BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037654
         (86 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2RBB|A Chain A, Crystal Structure Of A Glyoxalase/bleomycin Resistance
          Protein/dioxygenase Family Enzyme From Burkholderia
          Phytofirmans Psjn
 pdb|2RBB|B Chain B, Crystal Structure Of A Glyoxalase/bleomycin Resistance
          Protein/dioxygenase Family Enzyme From Burkholderia
          Phytofirmans Psjn
          Length = 141

 Score = 30.8 bits (68), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 23/31 (74%)

Query: 7  ATLNHISRESSDIRRLADFYKEIFGFEEIEA 37
          A L++++  + DI   + FY+++FGF+EIE+
Sbjct: 7  ADLSYVNIFTRDIVAXSAFYQQVFGFQEIES 37


>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
          Mcee
 pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
          Mcee
 pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
          Mcee
 pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
          Mcee
          Length = 134

 Score = 30.0 bits (66), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 9  LNHISRESSDIRRLADFYKEIFGFEEIEA---PNFGEFKVIWLNL 50
          LNH++    D+ + A FYK I G +  EA   P  G   V+++NL
Sbjct: 6  LNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHG-VSVVFVNL 49


>pdb|2P3H|A Chain A, Crystal Structure Of The Corc_hlyc Domain Of A Putative
          Corynebacterium Glutamicum Hemolysin
          Length = 101

 Score = 25.8 bits (55), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 47 WLNLPGAFALHLIERNPGTKLPEGPYSTTS 76
          WL + G   L  +ER  G +LPEG Y T S
Sbjct: 14 WL-IDGDTPLDEVERAIGYELPEGDYETIS 42


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.139    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,954,638
Number of Sequences: 62578
Number of extensions: 113128
Number of successful extensions: 240
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 3
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)