BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037652
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl
Acetyltransferase (E2)
Length = 239
Score = 161 bits (408), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 133/219 (60%), Gaps = 26/219 (11%)
Query: 110 FEDLPNTQIRKAIARRLLELKQTAPHLYLS-----------SKKHNI------KVSVNDI 152
F D+P + IR+ IA+RL++ KQT PH YLS K+ N K+SVND
Sbjct: 12 FTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISVNDF 71
Query: 153 VIKAVAVALKNVPEANSYWNVETEEIVLFD-AIDISIAVATEKGLMTPIVRNADQKSISA 211
+IKA A+A VPEANS W + ++ + +D+S+AV+T GL+TPIV NA K +
Sbjct: 72 IIKASALACLKVPEANSSW---MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVET 128
Query: 212 ISMEVKELAERA--GKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGNQV 269
I+ +V LA +A GKL PHEFQGGTF+ISNLGMF + F AIIN P A IL +G
Sbjct: 129 IANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASED- 187
Query: 270 VELVIGRNEIP-AVVTKMNLTLSADHRVFEGKVGCAFFS 307
+LV NE V + M++TLS DHRV +G VG + +
Sbjct: 188 -KLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLA 225
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|B Chain B, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|C Chain C, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
Length = 256
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 120/227 (52%), Gaps = 26/227 (11%)
Query: 111 EDLPNTQIRKAIARRLLELKQTAPHLYLS-------------------SKKHNIKVSVND 151
+++P +RKAIA+ + KQ PH ++ K+ ++
Sbjct: 19 KEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFA 78
Query: 152 IVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSISA 211
IKAVA ALK P+ NS W ++I+ I+ISIA+A L P+++NAD+KSI
Sbjct: 79 FFIKAVAQALKEFPQLNSTW--AGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKG 136
Query: 212 ISMEVKELAERA--GKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGNQV 269
I+ E+ ELA +A GKL+ + +GGTF++++ G F Q IIN P A IL V +
Sbjct: 137 IAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQV---ESI 193
Query: 270 VELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRDI 316
V+ + +++ AV +NL LS DHR+ +G + F A+ +N I
Sbjct: 194 VKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKI 240
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 139/284 (48%), Gaps = 32/284 (11%)
Query: 36 PSAKLLIPEHGLDASSLQASGPYGTLLKGDVLAAIXXXXXXXXXXXXXXXXXXXFHPQTS 95
PS + E G+D +Q +G G +LK D+ A + P T+
Sbjct: 133 PSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKAAPAAAKPATT 192
Query: 96 PAVSQGSNLELSDSFEDLPNTQIRKAIARRLLELKQTAPHLYLSSK-------------- 141
E ++ E + + IR+AIA+ ++ K TAPH+ L +
Sbjct: 193 EG-------EFPETREKM--SGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFK 243
Query: 142 ----KHNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLM 197
+ IK++ V+KA+ AL+ P N+ + ETEEI+ +I IA T++GL+
Sbjct: 244 AIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLL 303
Query: 198 TPIVRNADQKSISAISMEVKELAERA--GKLAPHEFQGGTFSISNLGMFPVDQFCAIINT 255
P++++AD+K I A++ E+ ELAE+A GKL P E +G + +I+N+G F +IN
Sbjct: 304 VPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINH 363
Query: 256 PLAGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEG 299
P IL +GR + E I R+ + L+LS DHR+ +G
Sbjct: 364 PEVAILGIGR---IAEKPIVRDGEIVAAPMLALSLSFDHRMIDG 404
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
Length = 242
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 28/224 (12%)
Query: 96 PAVSQGSNLELSDSFEDLPNTQIRKAIARRLLELKQTAPHLYLSSK-------------- 141
PA ++G E ++ E + + IR+AIA+ ++ K TAPH+ L +
Sbjct: 5 PATTEG---EFPETREKM--SGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFK 59
Query: 142 ----KHNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLM 197
+ IK++ V+KA+ AL+ P N+ + ETEEI+ +I IA T++GL+
Sbjct: 60 AIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLL 119
Query: 198 TPIVRNADQKSISAISMEVKELAERA--GKLAPHEFQGGTFSISNLGMFPVDQFCAIINT 255
P++++AD+K I A++ E+ ELAE+A GKL P E +G + +I+N+G F +IN
Sbjct: 120 VPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINH 179
Query: 256 PLAGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEG 299
P IL +GR + E I R+ + L+LS DHR+ +G
Sbjct: 180 PEVAILGIGR---IAEKPIVRDGEIVAAPMLALSLSFDHRMIDG 220
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|B Chain B, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|C Chain C, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1SCZ|A Chain A, Improved Structural Model For The Catalytic Domain Of
E.Coli Dihydrolipoamide Succinyltransferase
pdb|1E2O|A Chain A, Catalytic Domain From Dihydrolipoamide Succinyltransferase
Length = 233
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 26/224 (11%)
Query: 113 LPNTQIRKAIARRLLELKQTAPHLYLSS-------------------KKHNIKVSVNDIV 153
+P T++RK +A RLLE K + L + K+H I++
Sbjct: 7 VPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFY 66
Query: 154 IKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSISAIS 213
+KAV ALK PE N+ +++ +++V + D+S+AV+T +GL+TP++R+ D ++ I
Sbjct: 67 VKAVVEALKRYPEVNA--SIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIE 124
Query: 214 MEVKELA--ERAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGNQVVE 271
++KELA R GKL + GG F+I+N G+F IIN P + IL +
Sbjct: 125 KKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPM 184
Query: 272 LVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRD 315
V G+ EI + M L LS DHR+ +G+ F + D
Sbjct: 185 AVNGQVEI---LPMMYLALSYDHRLIDGRESVGFLVTIKELLED 225
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|B Chain B, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|C Chain C, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|D Chain D, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|E Chain E, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|F Chain F, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|G Chain G, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
Length = 224
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 98/214 (45%), Gaps = 27/214 (12%)
Query: 118 IRKAIARRLLELKQTAPHLYL--------------SSKKHNIKVSVNDIVIKAVAVALKN 163
+R+ I ++ + KQ PH + S+K N KV+V + + V LK
Sbjct: 14 LRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKARNRKVTVTGFLARIVPSILKQ 73
Query: 164 VPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAERA 223
P N+ ++ +L +I IAV T GL ++++AD+KS+ IS E+ + A RA
Sbjct: 74 YPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRA 133
Query: 224 --GKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGNQVVELVIGRNEIPA 281
KL E Q TF+I+N+G IIN P IL V R ++E GR
Sbjct: 134 RENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHR---ILERE-GRK---- 185
Query: 282 VVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRD 315
M L+LS DHR+ +G V F L D
Sbjct: 186 ---YMYLSLSCDHRLIDGAVATRFIVDLKKVIED 216
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAB|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAC|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAD|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAE|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAF|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
Length = 243
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 5/179 (2%)
Query: 140 SKKHNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTP 199
+KK +K++V +++KA A LK +P+ NS + ++ + I AV T GL+ P
Sbjct: 63 AKKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVP 122
Query: 200 IVRNADQKS--ISAISMEVKELAERAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPL 257
++RN DQKS A R+ KL QG F+IS+LG F I+N P
Sbjct: 123 VIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPE 182
Query: 258 AGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRDI 316
IL V + + + + G+ P ++ + L+LS DHRV G F L DI
Sbjct: 183 VAILGVSKAS-MQPVWDGKAFQPRLM--LPLSLSYDHRVINGAAAARFTKRLGDLLADI 238
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 5/179 (2%)
Query: 140 SKKHNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTP 199
++K +K++V +++KA A LK +P+ NS + ++ + I AV T GL+ P
Sbjct: 63 AEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVP 122
Query: 200 IVRNADQKS--ISAISMEVKELAERAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPL 257
++RN DQKS A R+ KL QG F+IS+LG F I+N P
Sbjct: 123 VIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPE 182
Query: 258 AGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRDI 316
IL V + + + + G+ P ++ + L+LS DHRV +G F L DI
Sbjct: 183 VAILGVSKAS-MQPVWDGKAFQPRLM--LPLSLSYDHRVIDGAAAARFTKRLGDLLADI 238
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 5/179 (2%)
Query: 140 SKKHNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTP 199
++K +K++V +++KA A LK +P+ NS + ++ + I AV T GL+ P
Sbjct: 63 AEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVP 122
Query: 200 IVRNADQKS--ISAISMEVKELAERAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPL 257
++RN DQKS A R+ KL QG F+I++LG F I+N P
Sbjct: 123 VIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTIASLGHIGGTAFTPIVNAPE 182
Query: 258 AGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRDI 316
IL V + + + + G+ P ++ + L+LS DHRV G F L DI
Sbjct: 183 VAILGVSKAS-MQPVWDGKAFQPRLM--LPLSLSYDHRVINGAAAARFTKRLGDLLADI 238
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
Length = 250
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 152 IVIKAVAVALKNVPEANSYW--NVETEEIVLFDAIDISIAVATEKGLMTPIVRNADQKSI 209
+ ++ + +ALK+ NS W + E ++ + + + ATE+GL+ P+V +A K+
Sbjct: 70 LTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNT 129
Query: 210 SAISMEVKEL--AERAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGILVVGRGN 267
++ V EL R G L P E +G TF++SN G VD +IN P A IL G G
Sbjct: 130 RELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAIL--GLGA 187
Query: 268 QVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSAL 309
V+ E+ A T M LT DHRV +G F L
Sbjct: 188 IKPRPVVVGGEVVARPT-MTLTCVFDHRVVDGAQVAQFMCEL 228
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 5/179 (2%)
Query: 140 SKKHNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTP 199
++K +K++V +++KA A LK +P+ NS + ++ + I AV T GL+ P
Sbjct: 63 AEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVP 122
Query: 200 IVRNADQKS--ISAISMEVKELAERAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPL 257
++RN DQKS A R+ KL QG F+IS+LG F I+N P
Sbjct: 123 VIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPE 182
Query: 258 AGILVVGRGNQVVELVIGRNEIPAVVTKMNLTLSADHRVFEGKVGCAFFSALCSNFRDI 316
IL V + + + + G+ P ++ + L+LS D RV G F L DI
Sbjct: 183 VAILGVSKAS-MQPVWDGKAFQPRLM--LPLSLSYDCRVINGAAAARFTKRLGDLLADI 238
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 143 HNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIVLFDAIDISIAVATEKGLMTPIVR 202
IK+S +KA ++ L P N+ + + I + +I IA+ TE+GL+ P V+
Sbjct: 81 RGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVK 140
Query: 203 NADQKSISAISMEVKELAE--RAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINTPLAGI 260
N +SI I+ E+ L + AG+L+ ++ GGTF++SN+G +I P I
Sbjct: 141 NVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAI 200
Query: 261 LVVGRGNQVVELVIGRNEIPAVVTK--MNLTLSADHRVFEGKVGCAFFSALCSNF 313
+G ++ + NE V MN++ SADHR+ +G + FS L ++
Sbjct: 201 GALG----TIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGAT-VSRFSNLWKSY 250
>pdb|2F5Z|K Chain K, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|L Chain L, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|M Chain M, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|N Chain N, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|O Chain O, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F60|K Chain K, Crystal Structure Of The Dihydrolipoamide Dehydrogenase
(e3)-binding Domain Of Human E3-binding Protein
Length = 64
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 33 KISPSAKLLIPEHGLDASSLQASGPYGTLLKGDVLAAI 70
++SP+A+ ++ +H LDAS A+GP G K D L +
Sbjct: 11 RLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLV 48
>pdb|1BAL|A Chain A, Three-Dimensional Solution Structure Of The E3-Binding
Domain Of The Dihydrolipoamide Succinyltransferase Core
From The 2-Oxoglutarate Dehydrogenase Multienzyme
Complex Of (Escherichia Coli)
pdb|1BBL|A Chain A, Three-Dimensional Solution Structure Of The E3-Binding
Domain Of The Dihydrolipoamide Succinyltransferase Core
From The 2-Oxoglutarate Dehydrogenase Multienzyme
Complex Of Escherichia Coli
Length = 51
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 24 AKVQKRSFTKISPSAKLLIPEHGLDASSLQASGPYGTLLKGDV 66
A +++++ +SP+ + L+ EH LDAS+++ +G G L + DV
Sbjct: 2 ASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDV 44
>pdb|1W4H|A Chain A, Peripheral-Subunit From Mesophilic, Thermophilic And
Hyperthermophilic Bacteria Fold By Ultrafast,
Apparently Two-State Transitions
Length = 47
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 34 ISPSAKLLIPEHGLDASSLQASGPYGTLLKGDV 66
+SP+ + L+ EH LDAS+++ +G G L + DV
Sbjct: 8 LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDV 40
>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 229
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 33 KISPSAKLLIPEHGLDASSLQASGPYGTLLKGDVLAAI 70
++SP+A+ ++ +H LDAS A+GP G K D L +
Sbjct: 130 RLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLV 167
>pdb|2BTG|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|2BTH|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 47
Score = 32.7 bits (73), Expect = 0.25, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 34 ISPSAKLLIPEHGLDASSLQASGPYGTLLKGDV 66
+SP+ + L+ EH LDAS+++ +G G L + DV
Sbjct: 8 LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDV 40
>pdb|2CYU|A Chain A, Nmr Structure Of A Downhill Folding Protein
Length = 40
Score = 32.3 bits (72), Expect = 0.32, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 34 ISPSAKLLIPEHGLDASSLQASGPYGTLLKGDV 66
+SP+ + L+ EH LDAS+++ +G G L + DV
Sbjct: 2 LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDV 34
>pdb|2X7X|A Chain A, Fructose Binding Periplasmic Domain Of Hybrid Two
Component System Bt1754
pdb|2X7X|B Chain B, Fructose Binding Periplasmic Domain Of Hybrid Two
Component System Bt1754
Length = 325
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 142 KHNIKVSVNDIVIKAVAVALKNVPEANSYWNVETEEIVLF--DAIDISIAVATEKGLMTP 199
K N ++ + V+V +++ + NS + E++ F + +D+ I A E MTP
Sbjct: 22 KMNDEILREAMFYNGVSVEIRSAGDDNSK---QAEDVHYFMDEGVDLLIISANEAAPMTP 78
Query: 200 IVRNADQKSISAISMEVKELAER 222
IV A QK I I ++ K L+++
Sbjct: 79 IVEEAYQKGIPVILVDRKILSDK 101
>pdb|1W4J|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4K|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 51
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 36 PSAKLLIPEHGLDASSLQASGPYGTLLKGDV 66
P+A+ L E G+DAS ++ +GP G + DV
Sbjct: 9 PAARRLAKELGIDASKVKGTGPGGVITVEDV 39
>pdb|2WXC|A Chain A, The Folding Mechanism Of Bbl: Plasticity Of Transition-
State Structure Observed Within An Ultrafast Folding
Protein Family
Length = 47
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 34 ISPSAKLLIPEHGLDASSLQASGPYGTLLKGDV 66
+SP+ + L+ E LDAS+++ +G G L + DV
Sbjct: 8 LSPAIRRLLAEWNLDASAIKGTGVGGRLTREDV 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,086,496
Number of Sequences: 62578
Number of extensions: 287541
Number of successful extensions: 833
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 31
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)