
Confidence 99998886555444445889999999999998888888999999999999999887 34443
Q ss_pred cCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCC
Q 037651 558 QGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFL 637 (750)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 637 (750)
.++.+++|++|++++|++++..|..++.+++|+.|++++|++++..|..+..+++|
T Consensus 465 ------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 465 ------------------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp ------------------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ------------------------hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 46677888999999999998889999999999999999999998888889999999
Q ss_pred CeEECcCCcceecCCCC
Q 037651 638 SFLNLSFNNLSGEIPTA 654 (750)
Q Consensus 638 ~~l~ls~N~l~g~ip~~ 654 (750)
+++++++|+++|.+|..
T Consensus 521 ~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 521 QKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CEEECCSSCBCCCTTTT
T ss_pred cEEEecCCcccCCCcch
Confidence 99999999999988764
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.6e-49 Score=444.38 Aligned_cols=498 Identities=22% Similarity=0.238 Sum_probs=391.9
Q ss_pred CCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEE
Q 037651 6 PSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLD 85 (750)
Q Consensus 6 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 85 (750)
+++++|++++|.++++++ ..+.++++|++|+|++|.+++..+..|.++++|++|+|++|.+.+..|.+|+++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 479999999999999887 6788999999999999999988888999999999999999999988889999999999999
Q ss_pred CcCCCCcccccccccCCCCCCCEEeCcCccccc-ccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCC----
Q 037651 86 LSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRG-EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNL---- 160 (750)
Q Consensus 86 Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L---- 160 (750)
+++|. +....+..++++++|++|++++|.+++ ..|..++.++ +|++|++++|.+++..+..++.+++|
T Consensus 107 L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp CTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT------TCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred ccccc-cccCCCccccccccccEEecCCCccceecChhhhcccC------CCCEEeCcCCccceecHHHccchhccchhh
Confidence 99999 554444469999999999999999987 4688888887 99999999999998888888888888
Q ss_pred cEEEccCCcccccCCccccCCCCCCeeecccccCCc-ccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecc
Q 037651 161 RYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNG-KFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLI 239 (750)
Q Consensus 161 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 239 (750)
+.|++++|.+.+..|..+... +|++|++++|.... .++..+..++.++.+.+....+.. ...++.+.-.
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~---------~~~l~~~~~~ 249 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN---------EGNLEKFDKS 249 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC---------CSSCEECCTT
T ss_pred hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC---------chhhhhcchh
Confidence 899999999998888877766 89999999986542 356677888888877766443321 1111111100
Q ss_pred cCCCCCceEeccCCCCCCCceeEEEeccc-cCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCc
Q 037651 240 KTSNSSLSFNISFDWIPPFKLRYLVIRYY-QLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNH 318 (750)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~ 318 (750)
. +. -.....++.+++.++ .+.+..|.++..+++|++|++++|.+.+ +|.++..
T Consensus 250 ~-----~~------~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~-------------- 303 (570)
T 2z63_A 250 A-----LE------GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYN-------------- 303 (570)
T ss_dssp T-----TG------GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSC--------------
T ss_pred h-----hc------cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhcc--------------
Confidence 0 00 001124666777776 5666777777777777777777776652 3332221
Q ss_pred CCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcC
Q 037651 319 LSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGN 398 (750)
Q Consensus 319 l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 398 (750)
. +|++|++++|.+. .+|.. .+++|++|++++|.+.+..+. ..
T Consensus 304 -------------------------------~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~~ 345 (570)
T 2z63_A 304 -------------------------------F-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--VD 345 (570)
T ss_dssp -------------------------------C-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--CB
T ss_pred -------------------------------C-CccEEeeccCccc-ccCcc---cccccCEEeCcCCcccccccc--cc
Confidence 2 4555666666555 45542 366677777777776655544 55
Q ss_pred CCCCCeEECccCcccccc--CccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCC-ccccCCCCCC
Q 037651 399 LKQLLTLVISNNNLSGGI--PQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIP-PSLKNCSLMD 475 (750)
Q Consensus 399 l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~ 475 (750)
+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+++..+ ..+.++++|+
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 788888888888887553 6678888899999999998885444 48888999999999999887665 5688899999
Q ss_pred EEecCCCcccccCChhhhhcCCCCCEEEccCccce-eecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCC
Q 037651 476 SLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFN-GTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDT 554 (750)
Q Consensus 476 ~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~ 554 (750)
+|++++|++.+..|..+.. +++|++|++++|++. +.+|..+..+++|+.|++++|++++..|.
T Consensus 425 ~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~--------------- 488 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT--------------- 488 (570)
T ss_dssp EEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT---------------
T ss_pred EEeCcCCcccccchhhhhc-CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh---------------
Confidence 9999999998766666654 899999999999997 57899999999999999999999865554
Q ss_pred ccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCc
Q 037651 555 EIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPP 629 (750)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 629 (750)
.+..+++|++|++++|++++..|..++.+++|+.|++++|++++..|.
T Consensus 489 ---------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 489 ---------------------------AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ---------------------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ---------------------------hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 466778899999999999988888899999999999999999988774
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.1e-49 Score=443.91 Aligned_cols=500 Identities=23% Similarity=0.221 Sum_probs=318.5
Q ss_pred CCCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEE
Q 037651 5 LPSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLL 84 (750)
Q Consensus 5 l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 84 (750)
|+.....++++++++.+|.. + .++|++|++++|.+++..|..|.++++|++|++++|++.+..|.+|+++++|++|
T Consensus 4 C~~~~~c~~~~~~l~~ip~~--~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSG--L--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSC--C--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCceEECCCCcccccccc--C--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence 44555677788888887762 2 2678888888888887777778888888888888888887777788888888888
Q ss_pred ECcCCCCcccccccccCCCCCCCEEeCcCcccccc-cchhhhccccccCCCCccEEEccCCcCcccCC-ccccCCCCCcE
Q 037651 85 DLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGE-VSDFIDGLSECINSSSLARLELGYNQLTGNLP-ISLGYLKNLRY 162 (750)
Q Consensus 85 ~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~ 162 (750)
++++|. +.+..+..|+++++|++|++++|.+++. .+..++.++ +|++|++++|.+.+.+| ..+.++++|++
T Consensus 80 ~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~------~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 80 DLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT------NLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp ECTTSC-CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT------TCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred ECCCCc-cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC------CccEEECCCCccccccCHhhhhcccccCe
Confidence 888887 5555566678888888888888877753 344555555 77777777776433443 46777777777
Q ss_pred EEccCCcccccCCccccCCCCCCeeecccccCCcccchh-ccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccC
Q 037651 163 LELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPES-FGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKT 241 (750)
Q Consensus 163 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~ 241 (750)
|++++|.+.+..|..++++++|++|+++.|.+.. +|.. +..+++|++|++++|++++....
T Consensus 153 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------- 214 (549)
T 2z81_A 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFS----------------- 214 (549)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCC-----------------
T ss_pred eeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCcccccccc-----------------
Confidence 7777777776677777777777777777777653 3333 34566777777777666542100
Q ss_pred CCCCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHh---hcCCCcEEEcCCCc
Q 037651 242 SNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQ---LNLTLDELDVGGNH 318 (750)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~---~~~~L~~L~l~~n~ 318 (750)
.......+++|+.|++++|.+.+..+..+.. ..++++.+++++|.
T Consensus 215 --------------------------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 215 --------------------------------PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp --------------------------------CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred --------------------------------ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 0000112334444444444444333332221 12355555555555
Q ss_pred CCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcC
Q 037651 319 LSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGN 398 (750)
Q Consensus 319 l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 398 (750)
+.+..... ......+..+++++.|++.++.+..... + ..++..+..
T Consensus 263 ~~~~~~~~--------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~------~--------------~~l~~~~~~ 308 (549)
T 2z81_A 263 LNGLGDFN--------------PSESDVVSELGKVETVTIRRLHIPQFYL------F--------------YDLSTVYSL 308 (549)
T ss_dssp EECCSCCC--------------CCTTTCCCCCTTCCEEEEESCBCSCGGG------S--------------CCCCHHHHH
T ss_pred cccccccc--------------ccchhhhhhhcccccccccccccchhhh------c--------------ccchhhhhh
Confidence 44321100 0000111124566666666665431100 0 001111122
Q ss_pred CCCCCeEECccCccccccCccc-cCCCCCCEEeCCCCccceeCCc---cccCCCCCCEEEccCCcCcCCCC--ccccCCC
Q 037651 399 LKQLLTLVISNNNLSGGIPQFL-KNISSLYILDMTKNNFSGEIPE---SIGSLLTIRFLVLSNNHLSGEIP--PSLKNCS 472 (750)
Q Consensus 399 l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~ 472 (750)
.++|++|++++|.+. .+|..+ ..+++|++|++++|++++.+|. .+..+++|++|++++|++++..+ ..+..++
T Consensus 309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 456667777776665 444444 4567777777777777665532 35566777777777777764322 3466777
Q ss_pred CCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCC
Q 037651 473 LMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPP 552 (750)
Q Consensus 473 ~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~ 552 (750)
+|++|++++|+++ .+|..+.. +++|++|++++|+++ .+|..+ .++|++|++++|++++.+
T Consensus 388 ~L~~L~Ls~N~l~-~lp~~~~~-~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~--------------- 447 (549)
T 2z81_A 388 NLTSLDISRNTFH-PMPDSCQW-PEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS--------------- 447 (549)
T ss_dssp TCCEEECTTCCCC-CCCSCCCC-CTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC---------------
T ss_pred CCCEEECCCCCCc-cCChhhcc-cccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc---------------
Confidence 7777777777776 56765543 677777777777776 444433 257888888888887531
Q ss_pred CCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCcccc
Q 037651 553 DTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMV 632 (750)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 632 (750)
..+++|++|+|++|+++ .+|. .+.+++|+.|||++|++++.+|..+.
T Consensus 448 -------------------------------~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~ 494 (549)
T 2z81_A 448 -------------------------------LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFD 494 (549)
T ss_dssp -------------------------------CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred -------------------------------ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHh
Confidence 24567888888888888 6676 46788899999999999988888888
Q ss_pred CCCCCCeEECcCCcceecCCC
Q 037651 633 SIRFLSFLNLSFNNLSGEIPT 653 (750)
Q Consensus 633 ~l~~L~~l~ls~N~l~g~ip~ 653 (750)
.+++|++|++++|++.|.+|.
T Consensus 495 ~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 495 RLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp GCTTCCEEECCSSCBCCCHHH
T ss_pred cCcccCEEEecCCCccCCCcc
Confidence 899999999999998887763
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.5e-46 Score=428.91 Aligned_cols=537 Identities=22% Similarity=0.199 Sum_probs=402.9
Q ss_pred CEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcC
Q 037651 9 VELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSG 88 (750)
Q Consensus 9 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 88 (750)
+..+.++.+++.+|...+ +++++|||++|.|+++.+.+|.++++|++|+|++|+|+++.|.+|.++++|++|+|++
T Consensus 34 ~~~~c~~~~l~~vP~~lp----~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp TEEECTTSCCSSCCSSSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCCcCccCCCCC----cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence 456788888998886322 6899999999999988888999999999999999999988888999999999999999
Q ss_pred CCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcc-cCCccccCCCCCcEEEccC
Q 037651 89 NSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLELWY 167 (750)
Q Consensus 89 n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~ 167 (750)
|+ ++...+.+|.++++|++|++++|++++..+..|+.++ +|++|++++|.+++ ..|..++.+++|++|++++
T Consensus 110 N~-l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 110 NP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp CC-CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred Cc-CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc------ccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 99 5555567799999999999999999988887888887 99999999999975 4678889999999999999
Q ss_pred CcccccCCccccCCCCCC----eeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCC
Q 037651 168 NSFLGSIPPSIGNLTFLE----ELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSN 243 (750)
Q Consensus 168 n~l~~~~p~~l~~l~~L~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~ 243 (750)
|++++..+..+..+++++ .++++.|.++...+. ......++.+++.+|.....+....+..+..++...+.....
T Consensus 183 N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 261 (635)
T 4g8a_A 183 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 261 (635)
T ss_dssp SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred ccccccccccccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence 999988888877665544 688999999855444 444556788899888776555555677777777666543211
Q ss_pred CCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCC---cChHHHhhcCCCcEEEcCCCcCC
Q 037651 244 SSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDT---LPSWFWQLNLTLDELDVGGNHLS 320 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~---~~~~~~~~~~~L~~L~l~~n~l~ 320 (750)
.... .+.......+.....+...++..+..... .+.. ......++.+++.++.+.
T Consensus 262 ~~~~---------------------~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~ 319 (635)
T 4g8a_A 262 RNEG---------------------NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL-FNCLTNVSSFSLVSVTIE 319 (635)
T ss_dssp TTSC---------------------CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT-TGGGTTCSEEEEESCEEE
T ss_pred cccc---------------------ccccccccccccccchhhhhhhhhhhcccccchhhh-hhhhcccccccccccccc
Confidence 1000 00111122222233333333322211111 0111 111234555555555443
Q ss_pred CcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCC
Q 037651 321 GRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLK 400 (750)
Q Consensus 321 ~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 400 (750)
...+. . ....++.|++.+|.+.+ ++.. .++.|+.++++.|....... ...++
T Consensus 320 ~~~~~-~---------------------~~~~L~~L~l~~~~~~~-~~~~---~l~~L~~l~l~~n~~~~~~~--~~~l~ 371 (635)
T 4g8a_A 320 RVKDF-S---------------------YNFGWQHLELVNCKFGQ-FPTL---KLKSLKRLTFTSNKGGNAFS--EVDLP 371 (635)
T ss_dssp ECGGG-G---------------------SCCCCSEEEEESCEESS-CCCC---BCTTCCEEEEESCCSCCBCC--CCBCT
T ss_pred ccccc-c---------------------cchhhhhhhcccccccC-cCcc---cchhhhhcccccccCCCCcc--ccccc
Confidence 21110 0 13467777777777663 3322 25677888888777654332 34578
Q ss_pred CCCeEECccCcccc--ccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCC-ccccCCCCCCEE
Q 037651 401 QLLTLVISNNNLSG--GIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIP-PSLKNCSLMDSL 477 (750)
Q Consensus 401 ~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 477 (750)
+|+.|++++|.+.. ..+..+..+.+|+.++++.|.+. ..+..+..+++|+.+++++|......+ ..+..+++++.+
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccc
Confidence 89999999988753 44566778889999999999887 455667889999999999888765544 568889999999
Q ss_pred ecCCCcccccCChhhhhcCCCCCEEEccCccc-eeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCcc
Q 037651 478 DLGENQLSGNIPAWIGESMPSLSILRLRSNHF-NGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEI 556 (750)
Q Consensus 478 ~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l-~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~ 556 (750)
+++.|.+.+..+..+ ..+++|+.|++++|++ .+..|..+..+++|++|||++|++++..|.
T Consensus 451 ~ls~n~l~~~~~~~~-~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~----------------- 512 (635)
T 4g8a_A 451 DISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT----------------- 512 (635)
T ss_dssp ECTTSCCEECCTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-----------------
T ss_pred ccccccccccccccc-ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH-----------------
Confidence 999999986555544 4599999999999985 446788999999999999999999876554
Q ss_pred ccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCC-C
Q 037651 557 YQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSI-R 635 (750)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~ 635 (750)
.|+++++|++|+|++|++++..|..|+.+++|+.|||++|++++..|..+..+ +
T Consensus 513 -------------------------~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 567 (635)
T 4g8a_A 513 -------------------------AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 567 (635)
T ss_dssp -------------------------TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCT
T ss_pred -------------------------HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhC
Confidence 56778889999999999999999999999999999999999999999999988 6
Q ss_pred CCCeEECcCCcceecC
Q 037651 636 FLSFLNLSFNNLSGEI 651 (750)
Q Consensus 636 ~L~~l~ls~N~l~g~i 651 (750)
+|++|++++|++.|..
T Consensus 568 ~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 568 SLAFLNLTQNDFACTC 583 (635)
T ss_dssp TCCEEECTTCCBCCSG
T ss_pred cCCEEEeeCCCCcccC
Confidence 8999999999998753
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.9e-47 Score=429.60 Aligned_cols=479 Identities=22% Similarity=0.225 Sum_probs=330.6
Q ss_pred CCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEE
Q 037651 6 PSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLD 85 (750)
Q Consensus 6 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 85 (750)
++|++|++++|.+++.++ ..+.++++|++|++++|.+++..|..|.++++|++|++++|++.+..|..|+++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 589999999999999876 6788999999999999999998889999999999999999999988888899999999999
Q ss_pred CcCCCCcccccccccCCCCCCCEEeCcCccccccc-chhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEE
Q 037651 86 LSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEV-SDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLE 164 (750)
Q Consensus 86 Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 164 (750)
+++|.+.....|..++++++|++|++++|.+.+.+ +..++.++ +|++|++++|.+++..|..++.+++|++|+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT------SLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC------EEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc------ccCeeeccCCcccccChhhhhccccCceEe
Confidence 99999543356778999999999999999844444 46777776 999999999999999999999999999999
Q ss_pred ccCCcccccCCccccCCCCCCeeecccccCCccc--c-hhccCCCCCCEEEcccCcCccccChh---hhcCCCCCCEEec
Q 037651 165 LWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKF--P-ESFGQLSAIRVLELSDNQWEGFITEA---HLRNLTSLEELSL 238 (750)
Q Consensus 165 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~---~l~~l~~L~~L~l 238 (750)
+++|.+....+..+..+++|++|++++|++++.. | .....+++|+.|++++|.+++..+.. .+..+++|+.+++
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred cccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 9999986433333467999999999999998642 1 22345789999999999887644331 2344556666666
Q ss_pred ccCCCCCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCc
Q 037651 239 IKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNH 318 (750)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~ 318 (750)
++|....... + .......+..+++ ++.+++.++.
T Consensus 259 ~~~~~~~~~~-----~----------------~~~~~~~~~~l~~-------------------------L~~L~l~~~~ 292 (549)
T 2z81_A 259 DDCTLNGLGD-----F----------------NPSESDVVSELGK-------------------------VETVTIRRLH 292 (549)
T ss_dssp ESCEEECCSC-----C----------------CCCTTTCCCCCTT-------------------------CCEEEEESCB
T ss_pred cccccccccc-----c----------------cccchhhhhhhcc-------------------------cccccccccc
Confidence 5532200000 0 0000111223334 4444444443
Q ss_pred CCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCC---cC
Q 037651 319 LSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIP---QS 395 (750)
Q Consensus 319 l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~---~~ 395 (750)
+.... ... +++ ......++|+.|++++|.++ .+|..++..+++|++|++++|++.+..| ..
T Consensus 293 i~~~~----~~~-----~l~------~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 356 (549)
T 2z81_A 293 IPQFY----LFY-----DLS------TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356 (549)
T ss_dssp CSCGG----GSC-----CCC------HHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC
T ss_pred cchhh----hcc-----cch------hhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhh
Confidence 32110 000 000 00001357777788777776 6776665556666666666666655432 22
Q ss_pred CcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCC
Q 037651 396 VGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMD 475 (750)
Q Consensus 396 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 475 (750)
++.+++|++|++++|++++..+ .+..+..+++|++|++++|+++ .+|..+..+++|+
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~~~----------------------~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~ 413 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSMQK----------------------TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR 413 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCHHH----------------------HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCC
T ss_pred hhccccCcEEEccCCccccccc----------------------chhhhhcCCCCCEEECCCCCCc-cCChhhccccccc
Confidence 3444555555555555443211 0123444555555555555555 4455555566666
Q ss_pred EEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCc
Q 037651 476 SLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTE 555 (750)
Q Consensus 476 ~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~ 555 (750)
+|++++|+++ .+|..+ .++|++|++++|++++.+ ..+++|++|++++|+++ .+|.
T Consensus 414 ~L~Ls~N~l~-~l~~~~---~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~---------------- 468 (549)
T 2z81_A 414 FLNLSSTGIR-VVKTCI---PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD---------------- 468 (549)
T ss_dssp EEECTTSCCS-CCCTTS---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC----------------
T ss_pred EEECCCCCcc-cccchh---cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC----------------
Confidence 6666666665 455433 357777777777777532 46778888888888887 4443
Q ss_pred cccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCC
Q 037651 556 IYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIP 628 (750)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 628 (750)
...+++|++|+|++|++++.+|..++.+++|+.|++++|++.+..|
T Consensus 469 ---------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 469 ---------------------------ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ---------------------------GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ---------------------------cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 2346778888898888888888888888999999999999887776
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.7e-48 Score=439.38 Aligned_cols=448 Identities=19% Similarity=0.269 Sum_probs=253.7
Q ss_pred CCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCc-----cc------ccccccCCCCCCCEEeCcCcccccccchh
Q 037651 55 TNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFL-----EG------QLSRNLGTLCNLQTLKLSLNQFRGEVSDF 123 (750)
Q Consensus 55 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~-----~~------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 123 (750)
.+++.|+|++|.+.|.+|.+++++++|++|+|++|.+. .+ .+|... +..|+ ++++.|.+.+..+..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 35666666666666666666666666666666666420 11 222222 34455 666666666655554
Q ss_pred hhcccc-c------------cCCCCccEEEcc--CCcCcccCCccccCCCCCcEEEccCCccccc---------------
Q 037651 124 IDGLSE-C------------INSSSLARLELG--YNQLTGNLPISLGYLKNLRYLELWYNSFLGS--------------- 173 (750)
Q Consensus 124 l~~l~~-~------------~~~~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--------------- 173 (750)
+..+.. + .....++.+.+. .|++++ +|..++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 432110 0 000012222222 355665 666666666666666666666654
Q ss_pred --CCcccc--CCCCCCeeecccccCCcccchhccCCCCCCEEEcccCc-Ccc-ccChhhhcCCCCCCEEecccCCCCCce
Q 037651 174 --IPPSIG--NLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQ-WEG-FITEAHLRNLTSLEELSLIKTSNSSLS 247 (750)
Q Consensus 174 --~p~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 247 (750)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|. .+.++.
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~---------------- 299 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALA---------------- 299 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHH----------------
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhh----------------
Confidence 666666 66666666666666666666666666666666666665 555 4443 222110
Q ss_pred EeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcCh--HHHhhcCCCcEEEcCCCcCCCcCCC
Q 037651 248 FNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPS--WFWQLNLTLDELDVGGNHLSGRIPN 325 (750)
Q Consensus 248 ~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~ 325 (750)
.+..+++|++|++++|.++ .+|. .+.. +++|++|++++|+++
T Consensus 300 -----------------------------~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~-l~~L~~L~L~~N~l~----- 343 (636)
T 4eco_A 300 -----------------------------DAPVGEKIQIIYIGYNNLK-TFPVETSLQK-MKKLGMLECLYNQLE----- 343 (636)
T ss_dssp -----------------------------HSGGGGTCCEEECCSSCCS-SCCCHHHHTT-CTTCCEEECCSCCCE-----
T ss_pred -----------------------------ccccCCCCCEEECCCCcCC-ccCchhhhcc-CCCCCEEeCcCCcCc-----
Confidence 0011234444444444444 3333 2222 133444444444433
Q ss_pred ccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCC-CCe
Q 037651 326 TLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQ-LLT 404 (750)
Q Consensus 326 ~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~-L~~ 404 (750)
|.+| .+ ..+++|++|++++|+++ .+|..+..+++ |++
T Consensus 344 ---------------------------------------g~ip-~~-~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~ 381 (636)
T 4eco_A 344 ---------------------------------------GKLP-AF-GSEIKLASLNLAYNQIT-EIPANFCGFTEQVEN 381 (636)
T ss_dssp ---------------------------------------EECC-CC-EEEEEESEEECCSSEEE-ECCTTSEEECTTCCE
T ss_pred ---------------------------------------cchh-hh-CCCCCCCEEECCCCccc-cccHhhhhhcccCcE
Confidence 3333 21 12444445555555444 44444555555 555
Q ss_pred EECccCccccccCccccCCC--CCCEEeCCCCccceeCCcccc-------CCCCCCEEEccCCcCcCCCCccccCCCCCC
Q 037651 405 LVISNNNLSGGIPQFLKNIS--SLYILDMTKNNFSGEIPESIG-------SLLTIRFLVLSNNHLSGEIPPSLKNCSLMD 475 (750)
Q Consensus 405 L~L~~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 475 (750)
|++++|.++ .+|..+..+. +|++|++++|++++..|..+. .+++|++|++++|+++...+..+..+++|+
T Consensus 382 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp EECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred EEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence 555555555 4444444433 555566666655555555554 455666666666666633333344566666
Q ss_pred EEecCCCcccccCChhhhhcCC-------CCCEEEccCccceeecCcccc--CCCCCcEEEcccCcCCCcCCcccccccc
Q 037651 476 SLDLGENQLSGNIPAWIGESMP-------SLSILRLRSNHFNGTIPSELC--KLSALHILDLSHNNLSGPIPHCVGDFSA 546 (750)
Q Consensus 476 ~L~L~~n~~~~~~p~~~~~~l~-------~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 546 (750)
.|++++|+++ .+|...+.... +|+.|++++|+++ .+|..+. .+++|+.|+|++|++++ +|.
T Consensus 461 ~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~------- 530 (636)
T 4eco_A 461 SINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPT------- 530 (636)
T ss_dssp EEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCC-------
T ss_pred EEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cCh-------
Confidence 6666666666 56655443222 6777777777776 5666665 67777777777777765 443
Q ss_pred CccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEec------cCCcCCCCcccccCCCccCcEEEccC
Q 037651 547 MKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNL------SGNQLVGKIPTQIGKLEWLESLDLSR 620 (750)
Q Consensus 547 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~Ls~ 620 (750)
.+..+++|++|+| ++|++.+.+|..++.+++|+.|+|++
T Consensus 531 -----------------------------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 531 -----------------------------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp -----------------------------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred -----------------------------------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence 3445666677777 56778888888888888888888888
Q ss_pred CccCcCCCccccCCCCCCeEECcCCcceec
Q 037651 621 NKLSGSIPPSMVSIRFLSFLNLSFNNLSGE 650 (750)
Q Consensus 621 N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ 650 (750)
|++ +.+|..+. ++|++||+++|++...
T Consensus 576 N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 576 NDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp SCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 888 57887765 7888889988887653
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.1e-47 Score=426.01 Aligned_cols=470 Identities=20% Similarity=0.226 Sum_probs=277.0
Q ss_pred CEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcC
Q 037651 9 VELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSG 88 (750)
Q Consensus 9 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 88 (750)
++|++++++++.+|.. +. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|.+|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~~ip~~--~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKD--LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCS--CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccc--cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 4677778777777652 22 6777778887777776667777777777777777777766677777777777777777
Q ss_pred CCCcccccccccCCCCCCCEEeCcCccccc-ccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCC--cEEEc
Q 037651 89 NSFLEGQLSRNLGTLCNLQTLKLSLNQFRG-EVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNL--RYLEL 165 (750)
Q Consensus 89 n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L 165 (750)
|++ + .+|.. .+++|++|++++|.+++ ..|..++.++ +|++|++++|.+++ ..+..+++| ++|++
T Consensus 79 N~l-~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~------~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 79 NKL-V-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS------QLKFLGLSTTHLEK---SSVLPIAHLNISKVLL 145 (520)
T ss_dssp SCC-C-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT------TCCEEEEEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred Cce-e-ecCcc--ccCCccEEeccCCccccccchhhhccCC------cceEEEecCcccch---hhccccccceeeEEEe
Confidence 773 3 34544 56666666666666655 2445555554 55555555555543 233444444 55555
Q ss_pred cCCcc--cccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCC
Q 037651 166 WYNSF--LGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSN 243 (750)
Q Consensus 166 ~~n~l--~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~ 243 (750)
++|.+ .+..|..+..++. +...+++++|.+.+.++...+.++++|+.+++++|..
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~-----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 202 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNT-----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCE-----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred eccccccccccccccccccc-----------------------ceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence 55554 3444444433331 1122334444443333333333333333333333110
Q ss_pred CCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcC
Q 037651 244 SSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRI 323 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 323 (750)
.... ..+.+.+| .+..+++|+.|++++|.+.+..+..+....
T Consensus 203 ~~~~--------------------~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~----------------- 244 (520)
T 2z7x_B 203 DNKC--------------------SYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLV----------------- 244 (520)
T ss_dssp TTTT--------------------HHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHH-----------------
T ss_pred cccc--------------------ceeecchh-hhccccchhhccccccccCHHHHHHHHHHh-----------------
Confidence 0000 00011111 233444444444444443322211111000
Q ss_pred CCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCC
Q 037651 324 PNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLL 403 (750)
Q Consensus 324 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 403 (750)
..++|++|++++|.++|.+|..++.. ....+++|+
T Consensus 245 -------------------------~~~~L~~L~l~~n~l~~~~p~~~~~~--------------------~~~~l~~L~ 279 (520)
T 2z7x_B 245 -------------------------WHTTVWYFSISNVKLQGQLDFRDFDY--------------------SGTSLKALS 279 (520)
T ss_dssp -------------------------HTSSCSEEEEEEEEEESCCCCCCCCC--------------------CSCCCCEEE
T ss_pred -------------------------hhCcccEEEeecccccCccccchhhc--------------------ccccCceeE
Confidence 01234444444444444444333110 014455566
Q ss_pred eEECccCccccccC-ccccCC---CCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEec
Q 037651 404 TLVISNNNLSGGIP-QFLKNI---SSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDL 479 (750)
Q Consensus 404 ~L~L~~n~l~~~~~-~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 479 (750)
.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 280 ~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 355 (520)
T 2z7x_B 280 IHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355 (520)
T ss_dssp EEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEEC
T ss_pred eccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEc
Confidence 666666655 233 233332 45667777776665321 1245677777777777777777777777788888888
Q ss_pred CCCcccc--cCChhhhhcCCCCCEEEccCccceeecCcc-ccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCcc
Q 037651 480 GENQLSG--NIPAWIGESMPSLSILRLRSNHFNGTIPSE-LCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEI 556 (750)
Q Consensus 480 ~~n~~~~--~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~ 556 (750)
++|++.+ .+|..+.. +++|++|++++|++.+.+|.. +..+++|+.|++++|++++.+|..+
T Consensus 356 ~~N~l~~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--------------- 419 (520)
T 2z7x_B 356 QMNQLKELSKIAEMTTQ-MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--------------- 419 (520)
T ss_dssp CSSCCCBHHHHHHHHTT-CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC---------------
T ss_pred cCCccCccccchHHHhh-CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh---------------
Confidence 8888774 34444543 788888888888888656654 7778888888888888876655421
Q ss_pred ccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCcc-ccCCC
Q 037651 557 YQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPS-MVSIR 635 (750)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~ 635 (750)
. ++|+.|++++|+++ .+|..+..+++|+.|++++|++++ +|.. +..++
T Consensus 420 ---------------------------~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~ 468 (520)
T 2z7x_B 420 ---------------------------P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLT 468 (520)
T ss_dssp ---------------------------C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCT
T ss_pred ---------------------------c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCC
Confidence 1 57888999999988 788877899999999999999984 6655 88889
Q ss_pred CCCeEECcCCcceecCC
Q 037651 636 FLSFLNLSFNNLSGEIP 652 (750)
Q Consensus 636 ~L~~l~ls~N~l~g~ip 652 (750)
+|++|++++|+++|.+|
T Consensus 469 ~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 469 SLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCCEEECCSSCBCCCHH
T ss_pred cccEEECcCCCCcccCC
Confidence 99999999999988654
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.9e-46 Score=416.37 Aligned_cols=442 Identities=20% Similarity=0.205 Sum_probs=349.8
Q ss_pred CCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEE
Q 037651 6 PSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLD 85 (750)
Q Consensus 6 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 85 (750)
++|++|++++|.+.+.++ ..+..+++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWT-SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCH-HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccCh-hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 689999999999999876 56788999999999999999888999999999999999999999 56665 899999999
Q ss_pred CcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCc--cEEEccCCcC--cccCCccccCCC-CC
Q 037651 86 LSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSL--ARLELGYNQL--TGNLPISLGYLK-NL 160 (750)
Q Consensus 86 Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L 160 (750)
+++|.+....+|..++++++|++|++++|.+++ ..+..++ +| ++|++++|.+ .+..|..+..+. +.
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~------~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~ 167 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIA------HLNISKVLLVLGETYGEKEDPEGLQDFNTES 167 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGT------TSCEEEEEEEECTTTTSSCCTTTTTTCCEEE
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch---hhccccc------cceeeEEEeecccccccccccccccccccce
Confidence 999995444678899999999999999999986 3455565 66 9999999999 778888887776 34
Q ss_pred cEEEccCCcccccCCc-cccCCCCCCeeeccccc-------CCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCC
Q 037651 161 RYLELWYNSFLGSIPP-SIGNLTFLEELYLTSNQ-------MNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTS 232 (750)
Q Consensus 161 ~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 232 (750)
..+++++|.+.+.++. .+.++++|+.|++++|. +.+.+| .++.+++|+.|++++|.+.+.........
T Consensus 168 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~--- 243 (520)
T 2z7x_B 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQL--- 243 (520)
T ss_dssp EEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHH---
T ss_pred EEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHH---
Confidence 4678888988775554 57789999999999997 665555 68889999999999988765322211100
Q ss_pred CCEEecccCCCCCceEeccCCCCCCCceeEEEeccccCCCCCChhh-----ccCCcccEEEcCCCCcCCCcC-hHHHhhc
Q 037651 233 LEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWL-----RNQTELTTLVLNGASISDTLP-SWFWQLN 306 (750)
Q Consensus 233 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l-----~~~~~L~~L~L~~n~i~~~~~-~~~~~~~ 306 (750)
....+|++|++++|.+.+.+|.++ ..+++|+.+++++|.+ .+| ..+....
T Consensus 244 ----------------------~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~ 299 (520)
T 2z7x_B 244 ----------------------VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIF 299 (520)
T ss_dssp ----------------------HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHH
T ss_pred ----------------------hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhccc
Confidence 001245666666666666777777 7788888888888877 445 3443321
Q ss_pred CCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCC
Q 037651 307 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFN 386 (750)
Q Consensus 307 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n 386 (750)
+. .+|+.|++++|.+.+ ++ +...+++|++|++++|
T Consensus 300 ~~------------------------------------------~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 300 SN------------------------------------------MNIKNFTVSGTRMVH-ML--CPSKISPFLHLDFSNN 334 (520)
T ss_dssp HT------------------------------------------CCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSS
T ss_pred cc------------------------------------------CceeEEEcCCCcccc-cc--chhhCCcccEEEeECC
Confidence 11 234444444444431 11 1124677888888888
Q ss_pred cCcccCCcCCcCCCCCCeEECccCcccc--ccCccccCCCCCCEEeCCCCccceeCCcc-ccCCCCCCEEEccCCcCcCC
Q 037651 387 SLNGSIPQSVGNLKQLLTLVISNNNLSG--GIPQFLKNISSLYILDMTKNNFSGEIPES-IGSLLTIRFLVLSNNHLSGE 463 (750)
Q Consensus 387 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~ 463 (750)
++++..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|++++.+|.. +..+++|+.|++++|++++.
T Consensus 335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG
T ss_pred ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc
Confidence 8888788888889999999999999986 55677899999999999999999756654 77889999999999999887
Q ss_pred CCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCcc-ccCCCCCcEEEcccCcCCCcCC
Q 037651 464 IPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSE-LCKLSALHILDLSHNNLSGPIP 538 (750)
Q Consensus 464 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p 538 (750)
.|..+. ++|+.|++++|+++ .+|..++. +++|++|++++|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus 415 ~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~-l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 415 IFRCLP--PRIKVLDLHSNKIK-SIPKQVVK-LEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGSCC--TTCCEEECCSSCCC-CCCGGGGG-CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhhhc--ccCCEEECCCCccc-ccchhhhc-CCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 777664 78999999999998 89998884 999999999999999 56665 8899999999999999987543
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.5e-46 Score=426.50 Aligned_cols=449 Identities=19% Similarity=0.267 Sum_probs=282.5
Q ss_pred CCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCc------c------cCCcccCCCCCCCEEECcCCCCccccccc
Q 037651 31 TSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQ------G------DIPDGFASLNSLQLLDLSGNSFLEGQLSR 98 (750)
Q Consensus 31 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~------~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~ 98 (750)
.+++.|+|+++.++|.+|.+++++++|++|+|++|.+. + .+|... +..|+ +++++|. ..+..|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~-l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTF-VDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHH-TCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhh-hccCchh
Confidence 57899999999999999999999999999999999762 2 222222 33444 5555554 3334443
Q ss_pred ccCC-------------------CCCCCEEeCc--CcccccccchhhhccccccCCCCccEEEccCCcCccc--------
Q 037651 99 NLGT-------------------LCNLQTLKLS--LNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGN-------- 149 (750)
Q Consensus 99 ~l~~-------------------l~~L~~L~Ls--~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~-------- 149 (750)
.+.. ...++.+.+. .|++++ +|..++.++ +|++|+|++|.+++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~------~L~~L~Ls~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLT------KLRQFYMGNSPFVAENICEAWEN 229 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCT------TCCEEEEESCCCCGGGBSSSCSC
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhccc------CCCEEECcCCccccccccccccc
Confidence 3321 1122222222 567777 777787777 888888888888875
Q ss_pred ---------CCcccc--CCCCCcEEEccCCcccccCCccccCCCCCCeeeccccc-CCc-ccchhccCC------CCCCE
Q 037651 150 ---------LPISLG--YLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQ-MNG-KFPESFGQL------SAIRV 210 (750)
Q Consensus 150 ---------~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l------~~L~~ 210 (750)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++++ ++|++
T Consensus 230 ~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 888888 88888888888888888888888888888888888888 887 788877776 88888
Q ss_pred EEcccCcCccccCh-hhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCc-ccEEE
Q 037651 211 LELSDNQWEGFITE-AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTE-LTTLV 288 (750)
Q Consensus 211 L~L~~n~l~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~-L~~L~ 288 (750)
|++++|.++ .+|. ..++++++|++|++++|. +.+.++ .+..+.+|++|++++|.+. .+|.++..+++ |++|+
T Consensus 310 L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~---l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 310 IYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ---LEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLS 383 (636)
T ss_dssp EECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC---CEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEE
T ss_pred EECCCCcCC-ccCchhhhccCCCCCEEeCcCCc---Cccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEE
Confidence 888888888 4554 367788888888887743 333444 4444455555666555555 55555655555 66666
Q ss_pred cCCCCcCCCcChHHHhh-cCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCC
Q 037651 289 LNGASISDTLPSWFWQL-NLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPI 367 (750)
Q Consensus 289 L~~n~i~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i 367 (750)
+++|.++ .+|..+... .++|++|++++|.+++.+|..+...... ....++|++|++++|.++ .+
T Consensus 384 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~-------------~~~~~~L~~L~Ls~N~l~-~l 448 (636)
T 4eco_A 384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT-------------PFKGINVSSINLSNNQIS-KF 448 (636)
T ss_dssp CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS-------------CCCCCCEEEEECCSSCCC-SC
T ss_pred ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc-------------cccCCCCCEEECcCCccC-cC
Confidence 6666555 344433221 1245555555555554444322200000 001235666666666666 56
Q ss_pred CcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCcccc--
Q 037651 368 PNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIG-- 445 (750)
Q Consensus 368 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-- 445 (750)
|..++..+++|++|++++|+++...+..+.... ..+.++++|++|++++|+++ .+|..+.
T Consensus 449 p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 510 (636)
T 4eco_A 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN-----------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRAT 510 (636)
T ss_dssp CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT-----------------EECTTGGGCCEEECCSSCCC-BCCGGGSTT
T ss_pred CHHHHccCCCCCEEECCCCCCCCcCHHHhcccc-----------------ccccccCCccEEECcCCcCC-ccChhhhhc
Confidence 665555566666666666666522222222111 00111224555555555555 4444443
Q ss_pred CCCCCCEEEccCCcCcCCCCccccCCCCCCEEec------CCCcccccCChhhhhcCCCCCEEEccCccceeecCccccC
Q 037651 446 SLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDL------GENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCK 519 (750)
Q Consensus 446 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 519 (750)
.+++|+.|++++|++++ +|..+..+++|++|++ ++|++.+.+|..+.. +++|++|++++|++ +.+|..+.
T Consensus 511 ~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l-~~ip~~~~- 586 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL-CPSLTQLQIGSNDI-RKVNEKIT- 586 (636)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG-CSSCCEEECCSSCC-CBCCSCCC-
T ss_pred cCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc-CCCCCEEECCCCcC-CccCHhHh-
Confidence 45555555555555554 4555555555555555 567777778877765 88888888888888 47777665
Q ss_pred CCCCcEEEcccCcCC
Q 037651 520 LSALHILDLSHNNLS 534 (750)
Q Consensus 520 l~~L~~L~Ls~n~l~ 534 (750)
++|+.||+++|++.
T Consensus 587 -~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 587 -PNISVLDIKDNPNI 600 (636)
T ss_dssp -TTCCEEECCSCTTC
T ss_pred -CcCCEEECcCCCCc
Confidence 78888888888776
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.6e-44 Score=409.03 Aligned_cols=515 Identities=21% Similarity=0.209 Sum_probs=389.7
Q ss_pred CcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEEC
Q 037651 7 SIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDL 86 (750)
Q Consensus 7 ~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 86 (750)
++++|+|++|.++++++ ..+.++++|++|+|++|.|+++.+++|.++++|++|+|++|++++..+.+|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCH-HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 79999999999999987 68899999999999999999888889999999999999999999877788999999999999
Q ss_pred cCCCCcccccccccCCCCCCCEEeCcCcccccc-cchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCC----c
Q 037651 87 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGE-VSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNL----R 161 (750)
Q Consensus 87 s~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L----~ 161 (750)
++|+ +++..+..|+++++|++|++++|.+++. .|..++.++ +|++|++++|++++..+..+..+.++ .
T Consensus 132 s~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~------~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 132 VETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT------TCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred CCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccch------hhhhhcccCccccccccccccchhhhhhhhh
Confidence 9999 5655566799999999999999999864 577778777 99999999999998888877765544 4
Q ss_pred EEEccCCcccccCCccccCCCCCCeeecccccCCcc-cchhccCCCCCCEEEcccCcCccc-----cChhhhcCCCCCCE
Q 037651 162 YLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGK-FPESFGQLSAIRVLELSDNQWEGF-----ITEAHLRNLTSLEE 235 (750)
Q Consensus 162 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~-----~~~~~l~~l~~L~~ 235 (750)
.++++.|.+....+..+ ....++.+++++|..... .+..+..++.++...+..+..... .....+..+..+..
T Consensus 205 ~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp EEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence 78999999986655544 455678899998876643 344567788887777655433221 01112222222222
Q ss_pred EecccCCCCCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcC
Q 037651 236 LSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVG 315 (750)
Q Consensus 236 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~ 315 (750)
..+..+..... ....+..+....+++.+++.++.+....+.. ....++.|++.
T Consensus 284 ~~l~~~~~~~~------------------------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~L~~L~l~ 336 (635)
T 4g8a_A 284 EEFRLAYLDYY------------------------LDGIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELV 336 (635)
T ss_dssp EEEEEECCCSC------------------------EEECTTTTGGGTTCSEEEEESCEEEECGGGG---SCCCCSEEEEE
T ss_pred hhhhhhhhccc------------------------ccchhhhhhhhcccccccccccccccccccc---cchhhhhhhcc
Confidence 22222111000 1122334555667777777777665443321 23567888888
Q ss_pred CCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcc--cCC
Q 037651 316 GNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNG--SIP 393 (750)
Q Consensus 316 ~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~--~~~ 393 (750)
+|.+.+..+. .+..++.+++..|......+. ..+++|+.|++++|.+.. ..+
T Consensus 337 ~~~~~~~~~~-----------------------~l~~L~~l~l~~n~~~~~~~~---~~l~~L~~L~ls~n~l~~~~~~~ 390 (635)
T 4g8a_A 337 NCKFGQFPTL-----------------------KLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCS 390 (635)
T ss_dssp SCEESSCCCC-----------------------BCTTCCEEEEESCCSCCBCCC---CBCTTCCEEECCSSCCBEEEECC
T ss_pred cccccCcCcc-----------------------cchhhhhcccccccCCCCccc---ccccccccchhhccccccccccc
Confidence 8776533221 245677788877776533221 237888888888888753 345
Q ss_pred cCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCC-ccccCCCCCCEEEccCCcCcCCCCccccCCC
Q 037651 394 QSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIP-ESIGSLLTIRFLVLSNNHLSGEIPPSLKNCS 472 (750)
Q Consensus 394 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 472 (750)
..+..+.+|+.+++..|.... .+..+..+++|+.++++.|......+ ..+..+++++.++++.|.+.+..+..+..++
T Consensus 391 ~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~ 469 (635)
T 4g8a_A 391 QSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 469 (635)
T ss_dssp HHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred cchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccch
Confidence 556667889999999888774 45567888999999999887765444 4567789999999999999988888899999
Q ss_pred CCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCC
Q 037651 473 LMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPP 552 (750)
Q Consensus 473 ~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~ 552 (750)
.|+.|++++|.+...++...+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|.
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~------------- 536 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF------------- 536 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCG-------------
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChh-------------
Confidence 9999999999865443333334589999999999999988899999999999999999999865443
Q ss_pred CCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCC-ccCcEEEccCCccCcC
Q 037651 553 DTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKL-EWLESLDLSRNKLSGS 626 (750)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~ 626 (750)
.|.++++|++|||++|++++..|+.+..+ ++|+.|+|++|++...
T Consensus 537 -----------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 537 -----------------------------PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp -----------------------------GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred -----------------------------HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 46678889999999999999999999888 6899999999999754
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.7e-45 Score=420.03 Aligned_cols=465 Identities=18% Similarity=0.242 Sum_probs=308.2
Q ss_pred CCCcEEECCCCCCCCCccccccCCCCCCEEeC-cCCCCcccCCcccCCCC-CCCE--------------EECc-CCCCcc
Q 037651 31 TSLQVLDLSNNGFNSTIPHWLFNITNLLSLDL-NSNDLQGDIPDGFASLN-SLQL--------------LDLS-GNSFLE 93 (750)
Q Consensus 31 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~l~-~L~~--------------L~Ls-~n~~~~ 93 (750)
.+++.|+|+++.+.|.+|+.|+++++|++|+| ++|.+.|..|..-.... .+.. ++.. ... ..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~-~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN-LS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGG-SC
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchh-hh
Confidence 46788888888888888888888888888888 77776655332111100 0000 0000 000 00
Q ss_pred ccc-----------ccccCCCCCCCEEeCcC--cccccccchhhhccccccCCCCccEEEccCCcCcc------------
Q 037651 94 GQL-----------SRNLGTLCNLQTLKLSL--NQFRGEVSDFIDGLSECINSSSLARLELGYNQLTG------------ 148 (750)
Q Consensus 94 ~~~-----------~~~l~~l~~L~~L~Ls~--n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~------------ 148 (750)
... +........++.+.+.. |++++ +|..++.++ +|++|+|++|.+++
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~------~L~~L~Ls~N~Lsg~~i~~~~~~~s~ 474 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLT------KLQIIYFANSPFTYDNIAVDWEDANS 474 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCT------TCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCC------CCCEEECcCCcCCCCccccccccccc
Confidence 000 00001222333333333 66666 666676666 77777777777776
Q ss_pred -----cCCcccc--CCCCCcEEEccCCcccccCCccccCCCCCCeeeccccc-CCc-ccchhccCCC-------CCCEEE
Q 037651 149 -----NLPISLG--YLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQ-MNG-KFPESFGQLS-------AIRVLE 212 (750)
Q Consensus 149 -----~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l~-------~L~~L~ 212 (750)
.+|..++ ++++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|..+++++ +|+.|+
T Consensus 475 n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~ 554 (876)
T 4ecn_A 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554 (876)
T ss_dssp HHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEE
T ss_pred ccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEE
Confidence 3888877 88888888888888888888888888888888888887 887 7777666555 888888
Q ss_pred cccCcCccccCh-hhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCc-ccEEEcC
Q 037651 213 LSDNQWEGFITE-AHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTE-LTTLVLN 290 (750)
Q Consensus 213 L~~n~l~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~-L~~L~L~ 290 (750)
+++|.++ .+|. ..+.++++|++|++++|... .++ .+..+++|+.|++++|.+. .+|.++..+++ |+.|+++
T Consensus 555 Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~----~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 555 MGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR----HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp CCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC----BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECC
T ss_pred eeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc----cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECc
Confidence 8888888 4664 46788888888888886542 233 4555666666666666666 66666666666 7777777
Q ss_pred CCCcCCCcChHHHhhc-CCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCc
Q 037651 291 GASISDTLPSWFWQLN-LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPN 369 (750)
Q Consensus 291 ~n~i~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~ 369 (750)
+|.+. .+|..+.... ++|+.|++++|++++.+|..... ......++|+.|++++|.++ .+|.
T Consensus 628 ~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~---------------l~~~~~~~L~~L~Ls~N~L~-~lp~ 690 (876)
T 4ecn_A 628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS---------------MDDYKGINASTVTLSYNEIQ-KFPT 690 (876)
T ss_dssp SSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC---------------TTTCCCCCEEEEECCSSCCC-SCCH
T ss_pred CCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh---------------hccccCCCcCEEEccCCcCC-ccCH
Confidence 77666 4454433221 23666666666666544421100 00001347899999999998 8888
Q ss_pred chhccCCCCCEEecCCCcCcccCCcC-CcC-------CCCCCeEECccCccccccCcccc--CCCCCCEEeCCCCcccee
Q 037651 370 DLGQKTPFLTDLDISFNSLNGSIPQS-VGN-------LKQLLTLVISNNNLSGGIPQFLK--NISSLYILDMTKNNFSGE 439 (750)
Q Consensus 370 ~~~~~~~~L~~L~ls~n~l~~~~~~~-~~~-------l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~ 439 (750)
.++..+++|+.|++++|++. .+|.. +.. +++|++|++++|+++ .+|..+. .+++|+.|+|++|++++
T Consensus 691 ~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~- 767 (876)
T 4ecn_A 691 ELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS- 767 (876)
T ss_dssp HHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred HHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-
Confidence 88877899999999999988 44443 322 237888888888888 6677776 88888888888888885
Q ss_pred CCccccCCCCCCEEEccC------CcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeec
Q 037651 440 IPESIGSLLTIRFLVLSN------NHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTI 513 (750)
Q Consensus 440 ~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~ 513 (750)
+|..+..+++|+.|+|++ |++.+.+|..+.++++|+.|+|++|++ +.+|..+ .++|+.|+|++|++....
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l---~~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL---TPQLYILDIADNPNISID 843 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC---CSSSCEEECCSCTTCEEE
T ss_pred cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh---cCCCCEEECCCCCCCccC
Confidence 787788888888888866 666667777777777777777777777 4677664 357777777777776555
Q ss_pred CccccCCCCCcEEEcccCcCC
Q 037651 514 PSELCKLSALHILDLSHNNLS 534 (750)
Q Consensus 514 p~~l~~l~~L~~L~Ls~n~l~ 534 (750)
+..+.....+..+.|.+|+..
T Consensus 844 ~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 844 VTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CGGGHHHHHTTCCEEECCTTS
T ss_pred hHHccccccchheeecCCCcc
Confidence 555554444555555555443
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.7e-44 Score=407.06 Aligned_cols=470 Identities=19% Similarity=0.237 Sum_probs=271.1
Q ss_pred CCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEe
Q 037651 31 TSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLK 110 (750)
Q Consensus 31 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~ 110 (750)
...+++++++|.+++ +|..+. ++|++|++++|.+.+..|.+|.++++|++|++++|. +++..|..|+++++|++|+
T Consensus 31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEE
Confidence 344677777777764 444343 667777777777776666677777777777777776 4445566677777777777
Q ss_pred CcCcccccccchhhhccccccCCCCccEEEccCCcCcc-cCCccccCCCCCcEEEccCCcccccCCccccCCCCC--Cee
Q 037651 111 LSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTG-NLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFL--EEL 187 (750)
Q Consensus 111 Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L 187 (750)
+++|+++.. |.. .++ +|++|++++|++++ ..|..++++++|++|++++|++.+. .+..+++| ++|
T Consensus 107 Ls~N~l~~l-p~~--~l~------~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L 174 (562)
T 3a79_B 107 VSHNRLQNI-SCC--PMA------SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCI 174 (562)
T ss_dssp CTTSCCCEE-CSC--CCT------TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEE
T ss_pred CCCCcCCcc-Ccc--ccc------cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEE
Confidence 777776632 322 333 67777777777764 3456777777777777777776642 34444444 777
Q ss_pred ecccccC--CcccchhccCCC--CCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEE
Q 037651 188 YLTSNQM--NGKFPESFGQLS--AIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYL 263 (750)
Q Consensus 188 ~Ls~n~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 263 (750)
++++|.+ ++..|..+..+. .+ .+++++|.+.+.++...+..+++|+.+++++|.. .
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~-~------------------ 234 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE-N------------------ 234 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCST-T------------------
T ss_pred EeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEeccccccc-c------------------
Confidence 7777777 666666665543 22 4456666665544443444444444444443210 0
Q ss_pred EeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCC
Q 037651 264 VIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFE 343 (750)
Q Consensus 264 ~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~ 343 (750)
+.........+..+++|+.+++.++.+.+.....+... .
T Consensus 235 ----~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~---------------------~---------------- 273 (562)
T 3a79_B 235 ----CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF---------------------F---------------- 273 (562)
T ss_dssp ----HHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH---------------------H----------------
T ss_pred ----cchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh---------------------h----------------
Confidence 00000011223344444444444433322111110000 0
Q ss_pred CCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccC-cccc-
Q 037651 344 GPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIP-QFLK- 421 (750)
Q Consensus 344 ~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~- 421 (750)
+.++|++|++++|.++|.+|..++... ...++.|+.+++..+.+ .+| ..+.
T Consensus 274 -----~~~~L~~L~l~~n~l~~~ip~~~~~~~--------------------~~~L~~L~~~~~~~~~~--~~p~~~~~~ 326 (562)
T 3a79_B 274 -----WPRPVEYLNIYNLTITERIDREEFTYS--------------------ETALKSLMIEHVKNQVF--LFSKEALYS 326 (562)
T ss_dssp -----TTSSEEEEEEEEEEECSCCCCCCCCCC--------------------SCSCCEEEEEEEEECCC--SSCHHHHHH
T ss_pred -----hcccccEEEEeccEeeccccchhhhcc--------------------cccchheehhhccccee--ecChhhhhh
Confidence 012455555555555555554432100 02222333333333333 122 1111
Q ss_pred --CCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccc--cCChhhhhcCC
Q 037651 422 --NISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG--NIPAWIGESMP 497 (750)
Q Consensus 422 --~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~p~~~~~~l~ 497 (750)
...+|++|++++|.+.... ....+++|++|++++|++++..|..+.++++|++|++++|++++ .+|..+. .++
T Consensus 327 ~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~ 403 (562)
T 3a79_B 327 VFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMS 403 (562)
T ss_dssp HHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCT
T ss_pred hhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCC
Confidence 1145666666666554211 11456677777777777776667777777777777777777763 1222333 377
Q ss_pred CCCEEEccCccceeecCc-cccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccc
Q 037651 498 SLSILRLRSNHFNGTIPS-ELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTL 576 (750)
Q Consensus 498 ~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (750)
+|+.|++++|++++.+|. .+..+++|+.|++++|++++.+|..+
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----------------------------------- 448 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL----------------------------------- 448 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC-----------------------------------
T ss_pred CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh-----------------------------------
Confidence 777777777777764554 36677888888888888876544321
Q ss_pred cccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCcc-ccCCCCCCeEECcCCcceecCCC
Q 037651 577 YLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPS-MVSIRFLSFLNLSFNNLSGEIPT 653 (750)
Q Consensus 577 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~l~ls~N~l~g~ip~ 653 (750)
. ++|++|+|++|+++ .+|..+..+++|+.|++++|++++ +|.. +..+++|+++++++|++.|.+|.
T Consensus 449 -------~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 449 -------P--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp -------C--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred -------c--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 1 46788888888887 677777788888888888888884 5655 88888888888888888876553
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-43 Score=409.37 Aligned_cols=429 Identities=18% Similarity=0.214 Sum_probs=297.5
Q ss_pred CCccEEEccCCcCcccCCccccCCCCCcEEEc-cCCcccccCCccc----------------------------------
Q 037651 134 SSLARLELGYNQLTGNLPISLGYLKNLRYLEL-WYNSFLGSIPPSI---------------------------------- 178 (750)
Q Consensus 134 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~p~~l---------------------------------- 178 (750)
.+++.|+|++|.+.|.+|.+++++++|++|+| ++|.+.|..|...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 47889999999999999999999999999999 8887776533211
Q ss_pred -----------------cCCCCCCeeeccc--ccCCcccchhccCCCCCCEEEcccCcCccc-cChhhhcCCCCCCEEec
Q 037651 179 -----------------GNLTFLEELYLTS--NQMNGKFPESFGQLSAIRVLELSDNQWEGF-ITEAHLRNLTSLEELSL 238 (750)
Q Consensus 179 -----------------~~l~~L~~L~Ls~--n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~l~~l~~L~~L~l 238 (750)
.....++.+.+.. |++++ +|..++++++|+.|++++|.+++. ++.... . .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~-~--------~ 472 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWE-D--------A 472 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS-C--------T
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccc-c--------c
Confidence 1111233333332 55555 566666666666666666666651 111000 0 0
Q ss_pred ccCCCCCceEeccCCCC--CCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCC-cCC-CcChHHHhhc------CC
Q 037651 239 IKTSNSSLSFNISFDWI--PPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGAS-ISD-TLPSWFWQLN------LT 308 (750)
Q Consensus 239 ~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~-i~~-~~~~~~~~~~------~~ 308 (750)
+. ....+.++..+. .+.+|++|++++|.+.+.+|..+..+++|+.|++++|. +++ .+|..+..+. ++
T Consensus 473 s~---n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~ 549 (876)
T 4ecn_A 473 NS---DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549 (876)
T ss_dssp TS---HHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT
T ss_pred cc---ccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCC
Confidence 00 011112444444 56677777777777788888888888888888888887 777 7777765542 47
Q ss_pred CcEEEcCCCcCCCcCCC--ccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCC
Q 037651 309 LDELDVGGNHLSGRIPN--TLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFN 386 (750)
Q Consensus 309 L~~L~l~~n~l~~~~~~--~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n 386 (750)
|+.|++++|+++ .+|. .+.. +++|+.|++++|.++ .+| . +..+++|+.|++++|
T Consensus 550 L~~L~Ls~N~L~-~ip~~~~l~~--------------------L~~L~~L~Ls~N~l~-~lp-~-~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 550 IQIFYMGYNNLE-EFPASASLQK--------------------MVKLGLLDCVHNKVR-HLE-A-FGTNVKLTDLKLDYN 605 (876)
T ss_dssp CCEEECCSSCCC-BCCCHHHHTT--------------------CTTCCEEECTTSCCC-BCC-C-CCTTSEESEEECCSS
T ss_pred ccEEEeeCCcCC-ccCChhhhhc--------------------CCCCCEEECCCCCcc-cch-h-hcCCCcceEEECcCC
Confidence 777777777777 5665 3322 567777777777777 677 3 344777888888888
Q ss_pred cCcccCCcCCcCCCC-CCeEECccCccccccCccccCCCC--CCEEeCCCCccceeCCccc---c--CCCCCCEEEccCC
Q 037651 387 SLNGSIPQSVGNLKQ-LLTLVISNNNLSGGIPQFLKNISS--LYILDMTKNNFSGEIPESI---G--SLLTIRFLVLSNN 458 (750)
Q Consensus 387 ~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~L~~n 458 (750)
++. .+|..+..+++ |++|++++|.+. .+|..+..++. |+.|++++|++.+.+|... . .+++|+.|++++|
T Consensus 606 ~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 606 QIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp CCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred ccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 877 67777777777 888888888877 66766666544 8888888888876555322 1 2347888888888
Q ss_pred cCcCCCCcc-ccCCCCCCEEecCCCcccccCChhhhhcC-------CCCCEEEccCccceeecCcccc--CCCCCcEEEc
Q 037651 459 HLSGEIPPS-LKNCSLMDSLDLGENQLSGNIPAWIGESM-------PSLSILRLRSNHFNGTIPSELC--KLSALHILDL 528 (750)
Q Consensus 459 ~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~~l-------~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L 528 (750)
.++ .+|.. +..+++|+.|+|++|++. .+|..++... ++|+.|+|++|+++ .+|..+. .+++|+.|+|
T Consensus 684 ~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~L 760 (876)
T 4ecn_A 684 EIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDV 760 (876)
T ss_dssp CCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEEC
T ss_pred cCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEe
Confidence 887 45544 347788888888888887 7777665422 27888888888887 6777776 7888888888
Q ss_pred ccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccC------CcCCCC
Q 037651 529 SHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSG------NQLVGK 602 (750)
Q Consensus 529 s~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~------N~l~~~ 602 (750)
++|++++ +|. .+..+++|+.|+|++ |++.+.
T Consensus 761 s~N~L~~-lp~------------------------------------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 761 SYNCFSS-FPT------------------------------------------QPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp CSSCCSS-CCC------------------------------------------GGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred CCCCCCc-cch------------------------------------------hhhcCCCCCEEECCCCCCccccccccc
Confidence 8888875 443 455677778888865 778888
Q ss_pred cccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceec
Q 037651 603 IPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGE 650 (750)
Q Consensus 603 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ 650 (750)
+|..++++++|+.|+|++|++ +.+|..+. ++|+.||+++|++...
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred ChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 888888888888888888888 67888765 5888888888887654
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3e-43 Score=396.97 Aligned_cols=463 Identities=21% Similarity=0.237 Sum_probs=351.1
Q ss_pred CCCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEE
Q 037651 5 LPSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLL 84 (750)
Q Consensus 5 l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 84 (750)
+...+++++++++++++|... .++|++|++++|.+++..+..|.++++|++|+|++|++++..|.+|.++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~----~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDL----PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTS----CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCccCCCCC----CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 345589999999999988622 2899999999999999888999999999999999999998889999999999999
Q ss_pred ECcCCCCcccccccccCCCCCCCEEeCcCcccccc-cchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCC--c
Q 037651 85 DLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGE-VSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNL--R 161 (750)
Q Consensus 85 ~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L--~ 161 (750)
++++|++ + .+|.. .+++|++|++++|++++. .|..++.++ +|++|++++|.+++. .+..+++| +
T Consensus 106 ~Ls~N~l-~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~------~L~~L~L~~n~l~~~---~~~~l~~L~L~ 172 (562)
T 3a79_B 106 DVSHNRL-Q-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT------KLTFLGLSAAKFRQL---DLLPVAHLHLS 172 (562)
T ss_dssp ECTTSCC-C-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT------TCCEEEEECSBCCTT---TTGGGTTSCEE
T ss_pred ECCCCcC-C-ccCcc--ccccCCEEECCCCCccccCchHhhcccC------cccEEecCCCccccC---chhhhhhceee
Confidence 9999994 4 46665 899999999999999984 467888887 999999999999863 45555566 9
Q ss_pred EEEccCCcc--cccCCccccCCC-CCCeeecccccCCcccch-hccCCCCCCEEEcccCcC-----ccccChhhhcCCCC
Q 037651 162 YLELWYNSF--LGSIPPSIGNLT-FLEELYLTSNQMNGKFPE-SFGQLSAIRVLELSDNQW-----EGFITEAHLRNLTS 232 (750)
Q Consensus 162 ~L~L~~n~l--~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l-----~~~~~~~~l~~l~~ 232 (750)
+|++++|.+ ++..|..+..++ ..-.+++++|.+.+.++. .+.++++|+.+++++|.. .+.+ ..+..+++
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~--~~l~~l~~ 250 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL--SELTRGPT 250 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH--HHHHSCSS
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH--HHHhccCc
Confidence 999999999 888888887765 222568899998876554 466789999999999852 2222 25677888
Q ss_pred CCEEecccCCCCCceEeccCCCCCCCceeEEEeccccCCCCCChhh-----ccCCcccEEEcCCCCcCCCcC-hHHHhhc
Q 037651 233 LEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWL-----RNQTELTTLVLNGASISDTLP-SWFWQLN 306 (750)
Q Consensus 233 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l-----~~~~~L~~L~L~~n~i~~~~~-~~~~~~~ 306 (750)
|+.+++.++.................+|++|++++|.+.+.+|.++ ..++.|+.+++..+.+ .+| .++....
T Consensus 251 L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~ 328 (562)
T 3a79_B 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVF 328 (562)
T ss_dssp CEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHH
T ss_pred ceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhh
Confidence 8888887632211000000001112366777777776666666655 4455555555555444 233 1221110
Q ss_pred CCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCC
Q 037651 307 LTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFN 386 (750)
Q Consensus 307 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n 386 (750)
+ ..+|++|++++|.+.. ++ +...+++|++|++++|
T Consensus 329 ~------------------------------------------~~~L~~L~l~~n~~~~-~~--~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 329 A------------------------------------------EMNIKMLSISDTPFIH-MV--CPPSPSSFTFLNFTQN 363 (562)
T ss_dssp H------------------------------------------TCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSS
T ss_pred c------------------------------------------cCcceEEEccCCCccc-cc--CccCCCCceEEECCCC
Confidence 0 1345666666665542 11 1134778888888888
Q ss_pred cCcccCCcCCcCCCCCCeEECccCcccc--ccCccccCCCCCCEEeCCCCccceeCCc-cccCCCCCCEEEccCCcCcCC
Q 037651 387 SLNGSIPQSVGNLKQLLTLVISNNNLSG--GIPQFLKNISSLYILDMTKNNFSGEIPE-SIGSLLTIRFLVLSNNHLSGE 463 (750)
Q Consensus 387 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~ 463 (750)
.+++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|. .+..+++|+.|++++|++++.
T Consensus 364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG
T ss_pred ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc
Confidence 8888888888889999999999999986 3356788999999999999999875664 477889999999999999877
Q ss_pred CCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCcc-ccCCCCCcEEEcccCcCCCcCC
Q 037651 464 IPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSE-LCKLSALHILDLSHNNLSGPIP 538 (750)
Q Consensus 464 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p 538 (750)
.|..+. ++|+.|++++|+++ .+|..++ .+++|++|++++|+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus 444 ~~~~l~--~~L~~L~L~~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 444 VFRCLP--PKVKVLDLHNNRIM-SIPKDVT-HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp GGSSCC--TTCSEEECCSSCCC-CCCTTTT-SSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred hhhhhc--CcCCEEECCCCcCc-ccChhhc-CCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 766554 78999999999998 8999888 5999999999999999 56665 8999999999999999987654
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-40 Score=362.09 Aligned_cols=420 Identities=22% Similarity=0.304 Sum_probs=211.9
Q ss_pred CCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEE
Q 037651 30 FTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTL 109 (750)
Q Consensus 30 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 109 (750)
.++|++|++++|.+ +.+|++++++++|++|++++|.+.+.+|.+++++++|++++++.|. . .++++|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-~-----------~~l~~L 76 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-D-----------RQAHEL 76 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-H-----------HTCSEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh-c-----------cCCCEE
Confidence 35666666666666 4566666666666666666666666666666666666555555443 0 345666
Q ss_pred eCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeec
Q 037651 110 KLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYL 189 (750)
Q Consensus 110 ~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 189 (750)
++++|.+++... . . ++|++|++++|.+++ +|.. +++|++|++++|++.+ +|.. .++|++|++
T Consensus 77 ~l~~~~l~~lp~-~---~------~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L 138 (454)
T 1jl5_A 77 ELNNLGLSSLPE-L---P------PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGV 138 (454)
T ss_dssp ECTTSCCSCCCS-C---C------TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEEC
T ss_pred EecCCccccCCC-C---c------CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEEC
Confidence 666666554221 0 1 156666666666654 4432 2556666666665553 2211 145555555
Q ss_pred ccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEecccc
Q 037651 190 TSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQ 269 (750)
Q Consensus 190 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 269 (750)
++|++++ +| .++++++|++|++++|++++ +|.
T Consensus 139 ~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~--------------------------------------------- 170 (454)
T 1jl5_A 139 SNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD--------------------------------------------- 170 (454)
T ss_dssp CSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCC---------------------------------------------
T ss_pred cCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC---------------------------------------------
Confidence 5555553 44 35555555555555555443 111
Q ss_pred CCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCC
Q 037651 270 LGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLW 349 (750)
Q Consensus 270 ~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~ 349 (750)
. .++|++|++++|.+.+ +|. + ..+++|++|++++|++++ +|..
T Consensus 171 -------~---~~~L~~L~L~~n~l~~-l~~-~-~~l~~L~~L~l~~N~l~~------------------------l~~~ 213 (454)
T 1jl5_A 171 -------L---PPSLEFIAAGNNQLEE-LPE-L-QNLPFLTAIYADNNSLKK------------------------LPDL 213 (454)
T ss_dssp -------C---CTTCCEEECCSSCCSS-CCC-C-TTCTTCCEEECCSSCCSS------------------------CCCC
T ss_pred -------C---cccccEEECcCCcCCc-Ccc-c-cCCCCCCEEECCCCcCCc------------------------CCCC
Confidence 0 1245555555555554 231 2 223456666666665543 2223
Q ss_pred CCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEE
Q 037651 350 SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYIL 429 (750)
Q Consensus 350 ~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 429 (750)
.++|++|++++|.++ .+|. +..+++|++|++++|++++ +|.. +++|++|++++|.+.+ +|.. .++|++|
T Consensus 214 ~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L 282 (454)
T 1jl5_A 214 PLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFL 282 (454)
T ss_dssp CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred cCcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEE
Confidence 457888888888887 6774 3458888888888888875 4432 4788888888888875 4443 3678888
Q ss_pred eCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCC-CCCCEEecCCCcccccCChhhhhcCCCCCEEEccCcc
Q 037651 430 DMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNC-SLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNH 508 (750)
Q Consensus 430 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~ 508 (750)
++++|++++ +|.. .++|+.|++++|++++ ++ .+ ++|++|++++|++++ +|.. +++|+.|++++|+
T Consensus 283 ~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 283 DVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL----PPRLERLIASFNH 348 (454)
T ss_dssp ECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSC
T ss_pred ECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc----CCcCCEEECCCCc
Confidence 888888875 2221 2678888888888874 22 22 478888888888874 6653 5788888888888
Q ss_pred ceeecCccccCCCCCcEEEcccCcCCC--cCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhcc
Q 037651 509 FNGTIPSELCKLSALHILDLSHNNLSG--PIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSL 586 (750)
Q Consensus 509 l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l 586 (750)
++ .+|. .+++|++|++++|++++ .+|..+ +
T Consensus 349 l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l------------------------------------------~-- 380 (454)
T 1jl5_A 349 LA-EVPE---LPQNLKQLHVEYNPLREFPDIPESV------------------------------------------E-- 380 (454)
T ss_dssp CS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTC------------------------------------------C--
T ss_pred cc-cccc---hhhhccEEECCCCCCCcCCCChHHH------------------------------------------H--
Confidence 87 5665 46788888888888886 444422 1
Q ss_pred ccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCc--CCCccccCCCCCCeEECcCCcceecCCC
Q 037651 587 LHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSG--SIPPSMVSIRFLSFLNLSFNNLSGEIPT 653 (750)
Q Consensus 587 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~l~ls~N~l~g~ip~ 653 (750)
+|+.|.+.+.+|.. +++|+.||+++|++++ .+|.+ ++.|.+.+|.+.+++|.
T Consensus 381 ------~L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 381 ------DLRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ------EEECCC---------------------------------------------------------
T ss_pred ------hhhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence 22346666667663 4678888888888886 56643 55667788888877664
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5e-39 Score=353.38 Aligned_cols=392 Identities=20% Similarity=0.216 Sum_probs=206.1
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccC-CcccCCCCCCCEEECcC
Q 037651 10 ELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDI-PDGFASLNSLQLLDLSG 88 (750)
Q Consensus 10 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~ 88 (750)
.++.++++++.+|. .+ ++|++|+|++|.+++..|..|.++++|++|++++|.+.+.+ +.+|.++++|++|++++
T Consensus 14 ~~~c~~~~l~~lp~-l~----~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLHQVPE-LP----AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCSSCCC-CC----TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcccCCC-CC----CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45555555555543 11 45566666666655555555555566666666555554322 34455555555555555
Q ss_pred CCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCC
Q 037651 89 NSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYN 168 (750)
Q Consensus 89 n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 168 (750)
|. +.+..|..|+++++|++|++++|.+++..+.. ..+..+++|++|++++|
T Consensus 89 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------------------------~~~~~l~~L~~L~L~~n 139 (455)
T 3v47_A 89 NQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSG----------------------------NFFKPLTSLEMLVLRDN 139 (455)
T ss_dssp CT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHS----------------------------STTTTCTTCCEEECCSS
T ss_pred Cc-cCccChhhccCcccCCEEeCCCCCCCccccCc----------------------------ccccCcccCCEEECCCC
Confidence 55 33334445555555555555555554432222 11444445555555555
Q ss_pred cccccCCcc-ccCCCCCCeeecccccCCcccchhccCC--CCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCC
Q 037651 169 SFLGSIPPS-IGNLTFLEELYLTSNQMNGKFPESFGQL--SAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSS 245 (750)
Q Consensus 169 ~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~ 245 (750)
++.+..|.. +.++++|++|++++|++++..+..+..+ .+|+.|++++|.+.+..+. .+.
T Consensus 140 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~-~~~----------------- 201 (455)
T 3v47_A 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY-WLG----------------- 201 (455)
T ss_dssp BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTT-CTT-----------------
T ss_pred ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchh-hcc-----------------
Confidence 544444433 4455555555555555554444444433 3455555555554431111 000
Q ss_pred ceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhc--CCCcEEEcCCCcCCCcC
Q 037651 246 LSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLN--LTLDELDVGGNHLSGRI 323 (750)
Q Consensus 246 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~ 323 (750)
. .....+..+++|++|++++|.+.+..|..+.... ++++.|++++|...+..
T Consensus 202 --~------------------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 202 --W------------------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp --H------------------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred --c------------------------cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence 0 0000012334555555555555555555444331 45566666665544321
Q ss_pred CCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchh-ccCCCCCEEecCCCcCcccCCcCCcCCCCC
Q 037651 324 PNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLG-QKTPFLTDLDISFNSLNGSIPQSVGNLKQL 402 (750)
Q Consensus 324 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 402 (750)
.. .+.+.+. .+..+. ...++|++|++++|.+.+..|..+..+++|
T Consensus 256 ~~-------------~~~~~~~---------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 301 (455)
T 3v47_A 256 FG-------------HTNFKDP---------------------DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301 (455)
T ss_dssp TT-------------CCSSCCC---------------------CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred cc-------------hhhhccC---------------------cccccccccccCceEEEecCccccccchhhcccCCCC
Confidence 11 0001000 000000 013456666666666666666666666667
Q ss_pred CeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCC
Q 037651 403 LTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGEN 482 (750)
Q Consensus 403 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 482 (750)
++|++++|.+.+..|..|..+++|++|++++|++++..|..+..+++|++|++++|++++..|..|..+++|++|++++|
T Consensus 302 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC
Confidence 77777777666666666666667777777777666666666666677777777777776666666666777777777777
Q ss_pred cccccCChhhhhcCCCCCEEEccCccceeecC
Q 037651 483 QLSGNIPAWIGESMPSLSILRLRSNHFNGTIP 514 (750)
Q Consensus 483 ~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p 514 (750)
+++ .+|...+..+++|+.|++++|++++..|
T Consensus 382 ~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 382 QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCS-CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccc-cCCHhHhccCCcccEEEccCCCcccCCC
Confidence 766 4554444446677777777777765555
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.3e-38 Score=346.80 Aligned_cols=387 Identities=22% Similarity=0.254 Sum_probs=261.9
Q ss_pred EEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCcCc
Q 037651 35 VLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLN 114 (750)
Q Consensus 35 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n 114 (750)
.++.+++.++. +|. + .++|++|+|++|.+++..|.+|+++++|++|++++|.
T Consensus 14 ~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~------------------------ 65 (455)
T 3v47_A 14 NAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT------------------------ 65 (455)
T ss_dssp EEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS------------------------
T ss_pred ccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCc------------------------
Confidence 45555555542 232 1 1455555555555554445555555555555555554
Q ss_pred cccccc-chhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCcc--ccCCCCCCeeeccc
Q 037651 115 QFRGEV-SDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPS--IGNLTFLEELYLTS 191 (750)
Q Consensus 115 ~l~~~~-~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~ 191 (750)
+.+.+ +..+..++ +|++|++++|.+++..|..++++++|++|++++|++++..|.. +.++++|++|++++
T Consensus 66 -~~~~i~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 138 (455)
T 3v47_A 66 -PGLVIRNNTFRGLS------SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138 (455)
T ss_dssp -TTCEECTTTTTTCT------TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS
T ss_pred -ccceECcccccccc------cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCC
Confidence 33221 22333333 5555555555555555667777778888888888777644444 88888888888888
Q ss_pred ccCCcccchh-ccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEeccccC
Q 037651 192 NQMNGKFPES-FGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQL 270 (750)
Q Consensus 192 n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 270 (750)
|++++..|.. +.++++|++|++++|.+++..+. .+..+
T Consensus 139 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l---------------------------------------- 177 (455)
T 3v47_A 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNF---------------------------------------- 177 (455)
T ss_dssp SBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGG----------------------------------------
T ss_pred CccCccCcccccCCCCcccEEeCCCCcccccChh-hhhcc----------------------------------------
Confidence 8888776765 77888888888888887764333 22211
Q ss_pred CCCCChhhccCCcccEEEcCCCCcCCCcChHHHh-------hcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCC
Q 037651 271 GPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQ-------LNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFE 343 (750)
Q Consensus 271 ~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~ 343 (750)
...+|+.|++++|.+.+..+.++.. ..++|++|++++|++++..|..+...
T Consensus 178 ---------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~------------- 235 (455)
T 3v47_A 178 ---------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA------------- 235 (455)
T ss_dssp ---------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH-------------
T ss_pred ---------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc-------------
Confidence 0134444455555444433322110 12456777777777665554432210
Q ss_pred CCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcC--CCCCCeEECccCccccccCcccc
Q 037651 344 GPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGN--LKQLLTLVISNNNLSGGIPQFLK 421 (750)
Q Consensus 344 ~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~ 421 (750)
...++|+.|++++|...+... ..+.+....+..+.. .++|++|++++|.+.+..|..+.
T Consensus 236 ----~~~~~L~~L~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 296 (455)
T 3v47_A 236 ----IAGTKIQSLILSNSYNMGSSF---------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296 (455)
T ss_dssp ----TTTCCEEEEECTTCTTTSCCT---------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT
T ss_pred ----ccccceeeEeecccccccccc---------------chhhhccCcccccccccccCceEEEecCccccccchhhcc
Confidence 002456666666665543211 111122222222322 46899999999999999999999
Q ss_pred CCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCE
Q 037651 422 NISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSI 501 (750)
Q Consensus 422 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~ 501 (750)
.+++|++|++++|++.+..|..+..+++|++|++++|++++..|..|.++++|++|++++|++++..|..+.. +++|++
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~ 375 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG-LPNLKE 375 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCE
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc-cccccE
Confidence 9999999999999999888999999999999999999999888999999999999999999999766777665 999999
Q ss_pred EEccCccceeecCccccCCCCCcEEEcccCcCCCcCCc
Q 037651 502 LRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPH 539 (750)
Q Consensus 502 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 539 (750)
|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999999976667789999999999999999998873
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.8e-39 Score=350.96 Aligned_cols=375 Identities=26% Similarity=0.336 Sum_probs=182.6
Q ss_pred CccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCC-------------CeeecccccCCcccchh
Q 037651 135 SLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFL-------------EELYLTSNQMNGKFPES 201 (750)
Q Consensus 135 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~l~~~~~~~ 201 (750)
+|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++++++| ++|++++|.+++ +|..
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~ 89 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence 455555555555 3555555555555555555555555555555555554 555555555553 2221
Q ss_pred ccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEeccccCCCCCChhhccC
Q 037651 202 FGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQ 281 (750)
Q Consensus 202 l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~ 281 (750)
.++|++|++++|.+++ +|. ..++|++|++++ |.+.+ +|.. .
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~---------------------------n~l~~-l~~~---~ 130 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDN---------------------------NNLKA-LSDL---P 130 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCS---------------------------SCCSC-CCSC---C
T ss_pred ---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCC---------------------------CccCc-ccCC---C
Confidence 2445555555555544 221 112333333333 32221 1110 1
Q ss_pred CcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecc
Q 037651 282 TELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDN 361 (750)
Q Consensus 282 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n 361 (750)
++|++|++++|.+.+ +|. + ..+++|++|++++|+++ + +|..+++|++|++++|
T Consensus 131 ~~L~~L~L~~n~l~~-lp~-~-~~l~~L~~L~l~~N~l~-----------------------~-lp~~~~~L~~L~L~~n 183 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LPE-L-QNSSFLKIIDVDNNSLK-----------------------K-LPDLPPSLEFIAAGNN 183 (454)
T ss_dssp TTCCEEECCSSCCSS-CCC-C-TTCTTCCEEECCSSCCS-----------------------C-CCCCCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCC-Ccc-c-CCCCCCCEEECCCCcCc-----------------------c-cCCCcccccEEECcCC
Confidence 345555555555554 332 2 22345555555555554 3 3333456777777777
Q ss_pred cccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCC
Q 037651 362 LFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIP 441 (750)
Q Consensus 362 ~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 441 (750)
.+++ +| .+ ..+++|++|++++|.+++ +|.. .++|++|++++|.+. .+|. +..+++|++|++++|++++ +|
T Consensus 184 ~l~~-l~-~~-~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~ 253 (454)
T 1jl5_A 184 QLEE-LP-EL-QNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LP 253 (454)
T ss_dssp CCSS-CC-CC-TTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CC
T ss_pred cCCc-Cc-cc-cCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cc
Confidence 6663 55 22 346777777777777664 3322 246777777777766 4553 6677777777777777663 44
Q ss_pred ccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCC-
Q 037651 442 ESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKL- 520 (750)
Q Consensus 442 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l- 520 (750)
.. +++|+.|++++|++++ +|.. .++|+.|++++|++++ +|.. .++|+.|++++|++++ ++ .+
T Consensus 254 ~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~----~~~L~~L~l~~N~l~~-i~----~~~ 316 (454)
T 1jl5_A 254 DL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL----PPNLYYLNASSNEIRS-LC----DLP 316 (454)
T ss_dssp SC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC----CTTCCEEECCSSCCSE-EC----CCC
T ss_pred cc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc----CCcCCEEECcCCcCCc-cc----CCc
Confidence 32 3667777777777764 4432 3567777777777763 3321 3567777777777763 22 22
Q ss_pred CCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCC
Q 037651 521 SALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLV 600 (750)
Q Consensus 521 ~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~ 600 (750)
++|+.|++++|++++ +|.. +++|++|++++|+++
T Consensus 317 ~~L~~L~Ls~N~l~~-lp~~---------------------------------------------~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE-LPAL---------------------------------------------PPRLERLIASFNHLA 350 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---------------------------------------------CTTCCEEECCSSCCS
T ss_pred CcCCEEECCCCcccc-cccc---------------------------------------------CCcCCEEECCCCccc
Confidence 467777777777664 3321 245666677777666
Q ss_pred CCcccccCCCccCcEEEccCCccCc--CCCccccCC-------------CCCCeEECcCCccee--cCCCC
Q 037651 601 GKIPTQIGKLEWLESLDLSRNKLSG--SIPPSMVSI-------------RFLSFLNLSFNNLSG--EIPTA 654 (750)
Q Consensus 601 ~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l-------------~~L~~l~ls~N~l~g--~ip~~ 654 (750)
.+|. .+++|+.|++++|++++ .+|.++..+ ++|++|++++|+++| .+|..
T Consensus 351 -~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 351 -EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp -CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------
T ss_pred -cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence 3554 35666677777777666 566666555 789999999999998 77754
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.6e-36 Score=330.56 Aligned_cols=359 Identities=18% Similarity=0.188 Sum_probs=206.3
Q ss_pred CCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCC
Q 037651 26 PSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCN 105 (750)
Q Consensus 26 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 105 (750)
.+.++++|++|++++|.+++. | .+..+++|++|++++|++++. | ++.+++|++|++++|. +++ ++ ++++++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~-l~~-~~--~~~l~~ 107 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNK-LTN-LD--VTPLTK 107 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSC-CSC-CC--CTTCTT
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCC-Cce-ee--cCCCCc
Confidence 345566677777777766653 3 466666777777777766643 3 6666666677776666 332 22 566666
Q ss_pred CCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCC
Q 037651 106 LQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLE 185 (750)
Q Consensus 106 L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 185 (750)
|++|++++|++++. + ++.++ +|++|++++|++++ ++ ++.+++|++|++++|...+.+ .++.+++|+
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~------~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNP------LLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCT------TCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred CCEEECCCCcCCee-c--CCCCC------cCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 66666666666653 2 33333 66666666666664 22 556666666666666444333 255566666
Q ss_pred eeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEe
Q 037651 186 ELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVI 265 (750)
Q Consensus 186 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 265 (750)
+|++++|++++ +| ++.+++|+.|++++|.+++. .++.
T Consensus 174 ~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~----~l~~------------------------------------ 210 (457)
T 3bz5_A 174 TLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL----DLNQ------------------------------------ 210 (457)
T ss_dssp EEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC----CCTT------------------------------------
T ss_pred EEECCCCccce-ec--cccCCCCCEEECcCCcCCee----cccc------------------------------------
Confidence 66666666654 23 55556666666666655442 1233
Q ss_pred ccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCC
Q 037651 266 RYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGP 345 (750)
Q Consensus 266 ~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~ 345 (750)
+++|++|++++|.+++ +| + ..+++|++|++++|++++..+
T Consensus 211 ---------------l~~L~~L~Ls~N~l~~-ip--~-~~l~~L~~L~l~~N~l~~~~~--------------------- 250 (457)
T 3bz5_A 211 ---------------NIQLTFLDCSSNKLTE-ID--V-TPLTQLTYFDCSVNPLTELDV--------------------- 250 (457)
T ss_dssp ---------------CTTCSEEECCSSCCSC-CC--C-TTCTTCSEEECCSSCCSCCCC---------------------
T ss_pred ---------------CCCCCEEECcCCcccc-cC--c-cccCCCCEEEeeCCcCCCcCH---------------------
Confidence 3334444444444433 12 1 112344445554444443211
Q ss_pred CCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCC
Q 037651 346 LPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISS 425 (750)
Q Consensus 346 ~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 425 (750)
..+++|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. ...+
T Consensus 251 --~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~ 308 (457)
T 3bz5_A 251 --STLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAG 308 (457)
T ss_dssp --TTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCC
T ss_pred --HHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCc
Confidence 11344555544332 24445555555554444 34456666666666666555543 3345
Q ss_pred CCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEcc
Q 037651 426 LYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLR 505 (750)
Q Consensus 426 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls 505 (750)
|+.|++++| ++|+.|++++|++++. + +..+++|+.|++++|++++ ++.|..|+++
T Consensus 309 L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~ 363 (457)
T 3bz5_A 309 ITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPAL 363 (457)
T ss_dssp CSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGG
T ss_pred ceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC---------cccccccccc
Confidence 555555544 5677778888887763 3 7777888888888888773 3456666778
Q ss_pred CccceeecCccccCCCCCcEEEcccCcCCCcCCcccc
Q 037651 506 SNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVG 542 (750)
Q Consensus 506 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 542 (750)
+|.+.|. ..+..|+.+++++|+++|.+|..+.
T Consensus 364 ~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 364 NNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp GTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred CCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 8888766 2445667778888888888886543
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.5e-36 Score=329.05 Aligned_cols=365 Identities=19% Similarity=0.178 Sum_probs=254.4
Q ss_pred CCCCCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCC
Q 037651 3 SKLPSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQ 82 (750)
Q Consensus 3 ~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 82 (750)
.++++|++|++++|.++++| .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++++++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT---TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred hHcCCCCEEEccCCCcccCh---hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 45789999999999999985 478899999999999999875 3 89999999999999999964 3 89999999
Q ss_pred EEECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcE
Q 037651 83 LLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRY 162 (750)
Q Consensus 83 ~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 162 (750)
+|++++|+ +++ ++ ++.+++|++|++++|++++. + ++.++ +|++|++++|...+.+ .++.+++|++
T Consensus 110 ~L~L~~N~-l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~------~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 110 YLNCDTNK-LTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNT------QLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp EEECCSSC-CSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCT------TCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred EEECCCCc-CCe-ec--CCCCCcCCEEECCCCcccee-c--cccCC------cCCEEECCCCCccccc--ccccCCcCCE
Confidence 99999999 443 34 89999999999999999975 2 55555 9999999999766555 5889999999
Q ss_pred EEccCCcccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCC
Q 037651 163 LELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTS 242 (750)
Q Consensus 163 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~ 242 (750)
|++++|++++ +| ++.+++|++|++++|++++. .++.+++|+.|++++|++++ +| +..+++|++|++++|.
T Consensus 175 L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 175 LDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp EECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSC
T ss_pred EECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCc
Confidence 9999999996 45 88999999999999999975 38899999999999999987 44 5667777777777643
Q ss_pred CCCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCc
Q 037651 243 NSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGR 322 (750)
Q Consensus 243 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 322 (750)
. .+.. +..+++|+.|++++| +|+.+++++|.+.+.
T Consensus 245 l---------------------------~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 245 L---------------------------TELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIY 279 (457)
T ss_dssp C---------------------------SCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCE
T ss_pred C---------------------------CCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCc
Confidence 3 2211 234555666665543 345556666665555
Q ss_pred CCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCC
Q 037651 323 IPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQL 402 (750)
Q Consensus 323 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 402 (750)
+|. .. +++|+.|++++|...+.+|.. .++|+.|++++| ++|
T Consensus 280 ~~~-~~---------------------l~~L~~L~Ls~n~~l~~l~~~----~~~L~~L~l~~~-------------~~L 320 (457)
T 3bz5_A 280 FQA-EG---------------------CRKIKELDVTHNTQLYLLDCQ----AAGITELDLSQN-------------PKL 320 (457)
T ss_dssp EEC-TT---------------------CTTCCCCCCTTCTTCCEEECT----TCCCSCCCCTTC-------------TTC
T ss_pred ccc-cc---------------------cccCCEEECCCCcccceeccC----CCcceEechhhc-------------ccC
Confidence 442 11 344555555555544444421 233444443332 455
Q ss_pred CeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCC
Q 037651 403 LTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGEN 482 (750)
Q Consensus 403 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 482 (750)
++|++++|++++. + +..+++|+.|++++|++++ ++.|..|++++|.++|. ..+..|..+++++|
T Consensus 321 ~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 321 VYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNN 384 (457)
T ss_dssp CEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTT
T ss_pred CEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccC
Confidence 5566666665542 2 5555566666666665553 13344445555555543 12334555566666
Q ss_pred cccccCChhhhhcCCCCCE
Q 037651 483 QLSGNIPAWIGESMPSLSI 501 (750)
Q Consensus 483 ~~~~~~p~~~~~~l~~L~~ 501 (750)
+++|.+|..+.....++..
T Consensus 385 ~l~g~ip~~~~~~~~~~~~ 403 (457)
T 3bz5_A 385 SLTIAVSPDLLDQFGNPMN 403 (457)
T ss_dssp BEEEECCTTCBCTTSCCCE
T ss_pred cEEEEcChhHhcccCceee
Confidence 6666666554433333333
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.3e-35 Score=320.85 Aligned_cols=344 Identities=28% Similarity=0.349 Sum_probs=189.3
Q ss_pred CCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEE
Q 037651 30 FTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTL 109 (750)
Q Consensus 30 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 109 (750)
+++++.|+++++.+.. +| .+..+++|++|++++|.+.+..+ +.++++|++|++++|. +.+. +. ++++++|++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~-~~-~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ-IADI-TP-LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCC-GG-GTTCTTCCEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCc-cccC-hh-hcCCCCCCEE
Confidence 4567777777776654 33 26667777777777777764433 6777777777777776 3332 22 6677777777
Q ss_pred eCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeec
Q 037651 110 KLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYL 189 (750)
Q Consensus 110 ~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 189 (750)
++++|.+++..+ +..++ +|++|++++|.+.+ ++ .+..+++|++|+++ |.+.+. + .+.++++|++|++
T Consensus 118 ~L~~n~l~~~~~--~~~l~------~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l 184 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLT------NLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDI 184 (466)
T ss_dssp ECCSSCCCCCGG--GTTCT------TCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEEC
T ss_pred ECCCCCCCCChH--HcCCC------CCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEEC
Confidence 777777665533 44444 77777777777663 33 46777777777775 334332 2 2677777777777
Q ss_pred ccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEecccc
Q 037651 190 TSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQ 269 (750)
Q Consensus 190 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 269 (750)
++|.+++. ..+.++++|++|++++|.+.+..+ ++.+++|++|++++|..
T Consensus 185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l-------------------------- 233 (466)
T 1o6v_A 185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQL-------------------------- 233 (466)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCC--------------------------
T ss_pred cCCcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCc--------------------------
Confidence 77777643 246777778888887777765322 44455555555554322
Q ss_pred CCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCC
Q 037651 270 LGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLW 349 (750)
Q Consensus 270 ~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~ 349 (750)
.+. ..+..+++|++|++++|.+.+..+ + ..
T Consensus 234 -~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~-~~-------------------------------------------- 263 (466)
T 1o6v_A 234 -KDI--GTLASLTNLTDLDLANNQISNLAP--L-SG-------------------------------------------- 263 (466)
T ss_dssp -CCC--GGGGGCTTCSEEECCSSCCCCCGG--G-TT--------------------------------------------
T ss_pred -ccc--hhhhcCCCCCEEECCCCccccchh--h-hc--------------------------------------------
Confidence 110 123344444444444444433221 0 11
Q ss_pred CCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEE
Q 037651 350 SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYIL 429 (750)
Q Consensus 350 ~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 429 (750)
+++|++|++++|.+++. +. ...+++|++|++++|++.+..+ +..+++|++|++++|.+.+..| +..+++|++|
T Consensus 264 l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 264 LTKLTELKLGANQISNI-SP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp CTTCSEEECCSSCCCCC-GG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred CCCCCEEECCCCccCcc-cc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 23444444444444421 11 1224455555555555443322 4445555555555555554433 4455555555
Q ss_pred eCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCccc
Q 037651 430 DMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLS 485 (750)
Q Consensus 430 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 485 (750)
++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 5555555432 234455555555555555554443 455555555555555554
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.4e-34 Score=316.19 Aligned_cols=346 Identities=29% Similarity=0.391 Sum_probs=212.8
Q ss_pred CCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccC
Q 037651 53 NITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECIN 132 (750)
Q Consensus 53 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~ 132 (750)
.+++++.|+++++.+.. +| .+..+++|++|++++|. +.+. +. +.++++|++|++++|.+.+..+ ++.++
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~-l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~---- 112 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQ-LTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLT---- 112 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSC-CCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCT----
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCc-cCCc-hh-hhccccCCEEECCCCccccChh--hcCCC----
Confidence 45677788888777763 44 36777778888887777 3333 33 7777777777777777765544 55544
Q ss_pred CCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEE
Q 037651 133 SSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLE 212 (750)
Q Consensus 133 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 212 (750)
+|++|++++|.+++. +. +.++++|++|++++|.+.+ ++ .+.++++|++|+++ |.+.+.. .+.++++|+.|+
T Consensus 113 --~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~ 183 (466)
T 1o6v_A 113 --NLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLD 183 (466)
T ss_dssp --TCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEE
T ss_pred --CCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEE
Confidence 677777777776643 22 6666677777777666653 22 36666666666664 3443222 255666666666
Q ss_pred cccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCC
Q 037651 213 LSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGA 292 (750)
Q Consensus 213 L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n 292 (750)
+++|.+.+. + . +..+++|++|++++|
T Consensus 184 l~~n~l~~~-~--~---------------------------------------------------l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 184 ISSNKVSDI-S--V---------------------------------------------------LAKLTNLESLIATNN 209 (466)
T ss_dssp CCSSCCCCC-G--G---------------------------------------------------GGGCTTCSEEECCSS
T ss_pred CcCCcCCCC-h--h---------------------------------------------------hccCCCCCEEEecCC
Confidence 666655431 1 1 333444444444444
Q ss_pred CcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchh
Q 037651 293 SISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLG 372 (750)
Q Consensus 293 ~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~ 372 (750)
.+.+..| ...+++|++|++++|++++. +. +. .+++|+.|++++|.+++..+ .
T Consensus 210 ~l~~~~~---~~~l~~L~~L~l~~n~l~~~-~~-l~--------------------~l~~L~~L~l~~n~l~~~~~---~ 261 (466)
T 1o6v_A 210 QISDITP---LGILTNLDELSLNGNQLKDI-GT-LA--------------------SLTNLTDLDLANNQISNLAP---L 261 (466)
T ss_dssp CCCCCGG---GGGCTTCCEEECCSSCCCCC-GG-GG--------------------GCTTCSEEECCSSCCCCCGG---G
T ss_pred ccccccc---ccccCCCCEEECCCCCcccc-hh-hh--------------------cCCCCCEEECCCCccccchh---h
Confidence 4444333 11234555555555554421 11 00 14566677777776664333 3
Q ss_pred ccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCE
Q 037651 373 QKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRF 452 (750)
Q Consensus 373 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 452 (750)
..+++|++|++++|.+.+..+ +..+++|++|++++|++.+..+ +..+++|++|++++|++++..| +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 347777788887777775544 6667777777777777775433 6677777777777777775544 566777777
Q ss_pred EEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCcccee
Q 037651 453 LVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG 511 (750)
Q Consensus 453 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~ 511 (750)
|++++|++++. ..+..+++|+.|++++|++++..| +. .+++|+.|++++|++++
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LA-NLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GT-TCTTCCEEECCCEEEEC
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hh-cCCCCCEEeccCCcccC
Confidence 77777777754 356777777777777777775554 33 37777777777777764
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=323.94 Aligned_cols=235 Identities=22% Similarity=0.190 Sum_probs=190.4
Q ss_pred cCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEE
Q 037651 374 KTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFL 453 (750)
Q Consensus 374 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 453 (750)
.+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 205 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence 47889999999999998888899999999999999999987777778899999999999999998878888889999999
Q ss_pred EccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcC
Q 037651 454 VLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 533 (750)
Q Consensus 454 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 533 (750)
++++|...+.+|.......+|+.|++++|+++ .+|...+..+++|+.|++++|++++..+..+..+++|+.|+|++|++
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp EEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred eCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence 99998887777777777778999999999988 67766555689999999999999877788888899999999999988
Q ss_pred CCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccC
Q 037651 534 SGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWL 613 (750)
Q Consensus 534 ~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 613 (750)
++..|. .|..+++|+.|+|++|++++..+..|..+++|
T Consensus 285 ~~~~~~------------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 322 (477)
T 2id5_A 285 AVVEPY------------------------------------------AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322 (477)
T ss_dssp SEECTT------------------------------------------TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred ceECHH------------------------------------------HhcCcccCCEEECCCCcCceeCHhHcCCCccc
Confidence 865443 46667788899999999988777788889999
Q ss_pred cEEEccCCccCcCCCccccCCCCCCeEECcCCcceecCC
Q 037651 614 ESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGEIP 652 (750)
Q Consensus 614 ~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip 652 (750)
+.|++++|++....+.. .-......+++.++...|.-|
T Consensus 323 ~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 323 ETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEES
T ss_pred CEEEccCCCccCccchH-hHHhhhhccccCccCceeCCc
Confidence 99999999887543321 111223334556666555545
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=319.69 Aligned_cols=158 Identities=27% Similarity=0.295 Sum_probs=94.5
Q ss_pred CCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCC
Q 037651 56 NLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSS 135 (750)
Q Consensus 56 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~ 135 (750)
++++|+|++|++++..+..|.++++|++|+|++|. +.+..|..|.++++|++|++++|.+++..+..|..++ +
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~ 105 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS------N 105 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT------T
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC------C
Confidence 44444444444444444444445555555555444 3333344455555555555555555544444444444 5
Q ss_pred ccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEccc
Q 037651 136 LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSD 215 (750)
Q Consensus 136 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 215 (750)
|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|++++..+..+.++++|+.|++++
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence 66666666666555566666677777777777777766666777777777777777777766556677777777777777
Q ss_pred CcCcc
Q 037651 216 NQWEG 220 (750)
Q Consensus 216 n~l~~ 220 (750)
|.+.+
T Consensus 186 n~i~~ 190 (477)
T 2id5_A 186 LNINA 190 (477)
T ss_dssp CCCCE
T ss_pred CcCcE
Confidence 77665
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.6e-34 Score=294.48 Aligned_cols=253 Identities=31% Similarity=0.502 Sum_probs=220.1
Q ss_pred CCCcEEEeecccccC--CCCcchhccCCCCCEEecCC-CcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCC
Q 037651 351 SNLTKLYLRDNLFSG--PIPNDLGQKTPFLTDLDISF-NSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLY 427 (750)
Q Consensus 351 ~~L~~L~l~~n~l~~--~i~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 427 (750)
.+++.|++++|.+++ .+|..+.. +++|++|++++ |.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578899999999988 78877765 89999999995 888888898899999999999999999888888899999999
Q ss_pred EEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCC-CCCEEecCCCcccccCChhhhhcCCCCCEEEccC
Q 037651 428 ILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCS-LMDSLDLGENQLSGNIPAWIGESMPSLSILRLRS 506 (750)
Q Consensus 428 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~ 506 (750)
+|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++.+.+|..+.. ++ |+.|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-CC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-Cc-ccEEECcC
Confidence 999999999888888898899999999999999888898888887 8999999999998888888765 65 99999999
Q ss_pred ccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhcc
Q 037651 507 NHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSL 586 (750)
Q Consensus 507 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l 586 (750)
|++++.+|..+..+++|+.|++++|++++.+|. +..+
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------------------------------------~~~l 243 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-------------------------------------------VGLS 243 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-------------------------------------------CCCC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-------------------------------------------cccc
Confidence 999988888889999999999999988765442 4556
Q ss_pred ccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCc-ceec
Q 037651 587 LHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNN-LSGE 650 (750)
Q Consensus 587 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~-l~g~ 650 (750)
++|++|+|++|++++.+|..++.+++|+.|++++|+++|.+|.. ..+++|+.+++++|+ ++|.
T Consensus 244 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 78889999999998889999999999999999999999888886 788889999999997 6663
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-32 Score=292.92 Aligned_cols=128 Identities=23% Similarity=0.321 Sum_probs=71.6
Q ss_pred CCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEe
Q 037651 351 SNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILD 430 (750)
Q Consensus 351 ~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 430 (750)
++|+.|++++|.+++. . ....+++|++|++++|.+.+..|..+..+++|++|++++|++++ +|..+..+++|++|+
T Consensus 226 ~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD 301 (390)
T ss_dssp SSCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEE
T ss_pred ccccEEECCCCCCccc--H-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEE
Confidence 3555566666555532 1 22335666666666666665556666666666666666666653 334445556666666
Q ss_pred CCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccc
Q 037651 431 MTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG 486 (750)
Q Consensus 431 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 486 (750)
+++|++. .+|..+..+++|+.|++++|+++.. + +..+++|+.|++++|++.+
T Consensus 302 L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 302 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 6666665 4444455556666666666665532 2 4455555556666555553
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.5e-33 Score=288.64 Aligned_cols=252 Identities=32% Similarity=0.485 Sum_probs=234.2
Q ss_pred CCCCEEecCCCcCcc--cCCcCCcCCCCCCeEECcc-CccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCE
Q 037651 376 PFLTDLDISFNSLNG--SIPQSVGNLKQLLTLVISN-NNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRF 452 (750)
Q Consensus 376 ~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 452 (750)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|++++.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCC-CCCEEEccCccceeecCccccCCCCCcEEEcccC
Q 037651 453 LVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMP-SLSILRLRSNHFNGTIPSELCKLSALHILDLSHN 531 (750)
Q Consensus 453 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 531 (750)
|++++|.+++.+|..+..+++|++|++++|++++.+|..+.. ++ +|+.|++++|++++.+|..+..++ |+.|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999999999999999999999999999999999999886 76 999999999999999999999997 999999999
Q ss_pred cCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCc
Q 037651 532 NLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLE 611 (750)
Q Consensus 532 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 611 (750)
++++.+|. .+..+++|+.|+|++|++++.+|. +..++
T Consensus 208 ~l~~~~~~------------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~ 244 (313)
T 1ogq_A 208 MLEGDASV------------------------------------------LFGSDKNTQKIHLAKNSLAFDLGK-VGLSK 244 (313)
T ss_dssp EEEECCGG------------------------------------------GCCTTSCCSEEECCSSEECCBGGG-CCCCT
T ss_pred cccCcCCH------------------------------------------HHhcCCCCCEEECCCCceeeecCc-ccccC
Confidence 99876554 466788899999999999987776 88999
Q ss_pred cCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceecCCCCCCCCCcccccccCCCCCC
Q 037651 612 WLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGEIPTANQFQTSLIRQFMRIPGAD 672 (750)
Q Consensus 612 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~~~ 672 (750)
+|+.|++++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.+||..+
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 9999999999999999999999999999999999999999998777777777788887554
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.7e-32 Score=290.44 Aligned_cols=311 Identities=23% Similarity=0.233 Sum_probs=248.6
Q ss_pred CCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEE
Q 037651 257 PFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVD 336 (750)
Q Consensus 257 ~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~ 336 (750)
..+++.++++++.+....+..+..+++|++|++++|.+.+..+..+.. +++|++|++++|.+++..|..+.
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~-------- 114 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQ-------- 114 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTT--------
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccC-CCCcCEEECCCCCCCcCCHHHhc--------
Confidence 345666666666665555555677777777777777776555444433 35667777776666654443322
Q ss_pred CCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCcccccc
Q 037651 337 LSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGI 416 (750)
Q Consensus 337 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 416 (750)
.+++|++|++++|.++ .+|...+..+++|++|++++|++.+..+..+..+++|++|++++|.+++.
T Consensus 115 ------------~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~- 180 (390)
T 3o6n_A 115 ------------NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV- 180 (390)
T ss_dssp ------------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-
T ss_pred ------------CCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-
Confidence 1578999999999998 78887777799999999999999988888899999999999999999865
Q ss_pred CccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcC
Q 037651 417 PQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESM 496 (750)
Q Consensus 417 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l 496 (750)
.+..+++|+.|++++|.+++. ...++|+.|++++|.++.. |.. ..++|+.|++++|++++ . .++.. +
T Consensus 181 --~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~-~-~~l~~-l 247 (390)
T 3o6n_A 181 --DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTD-T-AWLLN-Y 247 (390)
T ss_dssp --CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCC-C-GGGGG-C
T ss_pred --ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCcc-c-HHHcC-C
Confidence 366789999999999998742 3457899999999999854 432 35789999999999984 3 44544 9
Q ss_pred CCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccc
Q 037651 497 PSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTL 576 (750)
Q Consensus 497 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (750)
++|++|++++|.+.+..|..+..+++|+.|++++|++++. |
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~-------------------------------------- 288 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-N-------------------------------------- 288 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-E--------------------------------------
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-C--------------------------------------
Confidence 9999999999999998899999999999999999998742 2
Q ss_pred cccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceec
Q 037651 577 YLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGE 650 (750)
Q Consensus 577 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ 650 (750)
..+..+++|++|+|++|+++ .+|..++.+++|+.|++++|++++. | +..+++|++|++++|++.|.
T Consensus 289 ----~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 289 ----LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp ----CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ----cccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 23456788999999999998 6788889999999999999999854 4 77889999999999999885
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6e-32 Score=306.23 Aligned_cols=331 Identities=22% Similarity=0.230 Sum_probs=257.7
Q ss_pred CceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEEC
Q 037651 258 FKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDL 337 (750)
Q Consensus 258 ~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l 337 (750)
.+++.++++++.+....+..+..+++|++|++++|.+.+..|..+.. +++|++|++++|.+++..|..+..
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~-------- 121 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQN-------- 121 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC-CCCCCEEECCCCcCCCCCHHHHcC--------
Confidence 34566666666665555666677777777777777776655544443 356677777666666544433221
Q ss_pred CCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccC
Q 037651 338 SSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIP 417 (750)
Q Consensus 338 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 417 (750)
+++|++|++++|.++ .+|..++..+++|++|++++|.+++..|..|..+++|++|++++|.+.+.
T Consensus 122 ------------l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-- 186 (597)
T 3oja_B 122 ------------VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-- 186 (597)
T ss_dssp ------------CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--
T ss_pred ------------CCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--
Confidence 678999999999998 77777766799999999999999999999999999999999999999865
Q ss_pred ccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCC
Q 037651 418 QFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMP 497 (750)
Q Consensus 418 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~ 497 (750)
.+..+++|+.|++++|.+.+ +...++|+.|++++|.++...+. + .++|+.|++++|.+++ +.++.. ++
T Consensus 187 -~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~-l~ 254 (597)
T 3oja_B 187 -DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLN-YP 254 (597)
T ss_dssp -CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGG-CT
T ss_pred -ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--Chhhcc-CC
Confidence 25678899999999999874 33457899999999999844332 2 3689999999999985 355554 99
Q ss_pred CCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeeccccc
Q 037651 498 SLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLY 577 (750)
Q Consensus 498 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (750)
+|+.|++++|.+.+..|..+..+++|+.|+|++|.+++ +|
T Consensus 255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~--------------------------------------- 294 (597)
T 3oja_B 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LN--------------------------------------- 294 (597)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EE---------------------------------------
T ss_pred CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CC---------------------------------------
Confidence 99999999999999999999999999999999999985 22
Q ss_pred ccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceecCCCCCCC
Q 037651 578 LMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGEIPTANQF 657 (750)
Q Consensus 578 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~~~~~ 657 (750)
..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++. | +..+++|++|++++|++.|..+. ..+
T Consensus 295 ---~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~ 366 (597)
T 3oja_B 295 ---LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALF 366 (597)
T ss_dssp ---CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHT
T ss_pred ---cccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHH
Confidence 23456788999999999999 6888899999999999999999864 3 67789999999999999986332 223
Q ss_pred CCcccccccCCCCCC
Q 037651 658 QTSLIRQFMRIPGAD 672 (750)
Q Consensus 658 ~~~~~~~~~~n~~~~ 672 (750)
..+....+.+++..|
T Consensus 367 ~~~~~~~~~~~~~~C 381 (597)
T 3oja_B 367 RNVARPAVDDADQHC 381 (597)
T ss_dssp TTCCTTTBCCCCCCC
T ss_pred HHHhhhccccccccC
Confidence 334444455555444
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-31 Score=302.83 Aligned_cols=128 Identities=24% Similarity=0.331 Sum_probs=69.5
Q ss_pred CCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEe
Q 037651 351 SNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILD 430 (750)
Q Consensus 351 ~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 430 (750)
++|+.|++++|.+++. ..+ ..+++|+.|++++|.+.+..|..|..+++|++|++++|.+++ +|..+..+++|+.|+
T Consensus 232 ~~L~~L~L~~n~l~~~--~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 232 VELTILKLQHNNLTDT--AWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD 307 (597)
T ss_dssp SCCCEEECCSSCCCCC--GGG-GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCC--hhh-ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEE
Confidence 3555666666655531 222 235566666666666665555556566666666666666553 344444555566666
Q ss_pred CCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccc
Q 037651 431 MTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG 486 (750)
Q Consensus 431 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 486 (750)
|++|.++ .+|..+..+++|+.|++++|.+++. + +..+++|+.|++++|++.+
T Consensus 308 Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence 6666555 4455555555555555555555532 2 3444555555555555543
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=9.9e-31 Score=276.25 Aligned_cols=285 Identities=24% Similarity=0.388 Sum_probs=225.8
Q ss_pred hccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEE
Q 037651 278 LRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLY 357 (750)
Q Consensus 278 l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~ 357 (750)
+..+++|++|++++|.+.+..+ ...+++|++|++++|.+++ ++. +. .+++|++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~-~~~-~~--------------------~l~~L~~L~ 116 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITD-ISA-LQ--------------------NLTNLRELY 116 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC-CGG-GT--------------------TCTTCSEEE
T ss_pred hhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccC-chH-Hc--------------------CCCcCCEEE
Confidence 6667777777777777765443 2334677777777776653 221 11 156888888
Q ss_pred eecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccc
Q 037651 358 LRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFS 437 (750)
Q Consensus 358 l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 437 (750)
+++|.++ .++. ...+++|++|++++|......+. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 117 l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 117 LNEDNIS-DISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp CTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred CcCCccc-Cchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 8888887 4444 44589999999999976655443 7889999999999999886543 889999999999999998
Q ss_pred eeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccc
Q 037651 438 GEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSEL 517 (750)
Q Consensus 438 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l 517 (750)
+. +. +..+++|+.+++++|.+++..+ +..+++|++|++++|+++ .++. +. .+++|++|++++|.+++. ..+
T Consensus 191 ~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~~--~~~ 261 (347)
T 4fmz_A 191 DI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP-LA-NLSQLTWLEIGTNQISDI--NAV 261 (347)
T ss_dssp CC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCC--GGG
T ss_pred cc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc-hh-cCCCCCEEECCCCccCCC--hhH
Confidence 43 33 7889999999999999985544 888999999999999998 4555 33 499999999999999853 468
Q ss_pred cCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCC
Q 037651 518 CKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGN 597 (750)
Q Consensus 518 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N 597 (750)
..+++|+.|++++|++++. | .+..+++|++|++++|
T Consensus 262 ~~l~~L~~L~l~~n~l~~~-~-------------------------------------------~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDI-S-------------------------------------------VLNNLSQLNSLFLNNN 297 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC-G-------------------------------------------GGGGCTTCSEEECCSS
T ss_pred hcCCCcCEEEccCCccCCC-h-------------------------------------------hhcCCCCCCEEECcCC
Confidence 8999999999999988742 2 3677889999999999
Q ss_pred cCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcce
Q 037651 598 QLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLS 648 (750)
Q Consensus 598 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 648 (750)
++++..|..++.+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999999999999999999999997666 888999999999999875
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=2.4e-30 Score=273.33 Aligned_cols=149 Identities=30% Similarity=0.419 Sum_probs=100.2
Q ss_pred CCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEE
Q 037651 375 TPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLV 454 (750)
Q Consensus 375 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 454 (750)
+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++ + ..+..+++|++|+
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLN 271 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEE
T ss_pred CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEE
Confidence 5556666666666554333 5556677777777777664433 6677777777777777764 2 3466777777777
Q ss_pred ccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCC
Q 037651 455 LSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLS 534 (750)
Q Consensus 455 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 534 (750)
+++|++++. ..+..+++|+.|++++|++.+..|..+.. +++|+.|++++|++++..| +..+++|+.|++++|.++
T Consensus 272 l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 272 VGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHT-CTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhc-cccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 777777743 34777788888888888877555555554 7888888888888875555 777888888888888764
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.2e-34 Score=313.38 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=55.4
Q ss_pred CCCCCEEecCCCcCcccCCcCCc-----CCCCCCeEECccCccccc----cCccccCCCCCCEEeCCCCccceeCCcccc
Q 037651 375 TPFLTDLDISFNSLNGSIPQSVG-----NLKQLLTLVISNNNLSGG----IPQFLKNISSLYILDMTKNNFSGEIPESIG 445 (750)
Q Consensus 375 ~~~L~~L~ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 445 (750)
+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.
T Consensus 283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence 44555555555554432221111 124566666666665543 344455556666666666665544333332
Q ss_pred C-----CCCCCEEEccCCcCcC----CCCccccCCCCCCEEecCCCccc
Q 037651 446 S-----LLTIRFLVLSNNHLSG----EIPPSLKNCSLMDSLDLGENQLS 485 (750)
Q Consensus 446 ~-----l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~ 485 (750)
. .++|++|++++|.+++ .+|..+..+++|++|++++|+++
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 1 3455555555555553 34444555555555555555554
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.6e-34 Score=312.67 Aligned_cols=386 Identities=20% Similarity=0.135 Sum_probs=218.3
Q ss_pred CCCCEEeCcCCCCcccCCcc-cCCCCCCCEEECcCCCCccc---ccccccCCCCCCCEEeCcCcccccccchhhhc-ccc
Q 037651 55 TNLLSLDLNSNDLQGDIPDG-FASLNSLQLLDLSGNSFLEG---QLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDG-LSE 129 (750)
Q Consensus 55 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~~~~~---~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~ 129 (750)
++|++|++++|+++...... +..+++|++|++++|.+... .++..+..+++|++|++++|.+.+..+..+.. ++.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45677777777776443332 66677777777777773211 34555666777777777777766544433322 220
Q ss_pred ccCCCCccEEEccCCcCcc----cCCccccCCCCCcEEEccCCcccccCCcccc-----CCCCCCeeecccccCCccc--
Q 037651 130 CINSSSLARLELGYNQLTG----NLPISLGYLKNLRYLELWYNSFLGSIPPSIG-----NLTFLEELYLTSNQMNGKF-- 198 (750)
Q Consensus 130 ~~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~~-- 198 (750)
..++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|++++..
T Consensus 83 --~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 83 --PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp --TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred --CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 00146666666666652 3355555666666666666655543222221 2344555555555555422
Q ss_pred --chhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEeccccCCCCCCh
Q 037651 199 --PESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPT 276 (750)
Q Consensus 199 --~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 276 (750)
+..+..+++|++|++++|.+.+.... . +..
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~-~-----------------------------------------------l~~ 192 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVR-V-----------------------------------------------LCQ 192 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHH-H-----------------------------------------------HHH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHH-H-----------------------------------------------HHH
Confidence 23333444455555544443321110 0 000
Q ss_pred hh-ccCCcccEEEcCCCCcCCCc----ChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCC
Q 037651 277 WL-RNQTELTTLVLNGASISDTL----PSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSS 351 (750)
Q Consensus 277 ~l-~~~~~L~~L~L~~n~i~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~ 351 (750)
.+ ...++|++|++++|.+++.. +..+. . ++
T Consensus 193 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~--------------------------------------------~~ 227 (461)
T 1z7x_W 193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-S--------------------------------------------KA 227 (461)
T ss_dssp HHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-H--------------------------------------------CT
T ss_pred HHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-h--------------------------------------------CC
Confidence 01 12345555555555555432 22221 1 23
Q ss_pred CCcEEEeecccccCC----CCcchhccCCCCCEEecCCCcCccc----CCcCCcCCCCCCeEECccCccccccCccccC-
Q 037651 352 NLTKLYLRDNLFSGP----IPNDLGQKTPFLTDLDISFNSLNGS----IPQSVGNLKQLLTLVISNNNLSGGIPQFLKN- 422 (750)
Q Consensus 352 ~L~~L~l~~n~l~~~----i~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~- 422 (750)
+|++|++++|.+++. +...+...+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+..
T Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 307 (461)
T 1z7x_W 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 307 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence 445555555544322 1122223467778888888777653 4555666788888888888876544333332
Q ss_pred ----CCCCCEEeCCCCcccee----CCccccCCCCCCEEEccCCcCcCCCCccccC-----CCCCCEEecCCCcccc---
Q 037651 423 ----ISSLYILDMTKNNFSGE----IPESIGSLLTIRFLVLSNNHLSGEIPPSLKN-----CSLMDSLDLGENQLSG--- 486 (750)
Q Consensus 423 ----l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~~~~--- 486 (750)
.++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|++++
T Consensus 308 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 387 (461)
T 1z7x_W 308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC 387 (461)
T ss_dssp HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhH
Confidence 25888888888888754 4555666788888888888887554444432 6688888888888875
Q ss_pred -cCChhhhhcCCCCCEEEccCccceeecCccc-----cCCCCCcEEEcccCcCCCc
Q 037651 487 -NIPAWIGESMPSLSILRLRSNHFNGTIPSEL-----CKLSALHILDLSHNNLSGP 536 (750)
Q Consensus 487 -~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~ 536 (750)
.+|..+.. +++|++|++++|++++.....+ ....+|+.|++.++.....
T Consensus 388 ~~l~~~l~~-~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 388 SSLAATLLA-NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp HHHHHHHHH-CCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred HHHHHHHHh-CCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 56666655 7888888888888765421111 1234677777777766543
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.2e-29 Score=260.86 Aligned_cols=249 Identities=22% Similarity=0.259 Sum_probs=200.1
Q ss_pred CCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEE
Q 037651 350 SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYIL 429 (750)
Q Consensus 350 ~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 429 (750)
.+.++.|++++|.++ .++...+..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..+. ++|++|
T Consensus 51 ~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L 126 (330)
T 1xku_A 51 PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQEL 126 (330)
T ss_dssp CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEE
T ss_pred CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEE
Confidence 467888888888888 444444455888999999999988888888888999999999999887 4454443 689999
Q ss_pred eCCCCccceeCCccccCCCCCCEEEccCCcCcC--CCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCc
Q 037651 430 DMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSG--EIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 507 (750)
Q Consensus 430 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n 507 (750)
++++|++++..+..+..+++|+.|++++|.++. ..+..+.++++|++|++++|++. .+|..+ .++|++|++++|
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n 202 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGN 202 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTS
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCC
Confidence 999999887777778888999999999998853 66778888999999999999987 677665 478999999999
Q ss_pred cceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccc
Q 037651 508 HFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLL 587 (750)
Q Consensus 508 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~ 587 (750)
++++..|..+..+++|+.|++++|++++..|. .+..++
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------------------------------------~~~~l~ 240 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNG------------------------------------------SLANTP 240 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSSCCCEECTT------------------------------------------TGGGST
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCceeChh------------------------------------------hccCCC
Confidence 99888788888999999999999988754332 456677
Q ss_pred cCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCC------CCCCeEECcCCccee
Q 037651 588 HLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSI------RFLSFLNLSFNNLSG 649 (750)
Q Consensus 588 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~l~ls~N~l~g 649 (750)
+|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..|... +.++.+++++|++..
T Consensus 241 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 8888888888888 778888888888888888888887666666433 678888888888753
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.7e-28 Score=256.88 Aligned_cols=246 Identities=23% Similarity=0.247 Sum_probs=188.4
Q ss_pred CcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEEC
Q 037651 7 SIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDL 86 (750)
Q Consensus 7 ~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 86 (750)
+++.++++++.++.+|... .+++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccC----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 7888999998888887522 268899999999998877778899999999999999998877888999999999999
Q ss_pred cCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcc--cCCccccCCCCCcEEE
Q 037651 87 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTG--NLPISLGYLKNLRYLE 164 (750)
Q Consensus 87 s~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~ 164 (750)
++|.+ . .+|..+. ++|++|++++|.+++..+..+..++ +|++|++++|.+.. ..+..+..+++|++|+
T Consensus 108 s~n~l-~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 108 SKNQL-K-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLN------QMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp CSSCC-S-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT------TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CCCcC-C-ccChhhc--ccccEEECCCCcccccCHhHhcCCc------cccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 99984 3 3555443 7899999999999888887788777 89999999998853 6677888899999999
Q ss_pred ccCCcccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCC
Q 037651 165 LWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNS 244 (750)
Q Consensus 165 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~ 244 (750)
+++|.+.. +|..+. ++|++|++++|++++..|..+.++++|+.|++++|.+++..+ ..+..+++|++|++++|...
T Consensus 178 l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 178 IADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp CCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCS
T ss_pred CCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCc
Confidence 99998874 555443 789999999999888778888888999999999998887443 36777788888888775442
Q ss_pred CceEeccCCCCCCCceeEEEeccccCCCCC
Q 037651 245 SLSFNISFDWIPPFKLRYLVIRYYQLGPKF 274 (750)
Q Consensus 245 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 274 (750)
.++..+..+++|++|++++|.+.+..
T Consensus 254 ----~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 254 ----KVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp ----SCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred ----cCChhhccCCCcCEEECCCCcCCccC
Confidence 22222333344444444444444333
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.6e-29 Score=261.40 Aligned_cols=247 Identities=24% Similarity=0.289 Sum_probs=167.3
Q ss_pred CCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEE
Q 037651 350 SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYIL 429 (750)
Q Consensus 350 ~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 429 (750)
.+.++.|++++|.+++ ++...+..+++|++|++++|++++..|..|.++++|++|++++|.+. .+|..+. ++|++|
T Consensus 53 ~~~l~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVEL 128 (332)
T ss_dssp CTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEE
T ss_pred CCCCeEEECCCCcCCc-cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEE
Confidence 3567777777777763 33333344777777777777777777777777777777777777776 3444333 677777
Q ss_pred eCCCCccceeCCccccCCCCCCEEEccCCcCc--CCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCc
Q 037651 430 DMTKNNFSGEIPESIGSLLTIRFLVLSNNHLS--GEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 507 (750)
Q Consensus 430 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n 507 (750)
++++|++++..+..+..+++|+.|++++|.++ +..+..+..+ +|+.|++++|+++ .+|..+ .++|++|++++|
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n 203 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHN 203 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSS
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCC
Confidence 77777777555556777777777777777775 3556666666 7777777777776 466654 357777777777
Q ss_pred cceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccc
Q 037651 508 HFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLL 587 (750)
Q Consensus 508 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~ 587 (750)
.+++..|..+..+++|+.|++++|++++..|. .+..++
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~------------------------------------------~~~~l~ 241 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENG------------------------------------------SLSFLP 241 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT------------------------------------------GGGGCT
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcCChh------------------------------------------HhhCCC
Confidence 77766667777777777777777777754333 345556
Q ss_pred cCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCC------CCCCeEECcCCcce
Q 037651 588 HLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSI------RFLSFLNLSFNNLS 648 (750)
Q Consensus 588 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~l~ls~N~l~ 648 (750)
+|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..+... ..|+.+++++|++.
T Consensus 242 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 6667777777766 566666667777777777777765555555432 45666777777665
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=8.2e-29 Score=259.50 Aligned_cols=267 Identities=24% Similarity=0.292 Sum_probs=132.6
Q ss_pred CcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEEC
Q 037651 7 SIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDL 86 (750)
Q Consensus 7 ~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 86 (750)
+++.++++++.++.+|.. + .++|++|++++|.+++..+..|.++++|++|++++|++++..|.+|+++++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~--~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKE--I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSC--C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCC--C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 455555555555554431 1 245555555555555444445555555555555555555555555555555555555
Q ss_pred cCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCc--ccCCccccCCCCCcEEE
Q 037651 87 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLT--GNLPISLGYLKNLRYLE 164 (750)
Q Consensus 87 s~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~ 164 (750)
++|.+ . .+|..+. ++|++|++++|.+++..+..+..++ +|++|++++|.++ +..+..+..+ +|++|+
T Consensus 110 ~~n~l-~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 110 SKNHL-V-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLR------NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp CSSCC-C-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCS------SCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred CCCcC-C-ccCcccc--ccCCEEECCCCccCccCHhHhCCCc------cCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence 55552 2 2333332 4555555555555544444444444 5555555555553 2344444444 555555
Q ss_pred ccCCcccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCC
Q 037651 165 LWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNS 244 (750)
Q Consensus 165 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~ 244 (750)
+++|++++ +|..+. ++|++|++++|.+++..+..+.++++|+.|++++|.+++..+ ..+..+++|++|++++
T Consensus 179 l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~---- 250 (332)
T 2ft3_A 179 ISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDN---- 250 (332)
T ss_dssp CCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCS----
T ss_pred CcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCC----
Confidence 55555543 333322 455555555555554444455555555555555555544222 2344444444444444
Q ss_pred CceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhh-----cCCCcEEEcCCCcC
Q 037651 245 SLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQL-----NLTLDELDVGGNHL 319 (750)
Q Consensus 245 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~-----~~~L~~L~l~~n~l 319 (750)
|.+. .+|.++..+++|++|++++|.+++..+..+... .+.++.+++++|.+
T Consensus 251 -----------------------N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 251 -----------------------NKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp -----------------------SCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred -----------------------CcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 3333 344555556666666666666554444333221 13344555555544
Q ss_pred C
Q 037651 320 S 320 (750)
Q Consensus 320 ~ 320 (750)
.
T Consensus 307 ~ 307 (332)
T 2ft3_A 307 P 307 (332)
T ss_dssp C
T ss_pred c
Confidence 3
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.4e-28 Score=254.79 Aligned_cols=250 Identities=24% Similarity=0.271 Sum_probs=203.3
Q ss_pred cEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccc--cCccccCCCCCCEEeC
Q 037651 354 TKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGG--IPQFLKNISSLYILDM 431 (750)
Q Consensus 354 ~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L 431 (750)
+.++.+++.++ .+|..+ .++|++|++++|+++...+..|.++++|++|++++|.+... .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 45666777766 666654 35788888888888865556678888888999988888733 3566777889999999
Q ss_pred CCCccceeCCccccCCCCCCEEEccCCcCcCCCC-ccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccce
Q 037651 432 TKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIP-PSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFN 510 (750)
Q Consensus 432 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~ 510 (750)
++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccc
Confidence 999888 567778888999999999999886554 5788899999999999998866665554 4899999999999998
Q ss_pred e-ecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccC
Q 037651 511 G-TIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHL 589 (750)
Q Consensus 511 ~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L 589 (750)
+ .+|..+..+++|++|++++|++++..|. .+..+++|
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------------------------------------~~~~l~~L 201 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPT------------------------------------------AFNSLSSL 201 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTT------------------------------------------TTTTCTTC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHH------------------------------------------HhcCCCCC
Confidence 6 6788899999999999999988865443 45667788
Q ss_pred CeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCC-CCCeEECcCCcceecC
Q 037651 590 GTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIR-FLSFLNLSFNNLSGEI 651 (750)
Q Consensus 590 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~l~ls~N~l~g~i 651 (750)
++|+|++|++++..+..+..+++|+.||+++|++++..|..+..++ +|++|++++|+++|..
T Consensus 202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 9999999999987777889999999999999999999998888884 8999999999998753
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.9e-31 Score=301.77 Aligned_cols=399 Identities=16% Similarity=0.118 Sum_probs=220.9
Q ss_pred CCCCCCEEeCcCcccccccchhhhcc-ccccCCCCccEEEccCCc-Ccc-cCCccccCCCCCcEEEccCCcccccC----
Q 037651 102 TLCNLQTLKLSLNQFRGEVSDFIDGL-SECINSSSLARLELGYNQ-LTG-NLPISLGYLKNLRYLELWYNSFLGSI---- 174 (750)
Q Consensus 102 ~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~~~~~~~L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~---- 174 (750)
.+++|++|++++|.+++..+..+... + .+|++|++++|. ++. .++.....+++|++|++++|.+++..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~-----~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l 184 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARA-----DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL 184 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHG-----GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhcc-----ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence 56677777777776665555555442 2 037777777665 111 12222346677777777777765442
Q ss_pred CccccCCCCCCeeecccccCC----cccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEec
Q 037651 175 PPSIGNLTFLEELYLTSNQMN----GKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNI 250 (750)
Q Consensus 175 p~~l~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 250 (750)
+.....+++|++|++++|.++ +.++..+.++++|+.|++++|.+.+ ++ ..+..+++|++|+++...........
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHH
Confidence 223345677777777777776 2334445567777777777777665 33 35677777777777642221111122
Q ss_pred cCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCC-cCCCcccc
Q 037651 251 SFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSG-RIPNTLVF 329 (750)
Q Consensus 251 ~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~ 329 (750)
...+..+.+|+.++++++. ...+|..+..+++|++|++++|.+++.....+...+++|++|+++ +.+.. .++....
T Consensus 263 ~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~- 339 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQ- 339 (592)
T ss_dssp SSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHH-
T ss_pred HHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHH-
Confidence 2334455677777776642 445677777778888888888876554443444555677777777 33221 1111100
Q ss_pred CCCceEECCCCCCCCCCCCCCCCCcEEEeec-----------ccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcC
Q 037651 330 RFPGSVDLSSNRFEGPLPLWSSNLTKLYLRD-----------NLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGN 398 (750)
Q Consensus 330 ~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~-----------n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 398 (750)
.+++|++|++++ +.+++.....+...+++|++|+++.|.+++..+..+..
T Consensus 340 -------------------~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 340 -------------------YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp -------------------HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred -------------------hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 034566666662 34433222233334666666666666665544444433
Q ss_pred -CCCCCeEECc----cCccccc-----cCccccCCCCCCEEeCCCCc--cceeCCcccc-CCCCCCEEEccCCcCcCC-C
Q 037651 399 -LKQLLTLVIS----NNNLSGG-----IPQFLKNISSLYILDMTKNN--FSGEIPESIG-SLLTIRFLVLSNNHLSGE-I 464 (750)
Q Consensus 399 -l~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~ 464 (750)
+++|++|+++ .|.+++. ++..+.++++|++|+++.|. +++..+..+. .+++|++|++++|++++. +
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 5666666664 3445432 23335556677777776433 4444333332 356677777777766542 3
Q ss_pred CccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccc-cCCCCCcEEEcc
Q 037651 465 PPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSEL-CKLSALHILDLS 529 (750)
Q Consensus 465 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls 529 (750)
+..+.++++|++|++++|++++.....+...+++|+.|++++|++++.....+ ..++.+....+.
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence 33445667777777777776544333333346777777777777654322222 244555444443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2e-29 Score=266.62 Aligned_cols=278 Identities=19% Similarity=0.188 Sum_probs=220.4
Q ss_pred ceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCcc
Q 037651 333 GSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNL 412 (750)
Q Consensus 333 ~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 412 (750)
...+.+++.++.......++|++|++++|.++ .++...+..+++|++|++++|++++..+..|.++++|++|++++|.+
T Consensus 34 ~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp SEEECCSTTCSSCCTTCCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eEeeCCCCCcccccccccccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 34555666655544444578999999999998 55554455699999999999999988888899999999999999999
Q ss_pred ccccCccccCCCCCCEEeCCCCccceeCC-ccccCCCCCCEEEccCC-cCcCCCCccccCCCCCCEEecCCCcccccCCh
Q 037651 413 SGGIPQFLKNISSLYILDMTKNNFSGEIP-ESIGSLLTIRFLVLSNN-HLSGEIPPSLKNCSLMDSLDLGENQLSGNIPA 490 (750)
Q Consensus 413 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~ 490 (750)
++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++| .+++..+..|.++++|++|++++|++.+..|.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 87666668999999999999999984333 37888999999999998 46766677899999999999999999877677
Q ss_pred hhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceE
Q 037651 491 WIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQY 570 (750)
Q Consensus 491 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 570 (750)
.+.. +++|++|++++|++....+..+..+++|+.|++++|++++..+..+..
T Consensus 193 ~l~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------------- 244 (353)
T 2z80_A 193 SLKS-IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST--------------------------- 244 (353)
T ss_dssp TTTT-CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------------
T ss_pred HHhc-cccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc---------------------------
Confidence 7765 899999999999987433334556899999999999998754433211
Q ss_pred eecccccccchhhhccccCCeEeccCCcCCC----CcccccCCCccCcEEEccCCccCcCCCcc-ccCCCCCCeEECcCC
Q 037651 571 VYQQTLYLMPVELTSLLHLGTLNLSGNQLVG----KIPTQIGKLEWLESLDLSRNKLSGSIPPS-MVSIRFLSFLNLSFN 645 (750)
Q Consensus 571 ~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~l~ls~N 645 (750)
......++.++|+++.+++ .+|+.++.+++|+.||+++|+++ .+|.. +..+++|++|++++|
T Consensus 245 ------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 245 ------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp --------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred ------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence 2234567778888887775 47888999999999999999999 46665 589999999999999
Q ss_pred cceecCC
Q 037651 646 NLSGEIP 652 (750)
Q Consensus 646 ~l~g~ip 652 (750)
++.|.+|
T Consensus 312 ~~~~~~~ 318 (353)
T 2z80_A 312 PWDCSCP 318 (353)
T ss_dssp CBCCCHH
T ss_pred CccCcCC
Confidence 9998765
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5.8e-31 Score=299.32 Aligned_cols=159 Identities=11% Similarity=0.026 Sum_probs=106.8
Q ss_pred CCCCcEEEeecccccCCCCcchhccCCCCCEEecC----CCcCccc-----CCcCCcCCCCCCeEECccCc--cccccCc
Q 037651 350 SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDIS----FNSLNGS-----IPQSVGNLKQLLTLVISNNN--LSGGIPQ 418 (750)
Q Consensus 350 ~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~~ 418 (750)
+++|++|+++.|.+++..+..+...+++|++|+++ .|.+++. ++..+.++++|++|++++|. +++..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 35666666666666655555555557777777775 4445432 22234557888888887543 5544444
Q ss_pred ccc-CCCCCCEEeCCCCccce-eCCccccCCCCCCEEEccCCcCcCC-CCccccCCCCCCEEecCCCcccccCChhhhhc
Q 037651 419 FLK-NISSLYILDMTKNNFSG-EIPESIGSLLTIRFLVLSNNHLSGE-IPPSLKNCSLMDSLDLGENQLSGNIPAWIGES 495 (750)
Q Consensus 419 ~l~-~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~ 495 (750)
.+. .+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|++++.....+...
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~ 536 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMA 536 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGC
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHh
Confidence 443 47889999999998876 3344557788999999999988644 34445678899999999999886555556556
Q ss_pred CCCCCEEEccCcc
Q 037651 496 MPSLSILRLRSNH 508 (750)
Q Consensus 496 l~~L~~L~Ls~n~ 508 (750)
++.+....+..++
T Consensus 537 ~p~l~~~~~~~~~ 549 (592)
T 3ogk_B 537 RPYWNIELIPSRR 549 (592)
T ss_dssp CTTEEEEEECCC-
T ss_pred CCCcEEEEecCcc
Confidence 7888777776553
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.4e-28 Score=254.70 Aligned_cols=275 Identities=21% Similarity=0.239 Sum_probs=227.0
Q ss_pred eEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCccc--CCcCCcCCCCCCeEECccCc
Q 037651 334 SVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGS--IPQSVGNLKQLLTLVISNNN 411 (750)
Q Consensus 334 ~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~ 411 (750)
.++.+++.++.......+++++|++++|.++ .+|...+..+++|++|++++|.+... .+..+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 3444444444433334578999999999998 78887777799999999999998843 35666778999999999999
Q ss_pred cccccCccccCCCCCCEEeCCCCccceeCC-ccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccc-cCC
Q 037651 412 LSGGIPQFLKNISSLYILDMTKNNFSGEIP-ESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG-NIP 489 (750)
Q Consensus 412 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p 489 (750)
+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+|
T Consensus 90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred cc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 98 467779999999999999999996554 578899999999999999998889999999999999999999986 467
Q ss_pred hhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecce
Q 037651 490 AWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQ 569 (750)
Q Consensus 490 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 569 (750)
..+.. +++|++|++++|++++..|..+..+++|+.|++++|++++..+.
T Consensus 169 ~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------------ 217 (306)
T 2z66_A 169 DIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF------------------------------ 217 (306)
T ss_dssp SCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG------------------------------
T ss_pred hHHhh-CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh------------------------------
Confidence 66654 99999999999999988899999999999999999999864332
Q ss_pred EeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCc-cCcEEEccCCccCcCCCc--cccCCCCCCeEECcCCc
Q 037651 570 YVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLE-WLESLDLSRNKLSGSIPP--SMVSIRFLSFLNLSFNN 646 (750)
Q Consensus 570 ~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~l~ls~N~ 646 (750)
.+..+++|+.|+|++|++++..|..+..++ +|+.|++++|++++..+. ....+...+.+.+..++
T Consensus 218 ------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~ 285 (306)
T 2z66_A 218 ------------PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 285 (306)
T ss_dssp ------------GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGG
T ss_pred ------------hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccc
Confidence 466788999999999999999999999985 999999999999875331 11223445556677788
Q ss_pred ceecCCC
Q 037651 647 LSGEIPT 653 (750)
Q Consensus 647 l~g~ip~ 653 (750)
+.|..|.
T Consensus 286 ~~C~~p~ 292 (306)
T 2z66_A 286 MECATPS 292 (306)
T ss_dssp CBEEESG
T ss_pred cccCCch
Confidence 8887765
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=6.1e-28 Score=263.13 Aligned_cols=251 Identities=22% Similarity=0.236 Sum_probs=203.4
Q ss_pred CCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeC
Q 037651 352 NLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDM 431 (750)
Q Consensus 352 ~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 431 (750)
....++.++..++ .+|..+ .++++.|++++|++.+..+..|.++++|++|++++|.+.+..+..|.++++|++|+|
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 3456777777776 677665 357888888888888777788888888888888888888777788888888888888
Q ss_pred CCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCcccee
Q 037651 432 TKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG 511 (750)
Q Consensus 432 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~ 511 (750)
++|++++..+..|..+++|++|++++|+++...+..|.++++|+.|++++|...+.++...+.++++|+.|++++|+++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 8888886666678888888888888888887777788888888888888865555777766666888999999998887
Q ss_pred ecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCe
Q 037651 512 TIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGT 591 (750)
Q Consensus 512 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~ 591 (750)
.+| .+..+++|+.|+|++|++++..|. .|.++++|+.
T Consensus 199 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~------------------------------------------~~~~l~~L~~ 235 (440)
T 3zyj_A 199 EIP-NLTPLIKLDELDLSGNHLSAIRPG------------------------------------------SFQGLMHLQK 235 (440)
T ss_dssp SCC-CCTTCSSCCEEECTTSCCCEECTT------------------------------------------TTTTCTTCCE
T ss_pred ccc-ccCCCcccCEEECCCCccCccChh------------------------------------------hhccCccCCE
Confidence 555 478888899999999988765443 4666778888
Q ss_pred EeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceec
Q 037651 592 LNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGE 650 (750)
Q Consensus 592 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ 650 (750)
|+|++|++++..|..|..+++|+.|||++|++++..+..+..+++|+.|++++|++.|.
T Consensus 236 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp EECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred EECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 99999999888888888999999999999999887777788889999999999988764
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=7.5e-28 Score=263.38 Aligned_cols=250 Identities=21% Similarity=0.216 Sum_probs=200.5
Q ss_pred CcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCC
Q 037651 353 LTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMT 432 (750)
Q Consensus 353 L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 432 (750)
...++.++..++ .+|..+ .+++++|++++|++++..+..|.++++|++|++++|.+.+..+..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456666666666 667654 3578888888888888778888888888888888888887777888888888888888
Q ss_pred CCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceee
Q 037651 433 KNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT 512 (750)
Q Consensus 433 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~ 512 (750)
+|++++..+..|..+++|++|++++|+++...+..|.++++|+.|++++|...+.++...+..+++|+.|++++|++++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 8888866666678888888888888888866667788888888888888655557777666668888888888888874
Q ss_pred cCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeE
Q 037651 513 IPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTL 592 (750)
Q Consensus 513 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L 592 (750)
+| .+..+++|+.|+|++|++++..| ..|.++++|+.|
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~------------------------------------------~~~~~l~~L~~L 247 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRP------------------------------------------GSFHGLSSLKKL 247 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECG------------------------------------------GGGTTCTTCCEE
T ss_pred cc-cccccccccEEECcCCcCcccCc------------------------------------------ccccCccCCCEE
Confidence 44 47788889999999988875434 356677788889
Q ss_pred eccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceec
Q 037651 593 NLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGE 650 (750)
Q Consensus 593 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ 650 (750)
+|++|++++..|..|..+++|+.|||++|++++..+..+..+++|+.|++++|++.|.
T Consensus 248 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred EeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 9999998888888888889999999999999877777788888999999999988765
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.7e-28 Score=254.18 Aligned_cols=225 Identities=22% Similarity=0.288 Sum_probs=153.1
Q ss_pred CCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEc
Q 037651 376 PFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVL 455 (750)
Q Consensus 376 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 455 (750)
+.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|+++ .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34444444444444 33333444555555555555554 44444555555555555555555 44555555555555555
Q ss_pred cCCcCcCCCCccc---------cCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEE
Q 037651 456 SNNHLSGEIPPSL---------KNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHIL 526 (750)
Q Consensus 456 ~~n~l~~~~~~~~---------~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 526 (750)
++|.+.+.+|..+ .++++|++|++++|+++ .+|..+.. +++|++|++++|+++ .+|..+..+++|++|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL 234 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-CTTCCEEEEESSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-CCCCCEEEccCCCCC-cCchhhccCCCCCEE
Confidence 5555544555443 34788888888888887 77877665 888888888888888 466678888888888
Q ss_pred EcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccc
Q 037651 527 DLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQ 606 (750)
Q Consensus 527 ~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 606 (750)
++++|++.+.+|. .++.+++|++|+|++|.+.+.+|..
T Consensus 235 ~Ls~n~~~~~~p~------------------------------------------~~~~l~~L~~L~L~~n~~~~~~p~~ 272 (328)
T 4fcg_A 235 DLRGCTALRNYPP------------------------------------------IFGGRAPLKRLILKDCSNLLTLPLD 272 (328)
T ss_dssp ECTTCTTCCBCCC------------------------------------------CTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred ECcCCcchhhhHH------------------------------------------HhcCCCCCCEEECCCCCchhhcchh
Confidence 8888888776654 3556677788888888888888888
Q ss_pred cCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcce
Q 037651 607 IGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLS 648 (750)
Q Consensus 607 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 648 (750)
++++++|+.|+|++|++.+.+|..+.++++|+.++++.|.+.
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 888888888888888888888888888888888888876544
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.1e-27 Score=249.66 Aligned_cols=227 Identities=22% Similarity=0.291 Sum_probs=208.1
Q ss_pred CCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEE
Q 037651 350 SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYIL 429 (750)
Q Consensus 350 ~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 429 (750)
.+.++.|++++|.++ .+|..++. +++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 368999999999998 88988877 999999999999999 88889999999999999999999 779899999999999
Q ss_pred eCCCCccceeCCccccC---------CCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCC
Q 037651 430 DMTKNNFSGEIPESIGS---------LLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLS 500 (750)
Q Consensus 430 ~Ls~n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~ 500 (750)
++++|.+.+.+|..+.. +++|++|++++|+++ .+|..+..+++|++|++++|++. .+|..+.. +++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~-l~~L~ 232 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH-LPKLE 232 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG-CTTCC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc-CCCCC
Confidence 99999988889887654 999999999999999 88999999999999999999999 58877665 99999
Q ss_pred EEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccc
Q 037651 501 ILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMP 580 (750)
Q Consensus 501 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 580 (750)
+|++++|++.+.+|..+..+++|+.|++++|++.+.+|.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~----------------------------------------- 271 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL----------------------------------------- 271 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT-----------------------------------------
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch-----------------------------------------
Confidence 999999999999999999999999999999999887665
Q ss_pred hhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCc
Q 037651 581 VELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSG 625 (750)
Q Consensus 581 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 625 (750)
.++.+++|++|+|++|.+.+.+|+.++++++|+.+++..+.+..
T Consensus 272 -~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 272 -DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp -TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred -hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 46678889999999999999999999999999999999887653
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.3e-27 Score=244.55 Aligned_cols=252 Identities=19% Similarity=0.174 Sum_probs=174.2
Q ss_pred cEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCC
Q 037651 354 TKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTK 433 (750)
Q Consensus 354 ~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 433 (750)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45666666665 566543 45677777777777776666777777788888887777776677777777788888877
Q ss_pred Cc-cceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceee
Q 037651 434 NN-FSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGT 512 (750)
Q Consensus 434 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~ 512 (750)
|. +....|..+..+++|++|++++|++++..|..+.++++|++|++++|++. .++...+..+++|++|++++|++++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCccccc
Confidence 76 66555667777777888888887777666777777777888888887777 44444333477777777777777755
Q ss_pred cCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeE
Q 037651 513 IPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTL 592 (750)
Q Consensus 513 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L 592 (750)
.+..+..+++|+.|++++|++++..|. .+..+++|+.|
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------------------------------~~~~l~~L~~L 206 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPH------------------------------------------AFRDLGRLMTL 206 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTT------------------------------------------TTTTCTTCCEE
T ss_pred CHHHhcCccccCEEECCCCcccccCHh------------------------------------------HccCcccccEe
Confidence 555677777777777777777654443 35556667777
Q ss_pred eccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceecCCC
Q 037651 593 NLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGEIPT 653 (750)
Q Consensus 593 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~ 653 (750)
++++|++++..|..+..+++|+.|++++|++....+.. .-...++.+..+.+.+.|..|.
T Consensus 207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred eCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence 77777777666666777777777777777776544321 1112344445666777777664
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.2e-27 Score=242.89 Aligned_cols=255 Identities=22% Similarity=0.238 Sum_probs=213.1
Q ss_pred eEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCc-c
Q 037651 334 SVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNN-L 412 (750)
Q Consensus 334 ~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 412 (750)
.++.+++.+........+++++|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|++|++++|. +
T Consensus 15 ~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp EEECCSSCCSSCCTTCCTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred EEEcCcCCcccCCcCCCCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 4455555554433334578999999999998 4555555569999999999999999889999999999999999997 8
Q ss_pred ccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhh
Q 037651 413 SGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWI 492 (750)
Q Consensus 413 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 492 (750)
.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|+++ .+|...
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~ 172 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERA 172 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHH
Confidence 7777889999999999999999999888888999999999999999999777778999999999999999998 566554
Q ss_pred hhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEee
Q 037651 493 GESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVY 572 (750)
Q Consensus 493 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (750)
+..+++|+.|++++|++.+..|..+..+++|+.|++++|++++..|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------------------- 218 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT---------------------------------- 218 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH----------------------------------
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH----------------------------------
Confidence 4459999999999999998889999999999999999999985322
Q ss_pred cccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccC
Q 037651 573 QQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVS 633 (750)
Q Consensus 573 ~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 633 (750)
..+..+++|+.|++++|.+....+.. .-...++.++.+.+.+....|..+..
T Consensus 219 --------~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 219 --------EALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp --------HHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred --------HHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence 34777889999999999998654432 22345677778889999889988754
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.5e-27 Score=250.53 Aligned_cols=282 Identities=22% Similarity=0.189 Sum_probs=160.4
Q ss_pred CCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEE
Q 037651 6 PSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLD 85 (750)
Q Consensus 6 ~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 85 (750)
+.....++++++++.+|.. + .++|++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|+
T Consensus 31 ~~~~~c~~~~~~l~~iP~~--~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSG--L--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp CTTSEEECCSTTCSSCCTT--C--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCeEeeCCCCCccccccc--c--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 3344456666666665541 1 14566666666666655444566666666666666666655555666666666666
Q ss_pred CcCCCCcccccccccCCCCCCCEEeCcCcccccccc-hhhhccccccCCCCccEEEccCC-cCcccCCccccCCCCCcEE
Q 037651 86 LSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVS-DFIDGLSECINSSSLARLELGYN-QLTGNLPISLGYLKNLRYL 163 (750)
Q Consensus 86 Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L 163 (750)
+++|+ ++...+..++++++|++|++++|++++..+ ..+..++ +|++|++++| .+....+..+.++++|++|
T Consensus 107 Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~------~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 107 LSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT------KLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CCSSC-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT------TCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCCc-CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC------CCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 66666 333333335666666666666666654333 3444444 5666666665 3444444555666666666
Q ss_pred EccCCcccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCC
Q 037651 164 ELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSN 243 (750)
Q Consensus 164 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~ 243 (750)
++++|.+.+..|..+.++++|++|++++|+++...+..+..+++|+.|++++|.+++..+. .+.
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~--------------- 243 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS-ELS--------------- 243 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc-ccc---------------
Confidence 6666666655555566666666666666665432222233455666666666655542211 110
Q ss_pred CCceEeccCCCCCCCceeEEEeccccCCC----CCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcC
Q 037651 244 SSLSFNISFDWIPPFKLRYLVIRYYQLGP----KFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHL 319 (750)
Q Consensus 244 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l 319 (750)
.......++.++++++.+.+ .+|.++..+++|++|++++|.++ .+|..++..+++|++|++++|.+
T Consensus 244 ---------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 244 ---------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp ------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ---------cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCc
Confidence 11122345555555555544 35777888888888888888887 45555444457788888888887
Q ss_pred CCcCC
Q 037651 320 SGRIP 324 (750)
Q Consensus 320 ~~~~~ 324 (750)
.+..|
T Consensus 314 ~~~~~ 318 (353)
T 2z80_A 314 DCSCP 318 (353)
T ss_dssp CCCHH
T ss_pred cCcCC
Confidence 76544
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1e-28 Score=256.11 Aligned_cols=248 Identities=22% Similarity=0.253 Sum_probs=190.5
Q ss_pred CCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCc-ccCCcCCc-------CCCCCCeEECccCccccccCccc--
Q 037651 351 SNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLN-GSIPQSVG-------NLKQLLTLVISNNNLSGGIPQFL-- 420 (750)
Q Consensus 351 ~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~l-- 420 (750)
++|+.+++++|.+ .+|..+... |+.|++++|.+. ..+|..+. ++++|++|++++|.+++.+|..+
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 4577777777777 677766552 777788888774 34454443 57888888888888888777765
Q ss_pred cCCCCCCEEeCCCCccceeCCccccCC-----CCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccC--Chhh-
Q 037651 421 KNISSLYILDMTKNNFSGEIPESIGSL-----LTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNI--PAWI- 492 (750)
Q Consensus 421 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--p~~~- 492 (750)
..+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..|.++++|++|++++|++.+.+ |..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 7888888888888888865 7777666 88999999999988777788888899999999999876542 3333
Q ss_pred hhcCCCCCEEEccCcccee--ecC-ccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecce
Q 037651 493 GESMPSLSILRLRSNHFNG--TIP-SELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQ 569 (750)
Q Consensus 493 ~~~l~~L~~L~Ls~n~l~~--~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 569 (750)
+..+++|++|++++|++++ .++ ..+..+++|++|++++|++++.+|..
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----------------------------- 247 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP----------------------------- 247 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS-----------------------------
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh-----------------------------
Confidence 2348899999999998873 222 33457889999999999988765421
Q ss_pred EeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCccee
Q 037651 570 YVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSG 649 (750)
Q Consensus 570 ~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g 649 (750)
.+..+++|++|+|++|+++ .+|..+. ++|+.||+++|++++. |. +..+++|++|++++|++++
T Consensus 248 ------------~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 248 ------------SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ------------CCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ------------hhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 2345678899999999998 7787776 8899999999999875 66 8889999999999998876
Q ss_pred c
Q 037651 650 E 650 (750)
Q Consensus 650 ~ 650 (750)
.
T Consensus 311 ~ 311 (312)
T 1wwl_A 311 S 311 (312)
T ss_dssp C
T ss_pred C
Confidence 3
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.5e-26 Score=250.13 Aligned_cols=247 Identities=20% Similarity=0.165 Sum_probs=209.8
Q ss_pred ceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCcc
Q 037651 333 GSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNL 412 (750)
Q Consensus 333 ~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 412 (750)
..++.++..+........+++++|++++|.+++..+..+ ..+++|++|++++|.+.+..+..|.++++|++|++++|.+
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHc-CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 345555555544333345789999999999985545544 4599999999999999999899999999999999999999
Q ss_pred ccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCC-cCcCCCCccccCCCCCCEEecCCCcccccCChh
Q 037651 413 SGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNN-HLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAW 491 (750)
Q Consensus 413 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~ 491 (750)
++..+..|..+++|++|++++|++....+..|..+++|+.|++++| .+....+..|.++++|+.|++++|+++ .+|.
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~- 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN- 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC-
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc-
Confidence 9887888999999999999999999777778999999999999995 455444457999999999999999998 5665
Q ss_pred hhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEe
Q 037651 492 IGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYV 571 (750)
Q Consensus 492 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 571 (750)
+. .+++|+.|++++|++++..|..+..+++|+.|++++|++++..|.
T Consensus 214 ~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------------------------- 260 (452)
T 3zyi_A 214 LT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN-------------------------------- 260 (452)
T ss_dssp CT-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT--------------------------------
T ss_pred cc-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH--------------------------------
Confidence 33 489999999999999988899999999999999999999865443
Q ss_pred ecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCc
Q 037651 572 YQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSG 625 (750)
Q Consensus 572 ~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 625 (750)
.|.++++|+.|+|++|++++..+..+..+++|+.|+|++|++..
T Consensus 261 ----------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 261 ----------AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp ----------TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ----------HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 46678889999999999998888889999999999999998763
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.7e-26 Score=248.98 Aligned_cols=246 Identities=21% Similarity=0.159 Sum_probs=209.8
Q ss_pred ceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCcc
Q 037651 333 GSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNL 412 (750)
Q Consensus 333 ~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 412 (750)
..++.++..+........++++.|++++|.+++ ++...+..+++|++|++++|.+.+..+..|.++++|++|++++|++
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 345555555554444445789999999999984 4444455699999999999999988889999999999999999999
Q ss_pred ccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCc-CcCCCCccccCCCCCCEEecCCCcccccCChh
Q 037651 413 SGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNH-LSGEIPPSLKNCSLMDSLDLGENQLSGNIPAW 491 (750)
Q Consensus 413 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~ 491 (750)
++..+..|..+++|++|++++|++....+..|..+++|+.|++++|. +....+..|.++++|++|++++|+++ .+|.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~- 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN- 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-
Confidence 97777789999999999999999997777789999999999999954 44444557999999999999999998 7775
Q ss_pred hhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEe
Q 037651 492 IGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYV 571 (750)
Q Consensus 492 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 571 (750)
+. .+++|+.|++++|++++..|..+..+++|+.|++++|++++..|.
T Consensus 203 ~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------------------------- 249 (440)
T 3zyj_A 203 LT-PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN-------------------------------- 249 (440)
T ss_dssp CT-TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT--------------------------------
T ss_pred cC-CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh--------------------------------
Confidence 33 489999999999999988899999999999999999999865443
Q ss_pred ecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccC
Q 037651 572 YQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLS 624 (750)
Q Consensus 572 ~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 624 (750)
.|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 250 ----------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 250 ----------AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ----------SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ----------hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 4667888999999999999888888999999999999999985
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.2e-25 Score=251.69 Aligned_cols=260 Identities=28% Similarity=0.362 Sum_probs=155.2
Q ss_pred CcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcC
Q 037651 309 LDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSL 388 (750)
Q Consensus 309 L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l 388 (750)
++.|++++|.++ .+|..+. +.++.|++++|.+.. +|..+++|++|++++|.++ .+|. .+++|++|++++|++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPL 113 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCC
T ss_pred CcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcC
Confidence 444444444444 3333222 344445555554442 2224566777777777666 4554 356677777777766
Q ss_pred cccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccc
Q 037651 389 NGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSL 468 (750)
Q Consensus 389 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 468 (750)
++. |. .+++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|.+++ +|
T Consensus 114 ~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~--- 177 (622)
T 3g06_A 114 THL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP--- 177 (622)
T ss_dssp CCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---
T ss_pred CCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---
Confidence 643 22 35667777777777664 3332 3667777777777663 333 23567777777777763 44
Q ss_pred cCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCc
Q 037651 469 KNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMK 548 (750)
Q Consensus 469 ~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~ 548 (750)
..+++|+.|++++|+++ .+|.. +++|+.|++++|.++ .+|.. +++|+.|++++|++++ +|.
T Consensus 178 ~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp~--------- 238 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPV--------- 238 (622)
T ss_dssp CCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCC---------
T ss_pred ccCCCCcEEECCCCCCC-CCCCc----cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CCC---------
Confidence 34566777777777776 45542 466777777777776 44432 3667777777776664 331
Q ss_pred cCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCC
Q 037651 549 VKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIP 628 (750)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 628 (750)
.+++|+.|+|++|+++ .+|. .+++|+.|+|++|+++ .+|
T Consensus 239 ------------------------------------~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp 277 (622)
T 3g06_A 239 ------------------------------------LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLP 277 (622)
T ss_dssp ------------------------------------CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCC
T ss_pred ------------------------------------CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCC
Confidence 2345667777777776 4554 4566777777777776 566
Q ss_pred ccccCCCCCCeEECcCCcceecCC
Q 037651 629 PSMVSIRFLSFLNLSFNNLSGEIP 652 (750)
Q Consensus 629 ~~l~~l~~L~~l~ls~N~l~g~ip 652 (750)
..+..+++|+.|++++|+++|.+|
T Consensus 278 ~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 278 ESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp GGGGGSCTTCEEECCSCCCCHHHH
T ss_pred HHHhhccccCEEEecCCCCCCcCH
Confidence 667777777777777777766654
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=4.5e-28 Score=251.81 Aligned_cols=249 Identities=24% Similarity=0.177 Sum_probs=200.2
Q ss_pred CCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEE
Q 037651 350 SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYIL 429 (750)
Q Consensus 350 ~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 429 (750)
+++|++|++++|.+++ ++...+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|
T Consensus 33 ~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred CCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence 4578888998888884 444344558999999999999887665 788899999999999887532 34889999
Q ss_pred eCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccc
Q 037651 430 DMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHF 509 (750)
Q Consensus 430 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l 509 (750)
++++|++++..+.. +++|+.|++++|++++..+..+..+++|++|++++|++.+..+..+...+++|++|++++|++
T Consensus 105 ~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 99999998655443 578999999999999877778888999999999999998666666655588999999999999
Q ss_pred eeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccC
Q 037651 510 NGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHL 589 (750)
Q Consensus 510 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L 589 (750)
++. | ....+++|++|++++|++++ +|..+..+++|
T Consensus 182 ~~~-~-~~~~l~~L~~L~Ls~N~l~~-------------------------------------------l~~~~~~l~~L 216 (317)
T 3o53_A 182 YDV-K-GQVVFAKLKTLDLSSNKLAF-------------------------------------------MGPEFQSAAGV 216 (317)
T ss_dssp CEE-E-CCCCCTTCCEEECCSSCCCE-------------------------------------------ECGGGGGGTTC
T ss_pred ccc-c-cccccccCCEEECCCCcCCc-------------------------------------------chhhhcccCcc
Confidence 855 3 33458899999999998874 23346678889
Q ss_pred CeEeccCCcCCCCcccccCCCccCcEEEccCCccC-cCCCccccCCCCCCeEECcC-CcceecCCCCC
Q 037651 590 GTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLS-GSIPPSMVSIRFLSFLNLSF-NNLSGEIPTAN 655 (750)
Q Consensus 590 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~l~ls~-N~l~g~ip~~~ 655 (750)
+.|+|++|+++ .+|..+..+++|+.|++++|++. +.+|..+..++.|+.+++++ +.+.|..|..+
T Consensus 217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc
Confidence 99999999998 57888899999999999999998 77888888889999999884 46777766543
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=9.8e-28 Score=248.62 Aligned_cols=225 Identities=21% Similarity=0.244 Sum_probs=176.3
Q ss_pred CcEEEeeccccc-CCCCcchh------ccCCCCCEEecCCCcCcccCCcCC--cCCCCCCeEECccCccccccCccccCC
Q 037651 353 LTKLYLRDNLFS-GPIPNDLG------QKTPFLTDLDISFNSLNGSIPQSV--GNLKQLLTLVISNNNLSGGIPQFLKNI 423 (750)
Q Consensus 353 L~~L~l~~n~l~-~~i~~~~~------~~~~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~l~~l 423 (750)
++.|++++|.++ +.+|.... ..+++|++|++++|++++..|..+ ..+++|++|++++|.+++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 455555555552 23444332 136778888888888877777665 7788888888888888876 7777766
Q ss_pred -----CCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCC--CCccc--cCCCCCCEEecCCCcccc--cCChhh
Q 037651 424 -----SSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGE--IPPSL--KNCSLMDSLDLGENQLSG--NIPAWI 492 (750)
Q Consensus 424 -----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~n~~~~--~~p~~~ 492 (750)
++|++|++++|++.+..|..+..+++|++|++++|++.+. .+..+ ..+++|++|++++|++++ .++..+
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 8899999999999877778888899999999999988754 23344 788999999999999983 345555
Q ss_pred hhcCCCCCEEEccCccceeecC-ccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEe
Q 037651 493 GESMPSLSILRLRSNHFNGTIP-SELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYV 571 (750)
Q Consensus 493 ~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 571 (750)
+..+++|++|++++|++++.+| ..+..+++|++|++++|+++ .+|..
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~------------------------------- 271 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG------------------------------- 271 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS-------------------------------
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh-------------------------------
Confidence 5568999999999999998775 45667899999999999998 66643
Q ss_pred ecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCc
Q 037651 572 YQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSG 625 (750)
Q Consensus 572 ~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 625 (750)
+. ++|++|||++|++++. |. +..+++|+.|++++|++++
T Consensus 272 -----------~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 -----------LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -----------CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -----------cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 22 6789999999999966 76 9999999999999999986
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=4.5e-29 Score=283.94 Aligned_cols=428 Identities=16% Similarity=0.129 Sum_probs=220.4
Q ss_pred CCCCCCCcEEECCCCCCCC---Cc------------cccccCCCCCCEEeCcCCCCcccCCcccC-CCCCCCEEECcCCC
Q 037651 27 SLNFTSLQVLDLSNNGFNS---TI------------PHWLFNITNLLSLDLNSNDLQGDIPDGFA-SLNSLQLLDLSGNS 90 (750)
Q Consensus 27 ~~~l~~L~~L~Ls~n~i~~---~~------------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~ 90 (750)
+..+++|++|+++++.... .. +.....+++|++|+|++|.+++..+..+. .+++|++|++++|.
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 4455667777776654211 11 11234567888888888877766555554 57788888888773
Q ss_pred Cccc-ccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCc--Ccc-cCCccccCCCCCcEEEcc
Q 037651 91 FLEG-QLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQ--LTG-NLPISLGYLKNLRYLELW 166 (750)
Q Consensus 91 ~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~--l~~-~~~~~l~~l~~L~~L~L~ 166 (750)
.++. .++..+..+++|++|++++|.+++..+..+..+. ..+++|++|++++|. +.. .++..+..+++|++|+++
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP--DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC--TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh--hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 2322 2344445778888888888877766555554332 133478888888776 221 112223456788888888
Q ss_pred CCcccccCCccccCCCCCCeeeccccc-------CCcccchhccCCCCCCEE-EcccCcCccccChhhhcCCCCCCEEec
Q 037651 167 YNSFLGSIPPSIGNLTFLEELYLTSNQ-------MNGKFPESFGQLSAIRVL-ELSDNQWEGFITEAHLRNLTSLEELSL 238 (750)
Q Consensus 167 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~-------l~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~~l~~l~~L~~L~l 238 (750)
+|...+.++..+.++++|++|+++.+. +.+ ++..+.++++|+.| .+.+... +.++. .+..+++|++|++
T Consensus 220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~-~~~~~~~L~~L~L 296 (594)
T 2p1m_B 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPA-VYSVCSRLTTLNL 296 (594)
T ss_dssp TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGG-GHHHHTTCCEEEC
T ss_pred CCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHH-HHHhhCCCCEEEc
Confidence 873333466667778888888755443 332 34467778888887 3433222 22222 3445677777777
Q ss_pred ccCCCCCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCc
Q 037651 239 IKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNH 318 (750)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~ 318 (750)
++|.. ... .++..+..+++|++|++++| +.+.....+...+++|++|+++++.
T Consensus 297 ~~~~l---~~~-----------------------~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~ 349 (594)
T 2p1m_B 297 SYATV---QSY-----------------------DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSE 349 (594)
T ss_dssp TTCCC---CHH-----------------------HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSC
T ss_pred cCCCC---CHH-----------------------HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCc
Confidence 77432 100 01222345566666666655 3322223333344566666664322
Q ss_pred ---------CCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecC--C--
Q 037651 319 ---------LSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDIS--F-- 385 (750)
Q Consensus 319 ---------l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls--~-- 385 (750)
+++.....+ ...+++|+.|.+..|.+++.....+...+++|+.|+++ +
T Consensus 350 ~~g~~~~~~l~~~~l~~l-------------------~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~ 410 (594)
T 2p1m_B 350 PFVMEPNVALTEQGLVSV-------------------SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK 410 (594)
T ss_dssp TTCSSCSSCCCHHHHHHH-------------------HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTT
T ss_pred ccccccCCCCCHHHHHHH-------------------HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCC
Confidence 111000000 00135667776666666654444454456777777776 2
Q ss_pred --CcCccc-----CCcCCcCCCCCCeEECccCccccccCccccC-CCCCCEEeCCCCccceeCCccc-cCCCCCCEEEcc
Q 037651 386 --NSLNGS-----IPQSVGNLKQLLTLVISNNNLSGGIPQFLKN-ISSLYILDMTKNNFSGEIPESI-GSLLTIRFLVLS 456 (750)
Q Consensus 386 --n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~ 456 (750)
+.++.. ++..+..+++|++|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|+.|+++
T Consensus 411 ~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEE
T ss_pred CcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECc
Confidence 223211 011133345555555544 333333333332 4555555555555543333333 334555555555
Q ss_pred CCcCcCCCCc-cccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccC
Q 037651 457 NNHLSGEIPP-SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRS 506 (750)
Q Consensus 457 ~n~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~ 506 (750)
+|.+++.... ....+++|+.|++++|+++......+...++.|+...+..
T Consensus 490 ~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 490 DCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp SCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred CCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 5555322221 2223455555555555543322222322344444444433
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=5.7e-29 Score=283.05 Aligned_cols=172 Identities=15% Similarity=0.100 Sum_probs=80.0
Q ss_pred EEECCCCCCCCCccccccCCCCCCEEeCcCCCCccc---CCc------------ccCCCCCCCEEECcCCCCcccccccc
Q 037651 35 VLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGD---IPD------------GFASLNSLQLLDLSGNSFLEGQLSRN 99 (750)
Q Consensus 35 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~---~~~------------~~~~l~~L~~L~Ls~n~~~~~~~~~~ 99 (750)
.++++.+... .....+.++++|++|+++++..... .|. ....+++|++|++++|. +++..+..
T Consensus 47 ~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~ 124 (594)
T 2p1m_B 47 KVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLEL 124 (594)
T ss_dssp EEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHH
T ss_pred EEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHH
Confidence 4555444321 2233456677788888877653211 111 12245566666666665 33333333
Q ss_pred cC-CCCCCCEEeCcCc-ccccc-cchhhhccccccCCCCccEEEccCCcCcccCCccc----cCCCCCcEEEccCCc--c
Q 037651 100 LG-TLCNLQTLKLSLN-QFRGE-VSDFIDGLSECINSSSLARLELGYNQLTGNLPISL----GYLKNLRYLELWYNS--F 170 (750)
Q Consensus 100 l~-~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~--l 170 (750)
+. .+++|++|++++| .++.. .+.....++ +|++|++++|.+++..+..+ ..+++|++|++++|. +
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~------~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 198 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR------NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEV 198 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCT------TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCC
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCC------CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcC
Confidence 43 4566666666665 33321 222222333 56666666665543332222 244455556555554 1
Q ss_pred ccc-CCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcc
Q 037651 171 LGS-IPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELS 214 (750)
Q Consensus 171 ~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 214 (750)
... ++..+.++++|++|++++|.-.+.++..+..+++|+.|+++
T Consensus 199 ~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 199 SFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred CHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 110 11112234555555555552212244445555555555543
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.4e-25 Score=248.09 Aligned_cols=267 Identities=25% Similarity=0.310 Sum_probs=193.1
Q ss_pred ccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccc
Q 037651 284 LTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLF 363 (750)
Q Consensus 284 L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l 363 (750)
++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. ..+.++.|++++|.+++ +|..+++|++|++++|.+
T Consensus 42 l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPL 113 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC--CCTTCCEEEECSCCCSC-CCCCCTTCCEEEECSCCC
T ss_pred CcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC--cCCCCCEEEcCCCcCCc-CCCCCCCCCEEECcCCcC
Confidence 445555555544 2233221 34555555555554 2333 23455566666665553 333567888888888888
Q ss_pred cCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCcc
Q 037651 364 SGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPES 443 (750)
Q Consensus 364 ~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 443 (750)
+ .+|. .+++|+.|++++|++++ +|.. +++|++|++++|.+++ +|. .+.+|+.|++++|.++ .+|
T Consensus 114 ~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~-- 177 (622)
T 3g06_A 114 T-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP-- 177 (622)
T ss_dssp C-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC--
T ss_pred C-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc--
Confidence 7 4555 36789999999998885 4443 4789999999998885 343 3467889999999988 455
Q ss_pred ccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCC
Q 037651 444 IGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSAL 523 (750)
Q Consensus 444 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 523 (750)
..+++|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|.. +++|+.|++++|++++ +| ..+++|
T Consensus 178 -~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~----~~~L~~L~Ls~N~L~~-lp---~~l~~L 243 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LP---VLPSEL 243 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CC---CCCTTC
T ss_pred -ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC----CCCCCEEEccCCccCc-CC---CCCCcC
Confidence 456889999999999884 4442 478999999999988 67752 6789999999999984 66 456889
Q ss_pred cEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCc
Q 037651 524 HILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKI 603 (750)
Q Consensus 524 ~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 603 (750)
+.|++++|+++ .+|. .+++|+.|+|++|+++ .+
T Consensus 244 ~~L~Ls~N~L~-~lp~---------------------------------------------~~~~L~~L~Ls~N~L~-~l 276 (622)
T 3g06_A 244 KELMVSGNRLT-SLPM---------------------------------------------LPSGLLSLSVYRNQLT-RL 276 (622)
T ss_dssp CEEECCSSCCS-CCCC---------------------------------------------CCTTCCEEECCSSCCC-SC
T ss_pred cEEECCCCCCC-cCCc---------------------------------------------ccccCcEEeCCCCCCC-cC
Confidence 99999999887 3442 3467889999999998 77
Q ss_pred ccccCCCccCcEEEccCCccCcCCCccccCCC
Q 037651 604 PTQIGKLEWLESLDLSRNKLSGSIPPSMVSIR 635 (750)
Q Consensus 604 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 635 (750)
|..+.++++|+.|+|++|++++.+|..+..++
T Consensus 277 p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 277 PESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 88899999999999999999988888766544
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-26 Score=255.16 Aligned_cols=237 Identities=24% Similarity=0.172 Sum_probs=168.7
Q ss_pred CCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEE
Q 037651 350 SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYIL 429 (750)
Q Consensus 350 ~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 429 (750)
+++|+.|++++|.+++..|..+ ..+++|++|++++|.+++..| +..+++|++|++++|.+++.. ..++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGG-TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHH-hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 3467788888887775434444 447788888888888776655 777788888888888777432 23678888
Q ss_pred eCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccc
Q 037651 430 DMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHF 509 (750)
Q Consensus 430 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l 509 (750)
++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+...+++|+.|+|++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 8888887765443 3467788888888887777777777788888888888887666666654477888888888887
Q ss_pred eeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccC
Q 037651 510 NGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHL 589 (750)
Q Consensus 510 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L 589 (750)
++..+ ...+++|+.|+|++|.+++. |..+..+++|
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~-------------------------------------------~~~~~~l~~L 216 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFM-------------------------------------------GPEFQSAAGV 216 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEE-------------------------------------------CGGGGGGTTC
T ss_pred ccccc--cccCCCCCEEECCCCCCCCC-------------------------------------------CHhHcCCCCc
Confidence 75532 33577788888888877742 2235566777
Q ss_pred CeEeccCCcCCCCcccccCCCccCcEEEccCCccC-cCCCccccCCCCCCeEECc
Q 037651 590 GTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLS-GSIPPSMVSIRFLSFLNLS 643 (750)
Q Consensus 590 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~l~ls 643 (750)
+.|+|++|.+++ +|..++.+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 217 ~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 217 TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp SEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 778888888774 6667777778888888888777 5666777777777777765
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-26 Score=240.43 Aligned_cols=243 Identities=21% Similarity=0.191 Sum_probs=203.2
Q ss_pred CCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeC
Q 037651 352 NLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDM 431 (750)
Q Consensus 352 ~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 431 (750)
.++..+++.+.+. ..+..++..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 3555667777775 4555666668899999999999998888889999999999999999987654 899999999999
Q ss_pred CCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCcccee
Q 037651 432 TKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNG 511 (750)
Q Consensus 432 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~ 511 (750)
++|++++.. ..++|++|++++|++++..+. .+++|++|++++|++++..+..+. .+++|++|++++|++.+
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCc
Confidence 999998433 348999999999999966544 367899999999999954444444 49999999999999998
Q ss_pred ecCcccc-CCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCC
Q 037651 512 TIPSELC-KLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLG 590 (750)
Q Consensus 512 ~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~ 590 (750)
..|..+. .+++|++|++++|.+++. |. ...+++|+
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-------------------------------------------~~~l~~L~ 194 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-KG-------------------------------------------QVVFAKLK 194 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-EC-------------------------------------------CCCCTTCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc-cc-------------------------------------------ccccccCC
Confidence 8777764 789999999999999843 21 22477899
Q ss_pred eEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcce-ecCC
Q 037651 591 TLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLS-GEIP 652 (750)
Q Consensus 591 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~-g~ip 652 (750)
+|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++. +.+|
T Consensus 195 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 195 TLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp EEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred EEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 99999999995 5556999999999999999999 47888999999999999999998 4433
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=9.8e-26 Score=247.76 Aligned_cols=221 Identities=22% Similarity=0.187 Sum_probs=193.0
Q ss_pred CCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEE
Q 037651 375 TPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLV 454 (750)
Q Consensus 375 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 454 (750)
+++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 4589999999999999888999999999999999999997665 8999999999999999985432 38999999
Q ss_pred ccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCcccc-CCCCCcEEEcccCcC
Q 037651 455 LSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELC-KLSALHILDLSHNNL 533 (750)
Q Consensus 455 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l 533 (750)
+++|.+++..+. .+++|+.|++++|.+++..|..+.. +++|+.|++++|.+++.+|..+. .+++|+.|+|++|.+
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 999999976554 4578999999999999766666654 99999999999999998888886 799999999999999
Q ss_pred CCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccC
Q 037651 534 SGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWL 613 (750)
Q Consensus 534 ~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 613 (750)
++..+ ...+++|+.|+|++|.+++. |..+..+++|
T Consensus 182 ~~~~~--------------------------------------------~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L 216 (487)
T 3oja_A 182 YDVKG--------------------------------------------QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGV 216 (487)
T ss_dssp CEEEC--------------------------------------------CCCCTTCCEEECCSSCCCEE-CGGGGGGTTC
T ss_pred ccccc--------------------------------------------cccCCCCCEEECCCCCCCCC-CHhHcCCCCc
Confidence 86422 23478899999999999965 4459999999
Q ss_pred cEEEccCCccCcCCCccccCCCCCCeEECcCCcce-ecCC
Q 037651 614 ESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLS-GEIP 652 (750)
Q Consensus 614 ~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~-g~ip 652 (750)
+.||+++|.+++ +|..+..+++|+.|++++|++. +.+|
T Consensus 217 ~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 217 TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp SEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred cEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 999999999996 7888999999999999999998 4444
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.2e-24 Score=221.29 Aligned_cols=209 Identities=21% Similarity=0.177 Sum_probs=133.0
Q ss_pred CCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecC
Q 037651 401 QLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLG 480 (750)
Q Consensus 401 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 480 (750)
+|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555555555555555554444455555555555555555555555555666666666666
Q ss_pred CCcccccCChhhhhcCCCCCEEEccCccceee-cCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccC
Q 037651 481 ENQLSGNIPAWIGESMPSLSILRLRSNHFNGT-IPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQG 559 (750)
Q Consensus 481 ~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 559 (750)
+|++.+ ++...+..+++|++|++++|++.+. +|..+..+++|++|++++|++++..+..
T Consensus 109 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------------- 168 (276)
T 2z62_A 109 ETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD------------------- 168 (276)
T ss_dssp TSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-------------------
T ss_pred CCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH-------------------
Confidence 666653 3322122366666666666666642 4677777788888888888777543332
Q ss_pred ceEEEEecceEeecccccccchhhhccccCC----eEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCC
Q 037651 560 SLQVAIKGTQYVYQQTLYLMPVELTSLLHLG----TLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIR 635 (750)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 635 (750)
+..++.|+ +|++++|++++..+..+. ..+|+.|++++|++++..+..+..++
T Consensus 169 -----------------------~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~ 224 (276)
T 2z62_A 169 -----------------------LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLT 224 (276)
T ss_dssp -----------------------GHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred -----------------------hhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccc
Confidence 33333333 788899988865555444 45899999999999877666778899
Q ss_pred CCCeEECcCCcceecCCC
Q 037651 636 FLSFLNLSFNNLSGEIPT 653 (750)
Q Consensus 636 ~L~~l~ls~N~l~g~ip~ 653 (750)
+|++|++++|++.|..|.
T Consensus 225 ~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 225 SLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp SCCEEECCSSCBCCCTTT
T ss_pred cccEEEccCCcccccCCc
Confidence 999999999999887664
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.5e-24 Score=220.60 Aligned_cols=225 Identities=23% Similarity=0.240 Sum_probs=181.7
Q ss_pred EEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCc
Q 037651 356 LYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNN 435 (750)
Q Consensus 356 L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 435 (750)
.+..+..++ .+|..+ .++|++|++++|++++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|+
T Consensus 12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 444445554 566654 3468888888888887777788888899999999998887777788889999999999999
Q ss_pred cceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccc-cCChhhhhcCCCCCEEEccCccceeecC
Q 037651 436 FSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSG-NIPAWIGESMPSLSILRLRSNHFNGTIP 514 (750)
Q Consensus 436 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~~l~~L~~L~Ls~n~l~~~~p 514 (750)
+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+ .+|..+.. +++|++|++++|++++..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECCSSCCCEECG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-CCCCCEEECCCCCCCcCCH
Confidence 987777888889999999999999987777678899999999999999875 35777765 8999999999999987777
Q ss_pred ccccCCCCCc----EEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCC
Q 037651 515 SELCKLSALH----ILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLG 590 (750)
Q Consensus 515 ~~l~~l~~L~----~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~ 590 (750)
..+..+++|+ .|++++|++++..+.. ....+|+
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~-------------------------------------------~~~~~L~ 203 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-------------------------------------------FKEIRLK 203 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTS-------------------------------------------SCSCCEE
T ss_pred HHhhhhhhccccceeeecCCCcccccCccc-------------------------------------------cCCCccc
Confidence 7777666666 8999999988543332 2233689
Q ss_pred eEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCC
Q 037651 591 TLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIP 628 (750)
Q Consensus 591 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 628 (750)
+|++++|++++..+..++.+++|+.|++++|++.+..|
T Consensus 204 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred EEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99999999997777778999999999999999997554
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2e-23 Score=211.39 Aligned_cols=205 Identities=24% Similarity=0.274 Sum_probs=141.9
Q ss_pred CCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCC
Q 037651 402 LLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGE 481 (750)
Q Consensus 402 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 481 (750)
.++++++++.++ .+|..+. +++++|++++|++++..+..|..+++|++|++++|+++...+..|.++++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 455666666555 2343332 4566666666666654445566666666677766666654455566677777777777
Q ss_pred CcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCce
Q 037651 482 NQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSL 561 (750)
Q Consensus 482 n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~ 561 (750)
|++. .+|...+..+++|++|++++|++++..|..+..+++|++|++++|++++..+.
T Consensus 95 n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---------------------- 151 (270)
T 2o6q_A 95 NKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG---------------------- 151 (270)
T ss_dssp SCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------------------
T ss_pred CcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh----------------------
Confidence 7776 45544444477777777777777766666677888888888888877743222
Q ss_pred EEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEE
Q 037651 562 QVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLN 641 (750)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 641 (750)
.+..+++|++|+|++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|+
T Consensus 152 --------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 152 --------------------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp --------------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred --------------------HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEE
Confidence 355677788888888888877677788888888888888888876666778888888888
Q ss_pred CcCCcceecCC
Q 037651 642 LSFNNLSGEIP 652 (750)
Q Consensus 642 ls~N~l~g~ip 652 (750)
+++|++.+..+
T Consensus 212 l~~N~~~c~c~ 222 (270)
T 2o6q_A 212 LQENPWDCTCN 222 (270)
T ss_dssp CCSSCBCCSSS
T ss_pred ecCCCeeCCCc
Confidence 88888876543
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.9e-23 Score=209.31 Aligned_cols=203 Identities=27% Similarity=0.354 Sum_probs=164.3
Q ss_pred CcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEEC
Q 037651 7 SIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDL 86 (750)
Q Consensus 7 ~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 86 (750)
+.+.++++++.++.+|... .+++++|++++|.+++..+..|.++++|++|++++|.++...+..|.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCC----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 5778899999888877522 267889999999988777778888999999999999888666667788899999999
Q ss_pred cCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEcc
Q 037651 87 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELW 166 (750)
Q Consensus 87 s~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 166 (750)
++|. +....+..+..+++|++|++++|.+++..+..++.++ +|++|++++|.+++..+..+..+++|++|+++
T Consensus 93 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 93 TDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp CSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc------CCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 9888 5555556678888899999988888888777777776 88888888888886555667888888888888
Q ss_pred CCcccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCcc
Q 037651 167 YNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG 220 (750)
Q Consensus 167 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 220 (750)
+|.+.+..+..|.++++|++|++++|++++..+..+..+++|+.|++++|++..
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 888887766678888888888888888886666667788888888888888754
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=3.9e-23 Score=210.99 Aligned_cols=203 Identities=25% Similarity=0.272 Sum_probs=136.6
Q ss_pred CCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEE
Q 037651 398 NLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSL 477 (750)
Q Consensus 398 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 477 (750)
++++++++++++|.++ .+|..+. ++++.|++++|++++..+..+..+++|++|++++|.+++..+ ...+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence 3455556666655555 2333332 456666666666665555556666666666666666653322 2566677777
Q ss_pred ecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccc
Q 037651 478 DLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIY 557 (750)
Q Consensus 478 ~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~ 557 (750)
++++|++. .+|..+.. +++|++|++++|++++..|..|..+++|++|++++|++++..|.
T Consensus 83 ~Ls~N~l~-~l~~~~~~-l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------ 142 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG------------------ 142 (290)
T ss_dssp ECCSSCCS-SCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT------------------
T ss_pred ECCCCcCC-cCchhhcc-CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh------------------
Confidence 77777776 56655543 77777777777777766566777788888888888877743322
Q ss_pred cCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCC
Q 037651 558 QGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFL 637 (750)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 637 (750)
.|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+..|
T Consensus 143 ------------------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L 197 (290)
T 1p9a_G 143 ------------------------LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197 (290)
T ss_dssp ------------------------TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred ------------------------hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccC
Confidence 3456677788888888888666666778888888888888887 577777777888
Q ss_pred CeEECcCCcceec
Q 037651 638 SFLNLSFNNLSGE 650 (750)
Q Consensus 638 ~~l~ls~N~l~g~ 650 (750)
+.+++++|++.|.
T Consensus 198 ~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 198 PFAFLHGNPWLCN 210 (290)
T ss_dssp SEEECCSCCBCCS
T ss_pred CeEEeCCCCccCc
Confidence 8888888887664
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=7e-23 Score=209.10 Aligned_cols=204 Identities=27% Similarity=0.255 Sum_probs=176.7
Q ss_pred CCCCCCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCC
Q 037651 2 FSKLPSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSL 81 (750)
Q Consensus 2 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 81 (750)
++++++++++++++++++.+|... .+++++|+|++|.+++..+..|..+++|++|+|++|.+++..+ .+.+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCC----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 457889999999999999987622 2789999999999998888899999999999999999986433 3789999
Q ss_pred CEEECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCc
Q 037651 82 QLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLR 161 (750)
Q Consensus 82 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 161 (750)
++|++++|.+ . .+|..+..+++|++|++++|++++..+..|..++ +|++|++++|++++..+..|..+++|+
T Consensus 80 ~~L~Ls~N~l-~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 80 GTLDLSHNQL-Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG------ELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp CEEECCSSCC-S-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT------TCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CEEECCCCcC-C-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC------CCCEEECCCCCCCccChhhcccccCCC
Confidence 9999999985 3 5788889999999999999999988888888877 999999999999977677788999999
Q ss_pred EEEccCCcccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCcc
Q 037651 162 YLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG 220 (750)
Q Consensus 162 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 220 (750)
+|++++|++++..+..+.++++|++|++++|+++ .+|..+...++|+.+++++|++..
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 9999999998766667788999999999999998 678888888899999999998764
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=3e-23 Score=210.31 Aligned_cols=203 Identities=23% Similarity=0.299 Sum_probs=145.1
Q ss_pred CCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEE
Q 037651 398 NLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSL 477 (750)
Q Consensus 398 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 477 (750)
.+++|+.|++++|.+... ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..|.++++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 356666666666666532 235666777777777777664 2 356667777777777777776666667777777777
Q ss_pred ecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccc
Q 037651 478 DLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIY 557 (750)
Q Consensus 478 ~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~ 557 (750)
++++|+++ .+|...+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 115 ~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------ 175 (272)
T 3rfs_A 115 VLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG------------------ 175 (272)
T ss_dssp ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------------
T ss_pred ECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH------------------
Confidence 77777777 34444333477888888888887766666677888888888888887754332
Q ss_pred cCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCC
Q 037651 558 QGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFL 637 (750)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 637 (750)
.++.+++|+.|++++|++++..|..++.+++|+.|++++|++.+..| .|
T Consensus 176 ------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l 224 (272)
T 3rfs_A 176 ------------------------VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GI 224 (272)
T ss_dssp ------------------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TT
T ss_pred ------------------------HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HH
Confidence 34567778888888888887777778888888888888888876543 57
Q ss_pred CeEECcCCcceecCCCC
Q 037651 638 SFLNLSFNNLSGEIPTA 654 (750)
Q Consensus 638 ~~l~ls~N~l~g~ip~~ 654 (750)
+++++++|+++|.+|..
T Consensus 225 ~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 225 RYLSEWINKHSGVVRNS 241 (272)
T ss_dssp HHHHHHHHHTGGGBBCT
T ss_pred HHHHHHHHhCCCcccCc
Confidence 88888888888888864
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.2e-24 Score=230.48 Aligned_cols=255 Identities=22% Similarity=0.224 Sum_probs=162.9
Q ss_pred EEeecccccCCCCcchhccCCCCCEEecCCCcCcccCC----cCCcCCC-CCCeEECccCccccccCccccCC-----CC
Q 037651 356 LYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIP----QSVGNLK-QLLTLVISNNNLSGGIPQFLKNI-----SS 425 (750)
Q Consensus 356 L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~ 425 (750)
++++.|.+++.+|.... ..++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45566666655554332 24457777777777765554 5566666 77777777777776655555553 77
Q ss_pred CCEEeCCCCccceeCCcccc----CC-CCCCEEEccCCcCcCCCCccc----cC-CCCCCEEecCCCcccccCCh----h
Q 037651 426 LYILDMTKNNFSGEIPESIG----SL-LTIRFLVLSNNHLSGEIPPSL----KN-CSLMDSLDLGENQLSGNIPA----W 491 (750)
Q Consensus 426 L~~L~Ls~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~L~~n~~~~~~p~----~ 491 (750)
|++|++++|++++..+..+. .+ ++|++|++++|++++..+..+ .. .++|++|++++|++.+..+. .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 77888887777765555433 33 677888888887775555443 23 35788888888877743332 2
Q ss_pred hhhcCC-CCCEEEccCccceeecCccc----cCC-CCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEE
Q 037651 492 IGESMP-SLSILRLRSNHFNGTIPSEL----CKL-SALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAI 565 (750)
Q Consensus 492 ~~~~l~-~L~~L~Ls~n~l~~~~p~~l----~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~ 565 (750)
+.. ++ +|++|++++|++++..+..+ ..+ ++|++|||++|.+++.-.
T Consensus 162 l~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~--------------------------- 213 (362)
T 3goz_A 162 LAA-IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY--------------------------- 213 (362)
T ss_dssp HHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH---------------------------
T ss_pred Hhc-CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH---------------------------
Confidence 232 33 78888888888776555433 344 478888888887764211
Q ss_pred ecceEeecccccccchhhhc-cccCCeEeccCCcCCCCcc----cccCCCccCcEEEccCCccCcCC-------CccccC
Q 037651 566 KGTQYVYQQTLYLMPVELTS-LLHLGTLNLSGNQLVGKIP----TQIGKLEWLESLDLSRNKLSGSI-------PPSMVS 633 (750)
Q Consensus 566 ~~~~~~~~~~~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~-------p~~l~~ 633 (750)
..++..+.. .++|++|+|++|.+++..+ ..+..+++|+.|++++|.+.+.. +..+..
T Consensus 214 -----------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~ 282 (362)
T 3goz_A 214 -----------AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282 (362)
T ss_dssp -----------HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT
T ss_pred -----------HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc
Confidence 113344555 3478888888888876544 33466778888888888754332 335667
Q ss_pred CCCCCeEECcCCcceec
Q 037651 634 IRFLSFLNLSFNNLSGE 650 (750)
Q Consensus 634 l~~L~~l~ls~N~l~g~ 650 (750)
+++|++||+++|++.+.
T Consensus 283 l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 283 IQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCEEEEECTTSCBCCGG
T ss_pred CCceEEEecCCCcCCCc
Confidence 77788888888887655
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.7e-23 Score=208.20 Aligned_cols=202 Identities=27% Similarity=0.303 Sum_probs=135.1
Q ss_pred CCCCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCE
Q 037651 4 KLPSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQL 83 (750)
Q Consensus 4 ~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 83 (750)
.+++|++|+++++.+...+ .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|.++++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCccccc---ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3456777777777766553 355667777777777777653 35667777777777777777666666677777777
Q ss_pred EECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEE
Q 037651 84 LDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYL 163 (750)
Q Consensus 84 L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 163 (750)
|++++|. +.+..+..++.+++|++|++++|.+++..+..++.++ +|++|++++|++++..+..++.+++|++|
T Consensus 114 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 114 LVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT------NLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc------cCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 7777776 4444455566777777777777777766665555555 67777777777775555556677777777
Q ss_pred EccCCcccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCccccCh
Q 037651 164 ELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITE 224 (750)
Q Consensus 164 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 224 (750)
++++|++.+..+..+..+++|++|++++|.+.+. +++|+.+++..|.++|.+|.
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 7777777766666667777777777777766533 44566667777777666654
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.7e-24 Score=231.76 Aligned_cols=247 Identities=20% Similarity=0.234 Sum_probs=173.9
Q ss_pred CCCcchhccCCCCCEEecCCCcCccc----CCcCCcCCCCCCeEECccC---ccccccCccc-------cCCCCCCEEeC
Q 037651 366 PIPNDLGQKTPFLTDLDISFNSLNGS----IPQSVGNLKQLLTLVISNN---NLSGGIPQFL-------KNISSLYILDM 431 (750)
Q Consensus 366 ~i~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~L~~n---~l~~~~~~~l-------~~l~~L~~L~L 431 (750)
.++..+.. +++|++|++++|.+... ++..+..+++|++|++++| ++.+.+|..+ ..+++|++|+|
T Consensus 23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 34444433 67788888888877754 3334667788888888875 3344444444 67788888888
Q ss_pred CCCccce----eCCccccCCCCCCEEEccCCcCcCCCCcc----ccCC---------CCCCEEecCCCccc-ccCCh---
Q 037651 432 TKNNFSG----EIPESIGSLLTIRFLVLSNNHLSGEIPPS----LKNC---------SLMDSLDLGENQLS-GNIPA--- 490 (750)
Q Consensus 432 s~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L~L~~n~~~-~~~p~--- 490 (750)
++|.+++ .+|..+..+++|++|++++|.++...+.. +..+ ++|++|++++|++. +.+|.
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 8888876 46667777888888888888886443333 3333 78888888888886 34442
Q ss_pred hhhhcCCCCCEEEccCcccee-----ecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEE
Q 037651 491 WIGESMPSLSILRLRSNHFNG-----TIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAI 565 (750)
Q Consensus 491 ~~~~~l~~L~~L~Ls~n~l~~-----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~ 565 (750)
.+. .+++|+.|++++|++.. ..|..+..+++|+.|+|++|.++..-
T Consensus 182 ~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---------------------------- 232 (386)
T 2ca6_A 182 TFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---------------------------- 232 (386)
T ss_dssp HHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----------------------------
T ss_pred HHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH----------------------------
Confidence 333 37888888888888862 34447778888888888888875210
Q ss_pred ecceEeecccccccchhhhccccCCeEeccCCcCCCC----ccccc--CCCccCcEEEccCCccCc----CCCccc-cCC
Q 037651 566 KGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGK----IPTQI--GKLEWLESLDLSRNKLSG----SIPPSM-VSI 634 (750)
Q Consensus 566 ~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l 634 (750)
...+|..+..+++|+.|+|++|.+++. +|..+ +.+++|+.|+|++|++++ .+|..+ .++
T Consensus 233 ----------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l 302 (386)
T 2ca6_A 233 ----------SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302 (386)
T ss_dssp ----------HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC
Confidence 011445667778888888888888765 56666 448888888888888887 477777 567
Q ss_pred CCCCeEECcCCcceecCC
Q 037651 635 RFLSFLNLSFNNLSGEIP 652 (750)
Q Consensus 635 ~~L~~l~ls~N~l~g~ip 652 (750)
++|++|++++|++++..|
T Consensus 303 ~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 303 PDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TTCCEEECTTSBSCTTSH
T ss_pred CCceEEEccCCcCCcchh
Confidence 888888888888887653
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=4.3e-23 Score=213.57 Aligned_cols=204 Identities=24% Similarity=0.227 Sum_probs=105.6
Q ss_pred CCCCEEecCCCcCcccCCcCC--cCCCCCCeEECccCccccccC----ccccCCCCCCEEeCCCCccceeCCccccCCCC
Q 037651 376 PFLTDLDISFNSLNGSIPQSV--GNLKQLLTLVISNNNLSGGIP----QFLKNISSLYILDMTKNNFSGEIPESIGSLLT 449 (750)
Q Consensus 376 ~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 449 (750)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 446666666666665555555 555666666666666554332 12233445555555555554444444444444
Q ss_pred CCEEEccCCcCcCC--C--CccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCc----cccCCC
Q 037651 450 IRFLVLSNNHLSGE--I--PPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPS----ELCKLS 521 (750)
Q Consensus 450 L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~ 521 (750)
|++|++++|++.+. + +..+.. +++|++|++++|+++ .+|. .+..++
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~-------------------------l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHK-------------------------FPAIQNLALRNTGME-TPTGVCAALAAAGV 224 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTS-------------------------SCCCCSCBCCSSCCC-CHHHHHHHHHHHTC
T ss_pred CCEEECCCCCCccchhhhHHHhhhc-------------------------CCCCCEEECCCCCCC-chHHHHHHHHhcCC
Confidence 44444444444321 1 111233 445555555555553 1211 134455
Q ss_pred CCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCC
Q 037651 522 ALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVG 601 (750)
Q Consensus 522 ~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~ 601 (750)
+|++|||++|++++.+|..+..+ ..+++|++|+|++|+++
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~---------------------------------------~~~~~L~~L~Ls~N~l~- 264 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRC---------------------------------------MWSSALNSLNLSFAGLE- 264 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSC---------------------------------------CCCTTCCCEECCSSCCC-
T ss_pred CCCEEECCCCCCCccchhhHHhc---------------------------------------cCcCcCCEEECCCCCCC-
Confidence 56666666666555444332211 11245666666666666
Q ss_pred CcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCccee
Q 037651 602 KIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSG 649 (750)
Q Consensus 602 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g 649 (750)
.+|..+. ++|+.|||++|++++. |. +..+++|++|++++|+++.
T Consensus 265 ~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 265 QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 4555553 5677777777777653 33 5566777777777776653
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=3.6e-23 Score=214.09 Aligned_cols=201 Identities=20% Similarity=0.189 Sum_probs=133.3
Q ss_pred CCCCEEeCCCCccceeCCccc--cCCCCCCEEEccCCcCcCCCC----ccccCCCCCCEEecCCCcccccCChhhhhcCC
Q 037651 424 SSLYILDMTKNNFSGEIPESI--GSLLTIRFLVLSNNHLSGEIP----PSLKNCSLMDSLDLGENQLSGNIPAWIGESMP 497 (750)
Q Consensus 424 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~ 497 (750)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|..+. .++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR-AFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC-CCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc-cCC
Confidence 345555555555555555544 455555555555555554333 2334566666666666666533333332 366
Q ss_pred CCCEEEccCccceee--c--CccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeec
Q 037651 498 SLSILRLRSNHFNGT--I--PSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQ 573 (750)
Q Consensus 498 ~L~~L~Ls~n~l~~~--~--p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (750)
+|++|++++|++.+. + +..+..+++|++|++++|+++. +|.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~---------------------------------- 214 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTG---------------------------------- 214 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHH----------------------------------
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHH----------------------------------
Confidence 666677766665432 1 2334788999999999999873 221
Q ss_pred ccccccchh-hhccccCCeEeccCCcCCCCcccccCCC---ccCcEEEccCCccCcCCCccccCCCCCCeEECcCCccee
Q 037651 574 QTLYLMPVE-LTSLLHLGTLNLSGNQLVGKIPTQIGKL---EWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSG 649 (750)
Q Consensus 574 ~~~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g 649 (750)
.+.. ++.+++|++|+|++|++++.+|..++.+ ++|+.|+|++|+++ .+|..+. ++|++||+++|++++
T Consensus 215 -----~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 215 -----VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp -----HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred -----HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence 1112 4778999999999999999889888887 69999999999999 6788775 799999999999998
Q ss_pred cCCCCCCCCCcccccccCCC
Q 037651 650 EIPTANQFQTSLIRQFMRIP 669 (750)
Q Consensus 650 ~ip~~~~~~~~~~~~~~~n~ 669 (750)
. |.-..+.........+|+
T Consensus 287 ~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 287 A-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp C-CCTTSCCCCSCEECSSTT
T ss_pred C-chhhhCCCccEEECcCCC
Confidence 3 332334444444455665
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.5e-23 Score=218.37 Aligned_cols=251 Identities=16% Similarity=0.187 Sum_probs=192.6
Q ss_pred CCcEEEeecccccCCCCcchhccC--CCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccc-cCccccCCCCCCE
Q 037651 352 NLTKLYLRDNLFSGPIPNDLGQKT--PFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGG-IPQFLKNISSLYI 428 (750)
Q Consensus 352 ~L~~L~l~~n~l~~~i~~~~~~~~--~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~ 428 (750)
.++.++++++.+. +..+ ..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~-~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVT-GRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHH-HHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHH-HhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4677777777665 2222 224 7889999999988877665 44689999999999998765 7778889999999
Q ss_pred EeCCCCccceeCCccccCCCCCCEEEccCC-cCcCC-CCccccCCCCCCEEecCCC-ccccc-CChhhhhcCC-CCCEEE
Q 037651 429 LDMTKNNFSGEIPESIGSLLTIRFLVLSNN-HLSGE-IPPSLKNCSLMDSLDLGEN-QLSGN-IPAWIGESMP-SLSILR 503 (750)
Q Consensus 429 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~~~~~-~p~~~~~~l~-~L~~L~ 503 (750)
|++++|.+++..+..+..+++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++..+.. ++ +|++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH-VSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH-SCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh-cccCCCEEE
Confidence 999999988888888888999999999999 67653 6666888999999999999 88754 4555554 88 999999
Q ss_pred ccCc--cce-eecCccccCCCCCcEEEcccCc-CCCcCCccccccccCccCCCCCccccCceEEEEecceEeeccccccc
Q 037651 504 LRSN--HFN-GTIPSELCKLSALHILDLSHNN-LSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLM 579 (750)
Q Consensus 504 Ls~n--~l~-~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (750)
+++| .++ +.+|..+..+++|+.|++++|. +++..+
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~----------------------------------------- 240 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF----------------------------------------- 240 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-----------------------------------------
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-----------------------------------------
Confidence 9999 454 4567777889999999999998 554433
Q ss_pred chhhhccccCCeEeccCCc-CCCCcccccCCCccCcEEEccCCccCcCCCccccCC-CCCCeEECcCCcceecCCCC
Q 037651 580 PVELTSLLHLGTLNLSGNQ-LVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSI-RFLSFLNLSFNNLSGEIPTA 654 (750)
Q Consensus 580 p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~l~ls~N~l~g~ip~~ 654 (750)
..+..+++|++|++++|. ++......++++++|+.|++++| ++. ..+..+ ..+..|++++|+++|..|..
T Consensus 241 -~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 241 -QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp -GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred -HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 346677889999999995 33222236788999999999999 432 233333 34777889999999988753
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=3.2e-23 Score=217.61 Aligned_cols=235 Identities=20% Similarity=0.246 Sum_probs=189.8
Q ss_pred CCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCccc-CCcCCcCCCCCCeEECccCccccccCccccCCCCCCEE
Q 037651 351 SNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGS-IPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYIL 429 (750)
Q Consensus 351 ~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 429 (750)
+.++.|++++|.+.+..+. ++ .+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 5788888888888766554 33 389999999999998765 77778889999999999999988888889999999999
Q ss_pred eCCCC-cccee-CCccccCCCCCCEEEccCC-cCcCC-CCccccCCC-CCCEEecCCC--ccc-ccCChhhhhcCCCCCE
Q 037651 430 DMTKN-NFSGE-IPESIGSLLTIRFLVLSNN-HLSGE-IPPSLKNCS-LMDSLDLGEN--QLS-GNIPAWIGESMPSLSI 501 (750)
Q Consensus 430 ~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n--~~~-~~~p~~~~~~l~~L~~ 501 (750)
++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+.. +++|+.
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~ 226 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-CPNLVH 226 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH-CTTCSE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh-CCCCCE
Confidence 99999 67753 6666788999999999999 88854 577788899 9999999999 454 356665554 999999
Q ss_pred EEccCcc-ceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccc
Q 037651 502 LRLRSNH-FNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMP 580 (750)
Q Consensus 502 L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 580 (750)
|++++|. +++..+..+..+++|++|++++|. +..|..+
T Consensus 227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~--------------------------------------- 265 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETL--------------------------------------- 265 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGG---------------------------------------
T ss_pred EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHH---------------------------------------
Confidence 9999999 777778889999999999999996 2222211
Q ss_pred hhhhccccCCeEeccCCcCCCCcccccCCC-ccCcEEEccCCccCcCCCccccC
Q 037651 581 VELTSLLHLGTLNLSGNQLVGKIPTQIGKL-EWLESLDLSRNKLSGSIPPSMVS 633 (750)
Q Consensus 581 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~ 633 (750)
..++.+++|++|++++| ++. +.+..+ ..++.|++++|++++..|..+..
T Consensus 266 ~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp GGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 24677899999999999 442 234444 34788889999999999987654
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=5e-21 Score=191.45 Aligned_cols=179 Identities=26% Similarity=0.263 Sum_probs=117.9
Q ss_pred CcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEEC
Q 037651 7 SIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDL 86 (750)
Q Consensus 7 ~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 86 (750)
+.++++++++.++.+|... .+++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI----PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC----CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCC----CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4577788888777776522 157778888888877777777777778888888887777766667777777777777
Q ss_pred cCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEcc
Q 037651 87 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELW 166 (750)
Q Consensus 87 s~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 166 (750)
++|. +....+..|..+++|++|++++|++++..+..+..++ +|++|+|++|++++..+..+..+++|++|+++
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT------KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC------cccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 7777 4444455566777777777777776655555555554 66666666666664444455556666666666
Q ss_pred CCcccccCCccccCCCCCCeeecccccCCc
Q 037651 167 YNSFLGSIPPSIGNLTFLEELYLTSNQMNG 196 (750)
Q Consensus 167 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 196 (750)
+|++.+..+..+..+++|++|++++|.+.+
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 666555544455555555555555555553
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1e-21 Score=194.97 Aligned_cols=196 Identities=17% Similarity=0.201 Sum_probs=120.2
Q ss_pred CCCeEECccCccccccCccccCCCCCCEEeCCCCc-cceeCCccccCCCCCCEEEccC-CcCcCCCCccccCCCCCCEEe
Q 037651 401 QLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNN-FSGEIPESIGSLLTIRFLVLSN-NHLSGEIPPSLKNCSLMDSLD 478 (750)
Q Consensus 401 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 478 (750)
+|++|++++|++++..+..|..+++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444445555555555555554 4434444555555555555555 555544445555666666666
Q ss_pred cCCCcccccCChhhhhcCCCCC---EEEccCc-cceeecCccccCCCCCc-EEEcccCcCCCcCCccccccccCccCCCC
Q 037651 479 LGENQLSGNIPAWIGESMPSLS---ILRLRSN-HFNGTIPSELCKLSALH-ILDLSHNNLSGPIPHCVGDFSAMKVKPPD 553 (750)
Q Consensus 479 L~~n~~~~~~p~~~~~~l~~L~---~L~Ls~n-~l~~~~p~~l~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~ 553 (750)
+++|+++ .+|. +. .+++|+ .|++++| ++++..+..+..+++|+ .|++++|+++ .+|..
T Consensus 112 l~~n~l~-~lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~------------- 174 (239)
T 2xwt_C 112 IFNTGLK-MFPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY------------- 174 (239)
T ss_dssp EEEECCC-SCCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT-------------
T ss_pred CCCCCCc-cccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh-------------
Confidence 6666665 3554 22 355665 7777777 66655555677777777 7777777776 44421
Q ss_pred CccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCc-CCCCcccccCCC-ccCcEEEccCCccCcCCCccc
Q 037651 554 TEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQ-LVGKIPTQIGKL-EWLESLDLSRNKLSGSIPPSM 631 (750)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l 631 (750)
.+.. ++|+.|++++|+ +++..+..|..+ ++|+.||+++|++++ +|..
T Consensus 175 ----------------------------~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~- 223 (239)
T 2xwt_C 175 ----------------------------AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK- 223 (239)
T ss_dssp ----------------------------TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-
T ss_pred ----------------------------hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-
Confidence 1222 567788888884 776666777888 888888888888874 4443
Q ss_pred cCCCCCCeEECcCC
Q 037651 632 VSIRFLSFLNLSFN 645 (750)
Q Consensus 632 ~~l~~L~~l~ls~N 645 (750)
.+++|+.|+++++
T Consensus 224 -~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 -GLEHLKELIARNT 236 (239)
T ss_dssp -TCTTCSEEECTTC
T ss_pred -HhccCceeeccCc
Confidence 5677888888776
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.7e-21 Score=199.38 Aligned_cols=192 Identities=24% Similarity=0.357 Sum_probs=130.0
Q ss_pred CCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEE
Q 037651 375 TPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLV 454 (750)
Q Consensus 375 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 454 (750)
+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|++++ ++ .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 5678888888887764 33 46677778888888887775433 7777778888888777764 33 566777777777
Q ss_pred ccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCC
Q 037651 455 LSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLS 534 (750)
Q Consensus 455 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 534 (750)
+++|++++. +. +..+++|++|++++|+++ .++. +. .+++|+.|++++|++++. +. +..+++|+.|++++|+++
T Consensus 114 l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 114 LTSTQITDV-TP-LAGLSNLQVLYLDLNQIT-NISP-LA-GLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CTTSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCc-hh-hcCCCCCCEEECCCCccC-cCcc-cc-CCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccC
Confidence 777777743 32 777777777777777776 3443 33 377777777777777643 32 667777777777777766
Q ss_pred CcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCc
Q 037651 535 GPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLE 614 (750)
Q Consensus 535 ~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 614 (750)
+.. .+..+++|++|+|++|++++..| +..+++|+
T Consensus 187 ~~~--------------------------------------------~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~ 220 (308)
T 1h6u_A 187 DIS--------------------------------------------PLASLPNLIEVHLKNNQISDVSP--LANTSNLF 220 (308)
T ss_dssp CCG--------------------------------------------GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCC
T ss_pred cCh--------------------------------------------hhcCCCCCCEEEccCCccCcccc--ccCCCCCC
Confidence 321 14456667777777777765442 66777777
Q ss_pred EEEccCCccCc
Q 037651 615 SLDLSRNKLSG 625 (750)
Q Consensus 615 ~L~Ls~N~l~~ 625 (750)
.|++++|++++
T Consensus 221 ~L~l~~N~i~~ 231 (308)
T 1h6u_A 221 IVTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEccCCeeec
Confidence 77777777764
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2e-23 Score=223.41 Aligned_cols=193 Identities=19% Similarity=0.199 Sum_probs=119.0
Q ss_pred CCCCCCCcEEECCCCCCCCCcc----ccccCCCCCCEEeCcCCC---CcccCCccc-------CCCCCCCEEECcCCCCc
Q 037651 27 SLNFTSLQVLDLSNNGFNSTIP----HWLFNITNLLSLDLNSND---LQGDIPDGF-------ASLNSLQLLDLSGNSFL 92 (750)
Q Consensus 27 ~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~---i~~~~~~~~-------~~l~~L~~L~Ls~n~~~ 92 (750)
+..+++|++|+|++|.++...+ ..+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|++|. +
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l 106 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-F 106 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-C
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-C
Confidence 4456777777777777765433 335577777777777753 334444443 677777777777777 4
Q ss_pred cc----ccccccCCCCCCCEEeCcCcccccccchhhhcc-ccc------cCCCCccEEEccCCcCc-ccCC---ccccCC
Q 037651 93 EG----QLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGL-SEC------INSSSLARLELGYNQLT-GNLP---ISLGYL 157 (750)
Q Consensus 93 ~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~~------~~~~~L~~L~L~~n~l~-~~~~---~~l~~l 157 (750)
.. .++..+..+++|++|++++|.+....+..+... ..+ ...++|++|++++|+++ +.++ ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 43 355566777777777777777765444333321 000 00026777777777775 3333 355566
Q ss_pred CCCcEEEccCCcccc-----cCCccccCCCCCCeeecccccCC----cccchhccCCCCCCEEEcccCcCcc
Q 037651 158 KNLRYLELWYNSFLG-----SIPPSIGNLTFLEELYLTSNQMN----GKFPESFGQLSAIRVLELSDNQWEG 220 (750)
Q Consensus 158 ~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~ 220 (750)
++|++|++++|.+.. ..|..+.++++|++|+|++|.++ ..+|..+..+++|++|++++|.+++
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 777777777777662 23335666777777777777764 4556666677777777777777654
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.6e-22 Score=214.08 Aligned_cols=265 Identities=21% Similarity=0.145 Sum_probs=127.6
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCcc----ccccCCC-CCCEEeCcCCCCcccCCcccCCC-----CC
Q 037651 11 LHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIP----HWLFNIT-NLLSLDLNSNDLQGDIPDGFASL-----NS 80 (750)
Q Consensus 11 L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-----~~ 80 (750)
++++.+++++.++ ......++|++|+|++|.+++..+ ..+..++ +|++|+|++|.+.+..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4555555555443 223333446666666666555444 4455555 56666666666655544444443 56
Q ss_pred CCEEECcCCCCcccccccc----cCCC-CCCCEEeCcCcccccccchhhhccccccC-CCCccEEEccCCcCcccC----
Q 037651 81 LQLLDLSGNSFLEGQLSRN----LGTL-CNLQTLKLSLNQFRGEVSDFIDGLSECIN-SSSLARLELGYNQLTGNL---- 150 (750)
Q Consensus 81 L~~L~Ls~n~~~~~~~~~~----l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~-~~~L~~L~L~~n~l~~~~---- 150 (750)
|++|++++|. +++..+.. +..+ ++|++|++++|.+++..+..+...- .. .++|++|++++|.+++..
T Consensus 82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l--~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF--SNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH--TTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHH--HhCCCceeEEEccCCcCCHHHHHHH
Confidence 6666666665 33333332 2233 5566666666665555444333210 00 015566666666555322
Q ss_pred CccccCCC-CCcEEEccCCcccccCCccc----cCC-CCCCeeecccccCCcc----cchhccC-CCCCCEEEcccCcCc
Q 037651 151 PISLGYLK-NLRYLELWYNSFLGSIPPSI----GNL-TFLEELYLTSNQMNGK----FPESFGQ-LSAIRVLELSDNQWE 219 (750)
Q Consensus 151 ~~~l~~l~-~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~Ls~n~l~~~----~~~~l~~-l~~L~~L~L~~n~l~ 219 (750)
+..+..++ +|++|++++|++++..+..+ ... ++|++|++++|.+++. ++..+.. .++|++|++++|.++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 22233333 55555555555554443322 223 3555555555555532 2333333 235555555555554
Q ss_pred cccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEeccccCCCCC-------ChhhccCCcccEEEcCCC
Q 037651 220 GFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKF-------PTWLRNQTELTTLVLNGA 292 (750)
Q Consensus 220 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------p~~l~~~~~L~~L~L~~n 292 (750)
+.... .+ ...+....+|+.|++++|.+.... +..+..+++|++|++++|
T Consensus 239 ~~~~~-~l-----------------------~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 239 GPSLE-NL-----------------------KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp CCCHH-HH-----------------------HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred cHHHH-HH-----------------------HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 42111 00 111222334455555555433222 234456677777777777
Q ss_pred CcCCCcChHHH
Q 037651 293 SISDTLPSWFW 303 (750)
Q Consensus 293 ~i~~~~~~~~~ 303 (750)
.+.+..+..+.
T Consensus 295 ~l~~~~~~~~~ 305 (362)
T 3goz_A 295 EIHPSHSIPIS 305 (362)
T ss_dssp BCCGGGCHHHH
T ss_pred cCCCcchHHHH
Confidence 77766554443
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5.7e-21 Score=197.02 Aligned_cols=191 Identities=27% Similarity=0.378 Sum_probs=87.7
Q ss_pred CCCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEE
Q 037651 5 LPSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLL 84 (750)
Q Consensus 5 l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 84 (750)
+++|++|+++++.+..++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. + .+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~l~---~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccCch---hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEE
Confidence 344555555555554442 23444555555555555543322 45555555555555554432 2 34455555555
Q ss_pred ECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEE
Q 037651 85 DLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLE 164 (750)
Q Consensus 85 ~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 164 (750)
++++|. +.+ ++ .+..+++|++|++++|.+++..+ ++.++ +|++|++++|.+++ ++. +..+++|++|+
T Consensus 113 ~l~~n~-l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~------~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 113 DLTSTQ-ITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLT------NLQYLSIGNAQVSD-LTP-LANLSKLTTLK 179 (308)
T ss_dssp ECTTSC-CCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCT------TCCEEECCSSCCCC-CGG-GTTCTTCCEEE
T ss_pred ECCCCC-CCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCC------CccEEEccCCcCCC-Chh-hcCCCCCCEEE
Confidence 555554 221 12 24455555555555555444322 33333 45555555555443 222 44455555555
Q ss_pred ccCCcccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCc
Q 037651 165 LWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWE 219 (750)
Q Consensus 165 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 219 (750)
+++|.+.+..+ +..+++|++|++++|++++.. .+..+++|+.|++++|+++
T Consensus 180 l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 55554443221 444455555555555554322 1444455555555555443
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.3e-21 Score=194.20 Aligned_cols=205 Identities=21% Similarity=0.223 Sum_probs=170.7
Q ss_pred CCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCC-CcccCCcccCCCCCCCEEECcC-CCCcccc
Q 037651 18 LPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSND-LQGDIPDGFASLNSLQLLDLSG-NSFLEGQ 95 (750)
Q Consensus 18 l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~~~~~~ 95 (750)
++.+|. -.++|++|++++|.+++..+..|.++++|++|++++|+ +++..+.+|.++++|++|++++ |. +...
T Consensus 23 l~~ip~-----~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i 96 (239)
T 2xwt_C 23 IQRIPS-----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYI 96 (239)
T ss_dssp CSSCCC-----CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEE
T ss_pred ccccCC-----CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEc
Confidence 666654 23589999999999998877789999999999999997 8877777899999999999998 88 5555
Q ss_pred cccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCcc---EEEccCC-cCcccCCccccCCCCCc-EEEccCCcc
Q 037651 96 LSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLA---RLELGYN-QLTGNLPISLGYLKNLR-YLELWYNSF 170 (750)
Q Consensus 96 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l 170 (750)
.+..|..+++|++|++++|.+++ +|. +..++ +|+ +|++++| .+++..+..|.++++|+ +|++++|++
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~------~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY------STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC------BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc------ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 56778999999999999999987 444 66555 666 9999999 99876677799999999 999999999
Q ss_pred cccCCccccCCCCCCeeeccccc-CCcccchhccCC-CCCCEEEcccCcCccccChhhhcCCCCCCEEecccC
Q 037651 171 LGSIPPSIGNLTFLEELYLTSNQ-MNGKFPESFGQL-SAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKT 241 (750)
Q Consensus 171 ~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~ 241 (750)
+...+..+.. ++|++|++++|+ +++..+..+.++ ++|+.|++++|++++ ++.. .+++|+.|++.++
T Consensus 169 ~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 169 TSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT---TCTTCSEEECTTC
T ss_pred cccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh---HhccCceeeccCc
Confidence 8444444444 899999999995 987667788999 999999999999986 4442 6788999998874
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=8.8e-21 Score=189.67 Aligned_cols=181 Identities=27% Similarity=0.295 Sum_probs=160.5
Q ss_pred CCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEe
Q 037651 31 TSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLK 110 (750)
Q Consensus 31 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~ 110 (750)
...++++++++.++. +|..+. +++++|+|++|.+.+..+.+|.++++|++|++++|. +.+..+..|..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEE
Confidence 457899999999974 555554 689999999999998888899999999999999999 6666777789999999999
Q ss_pred CcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeecc
Q 037651 111 LSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLT 190 (750)
Q Consensus 111 Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 190 (750)
+++|.+++..+..+..++ +|++|++++|++++..+..+..+++|++|++++|++.+..+..|..+++|++|+++
T Consensus 90 L~~n~l~~~~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLT------QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp CTTSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCcccccChhHhcccC------CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 999999988888888777 99999999999997666678999999999999999997777789999999999999
Q ss_pred cccCCcccchhccCCCCCCEEEcccCcCccc
Q 037651 191 SNQMNGKFPESFGQLSAIRVLELSDNQWEGF 221 (750)
Q Consensus 191 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 221 (750)
+|++++..+..+..+++|+.|++++|++.+.
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999987777899999999999999998764
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1e-20 Score=199.17 Aligned_cols=244 Identities=18% Similarity=0.158 Sum_probs=168.8
Q ss_pred cEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccC-ccccCCCCCCE-EeC
Q 037651 354 TKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIP-QFLKNISSLYI-LDM 431 (750)
Q Consensus 354 ~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L~L 431 (750)
++++.++++++ .+|..+ .+++++|++++|+++.+.+.+|.++++|++|+|++|++.+.+| ..|.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45677777776 677655 3567888888888876666678888888888888888765554 46777777665 555
Q ss_pred CCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCC-CcccccCChhhhhcC-CCCCEEEccCccc
Q 037651 432 TKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGE-NQLSGNIPAWIGESM-PSLSILRLRSNHF 509 (750)
Q Consensus 432 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~p~~~~~~l-~~L~~L~Ls~n~l 509 (750)
+.|+++...|..|..+++|++|++++|+++...+..+....++..|++.+ +++. .+|...+..+ ..++.|++++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccc
Confidence 66788877777788888888888888888766666666667777888865 4554 5665443334 3577888888888
Q ss_pred eeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccC
Q 037651 510 NGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHL 589 (750)
Q Consensus 510 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L 589 (750)
+ .+|.......+|+.|++++|+..+.+|. ..|+++++|
T Consensus 167 ~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~-----------------------------------------~~f~~l~~L 204 (350)
T 4ay9_X 167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPN-----------------------------------------DVFHGASGP 204 (350)
T ss_dssp C-EECTTSSTTEEEEEEECTTCTTCCCCCT-----------------------------------------TTTTTEECC
T ss_pred c-CCChhhccccchhHHhhccCCcccCCCH-----------------------------------------HHhccCccc
Confidence 7 5555555667788888876444345443 236677888
Q ss_pred CeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcce
Q 037651 590 GTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLS 648 (750)
Q Consensus 590 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 648 (750)
++|||++|+++...+..+ ..|+.|.+.++.-...+|. +..+++|+.++++++.-+
T Consensus 205 ~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~~c 259 (350)
T 4ay9_X 205 VILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPSHC 259 (350)
T ss_dssp SEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHHHH
T ss_pred chhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCccc
Confidence 888888888884444344 4455555555554456774 778888888888876443
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=3e-20 Score=180.06 Aligned_cols=132 Identities=22% Similarity=0.261 Sum_probs=53.9
Q ss_pred CCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecC
Q 037651 401 QLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLG 480 (750)
Q Consensus 401 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 480 (750)
+|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 34444444444443333334444444444444444443322333344444444444444443333334444444444444
Q ss_pred CCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcC
Q 037651 481 ENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 533 (750)
Q Consensus 481 ~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 533 (750)
+|+++ .+|...+..+++|+.|++++|++++..+..+..+++|+.|++++|.+
T Consensus 109 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 109 TNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 44444 22222222244444444444444433333334444444444444433
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=5.6e-20 Score=178.17 Aligned_cols=163 Identities=19% Similarity=0.197 Sum_probs=82.2
Q ss_pred CCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEE
Q 037651 350 SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYIL 429 (750)
Q Consensus 350 ~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 429 (750)
.+++++|++++|.++ .++...+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 345555555555555 3333333335555555555555554444445555555555555555554444444555555555
Q ss_pred eCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccc
Q 037651 430 DMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHF 509 (750)
Q Consensus 430 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l 509 (750)
++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+. +++|+.|+++.|++
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKH 177 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC--------TTTTHHHHHHHHHC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC--------CCCHHHHHHHHHhC
Confidence 5555555544334444555555555555555544444445555555555555544321 33444555555555
Q ss_pred eeecCccccCCC
Q 037651 510 NGTIPSELCKLS 521 (750)
Q Consensus 510 ~~~~p~~l~~l~ 521 (750)
+|.+|.+++.++
T Consensus 178 ~g~ip~~~~~l~ 189 (208)
T 2o6s_A 178 SGVVRNSAGSVA 189 (208)
T ss_dssp TTTBBCTTSSBC
T ss_pred CceeeccCcccc
Confidence 555554444443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=4.5e-20 Score=194.20 Aligned_cols=198 Identities=18% Similarity=0.094 Sum_probs=159.4
Q ss_pred eEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCC-cCCcCCCCCCe-EECccCc
Q 037651 334 SVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIP-QSVGNLKQLLT-LVISNNN 411 (750)
Q Consensus 334 ~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~-L~L~~n~ 411 (750)
+++.++++++..+...++++++|++++|+++ .+|...+..+++|++|++++|++.+.+| .+|.+++++++ +.+..|+
T Consensus 13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 4555555555432223568999999999998 8888777779999999999999876555 57888988876 5667789
Q ss_pred cccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccC-CcCcCCCCccccCCC-CCCEEecCCCcccccCC
Q 037651 412 LSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSN-NHLSGEIPPSLKNCS-LMDSLDLGENQLSGNIP 489 (750)
Q Consensus 412 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~p 489 (750)
+....|..|..+++|++|++++|++....+..+....++..+++.+ +++....+..|..+. .++.|++++|+++ .+|
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~ 170 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIH 170 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EEC
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCC
Confidence 9988889999999999999999999966666677778888999976 567655566777764 6889999999998 788
Q ss_pred hhhhhcCCCCCEEEccC-ccceeecC-ccccCCCCCcEEEcccCcCCC
Q 037651 490 AWIGESMPSLSILRLRS-NHFNGTIP-SELCKLSALHILDLSHNNLSG 535 (750)
Q Consensus 490 ~~~~~~l~~L~~L~Ls~-n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~ 535 (750)
..++. .++|+.|++++ |.++ .+| ..|..+++|++||+++|+++.
T Consensus 171 ~~~f~-~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 171 NSAFN-GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp TTSST-TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC
T ss_pred hhhcc-ccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc
Confidence 88776 78899999986 5555 665 467999999999999999984
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=6.7e-20 Score=202.63 Aligned_cols=196 Identities=28% Similarity=0.376 Sum_probs=161.7
Q ss_pred CCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEc
Q 037651 376 PFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVL 455 (750)
Q Consensus 376 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 455 (750)
.+|+.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 489999999999987 66655 478999999999998 566 457899999999999996 777 654 9999999
Q ss_pred cCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCC
Q 037651 456 SNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSG 535 (750)
Q Consensus 456 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 535 (750)
++|++++ +|. .+++|+.|++++|+++ .+|. .+++|+.|++++|++++ +|. +. ++|+.|+|++|+++
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 9999996 666 6899999999999998 4886 38899999999999995 777 65 89999999999998
Q ss_pred cCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcE
Q 037651 536 PIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLES 615 (750)
Q Consensus 536 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 615 (750)
.+|. +.. .| ....+.|+.|+|++|+++ .+|..+..+++|+.
T Consensus 194 ~lp~-~~~--~L-----------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 194 SLPA-VPV--RN-----------------------------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234 (571)
T ss_dssp SCCC-CC---------------------------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEE
T ss_pred chhh-HHH--hh-----------------------------------hcccccceEEecCCCcce-ecCHHHhcCCCCCE
Confidence 5665 321 11 122344589999999998 68888888999999
Q ss_pred EEccCCccCcCCCccccCCC
Q 037651 616 LDLSRNKLSGSIPPSMVSIR 635 (750)
Q Consensus 616 L~Ls~N~l~~~~p~~l~~l~ 635 (750)
|+|++|++++.+|..+..++
T Consensus 235 L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 235 IILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp EECCSSSCCHHHHHHHHHHH
T ss_pred EEeeCCcCCCcCHHHHHHhh
Confidence 99999999999998877654
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=3.6e-19 Score=173.66 Aligned_cols=157 Identities=21% Similarity=0.208 Sum_probs=122.1
Q ss_pred CEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEccc
Q 037651 451 RFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSH 530 (750)
Q Consensus 451 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 530 (750)
+.+++++|.++ .+|..+. ..+++|++++|++++..|...+..+++|+.|++++|++++..+..|..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46677777766 3554442 34577888888777544544444588888888888888877777888888899999999
Q ss_pred CcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCC
Q 037651 531 NNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKL 610 (750)
Q Consensus 531 n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 610 (750)
|++++..|. .|..+++|++|+|++|++++..|..|..+
T Consensus 91 N~l~~~~~~------------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 128 (220)
T 2v70_A 91 NRLENVQHK------------------------------------------MFKGLESLKTLMLRSNRITCVGNDSFIGL 128 (220)
T ss_dssp SCCCCCCGG------------------------------------------GGTTCSSCCEEECTTSCCCCBCTTSSTTC
T ss_pred CccCccCHh------------------------------------------HhcCCcCCCEEECCCCcCCeECHhHcCCC
Confidence 888754332 46677888899999999988888889999
Q ss_pred ccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceecCC
Q 037651 611 EWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGEIP 652 (750)
Q Consensus 611 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip 652 (750)
++|+.|+|++|++++..|..+..+++|++|++++|++.|..+
T Consensus 129 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999999999999998888889999999999999999887654
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=3.2e-19 Score=197.22 Aligned_cols=189 Identities=26% Similarity=0.414 Sum_probs=148.1
Q ss_pred CCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCc
Q 037651 308 TLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNS 387 (750)
Q Consensus 308 ~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~ 387 (750)
+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l----------------------~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~ 111 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL----------------------PPQITVLEITQNALI-SLP----ELPASLEYLDACDNR 111 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC----------------------CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSC
T ss_pred CccEEEeCCCCCCc-cCHhH----------------------cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCC
Confidence 67777777777764 44322 457888888888887 677 236788888888888
Q ss_pred CcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCcc
Q 037651 388 LNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPS 467 (750)
Q Consensus 388 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 467 (750)
+++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|++++ +|. .+++|+.|++++|++++ +|.
T Consensus 112 l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~- 177 (571)
T 3cvr_A 112 LST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE- 177 (571)
T ss_dssp CSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-
T ss_pred CCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-
Confidence 886 565 544 88999999998886 555 67889999999999885 665 56889999999999986 666
Q ss_pred ccCCCCCCEEecCCCcccccCChhhhhcCCCC-------CEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCcc
Q 037651 468 LKNCSLMDSLDLGENQLSGNIPAWIGESMPSL-------SILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHC 540 (750)
Q Consensus 468 ~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L-------~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 540 (750)
|. ++|+.|+|++|+++ .+|. +. .+| +.|++++|+++ .+|..+..+++|+.|+|++|++++.+|..
T Consensus 178 l~--~~L~~L~Ls~N~L~-~lp~-~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 178 LP--ESLEALDVSTNLLE-SLPA-VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CC--TTCCEEECCSSCCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred hh--CCCCEEECcCCCCC-chhh-HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 65 88999999999998 7887 43 266 99999999998 78888888999999999999999999988
Q ss_pred cccccc
Q 037651 541 VGDFSA 546 (750)
Q Consensus 541 ~~~l~~ 546 (750)
+.+++.
T Consensus 250 l~~l~~ 255 (571)
T 3cvr_A 250 LSQQTA 255 (571)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 776654
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.4e-18 Score=167.82 Aligned_cols=154 Identities=22% Similarity=0.275 Sum_probs=113.7
Q ss_pred CEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEccc
Q 037651 451 RFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSH 530 (750)
Q Consensus 451 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 530 (750)
+.++++++.++ .+|..+. ++|+.|++++|++. .++...+..+++|+.|++++|++++..|..|..+++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 45666666665 4454433 56777777777776 34443334477777888888877777777888888888888888
Q ss_pred CcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCC
Q 037651 531 NNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKL 610 (750)
Q Consensus 531 n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 610 (750)
|++++. |. ..|.++++|++|+|++|++++..|..|..+
T Consensus 90 N~l~~l-~~-----------------------------------------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l 127 (220)
T 2v9t_B 90 NKITEL-PK-----------------------------------------SLFEGLFSLQLLLLNANKINCLRVDAFQDL 127 (220)
T ss_dssp SCCCCC-CT-----------------------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CcCCcc-CH-----------------------------------------hHccCCCCCCEEECCCCCCCEeCHHHcCCC
Confidence 888732 22 135667788888888888888888888888
Q ss_pred ccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceec
Q 037651 611 EWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGE 650 (750)
Q Consensus 611 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ 650 (750)
++|+.|+|++|++++..|..+..+++|++|++++|++.+.
T Consensus 128 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 8888888888888887777788888888899998888764
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.8e-18 Score=176.60 Aligned_cols=185 Identities=27% Similarity=0.332 Sum_probs=133.4
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCC
Q 037651 12 HLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSF 91 (750)
Q Consensus 12 ~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~ 91 (750)
.+....+.+.. ....+++|++|++++|.+.+. + .+..+++|++|++++|++++..+ +.++++|++|++++|.+
T Consensus 30 ~l~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 30 NLKKKSVTDAV---TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HTTCSCTTSEE---CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HhcCCCccccc---chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 44455555442 345677888888888888654 3 37778888888888888875444 78888888888888873
Q ss_pred cccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCccc
Q 037651 92 LEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFL 171 (750)
Q Consensus 92 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 171 (750)
.+ + ..+..+++|++|++++|++++. ..+..++ +|++|++++|++++. ..+..+++|++|++++|++.
T Consensus 103 -~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 103 -KD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLP------QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp -CC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCT------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred -CC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCC------CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 32 2 3478888888888888887764 3455554 788888888888753 56778888888888888877
Q ss_pred ccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCcc
Q 037651 172 GSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG 220 (750)
Q Consensus 172 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 220 (750)
+..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|++..
T Consensus 170 ~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 170 DIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred cchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 5544 7778888888888888875 33 37778888888888887654
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.6e-18 Score=175.39 Aligned_cols=172 Identities=27% Similarity=0.319 Sum_probs=149.9
Q ss_pred CCCCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCE
Q 037651 4 KLPSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQL 83 (750)
Q Consensus 4 ~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 83 (750)
.+++|++|++++|.+.+++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++ .+.++++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~---~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hcCcccEEEccCCCcccCh---hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 4678999999999999885 37789999999999999987655 9999999999999999985 33 4999999999
Q ss_pred EECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEE
Q 037651 84 LDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYL 163 (750)
Q Consensus 84 L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 163 (750)
|++++|.+ .. + ..+..+++|++|++++|++++. ..+..++ +|++|++++|.+++..+ +..+++|++|
T Consensus 117 L~L~~n~i-~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~------~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 117 LSLEHNGI-SD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT------KLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp EECTTSCC-CC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCT------TCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred EECCCCcC-CC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCC------CCCEEEccCCccccchh--hcCCCccCEE
Confidence 99999994 43 2 4688999999999999999876 4566666 99999999999996544 8999999999
Q ss_pred EccCCcccccCCccccCCCCCCeeecccccCCcc
Q 037651 164 ELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGK 197 (750)
Q Consensus 164 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 197 (750)
++++|.+++ ++ .+..+++|+.|++++|+++..
T Consensus 184 ~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 184 YLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred ECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 999999985 44 489999999999999999853
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=5.5e-18 Score=165.25 Aligned_cols=138 Identities=20% Similarity=0.258 Sum_probs=89.0
Q ss_pred CCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEE
Q 037651 350 SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYIL 429 (750)
Q Consensus 350 ~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 429 (750)
...+++|++++|.+++..+...+..+++|++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 34566677777766644444444556666677776666666666666666666666666666666655566666666666
Q ss_pred eCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCccccc
Q 037651 430 DMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGN 487 (750)
Q Consensus 430 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 487 (750)
++++|++++..|..|..+++|++|++++|++++..|..|..+++|+.|++++|++.+.
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 6666666665566666666666666666666665566666666666666666666543
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.3e-18 Score=181.91 Aligned_cols=176 Identities=25% Similarity=0.310 Sum_probs=102.7
Q ss_pred cEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCc-CCCCCCeEECccCccccccCccccCCCCCCEEeCC
Q 037651 354 TKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVG-NLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMT 432 (750)
Q Consensus 354 ~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 432 (750)
+.++++++.++ .+|..+ .+.++.|++++|++++..+..+. .+++|++|++++|++++..+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34555555554 455443 23455666666666655555554 56666666666666665555556666666666666
Q ss_pred CCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhh---hcCCCCCEEEccCccc
Q 037651 433 KNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIG---ESMPSLSILRLRSNHF 509 (750)
Q Consensus 433 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~---~~l~~L~~L~Ls~n~l 509 (750)
+|++++..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|+++ .+|..++ ..+++|+.|+|++|++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCC
Confidence 66666555555666666666666666666555666666666666666666665 4555543 2356666666666666
Q ss_pred eeecCccccCCCC--CcEEEcccCcCC
Q 037651 510 NGTIPSELCKLSA--LHILDLSHNNLS 534 (750)
Q Consensus 510 ~~~~p~~l~~l~~--L~~L~Ls~n~l~ 534 (750)
++..+..+..++. ++.|+|++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 6433344555554 356666666654
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.8e-18 Score=181.20 Aligned_cols=177 Identities=25% Similarity=0.167 Sum_probs=117.8
Q ss_pred cEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccC-CCCCCCEEECcCCCCcccccccccCCCCCCCEEeCc
Q 037651 34 QVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFA-SLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLS 112 (750)
Q Consensus 34 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls 112 (750)
++++++++.++. +|..+. +.+++|+|++|++++..+..|. ++++|++|+|++|+ +....+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECC
Confidence 466666666653 344332 3466677777777665555565 66777777777776 444444556677777777777
Q ss_pred CcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccc---cCCCCCCeeec
Q 037651 113 LNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSI---GNLTFLEELYL 189 (750)
Q Consensus 113 ~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L 189 (750)
+|++++..+..|..++ +|++|+|++|++++..|..|.++++|++|+|++|++++..+..+ ..+++|++|+|
T Consensus 97 ~N~l~~~~~~~~~~l~------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQ------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp SSCCCEECTTTTTTCT------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred CCcCCcCCHHHhCCCc------CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 7777666666666665 77777777777776666777777777777777777775433334 56788888888
Q ss_pred ccccCCcccchhccCCCC--CCEEEcccCcCcc
Q 037651 190 TSNQMNGKFPESFGQLSA--IRVLELSDNQWEG 220 (750)
Q Consensus 190 s~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~ 220 (750)
++|++++..+..+..++. ++.|++++|++..
T Consensus 171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 888887655566777776 4778888887764
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=9.4e-18 Score=163.57 Aligned_cols=133 Identities=23% Similarity=0.274 Sum_probs=67.2
Q ss_pred CCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCC
Q 037651 56 NLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSS 135 (750)
Q Consensus 56 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~ 135 (750)
+|++|++++|.+++..+..|.++++|++|+|++|. +....|..|.++++|++|++++|.++...+..|..++ +
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~------~ 105 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF------S 105 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT------T
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC------C
Confidence 44444444444443333344444444444444444 3333344444444444444444444444444444443 5
Q ss_pred ccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeecccccCC
Q 037651 136 LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMN 195 (750)
Q Consensus 136 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 195 (750)
|++|+|++|++++..|..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+.
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555555555555444555555556666666666655555555556666666666666554
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.3e-17 Score=163.83 Aligned_cols=103 Identities=23% Similarity=0.349 Sum_probs=48.3
Q ss_pred EEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCc
Q 037651 428 ILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSN 507 (750)
Q Consensus 428 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n 507 (750)
.++.++++++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++. .+|...+..+++|+.|+|++|
T Consensus 23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCC
Confidence 4444444444 3443322 45555555555555444555555555555555555554 344333333444444444444
Q ss_pred cceeecCccccCCCCCcEEEcccCcCC
Q 037651 508 HFNGTIPSELCKLSALHILDLSHNNLS 534 (750)
Q Consensus 508 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 534 (750)
++++..+..+..+++|+.|+|++|+++
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT 125 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc
Confidence 444333333444444444444444443
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.4e-18 Score=194.30 Aligned_cols=188 Identities=26% Similarity=0.321 Sum_probs=140.1
Q ss_pred CEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcC
Q 037651 9 VELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSG 88 (750)
Q Consensus 9 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 88 (750)
..+.+..+.+.+.. ....+++|+.|++++|.+... + .+..+++|++|+|++|.+.+..| +..+++|++|+|++
T Consensus 24 ~~l~l~~~~i~~~~---~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 24 IKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHTTCSCTTSEE---CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHhccCCCccccc---chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 33455566666553 345678888888888888653 3 47888888888888888886544 78888888888888
Q ss_pred CCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCC
Q 037651 89 NSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYN 168 (750)
Q Consensus 89 n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 168 (750)
|.+ .+ + ..+..+++|++|+|++|.+.+. ..+..++ +|+.|+|++|.+++. ..+..+++|+.|+|++|
T Consensus 97 N~l-~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~------~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 97 NKI-KD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLP------QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp SCC-CC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCT------TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred CCC-CC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCC------ccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence 874 32 2 3678888888888888888764 3355555 888888888888754 56788888888888888
Q ss_pred cccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCcc
Q 037651 169 SFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEG 220 (750)
Q Consensus 169 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 220 (750)
.+.+..| +..+++|++|+|++|++++. +.+..+++|+.|++++|++.+
T Consensus 164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 164 QISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred cCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 8876655 78888888888888888753 357888888888888888765
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.1e-17 Score=187.03 Aligned_cols=173 Identities=27% Similarity=0.303 Sum_probs=151.5
Q ss_pred CCCCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCE
Q 037651 4 KLPSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQL 83 (750)
Q Consensus 4 ~l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 83 (750)
.+++|+.|++++|.+..++ .+..+++|+.|+|++|.+++..+ +..+++|++|+|++|.+.+ +| .+..+++|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 4788999999999999885 47789999999999999987655 9999999999999999985 34 7999999999
Q ss_pred EECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEE
Q 037651 84 LDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYL 163 (750)
Q Consensus 84 L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 163 (750)
|+|++|.+ .. + ..+..+++|+.|+|++|.+++. ..+..++ +|+.|+|++|.+.+..| +..+++|+.|
T Consensus 114 L~Ls~N~l-~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~------~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 114 LSLEHNGI-SD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT------KLDTLSLEDNQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp EECTTSCC-CC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCT------TCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred EEecCCCC-CC-C-ccccCCCccCEEECCCCccCCc--hhhcccC------CCCEEECcCCcCCCchh--hccCCCCCEE
Confidence 99999994 43 3 4689999999999999999876 4566665 99999999999997655 8999999999
Q ss_pred EccCCcccccCCccccCCCCCCeeecccccCCccc
Q 037651 164 ELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKF 198 (750)
Q Consensus 164 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 198 (750)
+|++|.+.+. | .+..+++|+.|+|++|.+.+..
T Consensus 181 ~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 181 YLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCC
T ss_pred ECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCc
Confidence 9999999864 4 5899999999999999998643
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=7.6e-17 Score=158.26 Aligned_cols=155 Identities=27% Similarity=0.264 Sum_probs=106.2
Q ss_pred CcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCc
Q 037651 33 LQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLS 112 (750)
Q Consensus 33 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls 112 (750)
-+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|. +....+..|..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECC
Confidence 455666666664 3343332 566677777776666666666667777777777776 333333445667777777777
Q ss_pred CcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeecccc
Q 037651 113 LNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSN 192 (750)
Q Consensus 113 ~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 192 (750)
+|++++..+..+..++ +|++|++++|+++ .+|..+..+++|++|++++|++.+..+..+..+++|++|++++|
T Consensus 97 ~N~l~~l~~~~~~~l~------~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLV------HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp SSCCCCCCTTTTTTCT------TCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCcCCccChhHhCcch------hhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 7777766666666665 7777777777777 56777778888888888888887666667788888888888888
Q ss_pred cCCccc
Q 037651 193 QMNGKF 198 (750)
Q Consensus 193 ~l~~~~ 198 (750)
.+....
T Consensus 170 ~~~c~c 175 (229)
T 3e6j_A 170 PWDCEC 175 (229)
T ss_dssp CBCTTB
T ss_pred CccCCc
Confidence 877554
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.3e-17 Score=159.70 Aligned_cols=155 Identities=15% Similarity=0.259 Sum_probs=103.6
Q ss_pred cCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhcccccc
Q 037651 52 FNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECI 131 (750)
Q Consensus 52 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~ 131 (750)
..+++|++|++++|.+. .+| .+..+++|++|++++|.+ . .+..+..+++|++|++++|.+++..+..++.++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~-~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--- 112 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA-T--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT--- 112 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC-S--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT---
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC-C--cchhhhcCCCCCEEEeECCccCcccChhhcCCC---
Confidence 55667777777777776 444 567777777777777752 2 233567777777777777777765566666555
Q ss_pred CCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeecccccCCcccchhccCCCCCCEE
Q 037651 132 NSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQLSAIRVL 211 (750)
Q Consensus 132 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 211 (750)
+|++|++++|.+++..|..++.+++|++|++++|...+.+| .+..+++|++|++++|++++ ++ .+..+++|++|
T Consensus 113 ---~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 113 ---SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL 186 (197)
T ss_dssp ---TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred ---CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence 77777777777776666677777777777777776333444 47777777777777777774 33 56777777777
Q ss_pred EcccCcCcc
Q 037651 212 ELSDNQWEG 220 (750)
Q Consensus 212 ~L~~n~l~~ 220 (750)
++++|++.+
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 777777643
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.6e-18 Score=199.11 Aligned_cols=229 Identities=22% Similarity=0.212 Sum_probs=123.1
Q ss_pred CCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEe
Q 037651 351 SNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILD 430 (750)
Q Consensus 351 ~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 430 (750)
+.++.|++.+|.+.. ++. ..|+.++|+.+.+. .++++.|.+. ..+..+..++.|+.|+
T Consensus 173 ~~~~~l~L~~n~~~~-~~~------~~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~ 230 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQ------ALLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALD 230 (727)
T ss_dssp -----------------------------------------------------------------------CCCCCCEEE
T ss_pred CccceEEeeCCCCCc-chh------hHhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEE
Confidence 456777777776652 332 22445555555443 2344455555 5677888899999999
Q ss_pred CCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccce
Q 037651 431 MTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFN 510 (750)
Q Consensus 431 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~ 510 (750)
|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|+++ .+|..+.. +++|++|+|++|.++
T Consensus 231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-CFQLKYFYFFDNMVT 306 (727)
T ss_dssp CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG-GTTCSEEECCSSCCC
T ss_pred CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC-CCCCCEEECCCCCCC
Confidence 9999988 77777778999999999999999 88888999999999999999998 88988875 999999999999997
Q ss_pred eecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCC
Q 037651 511 GTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLG 590 (750)
Q Consensus 511 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~ 590 (750)
.+|..|+.+++|+.|+|++|.+++.+|..+..+.. .+.
T Consensus 307 -~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-----------------------------------------~~~ 344 (727)
T 4b8c_D 307 -TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV-----------------------------------------TGL 344 (727)
T ss_dssp -CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH-----------------------------------------HHH
T ss_pred -ccChhhhcCCCccEEeCCCCccCCCChHHHhhcch-----------------------------------------hhh
Confidence 88888999999999999999999887765432211 112
Q ss_pred eEeccCCcCCCCcccccCCCccCcEEEccCC--------ccCcCCCccccCCCCCCeEECcCCcceecCCC
Q 037651 591 TLNLSGNQLVGKIPTQIGKLEWLESLDLSRN--------KLSGSIPPSMVSIRFLSFLNLSFNNLSGEIPT 653 (750)
Q Consensus 591 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ip~ 653 (750)
.++|++|.+++.+|.. |+.|++++| .+.+..+..+..+..+....+++|-+++....
T Consensus 345 ~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~~ 409 (727)
T 4b8c_D 345 IFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYAT 409 (727)
T ss_dssp HHHHHHCCCCCCCCCC-----------------------------------------------CCCGGGCC
T ss_pred HHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccccccCc
Confidence 4789999999888864 456677777 44555555566677778888999988765443
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=3.1e-17 Score=157.17 Aligned_cols=155 Identities=21% Similarity=0.333 Sum_probs=128.6
Q ss_pred CCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCC
Q 037651 27 SLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNL 106 (750)
Q Consensus 27 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L 106 (750)
...+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|. +++..+..++.+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCc-cCcccChhhcCCCCC
Confidence 356788999999999997 445 5889999999999999776 33478899999999999998 666667889999999
Q ss_pred CEEeCcCcccccccchhhhccccccCCCCccEEEccCCc-CcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCC
Q 037651 107 QTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQ-LTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLE 185 (750)
Q Consensus 107 ~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 185 (750)
++|++++|.+++..+..++.++ +|++|++++|. ++ .+| .+..+++|++|++++|.+.+ ++ .+..+++|+
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~------~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~ 184 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLP------KVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLN 184 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCS------SCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCC
T ss_pred CEEEecCCccCcHhHHHHhhCC------CCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCC
Confidence 9999999999988888888777 99999999998 65 555 68899999999999999885 34 688999999
Q ss_pred eeecccccCCc
Q 037651 186 ELYLTSNQMNG 196 (750)
Q Consensus 186 ~L~Ls~n~l~~ 196 (750)
+|++++|++.+
T Consensus 185 ~L~l~~N~i~~ 195 (197)
T 4ezg_A 185 QLYAFSQTIGG 195 (197)
T ss_dssp EEEECBC----
T ss_pred EEEeeCcccCC
Confidence 99999999864
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=2e-19 Score=200.09 Aligned_cols=189 Identities=25% Similarity=0.238 Sum_probs=101.0
Q ss_pred CCCCCCeEECccCccccccCccccCCCCCCEEeCCCCc-------------cceeCCccccCCCCCCEEE-ccCCcCcCC
Q 037651 398 NLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNN-------------FSGEIPESIGSLLTIRFLV-LSNNHLSGE 463 (750)
Q Consensus 398 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~ 463 (750)
.++.|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 3556666666666665 556666666666666665554 2233334444444444444 3332221
Q ss_pred CCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccc
Q 037651 464 IPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGD 543 (750)
Q Consensus 464 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 543 (750)
.|..+.+++|.+. .+| ...|+.|++++|++++ +|. ++.+++|+.|+|++|+++ .+|
T Consensus 424 ---------~L~~l~l~~n~i~-~l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp----- 479 (567)
T 1dce_A 424 ---------DLRSKFLLENSVL-KME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALP----- 479 (567)
T ss_dssp ---------HHHHHHHHHHHHH-HHH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCC-----
T ss_pred ---------hhhhhhhhccccc-ccC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccc-----
Confidence 1111112222222 111 1245666666666653 454 666666666666666655 333
Q ss_pred cccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCcc
Q 037651 544 FSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKL 623 (750)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 623 (750)
..++.+++|+.|+|++|++++ +| .++.+++|+.|+|++|++
T Consensus 480 -------------------------------------~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 480 -------------------------------------PALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp -------------------------------------GGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCC
T ss_pred -------------------------------------hhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCC
Confidence 234555556666666666664 45 566666666666666666
Q ss_pred CcCC-CccccCCCCCCeEECcCCcceecCC
Q 037651 624 SGSI-PPSMVSIRFLSFLNLSFNNLSGEIP 652 (750)
Q Consensus 624 ~~~~-p~~l~~l~~L~~l~ls~N~l~g~ip 652 (750)
++.+ |..+..+++|+.|++++|++++.+|
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 6554 6666666666666666666666544
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.4e-17 Score=165.47 Aligned_cols=170 Identities=23% Similarity=0.332 Sum_probs=104.8
Q ss_pred CCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEe
Q 037651 399 LKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLD 478 (750)
Q Consensus 399 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 478 (750)
+.++..+++++|.+++.. .+..+++|++|++++|.++ .++ .+..+++|+.|++++|++++..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 455666667777766432 4666777777777777776 344 46667777777777777764333 66777777777
Q ss_pred cCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCcccc
Q 037651 479 LGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQ 558 (750)
Q Consensus 479 L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~ 558 (750)
+++|+++ .+|.... ++|+.|++++|++++ ++ .+..+++|+.|++++|++++. |
T Consensus 92 L~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-------------------- 144 (263)
T 1xeu_A 92 VNRNRLK-NLNGIPS---ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-------------------- 144 (263)
T ss_dssp CCSSCCS-CCTTCCC---SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G--------------------
T ss_pred CCCCccC-CcCcccc---CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h--------------------
Confidence 7777766 3443221 566666666666663 22 466666666666666666531 1
Q ss_pred CceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcC
Q 037651 559 GSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGS 626 (750)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 626 (750)
.+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 145 -----------------------~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 -----------------------MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -----------------------GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -----------------------HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 244555666666666666644 4466666666666666666543
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.4e-17 Score=167.13 Aligned_cols=170 Identities=22% Similarity=0.312 Sum_probs=118.8
Q ss_pred CCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCE
Q 037651 29 NFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQT 108 (750)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 108 (750)
.+.+++.++++++.+++.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|. +.+. +. +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~-i~~~-~~-l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQ-ISDL-SP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-CCCC-GG-GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCc-cCCC-hh-hccCCCCCE
Confidence 4556667777777776443 46677777777777777773 44 57777777777777777 3333 33 777777777
Q ss_pred EeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeee
Q 037651 109 LKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELY 188 (750)
Q Consensus 109 L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 188 (750)
|++++|++++..+ +.. + +|++|++++|++++ + ..+..+++|++|++++|++++. + .+..+++|++|+
T Consensus 90 L~L~~N~l~~l~~--~~~-~------~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~ 156 (263)
T 1xeu_A 90 LSVNRNRLKNLNG--IPS-A------CLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLD 156 (263)
T ss_dssp EECCSSCCSCCTT--CCC-S------SCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEE
T ss_pred EECCCCccCCcCc--ccc-C------cccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEE
Confidence 7777777765322 111 2 78888888887774 3 3577788888888888887754 3 577788888888
Q ss_pred cccccCCcccchhccCCCCCCEEEcccCcCcc
Q 037651 189 LTSNQMNGKFPESFGQLSAIRVLELSDNQWEG 220 (750)
Q Consensus 189 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 220 (750)
+++|++++. ..+..+++|+.|++++|.+.+
T Consensus 157 L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 157 LHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 888888755 567778888888888887765
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=3.3e-19 Score=198.36 Aligned_cols=183 Identities=20% Similarity=0.219 Sum_probs=128.8
Q ss_pred cCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCc-------------CcCCCCccccCCCCCCEEe-cCCCcccc
Q 037651 421 KNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNH-------------LSGEIPPSLKNCSLMDSLD-LGENQLSG 486 (750)
Q Consensus 421 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~~~~ 486 (750)
..++.|+.|+|++|+++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45677888888888887 678778888888888876654 2333344444444444444 3333221
Q ss_pred cCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEe
Q 037651 487 NIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIK 566 (750)
Q Consensus 487 ~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 566 (750)
.|+.+.+++|.+.+. |. ..|+.|+|++|.+++ +|.
T Consensus 424 -----------~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~--------------------------- 458 (567)
T 1dce_A 424 -----------DLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH--------------------------- 458 (567)
T ss_dssp -----------HHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC---------------------------
T ss_pred -----------hhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC---------------------------
Confidence 233334445555532 21 258999999999985 342
Q ss_pred cceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCc
Q 037651 567 GTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNN 646 (750)
Q Consensus 567 ~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 646 (750)
++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|++++ +| .+..+++|++|++++|+
T Consensus 459 ----------------~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 459 ----------------LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp ----------------GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred ----------------ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCC
Confidence 667888999999999999 889999999999999999999997 78 89999999999999999
Q ss_pred ceecC-CCC-CCCCCcccccccCCC
Q 037651 647 LSGEI-PTA-NQFQTSLIRQFMRIP 669 (750)
Q Consensus 647 l~g~i-p~~-~~~~~~~~~~~~~n~ 669 (750)
+++.+ |.. ..+.........+|+
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 99986 643 223333333345554
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=8.7e-17 Score=153.11 Aligned_cols=69 Identities=25% Similarity=0.296 Sum_probs=36.9
Q ss_pred hhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceecC
Q 037651 583 LTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGEI 651 (750)
Q Consensus 583 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~i 651 (750)
|..+++|++|+|++|++++..|..|+.+++|+.|+|++|++++.+|..+..+++|++|++++|++.|.+
T Consensus 74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 334444555555555555544555555555555555555555555555555555555555555555543
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=5.1e-18 Score=194.91 Aligned_cols=178 Identities=21% Similarity=0.320 Sum_probs=74.0
Q ss_pred CCCceEECCCCCCCCCCCCCCCCCcEEEeecccccCC--------CCcchhccCCCCCEEecCCCcCcccCCcCCcCCCC
Q 037651 330 RFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSGP--------IPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQ 401 (750)
Q Consensus 330 ~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--------i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 401 (750)
+....+++..|.+.... ...++.++|+.|.+.+. ++...+..++.|+.|+|++|.+. .+|..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~~---~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEAN---QALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcch---hhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 34677888888876632 23455566666655421 22223333555666666666555 34444445555
Q ss_pred CCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCC
Q 037651 402 LLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGE 481 (750)
Q Consensus 402 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 481 (750)
|++|+|++|.++ .+|..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+|++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 666666666555 45555555556666666666555 45555555556666666665555 4455555555666666666
Q ss_pred CcccccCChhhhhcCCCCCEEEccCccceeecC
Q 037651 482 NQLSGNIPAWIGESMPSLSILRLRSNHFNGTIP 514 (750)
Q Consensus 482 n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p 514 (750)
|++++.+|..+......+..+++++|.+++.+|
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 655555554443211112234455555555544
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=5.2e-16 Score=147.71 Aligned_cols=132 Identities=23% Similarity=0.296 Sum_probs=103.8
Q ss_pred cEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCc-CCcCCCCCCeEECccCccccccCccccCCCCCCEEeCC
Q 037651 354 TKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQ-SVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMT 432 (750)
Q Consensus 354 ~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 432 (750)
+.+++++|.++ .+|..+. ++|++|++++|++.+..+. .|..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 56777777775 6666543 3678888888887766654 47778888888888888887778888888888888888
Q ss_pred CCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCC
Q 037651 433 KNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIP 489 (750)
Q Consensus 433 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 489 (750)
+|++++..+..|..+++|++|++++|++++..|..|..+++|++|++++|++.+..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 888887777778888888888888888888878888888888888888888876555
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=144.90 Aligned_cols=129 Identities=27% Similarity=0.316 Sum_probs=100.1
Q ss_pred CEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCCC
Q 037651 475 DSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDT 554 (750)
Q Consensus 475 ~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~ 554 (750)
+.+++++|.+. .+|..+ .++|++|++++|+++ .+|..+..+++|+.|+|++|++++..|.
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~--------------- 72 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQ--------------- 72 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTT---------------
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHh---------------
Confidence 46777777776 677654 357788888888877 6777788888888888888888754332
Q ss_pred ccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCC
Q 037651 555 EIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSI 634 (750)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 634 (750)
.|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+
T Consensus 73 ---------------------------~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l 125 (193)
T 2wfh_A 73 ---------------------------SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL 125 (193)
T ss_dssp ---------------------------TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred ---------------------------HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcC
Confidence 45667778888888888887777888888888888888888887666678888
Q ss_pred CCCCeEECcCCcceec
Q 037651 635 RFLSFLNLSFNNLSGE 650 (750)
Q Consensus 635 ~~L~~l~ls~N~l~g~ 650 (750)
++|++|++++|++.|.
T Consensus 126 ~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 126 SALSHLAIGANPLYCD 141 (193)
T ss_dssp TTCCEEECCSSCEECS
T ss_pred ccccEEEeCCCCeecC
Confidence 8888999998888764
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=8.7e-16 Score=159.92 Aligned_cols=240 Identities=14% Similarity=0.092 Sum_probs=143.5
Q ss_pred CCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcC--------CCCCCeEECccCccccccCcccc
Q 037651 350 SSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGN--------LKQLLTLVISNNNLSGGIPQFLK 421 (750)
Q Consensus 350 ~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~l~ 421 (750)
+++|+.|++++|++.. .... ...++.+..+.+..+. +.+.+|.+ +++|+++++.+ .++...+.+|.
T Consensus 48 l~~L~~LdLs~n~i~~-~~~~-~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKM-YSGK-AGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECC-EEES-SSSSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred hccCeEEecCcceeEE-ecCc-cccccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 4567777777776651 0000 0011222333333332 22345555 67777777766 66655566677
Q ss_pred CCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCc----CcCCCCccccCCCCCC-EEecCCCcccccCChh-----
Q 037651 422 NISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNH----LSGEIPPSLKNCSLMD-SLDLGENQLSGNIPAW----- 491 (750)
Q Consensus 422 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~-~L~L~~n~~~~~~p~~----- 491 (750)
+|++|+.+++++|.+....+.+|..+.++..+....+. .......+|.+|..|+ .+++.... .++..
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~ 198 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAG 198 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTT
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcc
Confidence 77777777777776665566666666666655554422 1222234455555555 33333211 11221
Q ss_pred ----------------------hhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCcc
Q 037651 492 ----------------------IGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKV 549 (750)
Q Consensus 492 ----------------------~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~ 549 (750)
+...+++|+.+++++|+++...+..|.++++|+.+++.+| ++ .|+.
T Consensus 199 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~---------- 266 (329)
T 3sb4_A 199 LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQ---------- 266 (329)
T ss_dssp CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECT----------
T ss_pred cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehH----------
Confidence 1123678888888888777555566778888888888776 44 2222
Q ss_pred CCCCCccccCceEEEEecceEeecccccccchhhhccccCC-eEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCC
Q 037651 550 KPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLG-TLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIP 628 (750)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 628 (750)
..|.++++|+ .+++.+ .++...+.+|.++++|+.+++++|+++..-+
T Consensus 267 -------------------------------~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 267 -------------------------------RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp -------------------------------TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred -------------------------------HHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 2467777888 888887 6665666788888888888888888887777
Q ss_pred ccccCCCCCCeEEC
Q 037651 629 PSMVSIRFLSFLNL 642 (750)
Q Consensus 629 ~~l~~l~~L~~l~l 642 (750)
..|.++++|+.++.
T Consensus 315 ~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 315 ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTCCCCEEEC
T ss_pred hhhcCCcchhhhcc
Confidence 78888888887753
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=2.9e-15 Score=140.68 Aligned_cols=133 Identities=24% Similarity=0.221 Sum_probs=103.8
Q ss_pred CCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCCC
Q 037651 474 MDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPPD 553 (750)
Q Consensus 474 L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~ 553 (750)
.+.+++++|++. .+|..+ .++|+.|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------- 70 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG-------------- 70 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT--------------
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh--------------
Confidence 467777777776 666544 46788888888888866666678888888888888888743332
Q ss_pred CccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccC
Q 037651 554 TEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVS 633 (750)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 633 (750)
.+..+++|++|++++|++++..+..++.+++|+.|++++|++++..+..+..
T Consensus 71 ----------------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 122 (177)
T 2o6r_A 71 ----------------------------VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122 (177)
T ss_dssp ----------------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ----------------------------HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcC
Confidence 3566778888999999988777777888899999999999998766666788
Q ss_pred CCCCCeEECcCCcceecCC
Q 037651 634 IRFLSFLNLSFNNLSGEIP 652 (750)
Q Consensus 634 l~~L~~l~ls~N~l~g~ip 652 (750)
+++|++|++++|++.|.+|
T Consensus 123 l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 123 LTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTCCEEECCSSCBCCCHH
T ss_pred CcccCEEEecCCCeeccCc
Confidence 8999999999998888765
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2e-15 Score=140.46 Aligned_cols=132 Identities=24% Similarity=0.213 Sum_probs=72.6
Q ss_pred CCCCEEeCcCCCCc-ccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCC
Q 037651 55 TNLLSLDLNSNDLQ-GDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINS 133 (750)
Q Consensus 55 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~ 133 (750)
++|++|++++|.+. +.+|..+..+++|++|++++|. +... ..+..+++|++|++++|.+++..|..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----- 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP----- 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-----
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-----
Confidence 44555555555554 3444444555555555555555 2222 3455555555555555555554455444444
Q ss_pred CCccEEEccCCcCccc-CCccccCCCCCcEEEccCCcccccCC---ccccCCCCCCeeecccccCC
Q 037651 134 SSLARLELGYNQLTGN-LPISLGYLKNLRYLELWYNSFLGSIP---PSIGNLTFLEELYLTSNQMN 195 (750)
Q Consensus 134 ~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~ 195 (750)
+|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 96 -~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 -NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp -TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred -CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 566666666665532 11456666666666666666664433 35666777777777776665
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2.4e-15 Score=139.98 Aligned_cols=132 Identities=26% Similarity=0.231 Sum_probs=80.3
Q ss_pred CCCcEEECCCCCCC-CCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEE
Q 037651 31 TSLQVLDLSNNGFN-STIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTL 109 (750)
Q Consensus 31 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 109 (750)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|. +.+.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEE
Confidence 56666666666665 45555566666666666666666644 556666666666666666 444355555556666666
Q ss_pred eCcCcccccccc-hhhhccccccCCCCccEEEccCCcCcccCC---ccccCCCCCcEEEccCCccc
Q 037651 110 KLSLNQFRGEVS-DFIDGLSECINSSSLARLELGYNQLTGNLP---ISLGYLKNLRYLELWYNSFL 171 (750)
Q Consensus 110 ~Ls~n~l~~~~~-~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~ 171 (750)
++++|.+++... ..+..++ +|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~------~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLE------CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCS------CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCC------CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 666666665422 4444444 66666666666664333 25666666666666666654
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=1.4e-15 Score=158.26 Aligned_cols=101 Identities=14% Similarity=0.060 Sum_probs=67.5
Q ss_pred CCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCC-eeecccccCCcccchhccCCCCCCEEE
Q 037651 134 SSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLE-ELYLTSNQMNGKFPESFGQLSAIRVLE 212 (750)
Q Consensus 134 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 212 (750)
++|+.++|++|+++...+..|.++++|+.+++.+| +..+.+.+|.++++|+ ++++.+ .++...+.+|.++++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 36777777777776555556777777777777766 5555566677777777 777766 56655556677777777777
Q ss_pred cccCcCccccChhhhcCCCCCCEEe
Q 037651 213 LSDNQWEGFITEAHLRNLTSLEELS 237 (750)
Q Consensus 213 L~~n~l~~~~~~~~l~~l~~L~~L~ 237 (750)
++.|.++. ++...|.++++|+.+.
T Consensus 304 l~~n~i~~-I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 304 ATGDKITT-LGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECSSCCCE-ECTTTTCTTCCCCEEE
T ss_pred eCCCccCc-cchhhhcCCcchhhhc
Confidence 76666665 4444667777776664
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=3.1e-15 Score=136.05 Aligned_cols=127 Identities=22% Similarity=0.220 Sum_probs=58.3
Q ss_pred CCCCEEeCcCCCCc-ccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCC
Q 037651 55 TNLLSLDLNSNDLQ-GDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINS 133 (750)
Q Consensus 55 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~ 133 (750)
++|++|++++|.+. +.+|..+..+++|++|++++|. +.+. ..++.+++|++|++++|.+++..|..+..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~----- 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP----- 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-----
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-----
Confidence 34444444444444 3444444445555555555554 2211 3344455555555555555444444444443
Q ss_pred CCccEEEccCCcCccc-CCccccCCCCCcEEEccCCcccccCC---ccccCCCCCCeeecc
Q 037651 134 SSLARLELGYNQLTGN-LPISLGYLKNLRYLELWYNSFLGSIP---PSIGNLTFLEELYLT 190 (750)
Q Consensus 134 ~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls 190 (750)
+|++|++++|.+++. .+..++.+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 89 -~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 -NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred -CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 455555555554431 22344445555555555555443332 234444455554443
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=3e-15 Score=136.16 Aligned_cols=127 Identities=24% Similarity=0.237 Sum_probs=83.8
Q ss_pred CCCcEEECCCCCCC-CCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEE
Q 037651 31 TSLQVLDLSNNGFN-STIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTL 109 (750)
Q Consensus 31 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 109 (750)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..++++++|++|++++|. +.+.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEE
Confidence 56677777777765 45666666777777777777776644 556677777777777776 444456666667777777
Q ss_pred eCcCcccccc-cchhhhccccccCCCCccEEEccCCcCcccCC---ccccCCCCCcEEEcc
Q 037651 110 KLSLNQFRGE-VSDFIDGLSECINSSSLARLELGYNQLTGNLP---ISLGYLKNLRYLELW 166 (750)
Q Consensus 110 ~Ls~n~l~~~-~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~ 166 (750)
++++|.+++. .+..++.++ +|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~------~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLE------NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCT------TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCC------CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777653 234555555 77777777777765444 356777777777765
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=1.6e-13 Score=146.64 Aligned_cols=331 Identities=9% Similarity=0.073 Sum_probs=159.3
Q ss_pred CccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhh
Q 037651 46 TIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFID 125 (750)
Q Consensus 46 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 125 (750)
+-..+|.++++|+.+.+..+ ++.+...+|.+|++|+.+++..+ .......+|.++.+|+.+.+..+ +......+|.
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 34456777777777777643 55455667777777777777654 22233445666777766665533 3333333443
Q ss_pred ccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeecccccCCcccchhccCC
Q 037651 126 GLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLTSNQMNGKFPESFGQL 205 (750)
Q Consensus 126 ~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 205 (750)
... +........ +......+|.++++|+.+.+.++. .......|.++++|+.+++..+ ++.....++.++
T Consensus 138 ~~~-------~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~ 207 (394)
T 4fs7_A 138 GCD-------FKEITIPEG-VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC 207 (394)
T ss_dssp TCC-------CSEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred ccc-------ccccccCcc-ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence 332 222222111 111233456666666666665442 3244455666666666666544 333334455555
Q ss_pred CCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCCccc
Q 037651 206 SAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQTELT 285 (750)
Q Consensus 206 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~ 285 (750)
..|+.+.+..+... +.. ......+|+.+.+.. . +.......+..+..++
T Consensus 208 ~~L~~i~~~~~~~~--i~~-~~~~~~~l~~i~ip~---------------------------~-~~~i~~~~f~~~~~l~ 256 (394)
T 4fs7_A 208 ILLENMEFPNSLYY--LGD-FALSKTGVKNIIIPD---------------------------S-FTELGKSVFYGCTDLE 256 (394)
T ss_dssp TTCCBCCCCTTCCE--ECT-TTTTTCCCCEEEECT---------------------------T-CCEECSSTTTTCSSCC
T ss_pred cccceeecCCCceE--eeh-hhcccCCCceEEECC---------------------------C-ceecccccccccccce
Confidence 56655555443321 111 122223444444332 1 1112233445555555
Q ss_pred EEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECCCCCCCCCCCCCCCCCcEEEeecccccC
Q 037651 286 TLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLSSNRFEGPLPLWSSNLTKLYLRDNLFSG 365 (750)
Q Consensus 286 ~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~ 365 (750)
.+.+..+... +....+.. ...++.+.....
T Consensus 257 ~~~~~~~~~~--i~~~~F~~--------------------------------------------~~~l~~~~~~~~---- 286 (394)
T 4fs7_A 257 SISIQNNKLR--IGGSLFYN--------------------------------------------CSGLKKVIYGSV---- 286 (394)
T ss_dssp EEEECCTTCE--ECSCTTTT--------------------------------------------CTTCCEEEECSS----
T ss_pred eEEcCCCcce--eecccccc--------------------------------------------ccccceeccCce----
Confidence 5555433211 00000000 223333333332
Q ss_pred CCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCcccc
Q 037651 366 PIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIG 445 (750)
Q Consensus 366 ~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 445 (750)
.++...+..+.+|+.+.+.++ +..+...+|.++.+|+.+++.++ ++.....+|.+|.+|+.+++..+ ++.....+|.
T Consensus 287 ~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 287 IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 233334444566666666543 44444555666666666666532 44344455666666666666554 4434445555
Q ss_pred CCCCCCEEEccCCcCcCCCCccccCCCCCCE
Q 037651 446 SLLTIRFLVLSNNHLSGEIPPSLKNCSLMDS 476 (750)
Q Consensus 446 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 476 (750)
++.+|+.+++..+ ++ .+..+|.+|++|+.
T Consensus 364 ~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 364 GCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred CCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 5666666655433 22 22344555555543
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=2.3e-13 Score=144.63 Aligned_cols=265 Identities=12% Similarity=0.052 Sum_probs=119.7
Q ss_pred CCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEe
Q 037651 31 TSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLK 110 (750)
Q Consensus 31 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~ 110 (750)
..++.+.+.++ ++.+...+|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+..+ +......+|.++++|+.++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeee
Confidence 34444444432 333333344443 3444444433 333333444442 3444444432 2222233444444455555
Q ss_pred CcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccCCCCCCeeecc
Q 037651 111 LSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGNLTFLEELYLT 190 (750)
Q Consensus 111 Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 190 (750)
++.|.++.....+|.. . +|+.+.+..+ ++.....+|.++++|+.+++..+ ++.+...+|.+ .+|+.+++
T Consensus 187 l~~n~l~~I~~~aF~~-~------~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l- 255 (401)
T 4fdw_A 187 LSKTKITKLPASTFVY-A------GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL- 255 (401)
T ss_dssp CTTSCCSEECTTTTTT-C------CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-
T ss_pred cCCCcceEechhhEee-c------ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-
Confidence 5444444443333331 1 4445554422 33333344445555555555442 33333334444 44555555
Q ss_pred cccCCcccchhccCCCCCCEEEcccCcCc----cccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCCceeEEEec
Q 037651 191 SNQMNGKFPESFGQLSAIRVLELSDNQWE----GFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPFKLRYLVIR 266 (750)
Q Consensus 191 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 266 (750)
.+.++.....+|.++++|+.+++.+|.+. ..++...|..|++|+.+.+.. .+.......+..+.+|+.+.+.
T Consensus 256 p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~----~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 256 PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE----SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT----TCCEECTTTTTTCCSCCEEEEC
T ss_pred CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC----ceEEEhhhhhcCCCCccEEEEC
Confidence 23333333444555555555555444332 113334455555555555543 2333333344444555555553
Q ss_pred cccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCc
Q 037651 267 YYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNH 318 (750)
Q Consensus 267 ~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~ 318 (750)
.+ +....+.+|.++ +|+.+++.+|......+..|......+..+.+..+.
T Consensus 332 ~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 332 AN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 32 334445556666 677777766665554444444443456666666554
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=4.7e-14 Score=134.09 Aligned_cols=108 Identities=27% Similarity=0.340 Sum_probs=53.5
Q ss_pred CCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCC
Q 037651 56 NLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSS 135 (750)
Q Consensus 56 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~ 135 (750)
+|++|++++|.++ .+|..|.++++|++|++++|. ++...+..|..+++|++|++++|.+++..+..|..++ +
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~------~ 103 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK------S 103 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT------T
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCC------C
Confidence 4444444444444 333444444444444444444 3333333444455555555555555544444444444 5
Q ss_pred ccEEEccCCcCcccCCccccCCCCCcEEEccCCccc
Q 037651 136 LARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFL 171 (750)
Q Consensus 136 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 171 (750)
|++|+|++|.++...+..|..+++|++|++++|.+.
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 104 LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555555555555433344556666666666666554
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=4.1e-14 Score=132.79 Aligned_cols=133 Identities=18% Similarity=0.218 Sum_probs=85.0
Q ss_pred CcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCC
Q 037651 353 LTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMT 432 (750)
Q Consensus 353 L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 432 (750)
.+.++++++.++ .+|..+ .++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 455666666665 555433 3466777777776665555566666777777777777765555556667777777777
Q ss_pred CCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCC
Q 037651 433 KNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIP 489 (750)
Q Consensus 433 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 489 (750)
+|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 777765555555666677777777777665444455666667777777776665443
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=3.1e-13 Score=143.55 Aligned_cols=265 Identities=14% Similarity=0.099 Sum_probs=190.0
Q ss_pred CCCcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEE
Q 037651 5 LPSIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLL 84 (750)
Q Consensus 5 l~~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 84 (750)
+..++.+.+.. .++.++. .++.++ +|+.+++..+ ++.+...+|.++ +|+.+.+.. .+..+.+.+|.+|++|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~-~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPK-DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECT-TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehH-hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 35666666654 3555555 566664 7888888766 666666777774 688888876 6666677888888888888
Q ss_pred ECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEE
Q 037651 85 DLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLE 164 (750)
Q Consensus 85 ~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 164 (750)
++++|+ +.......|. ..+|+.+.+..+ ++.+...+|..++ +|+.+++..+ ++.....+|.+ .+|+.+.
T Consensus 186 ~l~~n~-l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~------~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 186 DLSKTK-ITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTS------QLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp ECTTSC-CSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCT------TCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred ecCCCc-ceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCC------CCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 888887 4433334454 678888888744 7666677777766 8888888875 55455556766 7888888
Q ss_pred ccCCcccccCCccccCCCCCCeeecccccCC-----cccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecc
Q 037651 165 LWYNSFLGSIPPSIGNLTFLEELYLTSNQMN-----GKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLI 239 (750)
Q Consensus 165 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 239 (750)
+. +.++...+.+|.++++|+++++.+|.+. ...+.+|.++++|+.+++.+ .++. ++...|.+|++|+.+.+.
T Consensus 255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~-I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI-LGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE-ECTTTTTTCCSCCEEEEC
T ss_pred eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE-EhhhhhcCCCCccEEEEC
Confidence 84 4566666778888888888888887765 34556788888888888884 4543 666688888888888886
Q ss_pred cCCCCCceEeccCCCCCCCceeEEEeccccCCCCCChhhccCC-cccEEEcCCCCc
Q 037651 240 KTSNSSLSFNISFDWIPPFKLRYLVIRYYQLGPKFPTWLRNQT-ELTTLVLNGASI 294 (750)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~-~L~~L~L~~n~i 294 (750)
. .+.......+..+ +|+.+.+.++......+..|..++ +++.|.+..+.+
T Consensus 332 ~----~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 332 A----NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp T----TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred c----cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 6 3444455566777 888888888877766667777764 677887766543
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=6.1e-13 Score=142.08 Aligned_cols=334 Identities=11% Similarity=0.024 Sum_probs=219.0
Q ss_pred CCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCCCccccccc
Q 037651 19 PILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSR 98 (750)
Q Consensus 19 ~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~ 98 (750)
+.+.. .++.++++|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.+...+|.++.+|+.+.+..+ .......
T Consensus 60 tsIg~-~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~ 134 (394)
T 4fs7_A 60 VSIGY-AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVE 134 (394)
T ss_dssp EEECT-TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTT
T ss_pred eEhHH-HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecce
Confidence 33444 67888999999999754 77666778999999999999765 66566778999999999888766 3333345
Q ss_pred ccCCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccc
Q 037651 99 NLGTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSI 178 (750)
Q Consensus 99 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l 178 (750)
+|.++..++...... .......+|..+. +|+.+.+.++... .....|.++.+|+.+++..+ +.......|
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~------~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F 204 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCE------SLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCF 204 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCT------TCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTT
T ss_pred eeecccccccccCcc--ccccchhhhcccC------CCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhh
Confidence 566665444443332 2233345566555 8999999866433 55667889999999999876 555667788
Q ss_pred cCCCCCCeeecccccCCcccchhccCCCCCCEEEcccCcCccccChhhhcCCCCCCEEecccCCCCCceEeccCCCCCCC
Q 037651 179 GNLTFLEELYLTSNQMNGKFPESFGQLSAIRVLELSDNQWEGFITEAHLRNLTSLEELSLIKTSNSSLSFNISFDWIPPF 258 (750)
Q Consensus 179 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 258 (750)
.++..|+.+.+..+... +........+|+.+.+.... + .+....+..+..++.+.+..+. ..
T Consensus 205 ~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~----~~---------- 266 (394)
T 4fs7_A 205 AECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNK----LR---------- 266 (394)
T ss_dssp TTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTT----CE----------
T ss_pred ccccccceeecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCc----ce----------
Confidence 99999999988766543 33344456788888886543 2 2445567788888888776521 11
Q ss_pred ceeEEEeccccCCCCCChhhccCCcccEEEcCCCCcCCCcChHHHhhcCCCcEEEcCCCcCCCcCCCccccCCCceEECC
Q 037651 259 KLRYLVIRYYQLGPKFPTWLRNQTELTTLVLNGASISDTLPSWFWQLNLTLDELDVGGNHLSGRIPNTLVFRFPGSVDLS 338 (750)
Q Consensus 259 ~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~ 338 (750)
.....+..+..++.+......+ +...+..
T Consensus 267 --------------i~~~~F~~~~~l~~~~~~~~~i----~~~~F~~--------------------------------- 295 (394)
T 4fs7_A 267 --------------IGGSLFYNCSGLKKVIYGSVIV----PEKTFYG--------------------------------- 295 (394)
T ss_dssp --------------ECSCTTTTCTTCCEEEECSSEE----CTTTTTT---------------------------------
T ss_pred --------------eeccccccccccceeccCceee----ccccccc---------------------------------
Confidence 1223345555555554443321 1111111
Q ss_pred CCCCCCCCCCCCCCCcEEEeecccccCCCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCc
Q 037651 339 SNRFEGPLPLWSSNLTKLYLRDNLFSGPIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQ 418 (750)
Q Consensus 339 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 418 (750)
..+|+.+.+.++ ++ .++...+..+++|+.+++.++ ++.+...+|.+|.+|+.+++..+ ++.....
T Consensus 296 -----------~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 296 -----------CSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp -----------CTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred -----------cccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 234555555433 32 455666666788888888643 66566778888888888888765 6656667
Q ss_pred cccCCCCCCEEeCCCCccceeCCccccCCCCCCEE
Q 037651 419 FLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFL 453 (750)
Q Consensus 419 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 453 (750)
+|.+|.+|+.+++..+ +. .+..+|.++++|+.+
T Consensus 361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 8888888888888754 22 334567777777654
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.9e-16 Score=151.76 Aligned_cols=152 Identities=23% Similarity=0.265 Sum_probs=98.5
Q ss_pred CCCCCEEEccCCcCcCCCCc------cccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCC
Q 037651 447 LLTIRFLVLSNNHLSGEIPP------SLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKL 520 (750)
Q Consensus 447 l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 520 (750)
...++.++++++.+++..|. .+..+++|++|++++|++. .+| .+.. +++|+.|++++|+++ .+|..+..+
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSG-MENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHH-HTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-cccc-CCCCCEEECCCCCcc-cccchhhcC
Confidence 34444444444444444443 6667777777777777776 366 4433 677777777777776 566666666
Q ss_pred CCCcEEEcccCcCCCcCCccccccccCccCCCCCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCC
Q 037651 521 SALHILDLSHNNLSGPIPHCVGDFSAMKVKPPDTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLV 600 (750)
Q Consensus 521 ~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~ 600 (750)
++|+.|++++|++++ + | .+..+++|+.|++++|+++
T Consensus 93 ~~L~~L~L~~N~l~~-l------------------------------------------~-~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-L------------------------------------------S-GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp HHCSEEEEEEEECCC-H------------------------------------------H-HHHHHHHSSEEEESEEECC
T ss_pred CcCCEEECcCCcCCc-C------------------------------------------C-ccccCCCCCEEECCCCcCC
Confidence 777777777777764 1 1 3566677777888888777
Q ss_pred CCcc-cccCCCccCcEEEccCCccCcCCCcc----------ccCCCCCCeEECcCCcce
Q 037651 601 GKIP-TQIGKLEWLESLDLSRNKLSGSIPPS----------MVSIRFLSFLNLSFNNLS 648 (750)
Q Consensus 601 ~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~l~ls~N~l~ 648 (750)
+..+ ..+..+++|+.|++++|++++.+|.. +..+++|++|| +|+++
T Consensus 129 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 4322 46777788888888888887666553 66777777776 55443
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=5.2e-14 Score=131.89 Aligned_cols=131 Identities=17% Similarity=0.189 Sum_probs=67.4
Q ss_pred CCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEE
Q 037651 398 NLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSL 477 (750)
Q Consensus 398 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 477 (750)
.+++|++|++++|.+.. ++......++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 34455555555555542 232222222555555555555533 345555555555555555554333334555556666
Q ss_pred ecCCCcccccCCh--hhhhcCCCCCEEEccCccceeecCcc----ccCCCCCcEEEcccCcCC
Q 037651 478 DLGENQLSGNIPA--WIGESMPSLSILRLRSNHFNGTIPSE----LCKLSALHILDLSHNNLS 534 (750)
Q Consensus 478 ~L~~n~~~~~~p~--~~~~~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~ 534 (750)
++++|++. .+|. .+. .+++|+.|++++|++. .+|.. +..+++|+.||+++|...
T Consensus 94 ~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 66666554 4444 333 2556666666666665 34442 556666666666666543
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=1.2e-13 Score=129.48 Aligned_cols=130 Identities=17% Similarity=0.153 Sum_probs=88.6
Q ss_pred CCCCCEEecCCCcCcccCCcCCcCCC-CCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEE
Q 037651 375 TPFLTDLDISFNSLNGSIPQSVGNLK-QLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFL 453 (750)
Q Consensus 375 ~~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 453 (750)
+++|++|++++|++... +. +..+. +|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 55566666666666632 33 33333 777777777777754 466777777777777777775444445777788888
Q ss_pred EccCCcCcCCCCc--cccCCCCCCEEecCCCcccccCChh---hhhcCCCCCEEEccCccce
Q 037651 454 VLSNNHLSGEIPP--SLKNCSLMDSLDLGENQLSGNIPAW---IGESMPSLSILRLRSNHFN 510 (750)
Q Consensus 454 ~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~~~~~~p~~---~~~~l~~L~~L~Ls~n~l~ 510 (750)
++++|+++ .+|. .+..+++|+.|++++|++. .+|.. +...+++|+.|++++|...
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888775 4454 6777888888888888887 56664 2334888888888888765
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=4.9e-16 Score=148.89 Aligned_cols=86 Identities=26% Similarity=0.380 Sum_probs=47.1
Q ss_pred cccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCC
Q 037651 443 SIGSLLTIRFLVLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSA 522 (750)
Q Consensus 443 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 522 (750)
.+..+++|++|++++|.+++ +| .+..+++|+.|++++|++. .+|..+.. +++|+.|++++|++++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-HHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-CCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 45555555555555555553 34 4555555555555555555 45544432 4556666666666553 33 4555566
Q ss_pred CcEEEcccCcCC
Q 037651 523 LHILDLSHNNLS 534 (750)
Q Consensus 523 L~~L~Ls~n~l~ 534 (750)
|++|++++|+++
T Consensus 117 L~~L~l~~N~i~ 128 (198)
T 1ds9_A 117 LRVLYMSNNKIT 128 (198)
T ss_dssp SSEEEESEEECC
T ss_pred CCEEECCCCcCC
Confidence 666666666554
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2.5e-13 Score=126.16 Aligned_cols=69 Identities=25% Similarity=0.232 Sum_probs=40.0
Q ss_pred hhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceecC
Q 037651 583 LTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGEI 651 (750)
Q Consensus 583 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~i 651 (750)
|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|++|++++|++.+..
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred hcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 344455555666666655555555566666666666666666544445666666666666666665543
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=7.1e-13 Score=123.50 Aligned_cols=68 Identities=25% Similarity=0.289 Sum_probs=35.4
Q ss_pred hhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceec
Q 037651 583 LTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGE 650 (750)
Q Consensus 583 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ 650 (750)
|.++++|++|+|++|++++..+..|+.+++|+.|+|++|++++..|..+..+++|++|++++|++.+.
T Consensus 53 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 53 FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred hcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 33444455555555555544444445555555555555555544333455555555555555555543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=3.5e-12 Score=118.39 Aligned_cols=108 Identities=26% Similarity=0.247 Sum_probs=81.1
Q ss_pred CcCEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEEC
Q 037651 7 SIVELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDL 86 (750)
Q Consensus 7 ~L~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 86 (750)
+.+.++++++.++.+|.. + .++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 10 ~~~~l~~s~n~l~~ip~~--~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTG--I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSC--C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCcc--C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 356788888888887652 2 377888888888888777777888888888888888888666667778888888888
Q ss_pred cCCCCcccccccccCCCCCCCEEeCcCcccccc
Q 037651 87 SGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGE 119 (750)
Q Consensus 87 s~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 119 (750)
++|+ +.+..+..|..+++|++|++++|.+...
T Consensus 86 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCc-cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 8887 4544455677788888888888877654
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=8.7e-12 Score=116.05 Aligned_cols=105 Identities=28% Similarity=0.251 Sum_probs=64.8
Q ss_pred CEEecCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcC
Q 037651 9 VELHLPNSNLPILPIHFPSLNFTSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSG 88 (750)
Q Consensus 9 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 88 (750)
+.++++++.+..+|.. + .++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~~iP~~--~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG--I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSC--C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCC--c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 5666666666666541 1 25666666666666666666666666666666666666655445556666666666666
Q ss_pred CCCcccccccccCCCCCCCEEeCcCccccc
Q 037651 89 NSFLEGQLSRNLGTLCNLQTLKLSLNQFRG 118 (750)
Q Consensus 89 n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 118 (750)
|+ +....+..|..+++|++|++++|.+..
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred Cc-cceeCHHHhccccCCCEEEeCCCCccc
Confidence 66 333333346666666666666666653
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=5.6e-14 Score=147.84 Aligned_cols=62 Identities=18% Similarity=0.077 Sum_probs=29.2
Q ss_pred CCCCEEeCCCCccceeCCccccC-----CCCCCEEEccCCcCcCCCCccc-cCCCCCCEEecCCCccc
Q 037651 424 SSLYILDMTKNNFSGEIPESIGS-----LLTIRFLVLSNNHLSGEIPPSL-KNCSLMDSLDLGENQLS 485 (750)
Q Consensus 424 ~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~~~ 485 (750)
+.|+.|++++|.++......+.. .++|+.|+|++|.++......+ ..+++|+.|+|++|.++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 45666666666665433332221 1455555555555543222111 12334555555555554
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=4e-10 Score=120.12 Aligned_cols=135 Identities=7% Similarity=0.152 Sum_probs=78.8
Q ss_pred cCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEEEccCCcCcCCCCccccC
Q 037651 391 SIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFLVLSNNHLSGEIPPSLKN 470 (750)
Q Consensus 391 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 470 (750)
....+|.++..|+.+.+.++.. .....+|.++++|+.+.+.. .++.....+|.++.+|+.+++..+ ++.....+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 3345566666777776654432 24455666777777777753 344344556677777777777653 44445567777
Q ss_pred CCCCCEEecCCCcccccCChhhhhcCCCCCEEEccCccceeecCccccCCCCCcEEEcccCcC
Q 037651 471 CSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRSNHFNGTIPSELCKLSALHILDLSHNNL 533 (750)
Q Consensus 471 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 533 (750)
|.+|+.+.+..+ ++ .+....+.++++|+.+++.++.... ..+..+..|+.+.+..+.+
T Consensus 333 C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 333 CEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 777777777654 44 5777777777777777777765432 3456667777777665543
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.30 E-value=2.4e-10 Score=121.83 Aligned_cols=156 Identities=12% Similarity=0.056 Sum_probs=86.5
Q ss_pred CCCCCCC-CCcEEECCCCCCCCCccccccCCCCCCEEeCcCCC---CcccCCcccCCCCCCCEEECcCCCCccccccccc
Q 037651 25 FPSLNFT-SLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSND---LQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNL 100 (750)
Q Consensus 25 ~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l 100 (750)
.++.+++ .|+.+.+..+ ++.+-..+|.++++|+.+.+..|. ++.+-..+|.++.+|+.+.+..+ .......+|
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF 133 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAF 133 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhh
Confidence 4555553 4677776643 555555667777777777766542 44444566777777776666554 222334456
Q ss_pred CCCCCCCEEeCcCcccccccchhhhccccccCCCCccEEEccCCcCcccCCccccCCCCCcEEEccCCcccccCCccccC
Q 037651 101 GTLCNLQTLKLSLNQFRGEVSDFIDGLSECINSSSLARLELGYNQLTGNLPISLGYLKNLRYLELWYNSFLGSIPPSIGN 180 (750)
Q Consensus 101 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 180 (750)
..+.+|+.+.+..+ +.......+..+. .|+.+.+..+ ++.....+|. ..+|+.+.+..+- .......|..
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~------~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~ 203 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCY------SLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKV-TRIGTNAFSE 203 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCT------TCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTC-CEECTTTTTT
T ss_pred hhhcccccccccce-eeeecccceeccc------ccccccccce-eeEecccccc-ccceeEEEECCcc-cccccchhhh
Confidence 66777777776533 3333344444444 6666666554 3323333443 3456666665543 2244555666
Q ss_pred CCCCCeeeccccc
Q 037651 181 LTFLEELYLTSNQ 193 (750)
Q Consensus 181 l~~L~~L~Ls~n~ 193 (750)
+..++......+.
T Consensus 204 c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 204 CFALSTITSDSES 216 (394)
T ss_dssp CTTCCEEEECCSS
T ss_pred ccccceecccccc
Confidence 6666666554443
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=3.6e-13 Score=141.68 Aligned_cols=164 Identities=18% Similarity=0.165 Sum_probs=106.4
Q ss_pred CCCCEEeCcCCCCcccCCcccC-----CCCCCCEEECcCCCCcccccccc-cCCCCCCCEEeCcCcccccccchhhhccc
Q 037651 55 TNLLSLDLNSNDLQGDIPDGFA-----SLNSLQLLDLSGNSFLEGQLSRN-LGTLCNLQTLKLSLNQFRGEVSDFIDGLS 128 (750)
Q Consensus 55 ~~L~~L~Ls~n~i~~~~~~~~~-----~l~~L~~L~Ls~n~~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 128 (750)
++|++|+|++|.++......+. ..++|++|+|++|.+ +...... ...+++|++|+|++|.++......+...-
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 5788888888887754333332 236888888888873 3222222 23456788888888888765544443210
Q ss_pred cccCCCCccEEEccCCcCcc----cCCccccCCCCCcEEEccCCcccccC----CccccCCCCCCeeecccccCCcc---
Q 037651 129 ECINSSSLARLELGYNQLTG----NLPISLGYLKNLRYLELWYNSFLGSI----PPSIGNLTFLEELYLTSNQMNGK--- 197 (750)
Q Consensus 129 ~~~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~--- 197 (750)
. ...++|++|+|++|.++. .++..+..+++|++|+|++|.+.... +..+...++|++|+|++|.++..
T Consensus 151 ~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 L-HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp H-STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred H-hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 0 012378888888888763 23444567788888888888876532 44566677888888888888753
Q ss_pred -cchhccCCCCCCEEEcccCcCcc
Q 037651 198 -FPESFGQLSAIRVLELSDNQWEG 220 (750)
Q Consensus 198 -~~~~l~~l~~L~~L~L~~n~l~~ 220 (750)
++..+...++|++|++++|.+++
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCH
Confidence 23344556788888888888765
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=4.3e-11 Score=125.42 Aligned_cols=106 Identities=25% Similarity=0.233 Sum_probs=83.6
Q ss_pred CEEecCCC-cccccCChhhhhcCCCCCEEEccC-ccceeecCccccCCCCCcEEEcccCcCCCcCCccccccccCccCCC
Q 037651 475 DSLDLGEN-QLSGNIPAWIGESMPSLSILRLRS-NHFNGTIPSELCKLSALHILDLSHNNLSGPIPHCVGDFSAMKVKPP 552 (750)
Q Consensus 475 ~~L~L~~n-~~~~~~p~~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~ 552 (750)
..++.+++ +++ .+|. +.. +++|+.|+|++ |++.+..|..|..+++|+.|+|++|++++..|.
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------------- 74 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD------------- 74 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-------------
T ss_pred CEEEcCCCCCCC-ccCC-CCC-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH-------------
Confidence 35688887 787 6888 554 88899999986 888877777888899999999999988865443
Q ss_pred CCccccCceEEEEecceEeecccccccchhhhccccCCeEeccCCcCCCCcccccCCCccCcEEEccCCccCcC
Q 037651 553 DTEIYQGSLQVAIKGTQYVYQQTLYLMPVELTSLLHLGTLNLSGNQLVGKIPTQIGKLEWLESLDLSRNKLSGS 626 (750)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 626 (750)
.|.++++|+.|+|++|+|++..|..+..++ |+.|+|++|++...
T Consensus 75 -----------------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 75 -----------------------------AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp -----------------------------GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred -----------------------------HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 466777888899999999876666666666 88999999888743
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=4e-10 Score=118.00 Aligned_cols=102 Identities=26% Similarity=0.208 Sum_probs=51.6
Q ss_pred EecCCC-CCCCCCCCCCCCCCCCCcEEECCC-CCCCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcC
Q 037651 11 LHLPNS-NLPILPIHFPSLNFTSLQVLDLSN-NGFNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSG 88 (750)
Q Consensus 11 L~L~~~-~l~~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 88 (750)
++++++ +++.+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|.+|.++++|++|+|++
T Consensus 13 v~~~~~n~l~~ip~---l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDSLHH---LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTTTTT---SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCccCC---CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455555 5555442 44455555555553 555554445555555555555555555555555555555555555555
Q ss_pred CCCcccccccccCCCCCCCEEeCcCcccc
Q 037651 89 NSFLEGQLSRNLGTLCNLQTLKLSLNQFR 117 (750)
Q Consensus 89 n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 117 (750)
|+ +++..+..+..++ |++|++.+|.+.
T Consensus 90 N~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SC-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred Cc-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55 3322222333333 555555555444
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.99 E-value=4.8e-08 Score=103.42 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=71.5
Q ss_pred cCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCccccCCCCCCEE
Q 037651 374 KTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIGSLLTIRFL 453 (750)
Q Consensus 374 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 453 (750)
.+..|+.+.+..+ +......+|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +.......|.++.+|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 3555555555433 33344455556666666666543 44344455666666666666543 333444455666666666
Q ss_pred EccCCcCcCCCCccccCCCCCCEEecCCCcccccCChhhhhcCCCCCEEEccC
Q 037651 454 VLSNNHLSGEIPPSLKNCSLMDSLDLGENQLSGNIPAWIGESMPSLSILRLRS 506 (750)
Q Consensus 454 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~Ls~ 506 (750)
.+.++.++.....+|.+|.+|+.+++..+ ++ .|....+.++++|+.+.+..
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECC
Confidence 66666665445556666666666666543 33 45555555566666665543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.99 E-value=9.9e-08 Score=100.99 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=47.2
Q ss_pred CCCcchhccCCCCCEEecCCCcCcccCCcCCcCCCCCCeEECccCccccccCccccCCCCCCEEeCCCCccceeCCcccc
Q 037651 366 PIPNDLGQKTPFLTDLDISFNSLNGSIPQSVGNLKQLLTLVISNNNLSGGIPQFLKNISSLYILDMTKNNFSGEIPESIG 445 (750)
Q Consensus 366 ~i~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 445 (750)
.++...+..+++|+.+.+.++.++.+...+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++.....+|.
T Consensus 276 ~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~ 353 (379)
T 4h09_A 276 TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFE 353 (379)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence 445555555666777777666666556666767777777776543 44444556666666666666543 3333444454
Q ss_pred CC
Q 037651 446 SL 447 (750)
Q Consensus 446 ~l 447 (750)
++
T Consensus 354 ~c 355 (379)
T 4h09_A 354 GS 355 (379)
T ss_dssp TS
T ss_pred CC
Confidence 44
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=1.1e-09 Score=114.07 Aligned_cols=154 Identities=14% Similarity=0.178 Sum_probs=79.5
Q ss_pred cCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCcCcccccccchhhh--ccccccCCCCccEEEccC--CcCcc--
Q 037651 75 FASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSLNQFRGEVSDFID--GLSECINSSSLARLELGY--NQLTG-- 148 (750)
Q Consensus 75 ~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~~~~~~~L~~L~L~~--n~l~~-- 148 (750)
+..+++|+.|++++|.-. .++. +. +++|++|++..+.+.......+. .++ +|++|+|+. +...+
T Consensus 168 l~~~P~L~~L~L~g~~~l--~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp------~L~~L~L~~~~~~~~~~~ 237 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL--SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLP------NLEKLVLYVGVEDYGFDG 237 (362)
T ss_dssp HHTCTTCCEEEEECCBTC--BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCT------TCCEEEEECBCGGGTCCS
T ss_pred HhcCCCCcEEEEeCCCCc--eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCC------CCcEEEEeccccccccch
Confidence 345556666666554201 1222 22 55666666665555433322332 233 666666542 11110
Q ss_pred ---cCCccc--cCCCCCcEEEccCCcccccCCcccc---CCCCCCeeecccccCCccc----chhccCCCCCCEEEcccC
Q 037651 149 ---NLPISL--GYLKNLRYLELWYNSFLGSIPPSIG---NLTFLEELYLTSNQMNGKF----PESFGQLSAIRVLELSDN 216 (750)
Q Consensus 149 ---~~~~~l--~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n 216 (750)
.+...+ ..+++|++|++++|.+....+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|++++|
T Consensus 238 ~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 238 DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 011112 2467788888877777643332222 4677888888888877532 333345678888888888
Q ss_pred cCccccChhhhcC-CCCCCEEecccC
Q 037651 217 QWEGFITEAHLRN-LTSLEELSLIKT 241 (750)
Q Consensus 217 ~l~~~~~~~~l~~-l~~L~~L~l~~~ 241 (750)
.++..... .+.. + ...++++.+
T Consensus 318 ~i~d~~~~-~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 318 YLSDEMKK-ELQKSL--PMKIDVSDS 340 (362)
T ss_dssp BCCHHHHH-HHHHHC--CSEEECCSB
T ss_pred cCCHHHHH-HHHHHc--CCEEEecCC
Confidence 76643221 2222 2 345666663
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=4.4e-09 Score=109.39 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=30.7
Q ss_pred CccEEEccCCcCcccCCccc---cCCCCCcEEEccCCcccccC----CccccCCCCCCeeecccccCCcc
Q 037651 135 SLARLELGYNQLTGNLPISL---GYLKNLRYLELWYNSFLGSI----PPSIGNLTFLEELYLTSNQMNGK 197 (750)
Q Consensus 135 ~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~ 197 (750)
+|++|+|.+|.+....+..+ ..+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++..
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 56666665555543222222 13455666666655555421 22223445566666665555533
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=1.4e-07 Score=88.36 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=37.0
Q ss_pred CCCCCeEECccC-ccccc----cCccccCCCCCCEEeCCCCccceeC----CccccCCCCCCEEEccCCcCcCC----CC
Q 037651 399 LKQLLTLVISNN-NLSGG----IPQFLKNISSLYILDMTKNNFSGEI----PESIGSLLTIRFLVLSNNHLSGE----IP 465 (750)
Q Consensus 399 l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~ 465 (750)
.++|++|+|++| .+... +...+...++|++|+|++|.+.... ...+...++|++|+|++|.+... +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 444444455444 44321 2223334445555555555544321 12222334455555555544422 22
Q ss_pred ccccCCCCCCEEec--CCCccc
Q 037651 466 PSLKNCSLMDSLDL--GENQLS 485 (750)
Q Consensus 466 ~~~~~l~~L~~L~L--~~n~~~ 485 (750)
..+...++|++|+| ++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHhCCCceEEEecCCCCCCC
Confidence 33444445555555 445444
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.36 E-value=1.6e-07 Score=87.94 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=75.5
Q ss_pred cccccCCCCCCEEeCcCC-CCccc----CCcccCCCCCCCEEECcCCCCcccc----cccccCCCCCCCEEeCcCccccc
Q 037651 48 PHWLFNITNLLSLDLNSN-DLQGD----IPDGFASLNSLQLLDLSGNSFLEGQ----LSRNLGTLCNLQTLKLSLNQFRG 118 (750)
Q Consensus 48 ~~~~~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~ 118 (750)
...+...+.|++|+|++| .+... +..++...++|++|+|++|. +... +...+...++|++|+|++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 345566777777777777 76532 33456667778888888877 3322 23344556778888888888776
Q ss_pred ccchhhhccccccCCCCccEEEc--cCCcCccc----CCccccCCCCCcEEEccCCccc
Q 037651 119 EVSDFIDGLSECINSSSLARLEL--GYNQLTGN----LPISLGYLKNLRYLELWYNSFL 171 (750)
Q Consensus 119 ~~~~~l~~l~~~~~~~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 171 (750)
.....+... +...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 108 ~g~~~l~~~--L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEA--LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHG--GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHH--HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 433222211 112237888888 77877643 2334556678888888888765
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=7.5e-08 Score=94.73 Aligned_cols=43 Identities=35% Similarity=0.451 Sum_probs=18.7
Q ss_pred hccccCCeEeccCCcCCCCcccccCCCc--cCcEEEccCCccCcCCC
Q 037651 584 TSLLHLGTLNLSGNQLVGKIPTQIGKLE--WLESLDLSRNKLSGSIP 628 (750)
Q Consensus 584 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p 628 (750)
..+++|+.|+|++|++++. +.+..+. .|+.|+|++|++++.+|
T Consensus 193 ~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 193 QKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3444444444444444432 1122222 45555555555554443
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=2.9e-07 Score=90.55 Aligned_cols=67 Identities=24% Similarity=0.373 Sum_probs=37.6
Q ss_pred cCCCCCCEEeCCCCccce--eCCccccCCCCCCEEEccCCcCcCCCCccccCCC--CCCEEecCCCcccccCC
Q 037651 421 KNISSLYILDMTKNNFSG--EIPESIGSLLTIRFLVLSNNHLSGEIPPSLKNCS--LMDSLDLGENQLSGNIP 489 (750)
Q Consensus 421 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~~~~~~p 489 (750)
.++++|+.|+|++|++++ .++..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345666666666666664 3334445566666666666666543 1222222 66666666666665554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=2.8e-06 Score=77.25 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=14.8
Q ss_pred CCCEEeCcCCCCcccCCcccCCCCCCCEEECcCC
Q 037651 56 NLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGN 89 (750)
Q Consensus 56 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 89 (750)
+|++||+++|.++..--..+.++++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444444444444333333444444444444444
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=2.1e-06 Score=78.03 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=68.2
Q ss_pred CCCcEEECCCCCCCCCccccccCCCCCCEEeCcCCC-CcccCCcccCCC----CCCCEEECcCCCCcccccccccCCCCC
Q 037651 31 TSLQVLDLSNNGFNSTIPHWLFNITNLLSLDLNSND-LQGDIPDGFASL----NSLQLLDLSGNSFLEGQLSRNLGTLCN 105 (750)
Q Consensus 31 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l----~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 105 (750)
..|++||++++.++..--..+..+++|++|+|++|. +++.--..++.+ ++|++|++++|.-+++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999987666778899999999999995 775544556664 479999999986455555566788999
Q ss_pred CCEEeCcCcc
Q 037651 106 LQTLKLSLNQ 115 (750)
Q Consensus 106 L~~L~Ls~n~ 115 (750)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999885
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.03 E-value=0.00017 Score=66.73 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=18.0
Q ss_pred CCCCCeEECccCccccc----cCccccCCCCCCEEeCCCCccc
Q 037651 399 LKQLLTLVISNNNLSGG----IPQFLKNISSLYILDMTKNNFS 437 (750)
Q Consensus 399 l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~ 437 (750)
-+.|+.|+|++|.+... +...+..-++|++|+|++|.|+
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 44555555555555422 1222333445555555555554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.02 E-value=0.00041 Score=64.26 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=43.5
Q ss_pred CCCCCeEECccC-cccc----ccCccccCCCCCCEEeCCCCccceeCCcc----ccCCCCCCEEEccCCcCcCC----CC
Q 037651 399 LKQLLTLVISNN-NLSG----GIPQFLKNISSLYILDMTKNNFSGEIPES----IGSLLTIRFLVLSNNHLSGE----IP 465 (750)
Q Consensus 399 l~~L~~L~L~~n-~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~----~~ 465 (750)
-+.|++|+|++| .+.. .+...+..-+.|+.|+|++|++....... +..-+.|+.|+|++|.|... +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 455666666654 5432 12344555566777777777666433222 22345566666666665532 22
Q ss_pred ccccCCCCCCEEecCCC
Q 037651 466 PSLKNCSLMDSLDLGEN 482 (750)
Q Consensus 466 ~~~~~l~~L~~L~L~~n 482 (750)
.++..-+.|++|+|++|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 23444445555555543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.91 E-value=0.0015 Score=56.52 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=48.6
Q ss_pred CeEeccCCcCC-CCcccccCCCccCcEEEccCCccCcCCCccccCCCCCCeEECcCCcceec
Q 037651 590 GTLNLSGNQLV-GKIPTQIGKLEWLESLDLSRNKLSGSIPPSMVSIRFLSFLNLSFNNLSGE 650 (750)
Q Consensus 590 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ 650 (750)
..++.+++.++ ..+|..+. ++|+.|||++|+|+..-+..|..+++|++|+|++|++.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 47899999987 46776543 4699999999999977777788999999999999988763
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.46 E-value=0.0064 Score=52.42 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=19.3
Q ss_pred CCCEEeCcCCCCcccCCcccCCCCCCCEEECcCCC
Q 037651 56 NLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSGNS 90 (750)
Q Consensus 56 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 90 (750)
+|++|+|++|+|+...+..|..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 45555555555554444455555556666666655
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=58.61 E-value=10 Score=30.29 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=24.0
Q ss_pred CCCCccccccCCCCCCEEeCcCCCCcccCCcccCCCCCCCEEECcC
Q 037651 43 FNSTIPHWLFNITNLLSLDLNSNDLQGDIPDGFASLNSLQLLDLSG 88 (750)
Q Consensus 43 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 88 (750)
++.+-..+|.++.+|+.+.+..+ ++.+-..+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44444455566666666666543 3334445566666666655554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.32 E-value=16 Score=29.05 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=26.8
Q ss_pred CCcccCCcccCCCCCCCEEECcCCCCcccccccccCCCCCCCEEeCcC
Q 037651 66 DLQGDIPDGFASLNSLQLLDLSGNSFLEGQLSRNLGTLCNLQTLKLSL 113 (750)
Q Consensus 66 ~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~ 113 (750)
.++.+...+|.+|++|+.+.+..+ .+.....+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 344445556666666666666655 3333345566666666666654
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=23.57 E-value=34 Score=21.60 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=5.7
Q ss_pred ehhhHHHHHHHH
Q 037651 688 VSVGLGFIMGFW 699 (750)
Q Consensus 688 ~~~~~~~~~~~~ 699 (750)
.++++|.++++.
T Consensus 14 AGiVvG~v~gv~ 25 (38)
T 2k1k_A 14 VAVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehHHHHHHH
Confidence 444555544443
Done!