BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037654
         (86 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q09751|LGUL_SCHPO Lactoylglutathione lyase OS=Schizosaccharomyces pombe (strain 972
          / ATCC 24843) GN=glo1 PE=1 SV=1
          Length = 302

 Score = 31.6 bits (70), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 14/77 (18%)

Query: 9  LNHISRESSDIRRLADFYKEIFGFEEIEAPNF--GEFKVIWLNLPGAFAL-HLIER---- 61
          LNH      D+ +   FY E+FG + I+   F   EF + +L   G  AL H +ER    
Sbjct: 12 LNHTMIRVKDLDKSLKFYTEVFGMKLIDQWVFEENEFSLSFLAFDGPGALNHGVERSKRE 71

Query: 62 -------NPGTKLPEGP 71
                 N GT+  EGP
Sbjct: 72 GILELTYNFGTEKKEGP 88


>sp|Q96PE7|MCEE_HUMAN Methylmalonyl-CoA epimerase, mitochondrial OS=Homo sapiens
          GN=MCEE PE=1 SV=1
          Length = 176

 Score = 30.4 bits (67), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 4  NIGATLNHISRESSDIRRLADFYKEIFGFEEIEA---PNFGEFKVIWLNL 50
          N+G  LNH++    D+ + A FYK I G +  EA   P  G   V+++NL
Sbjct: 44 NLG-RLNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHG-VSVVFVNL 91


>sp|P16635|LGUL_PSEPU Lactoylglutathione lyase OS=Pseudomonas putida GN=gloA PE=1 SV=3
          Length = 173

 Score = 30.0 bits (66), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 2  PVNIGATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFK 44
          P       NH      DI +  DFY  + GF+ ++  +F E K
Sbjct: 18 PATAQFVFNHTMLRVKDIEKSLDFYTRVLGFKLVDKRDFVEAK 60


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.139    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,113,949
Number of Sequences: 539616
Number of extensions: 1452039
Number of successful extensions: 3119
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3118
Number of HSP's gapped (non-prelim): 4
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)