Query 037654
Match_columns 86
No_of_seqs 188 out of 1120
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:06:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11478 putative lyase; Provi 99.3 4.2E-11 9.2E-16 73.7 8.2 60 3-62 1-62 (129)
2 cd07241 Glo_EDI_BRP_like_3 Thi 99.2 2E-10 4.3E-15 69.7 8.8 55 8-62 1-57 (125)
3 TIGR03645 glyox_marine lactoyl 99.2 2.3E-10 5.1E-15 74.4 8.1 57 7-63 3-79 (162)
4 cd08358 Glo_EDI_BRP_like_21 Th 99.1 1E-09 2.3E-14 69.6 8.3 31 8-38 2-32 (127)
5 cd09013 BphC-JF8_N_like N-term 99.1 6.7E-10 1.5E-14 68.0 6.6 43 4-50 2-44 (121)
6 cd07253 Glo_EDI_BRP_like_2 Thi 99.1 1.7E-09 3.8E-14 65.3 8.3 54 6-62 1-54 (125)
7 cd08353 Glo_EDI_BRP_like_7 Thi 99.1 2.5E-09 5.4E-14 67.0 9.0 57 6-63 1-71 (142)
8 PF00903 Glyoxalase: Glyoxalas 99.0 1.1E-09 2.5E-14 66.1 7.1 55 8-63 1-59 (128)
9 cd08352 Glo_EDI_BRP_like_1 Thi 99.0 4.5E-09 9.7E-14 63.5 9.1 57 7-63 2-60 (125)
10 cd07245 Glo_EDI_BRP_like_9 Thi 99.0 1.2E-09 2.6E-14 64.6 6.2 54 9-63 1-54 (114)
11 cd07243 2_3_CTD_C C-terminal d 99.0 3.3E-09 7.2E-14 67.7 8.4 48 4-51 2-52 (143)
12 PRK04101 fosfomycin resistance 99.0 2.6E-09 5.7E-14 67.4 7.7 50 6-60 2-51 (139)
13 cd08364 FosX FosX, a fosfomyci 99.0 3.9E-09 8.5E-14 66.1 8.0 54 6-60 2-58 (131)
14 cd08361 PpCmtC_N N-terminal do 99.0 2.5E-09 5.4E-14 66.3 7.0 50 5-58 3-53 (124)
15 cd07252 BphC1-RGP6_N_like N-te 99.0 2.3E-09 4.9E-14 65.9 6.6 50 7-59 1-51 (120)
16 cd08347 PcpA_C_like C-terminal 99.0 6.6E-09 1.4E-13 67.5 8.3 51 8-61 1-53 (157)
17 cd08342 HPPD_N_like N-terminal 99.0 7.2E-09 1.6E-13 65.1 8.2 52 9-61 1-52 (136)
18 cd08351 ChaP_like ChaP, an enz 99.0 6.8E-09 1.5E-13 63.9 7.9 50 7-60 3-52 (123)
19 cd08346 PcpA_N_like N-terminal 98.9 6.3E-09 1.4E-13 63.0 7.4 56 8-63 1-62 (126)
20 cd09014 BphC-JF8_C_like C-term 98.9 8.3E-09 1.8E-13 67.4 8.4 55 4-58 2-59 (166)
21 PF13669 Glyoxalase_4: Glyoxal 98.9 4.9E-09 1.1E-13 63.8 6.8 55 10-64 1-58 (109)
22 PLN03042 Lactoylglutathione ly 98.9 7E-09 1.5E-13 69.5 8.1 44 6-49 25-70 (185)
23 cd07255 Glo_EDI_BRP_like_12 Th 98.9 8.3E-09 1.8E-13 62.9 7.7 52 7-62 1-53 (125)
24 PLN02300 lactoylglutathione ly 98.9 1.4E-08 3E-13 71.3 9.1 49 3-51 19-69 (286)
25 cd07247 SgaA_N_like N-terminal 98.9 7.6E-09 1.6E-13 62.3 6.8 53 9-62 1-53 (114)
26 cd08360 MhqB_like_C C-terminal 98.9 1.1E-08 2.3E-13 64.1 7.6 51 7-60 2-55 (134)
27 cd07267 THT_Oxygenase_N N-term 98.9 8.2E-09 1.8E-13 62.8 6.9 41 6-51 1-41 (113)
28 cd07257 THT_oxygenase_C The C- 98.9 4.9E-09 1.1E-13 67.5 5.9 44 8-51 1-47 (153)
29 cd07265 2_3_CTD_N N-terminal d 98.9 8.9E-09 1.9E-13 63.0 6.5 33 6-38 2-34 (122)
30 cd07233 Glyoxalase_I Glyoxalas 98.9 1.1E-08 2.4E-13 61.9 6.7 53 9-61 1-58 (121)
31 TIGR00068 glyox_I lactoylgluta 98.9 2.8E-08 6E-13 63.4 8.4 48 4-51 13-62 (150)
32 cd08348 BphC2-C3-RGP6_C_like T 98.8 2.5E-08 5.5E-13 61.8 7.9 54 8-63 1-56 (134)
33 cd07249 MMCE Methylmalonyl-CoA 98.8 1.6E-08 3.4E-13 61.5 6.8 53 9-62 1-56 (128)
34 PLN02367 lactoylglutathione ly 98.8 3.1E-08 6.7E-13 68.7 8.9 44 6-49 73-118 (233)
35 TIGR03081 metmalonyl_epim meth 98.8 1.8E-08 4E-13 61.4 6.9 53 8-61 1-55 (128)
36 cd08363 FosB FosB, a fosfomyci 98.8 1.5E-08 3.2E-13 63.5 6.6 48 9-61 1-48 (131)
37 cd07242 Glo_EDI_BRP_like_6 Thi 98.8 3.6E-08 7.8E-13 60.4 8.1 53 8-63 1-56 (128)
38 cd07240 ED_TypeI_classII_N N-t 98.8 2.5E-08 5.4E-13 60.0 7.1 40 8-51 2-41 (117)
39 cd07237 BphC1-RGP6_C_like C-te 98.8 2.3E-08 4.9E-13 64.4 7.1 45 7-51 8-57 (154)
40 cd07256 HPCD_C_class_II C-term 98.8 3.9E-08 8.5E-13 63.7 8.0 31 7-37 2-32 (161)
41 cd08354 Glo_EDI_BRP_like_13 Th 98.8 8.2E-08 1.8E-12 58.1 8.6 51 9-62 1-51 (122)
42 cd08357 Glo_EDI_BRP_like_18 Th 98.8 4.3E-08 9.2E-13 59.6 7.3 27 11-37 2-28 (125)
43 cd08362 BphC5-RrK37_N_like N-t 98.8 3.3E-08 7.1E-13 59.9 6.7 42 6-51 1-42 (120)
44 TIGR03213 23dbph12diox 2,3-dih 98.8 2.8E-08 6.1E-13 69.3 7.0 52 6-60 1-53 (286)
45 cd07239 BphC5-RK37_C_like C-te 98.8 4.3E-08 9.2E-13 62.6 7.2 49 7-58 3-52 (144)
46 cd07244 FosA FosA, a Fosfomyci 98.8 4.7E-08 1E-12 59.9 6.9 46 8-58 1-46 (121)
47 cd07235 MRD Mitomycin C resist 98.7 7.8E-08 1.7E-12 58.6 7.2 49 9-60 1-49 (122)
48 cd07266 HPCD_N_class_II N-term 98.7 3.3E-08 7.1E-13 60.2 5.5 32 6-37 2-33 (121)
49 TIGR03211 catechol_2_3 catecho 98.7 5.3E-08 1.1E-12 68.3 6.4 35 3-37 140-174 (303)
50 COG0346 GloA Lactoylglutathion 98.7 2.5E-08 5.4E-13 59.4 4.0 31 8-38 2-32 (138)
51 cd06587 Glo_EDI_BRP_like This 98.7 1.5E-07 3.2E-12 54.7 6.9 53 11-64 1-53 (112)
52 cd07263 Glo_EDI_BRP_like_16 Th 98.7 1.3E-07 2.8E-12 56.4 6.8 51 11-61 1-54 (119)
53 cd07264 Glo_EDI_BRP_like_15 Th 98.6 4.3E-07 9.3E-12 55.2 8.8 29 9-37 1-29 (125)
54 PRK06724 hypothetical protein; 98.6 4.3E-08 9.3E-13 61.8 4.4 34 1-35 1-37 (128)
55 cd07250 HPPD_C_like C-terminal 98.6 1.6E-07 3.5E-12 62.9 7.3 58 6-63 1-65 (191)
56 cd07258 PpCmtC_C C-terminal do 98.6 7.8E-08 1.7E-12 61.4 5.5 39 10-51 1-39 (141)
57 cd08345 Fosfomycin_RP Fosfomyc 98.6 1.3E-07 2.8E-12 56.7 6.2 45 11-60 1-45 (113)
58 cd08343 ED_TypeI_classII_C C-t 98.6 3.3E-07 7.1E-12 56.9 7.1 51 10-60 1-53 (131)
59 cd08344 MhqB_like_N N-terminal 98.6 4.7E-07 1E-11 54.8 7.5 30 8-38 2-31 (112)
60 cd09012 Glo_EDI_BRP_like_24 Th 98.5 3.3E-07 7.2E-12 56.2 6.2 49 10-61 2-50 (124)
61 cd07262 Glo_EDI_BRP_like_19 Th 98.5 7.8E-07 1.7E-11 54.2 7.7 50 9-61 1-54 (123)
62 TIGR03213 23dbph12diox 2,3-dih 98.5 5.1E-07 1.1E-11 63.0 7.3 46 6-51 140-190 (286)
63 cd07254 Glo_EDI_BRP_like_20 Th 98.5 8.2E-07 1.8E-11 54.0 7.2 29 10-38 3-31 (120)
64 TIGR01263 4HPPD 4-hydroxypheny 98.5 4.4E-07 9.6E-12 65.6 6.9 59 3-61 153-218 (353)
65 TIGR02295 HpaD 3,4-dihydroxyph 98.5 3.2E-07 6.9E-12 63.9 5.8 33 6-38 2-34 (294)
66 TIGR03211 catechol_2_3 catecho 98.5 6.3E-07 1.4E-11 62.9 7.2 33 6-38 2-34 (303)
67 cd07251 Glo_EDI_BRP_like_10 Th 98.5 6.8E-07 1.5E-11 53.8 5.8 47 12-62 2-48 (121)
68 TIGR02295 HpaD 3,4-dihydroxyph 98.4 8.6E-07 1.9E-11 61.8 7.0 34 4-37 132-165 (294)
69 cd07261 Glo_EDI_BRP_like_11 Th 98.4 1.6E-06 3.5E-11 52.1 7.4 48 12-63 2-49 (114)
70 COG2514 Predicted ring-cleavag 98.4 1.6E-06 3.4E-11 61.1 8.1 55 6-64 8-62 (265)
71 cd08359 Glo_EDI_BRP_like_22 Th 98.4 1.6E-06 3.5E-11 52.4 7.1 46 11-60 4-50 (119)
72 cd09011 Glo_EDI_BRP_like_23 Th 98.4 5.5E-07 1.2E-11 54.9 4.6 29 8-36 2-30 (120)
73 PRK10291 glyoxalase I; Provisi 98.4 2E-06 4.4E-11 53.1 6.6 39 13-51 1-41 (129)
74 cd08349 BLMA_like Bleomycin bi 98.3 3.6E-06 7.8E-11 49.9 7.0 47 13-62 3-49 (112)
75 cd08350 BLMT_like BLMT, a bleo 98.3 4.8E-06 1E-10 50.8 7.0 47 11-62 5-51 (120)
76 cd07246 Glo_EDI_BRP_like_8 Thi 98.2 1.3E-05 2.8E-10 48.2 7.5 49 12-61 5-55 (122)
77 cd08355 Glo_EDI_BRP_like_14 Th 98.2 1.4E-05 3.1E-10 48.6 7.6 48 12-60 3-52 (122)
78 COG3324 Predicted enzyme relat 98.2 8.6E-06 1.9E-10 51.9 6.1 47 4-50 5-51 (127)
79 COG2514 Predicted ring-cleavag 98.1 2.3E-05 5.1E-10 55.2 8.4 50 6-60 166-215 (265)
80 cd07238 Glo_EDI_BRP_like_5 Thi 98.1 1.6E-05 3.4E-10 47.6 6.7 46 11-60 3-50 (112)
81 COG3565 Predicted dioxygenase 98.1 2.3E-05 4.9E-10 49.5 6.5 30 8-37 4-33 (138)
82 TIGR01263 4HPPD 4-hydroxypheny 98.0 2.7E-05 5.9E-10 56.3 7.7 54 8-62 2-56 (353)
83 cd08356 Glo_EDI_BRP_like_17 Th 98.0 2.1E-05 4.4E-10 47.9 5.8 43 12-60 5-47 (113)
84 PLN02875 4-hydroxyphenylpyruva 98.0 2.1E-05 4.6E-10 58.3 6.7 57 6-62 178-242 (398)
85 PF12681 Glyoxalase_2: Glyoxal 98.0 2.1E-05 4.5E-10 46.5 4.8 24 14-37 1-24 (108)
86 PLN02300 lactoylglutathione ly 97.8 0.00016 3.5E-09 50.7 8.4 44 7-50 153-198 (286)
87 PF13468 Glyoxalase_3: Glyoxal 97.8 5.2E-05 1.1E-09 49.6 4.9 53 9-62 1-55 (175)
88 KOG2944 Glyoxalase [Carbohydra 97.3 0.0022 4.8E-08 42.4 7.3 54 7-61 114-168 (170)
89 COG3607 Predicted lactoylgluta 97.1 0.00066 1.4E-08 43.3 3.7 29 8-37 3-31 (133)
90 KOG2943 Predicted glyoxalase [ 97.1 0.00057 1.2E-08 48.1 3.6 30 7-36 16-45 (299)
91 KOG2943 Predicted glyoxalase [ 97.1 0.00075 1.6E-08 47.5 4.0 54 8-63 149-203 (299)
92 cd06588 PhnB_like Escherichia 97.0 0.0053 1.1E-07 38.0 7.1 49 12-61 3-64 (128)
93 PRK01037 trmD tRNA (guanine-N( 97.0 0.00065 1.4E-08 49.8 3.3 27 8-34 247-273 (357)
94 cd08353 Glo_EDI_BRP_like_7 Thi 97.0 0.0058 1.3E-07 37.9 7.2 53 7-60 86-140 (142)
95 PLN03042 Lactoylglutathione ly 97.0 0.0094 2E-07 40.0 8.2 60 7-67 120-180 (185)
96 PLN02367 lactoylglutathione ly 97.0 0.0097 2.1E-07 41.5 8.5 58 7-65 168-226 (233)
97 PF14506 CppA_N: CppA N-termin 96.9 0.0053 1.2E-07 38.9 6.2 38 10-51 2-39 (125)
98 cd08342 HPPD_N_like N-terminal 96.7 0.03 6.4E-07 34.8 8.7 56 7-63 68-125 (136)
99 cd08347 PcpA_C_like C-terminal 96.6 0.028 6E-07 36.3 8.4 62 7-68 64-127 (157)
100 cd07249 MMCE Methylmalonyl-CoA 96.5 0.022 4.8E-07 34.0 6.8 52 7-59 71-127 (128)
101 PRK11478 putative lyase; Provi 96.4 0.041 8.8E-07 33.2 7.7 53 7-60 74-128 (129)
102 cd08360 MhqB_like_C C-terminal 96.4 0.046 9.9E-07 33.8 8.0 56 7-62 61-121 (134)
103 PRK10291 glyoxalase I; Provisi 96.2 0.058 1.3E-06 32.9 7.7 56 7-63 64-122 (129)
104 KOG2944 Glyoxalase [Carbohydra 96.2 0.016 3.5E-07 38.4 5.3 28 8-35 22-49 (170)
105 COG2764 PhnB Uncharacterized p 96.0 0.072 1.6E-06 34.3 7.3 46 13-59 5-63 (136)
106 TIGR03645 glyox_marine lactoyl 95.9 0.074 1.6E-06 34.3 7.3 57 7-64 92-154 (162)
107 cd08348 BphC2-C3-RGP6_C_like T 95.9 0.12 2.5E-06 31.5 7.9 58 7-64 64-123 (134)
108 cd07258 PpCmtC_C C-terminal do 95.8 0.22 4.8E-06 31.5 9.1 57 6-62 54-115 (141)
109 cd08352 Glo_EDI_BRP_like_1 Thi 95.8 0.084 1.8E-06 31.2 6.7 52 7-59 71-124 (125)
110 TIGR00068 glyox_I lactoylgluta 95.6 0.13 2.9E-06 32.3 7.5 55 7-62 85-142 (150)
111 cd07257 THT_oxygenase_C The C- 95.5 0.15 3.4E-06 32.4 7.6 56 7-62 66-126 (153)
112 PLN02875 4-hydroxyphenylpyruva 95.5 0.086 1.9E-06 39.4 7.1 29 9-37 1-29 (398)
113 PF13669 Glyoxalase_4: Glyoxal 95.4 0.026 5.6E-07 33.9 3.4 30 7-37 67-96 (109)
114 KOG0638 4-hydroxyphenylpyruvat 95.3 0.02 4.3E-07 41.9 3.3 32 5-36 14-45 (381)
115 cd07237 BphC1-RGP6_C_like C-te 95.3 0.22 4.8E-06 31.7 7.9 57 7-63 72-133 (154)
116 cd07243 2_3_CTD_C C-terminal d 95.1 0.23 4.9E-06 31.3 7.4 55 7-61 66-125 (143)
117 TIGR03081 metmalonyl_epim meth 95.0 0.14 3E-06 30.6 6.0 53 7-60 71-128 (128)
118 cd07263 Glo_EDI_BRP_like_16 Th 94.8 0.27 5.9E-06 28.6 6.8 52 7-59 66-118 (119)
119 cd07239 BphC5-RK37_C_like C-te 94.8 0.42 9.2E-06 30.1 8.1 58 7-64 58-120 (144)
120 cd07254 Glo_EDI_BRP_like_20 Th 94.6 0.47 1E-05 28.2 7.7 55 7-61 57-117 (120)
121 cd07241 Glo_EDI_BRP_like_3 Thi 94.6 0.45 9.7E-06 28.1 7.5 52 7-58 69-124 (125)
122 cd07233 Glyoxalase_I Glyoxalas 94.6 0.43 9.3E-06 28.1 7.4 51 7-58 69-120 (121)
123 COG3185 4-hydroxyphenylpyruvat 94.5 0.05 1.1E-06 40.1 3.5 31 6-36 165-197 (363)
124 PRK10148 hypothetical protein; 94.5 0.39 8.5E-06 30.8 7.4 24 12-35 5-29 (147)
125 cd09014 BphC-JF8_C_like C-term 94.5 0.63 1.4E-05 30.0 8.4 55 7-61 68-127 (166)
126 cd07242 Glo_EDI_BRP_like_6 Thi 94.4 0.59 1.3E-05 28.0 8.0 54 7-60 67-127 (128)
127 cd08343 ED_TypeI_classII_C C-t 94.2 0.72 1.6E-05 28.1 8.6 58 7-64 58-120 (131)
128 cd08346 PcpA_N_like N-terminal 93.9 0.41 8.8E-06 28.2 6.3 52 7-58 72-125 (126)
129 cd07267 THT_Oxygenase_N N-term 93.9 0.78 1.7E-05 27.2 7.7 54 7-61 56-110 (113)
130 cd07255 Glo_EDI_BRP_like_12 Th 93.5 0.9 2E-05 27.0 8.5 57 6-62 62-120 (125)
131 PF14507 CppA_C: CppA C-termin 93.5 0.036 7.7E-07 34.1 1.1 23 8-31 5-27 (101)
132 PRK06724 hypothetical protein; 93.5 0.99 2.1E-05 28.0 7.7 55 7-61 62-123 (128)
133 cd08359 Glo_EDI_BRP_like_22 Th 93.3 0.84 1.8E-05 26.9 7.0 49 11-60 69-119 (119)
134 PF12681 Glyoxalase_2: Glyoxal 93.2 0.93 2E-05 26.1 7.0 51 7-59 55-108 (108)
135 cd07240 ED_TypeI_classII_N N-t 93.0 1.1 2.3E-05 26.2 7.0 54 7-61 56-114 (117)
136 cd07245 Glo_EDI_BRP_like_9 Thi 93.0 0.6 1.3E-05 26.6 5.8 50 7-57 63-113 (114)
137 cd06587 Glo_EDI_BRP_like This 92.7 0.83 1.8E-05 25.6 6.1 30 7-37 60-89 (112)
138 cd07253 Glo_EDI_BRP_like_2 Thi 92.6 1.2 2.6E-05 26.0 6.9 53 7-60 66-124 (125)
139 cd07265 2_3_CTD_N N-terminal d 92.6 1.3 2.9E-05 26.3 7.3 55 7-61 60-119 (122)
140 PF14696 Glyoxalase_5: Hydroxy 92.4 0.26 5.7E-06 31.8 3.9 55 2-60 3-57 (139)
141 PRK04101 fosfomycin resistance 92.4 1.2 2.6E-05 27.6 6.9 55 7-62 62-120 (139)
142 cd08364 FosX FosX, a fosfomyci 92.0 1.4 3E-05 27.0 6.8 54 8-62 66-123 (131)
143 cd08354 Glo_EDI_BRP_like_13 Th 91.9 1.4 3E-05 25.9 6.5 53 7-60 66-121 (122)
144 cd07238 Glo_EDI_BRP_like_5 Thi 91.9 1.6 3.4E-05 25.5 7.6 53 8-61 57-111 (112)
145 cd08351 ChaP_like ChaP, an enz 91.6 1.9 4E-05 25.9 6.9 53 8-61 58-121 (123)
146 cd07262 Glo_EDI_BRP_like_19 Th 91.4 1.8 4E-05 25.6 6.7 52 8-59 64-122 (123)
147 cd09013 BphC-JF8_N_like N-term 90.9 2.2 4.7E-05 25.4 6.9 54 7-60 61-117 (121)
148 cd08345 Fosfomycin_RP Fosfomyc 89.6 2 4.2E-05 25.0 5.7 54 7-61 54-111 (113)
149 cd07247 SgaA_N_like N-terminal 89.2 3 6.4E-05 24.3 7.7 52 7-59 60-113 (114)
150 cd07266 HPCD_N_class_II N-term 89.0 3.2 7E-05 24.4 7.1 54 7-60 59-117 (121)
151 cd07250 HPPD_C_like C-terminal 88.9 0.75 1.6E-05 30.6 3.8 30 7-37 82-111 (191)
152 KOG4657 Uncharacterized conser 88.6 2 4.3E-05 30.1 5.8 34 18-52 146-179 (246)
153 cd08363 FosB FosB, a fosfomyci 88.3 3.2 6.9E-05 25.4 6.2 57 7-64 58-118 (131)
154 PF13468 Glyoxalase_3: Glyoxal 88.2 0.9 2E-05 29.5 3.8 25 6-30 151-175 (175)
155 cd09012 Glo_EDI_BRP_like_24 Th 87.9 4.1 8.8E-05 24.3 6.8 52 8-59 68-122 (124)
156 cd07244 FosA FosA, a Fosfomyci 87.3 3.6 7.9E-05 24.5 5.9 55 7-63 56-112 (121)
157 PF15067 FAM124: FAM124 family 87.1 2 4.3E-05 30.1 5.1 28 9-36 129-158 (236)
158 cd09011 Glo_EDI_BRP_like_23 Th 86.1 5.1 0.00011 23.7 6.7 52 8-60 64-118 (120)
159 cd07246 Glo_EDI_BRP_like_8 Thi 85.4 5.4 0.00012 23.2 7.3 53 7-60 67-121 (122)
160 cd07256 HPCD_C_class_II C-term 85.3 7.4 0.00016 24.7 7.2 56 7-62 62-124 (161)
161 cd07264 Glo_EDI_BRP_like_15 Th 84.8 6 0.00013 23.2 7.1 49 10-60 73-124 (125)
162 cd08344 MhqB_like_N N-terminal 84.7 6 0.00013 23.2 7.1 52 8-60 55-108 (112)
163 cd08362 BphC5-RrK37_N_like N-t 84.0 6.4 0.00014 23.0 7.7 54 8-61 58-117 (120)
164 cd07252 BphC1-RGP6_N_like N-te 83.2 7.4 0.00016 23.1 8.1 55 7-61 56-117 (120)
165 cd08349 BLMA_like Bleomycin bi 82.3 7.2 0.00016 22.3 6.5 52 7-59 57-111 (112)
166 KOG0638 4-hydroxyphenylpyruvat 81.6 0.8 1.7E-05 33.7 1.3 34 4-37 174-209 (381)
167 cd08361 PpCmtC_N N-terminal do 81.1 9.5 0.00021 22.9 7.5 55 8-62 59-120 (124)
168 PF06983 3-dmu-9_3-mt: 3-demet 79.9 2.5 5.5E-05 26.0 3.0 43 17-60 11-62 (116)
169 cd07268 Glo_EDI_BRP_like_4 Thi 79.9 2.7 5.8E-05 27.6 3.1 26 9-34 2-27 (149)
170 PF06185 YecM: YecM protein; 79.9 3.1 6.8E-05 28.2 3.6 28 7-34 33-60 (185)
171 PF02208 Sorb: Sorbin homologo 78.1 0.7 1.5E-05 24.4 0.0 25 6-30 9-33 (47)
172 cd07261 Glo_EDI_BRP_like_11 Th 75.8 13 0.00028 21.5 7.0 51 7-59 58-113 (114)
173 PRK11700 hypothetical protein; 75.8 4 8.7E-05 27.7 3.2 28 7-34 38-65 (187)
174 cd08350 BLMT_like BLMT, a bleo 72.7 17 0.00037 21.4 6.5 50 10-60 60-118 (120)
175 PF00903 Glyoxalase: Glyoxalas 69.7 19 0.00041 20.7 7.2 51 8-58 73-128 (128)
176 cd08355 Glo_EDI_BRP_like_14 Th 68.5 21 0.00046 20.9 7.4 50 8-59 68-120 (122)
177 PF02952 Fucose_iso_C: L-fucos 65.8 12 0.00026 23.5 3.6 27 9-35 113-139 (142)
178 PF13176 TPR_7: Tetratricopept 57.1 12 0.00025 17.8 1.9 19 15-33 11-29 (36)
179 PTZ00330 acetyltransferase; Pr 56.8 21 0.00046 21.5 3.5 26 8-36 115-140 (147)
180 PF08445 FR47: FR47-like prote 53.7 35 0.00075 19.6 3.9 22 14-36 60-81 (86)
181 PF00583 Acetyltransf_1: Acety 53.2 19 0.00041 19.4 2.7 26 7-33 57-83 (83)
182 cd07235 MRD Mitomycin C resist 51.6 47 0.001 19.3 6.5 50 9-59 67-121 (122)
183 COG3185 4-hydroxyphenylpyruvat 47.3 1E+02 0.0022 23.1 6.2 34 4-37 18-51 (363)
184 PRK10146 aminoalkylphosphonic 46.7 25 0.00055 21.1 2.7 27 8-35 109-136 (144)
185 cd01205 WASP WASP-type EVH1 do 45.9 32 0.0007 21.1 3.0 20 11-30 83-102 (105)
186 COG0456 RimI Acetyltransferase 45.8 37 0.00081 21.1 3.5 27 10-37 127-154 (177)
187 COG3102 Uncharacterized protei 42.9 37 0.0008 22.9 3.1 26 7-32 38-63 (185)
188 PRK10140 putative acetyltransf 40.9 56 0.0012 19.8 3.7 29 8-37 112-141 (162)
189 PF07063 DUF1338: Domain of un 40.8 33 0.00071 24.9 2.8 28 7-35 183-216 (302)
190 PF13508 Acetyltransf_7: Acety 40.3 26 0.00056 19.1 1.9 22 10-34 58-79 (79)
191 PRK10975 TDP-fucosamine acetyl 38.0 65 0.0014 20.8 3.8 29 7-36 158-187 (194)
192 TIGR02382 wecD_rffC TDP-D-fuco 37.3 43 0.00093 21.7 2.8 27 8-35 156-183 (191)
193 PRK10314 putative acyltransfer 36.7 44 0.00096 21.1 2.8 23 12-37 112-134 (153)
194 COG1437 CyaB Adenylate cyclase 36.1 1.4E+02 0.003 20.2 6.0 27 9-36 78-104 (178)
195 TIGR01575 rimI ribosomal-prote 35.1 48 0.001 19.1 2.6 28 8-36 87-115 (131)
196 PRK09491 rimI ribosomal-protei 34.9 78 0.0017 19.2 3.6 28 8-36 96-124 (146)
197 PRK05279 N-acetylglutamate syn 34.5 37 0.00081 25.3 2.4 26 8-37 392-417 (441)
198 COG3865 Uncharacterized protei 33.6 75 0.0016 20.9 3.4 43 17-60 14-66 (151)
199 TIGR00124 cit_ly_ligase [citra 33.2 1.4E+02 0.003 21.8 5.1 38 7-50 82-119 (332)
200 PF13420 Acetyltransf_4: Acety 32.8 83 0.0018 19.0 3.5 30 7-37 109-139 (155)
201 PRK09831 putative acyltransfer 32.6 68 0.0015 19.6 3.1 18 20-38 110-127 (147)
202 TIGR03515 GldC gliding motilit 32.3 50 0.0011 20.5 2.3 22 10-31 51-74 (108)
203 PF04761 Phage_Treg: Lactococc 31.5 44 0.00096 18.0 1.7 13 19-31 15-27 (57)
204 PF03634 TCP: TCP family trans 31.1 42 0.00091 21.1 1.9 17 18-34 25-43 (138)
205 TIGR03448 mycothiol_MshD mycot 30.0 76 0.0016 21.7 3.2 28 8-36 259-287 (292)
206 PF14696 Glyoxalase_5: Hydroxy 29.6 1.6E+02 0.0034 18.9 7.5 56 7-63 72-128 (139)
207 PF00515 TPR_1: Tetratricopept 29.3 60 0.0013 14.5 1.9 17 16-32 14-30 (34)
208 TIGR03103 trio_acet_GNAT GNAT- 29.2 77 0.0017 24.7 3.4 28 7-35 187-215 (547)
209 PRK15130 spermidine N1-acetylt 28.7 1.2E+02 0.0026 19.2 3.9 29 8-37 116-145 (186)
210 PF13673 Acetyltransf_10: Acet 27.5 61 0.0013 18.5 2.1 20 12-32 98-117 (117)
211 smart00671 SEL1 Sel1-like repe 27.0 67 0.0014 14.4 1.9 13 17-29 19-31 (36)
212 PHA02503 putative transcriptio 26.6 61 0.0013 17.4 1.7 12 19-30 15-26 (57)
213 cd00578 L-fuc_L-ara-isomerases 26.5 69 0.0015 24.0 2.7 27 8-34 425-451 (452)
214 PF13225 DUF4033: Domain of un 26.4 1.3E+02 0.0027 18.0 3.2 20 22-41 49-68 (86)
215 PRK13688 hypothetical protein; 26.2 94 0.002 20.0 3.0 17 21-38 118-134 (156)
216 PF10903 DUF2691: Protein of u 25.3 1.1E+02 0.0024 20.1 3.2 24 8-31 109-132 (153)
217 smart00459 Sorb Sorbin homolog 25.2 45 0.00098 17.9 1.1 13 18-30 24-36 (50)
218 PRK10514 putative acetyltransf 25.2 72 0.0016 19.1 2.2 26 11-37 100-126 (145)
219 cd00837 EVH1 EVH1 (Enabled, Va 25.0 1.2E+02 0.0027 18.0 3.2 20 11-30 82-101 (104)
220 KOG2003 TPR repeat-containing 24.7 78 0.0017 25.1 2.7 25 9-33 496-520 (840)
221 PRK03624 putative acetyltransf 23.8 1E+02 0.0022 17.9 2.7 28 8-36 101-129 (140)
222 COG5470 Uncharacterized conser 23.4 1.1E+02 0.0023 18.7 2.6 20 9-28 53-72 (96)
223 PF00568 WH1: WH1 domain; Int 23.4 1.3E+02 0.0029 18.0 3.1 19 11-29 89-107 (111)
224 PF05239 PRC: PRC-barrel domai 23.1 1.4E+02 0.0031 16.2 3.7 30 24-53 4-35 (79)
225 PF07719 TPR_2: Tetratricopept 23.0 87 0.0019 13.7 1.9 17 16-32 14-30 (34)
226 PF13181 TPR_8: Tetratricopept 22.9 89 0.0019 13.8 2.0 16 17-32 15-30 (34)
227 PF13007 LZ_Tnp_IS66: Transpos 22.8 62 0.0014 17.9 1.5 15 72-86 61-75 (78)
228 PHA00212 putative transcriptio 22.3 81 0.0017 17.3 1.7 12 19-30 17-28 (63)
229 PRK10562 putative acetyltransf 21.9 1.3E+02 0.0029 18.1 3.0 26 10-36 98-124 (145)
230 TIGR03585 PseH pseudaminic aci 21.3 1.8E+02 0.004 17.4 3.5 29 8-37 109-138 (156)
231 smart00461 WH1 WASP homology r 21.1 1.5E+02 0.0032 17.8 3.0 20 11-30 84-103 (106)
232 PF11098 Chlorosome_CsmC: Chlo 21.0 75 0.0016 20.2 1.6 24 7-30 76-100 (139)
233 PF13174 TPR_6: Tetratricopept 20.1 82 0.0018 13.6 1.4 14 17-30 14-27 (33)
234 COG3603 Uncharacterized conser 20.0 1.3E+02 0.0029 19.2 2.6 25 9-34 102-126 (128)
No 1
>PRK11478 putative lyase; Provisional
Probab=99.27 E-value=4.2e-11 Score=73.71 Aligned_cols=60 Identities=20% Similarity=0.167 Sum_probs=41.9
Q ss_pred CCccceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCC--ceeEEEEecCCCcEEEEEecC
Q 037654 3 VNIGATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFG--EFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 3 ~m~i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~--~~~~~~l~~~~~~~l~L~~~~ 62 (86)
+|++.+++||+|.|+|+++|++||+++|||++..+.... ......+..+++..|+|+...
T Consensus 1 ~~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 62 (129)
T PRK11478 1 MLGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFP 62 (129)
T ss_pred CCCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEec
Confidence 356889999999999999999999999999986432111 001122344456778887644
No 2
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.21 E-value=2e-10 Score=69.73 Aligned_cols=55 Identities=24% Similarity=0.422 Sum_probs=42.1
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeee--CCCCceeEEEEecCCCcEEEEEecC
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEA--PNFGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~--~~~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
+++||+|.|+|+++|++||+++|||++..+ ....+....|+..+++..|+|++..
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 57 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRP 57 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCc
Confidence 478999999999999999999999997533 1112245678887666788888643
No 3
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.16 E-value=2.3e-10 Score=74.43 Aligned_cols=57 Identities=28% Similarity=0.528 Sum_probs=43.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC----C----------------CCceeEEEEecCCCcEEEEEecCC
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAP----N----------------FGEFKVIWLNLPGAFALHLIERNP 63 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~----~----------------~~~~~~~~l~~~~~~~l~L~~~~~ 63 (86)
.+++||+|.|+|+++|++||+++|||++..+. . ......+++..+++..|+|++..+
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~ 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKN 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccC
Confidence 57999999999999999999999999875321 0 011456777776667799998664
No 4
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.09 E-value=1e-09 Score=69.63 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=28.2
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEAP 38 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~ 38 (86)
++.|++|.|+|+++|++||+++|||++..+.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeee
Confidence 6899999999999999999999999986543
No 5
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.06 E-value=6.7e-10 Score=68.03 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=36.2
Q ss_pred CccceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEec
Q 037654 4 NIGATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNL 50 (86)
Q Consensus 4 m~i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~ 50 (86)
|.+.+++|++|.|+|+++|++||+++|||++..+.+ ..+|+..
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~~~~l~~ 44 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG----QSVYLRA 44 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----CeEEEEe
Confidence 678899999999999999999999999999876542 3456654
No 6
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.06 E-value=1.7e-09 Score=65.28 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=41.5
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEecC
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
|.+++||.|.|+|++++++||+++|||+...+.+.. ...++..++ ..+++....
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~~~~~~~~-~~~~l~~~~ 54 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GRKALRFGS-QKINLHPVG 54 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC--CceEEEeCC-EEEEEecCC
Confidence 468999999999999999999999999987654321 345666653 677776543
No 7
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.05 E-value=2.5e-09 Score=67.02 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=40.9
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCC-------------CceeEEEEec-CCCcEEEEEecCC
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEAPNF-------------GEFKVIWLNL-PGAFALHLIERNP 63 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~-------------~~~~~~~l~~-~~~~~l~L~~~~~ 63 (86)
|.+++||+|.|+|+++|++||++ |||++..+... .....+++.. +++..|+|++..+
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~ 71 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHH 71 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecC
Confidence 46899999999999999999999 99987543211 1133455554 2357889987543
No 8
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.05 E-value=1.1e-09 Score=66.11 Aligned_cols=55 Identities=24% Similarity=0.541 Sum_probs=41.0
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCC----CCceeEEEEecCCCcEEEEEecCC
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEAPN----FGEFKVIWLNLPGAFALHLIERNP 63 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~----~~~~~~~~l~~~~~~~l~L~~~~~ 63 (86)
+|+||+|.|+|++++++||+++|||+++.... .......++..+ ...++|+....
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 59 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG-EGHIELFLNPS 59 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEEST-SSCEEEEEEES
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccc-ccceeeeeecc
Confidence 68999999999999999999999999975432 222455667765 45566665443
No 9
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.03 E-value=4.5e-09 Score=63.47 Aligned_cols=57 Identities=26% Similarity=0.346 Sum_probs=40.0
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCC-C-ceeEEEEecCCCcEEEEEecCC
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPNF-G-EFKVIWLNLPGAFALHLIERNP 63 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~-~-~~~~~~l~~~~~~~l~L~~~~~ 63 (86)
.+++||+|.|+|++++++||+++|||++..+... + ..-.+++..+++..++|+....
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~ 60 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPN 60 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCC
Confidence 6899999999999999999999999998654211 1 0112334444456777775443
No 10
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.02 E-value=1.2e-09 Score=64.56 Aligned_cols=54 Identities=35% Similarity=0.650 Sum_probs=41.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEecCC
Q 037654 9 LNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIERNP 63 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~~~ 63 (86)
|+|++|.|+|++++++||+++|||+...+.... ...+|+..++...++|+....
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~i~l~~~~~ 54 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL-FPGAWLYAGDGPQLHLIEEDP 54 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC-CCceEEEeCCCcEEEEEecCC
Confidence 689999999999999999999999987654322 245788876555788876544
No 11
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.01 E-value=3.3e-09 Score=67.67 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=36.2
Q ss_pred CccceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC-C-CCc-eeEEEEecC
Q 037654 4 NIGATLNHISRESSDIRRLADFYKEIFGFEEIEAP-N-FGE-FKVIWLNLP 51 (86)
Q Consensus 4 m~i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~-~-~~~-~~~~~l~~~ 51 (86)
+.+.+++||+|.|+|+++|.+||+++|||++..+. . .+. ...+|+..+
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~ 52 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCS 52 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecC
Confidence 45679999999999999999999999999975442 1 111 235677654
No 12
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.01 E-value=2.6e-09 Score=67.38 Aligned_cols=50 Identities=22% Similarity=0.382 Sum_probs=40.1
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEe
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~ 60 (86)
|.+++||+|.|+|+++|++||+++|||++..+. ...+|+..+ +..+.+..
T Consensus 2 i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~~~~~~-g~~l~l~~ 51 (139)
T PRK04101 2 LKGINHICFSVSNLEKSIEFYEKVLGAKLLVKG----RKTAYFDLN-GLWIALNE 51 (139)
T ss_pred CCcEEEEEEEecCHHHHHHHHHhccCCEEEeec----CeeEEEecC-CeEEEeec
Confidence 679999999999999999999999999987553 245677775 45666543
No 13
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.99 E-value=3.9e-09 Score=66.05 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=38.8
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCC---ceeEEEEecCCCcEEEEEe
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFG---EFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~---~~~~~~l~~~~~~~l~L~~ 60 (86)
|.+++||+|.|+|+++|++||+++|||++..+.+.. .....|+..+ +..|++..
T Consensus 2 i~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~ 58 (131)
T cd08364 2 IEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIG-GLWIAIME 58 (131)
T ss_pred cccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcC-CeEEEEec
Confidence 679999999999999999999999999886553211 0112344444 46677764
No 14
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.99 E-value=2.5e-09 Score=66.31 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=38.6
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCC-cEEEE
Q 037654 5 IGATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGA-FALHL 58 (86)
Q Consensus 5 ~i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~-~~l~L 58 (86)
++.++.||+|.|+|+++|.+||+++|||++..+.+ ..+|+..++. ..+.+
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~----~~~~l~~~~~~~~i~l 53 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA----KATYFRSDARDHTLVY 53 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC----CeEEEEcCCccEEEEE
Confidence 47899999999999999999999999999865432 3567776532 33444
No 15
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=98.98 E-value=2.3e-09 Score=65.88 Aligned_cols=50 Identities=18% Similarity=0.379 Sum_probs=38.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCC-cEEEEE
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGA-FALHLI 59 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~-~~l~L~ 59 (86)
+++.||+|.|+|+++|++||+++|||++..+.. ...+|+..++. ..+.|.
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~~~~~~~~~~~~~~~~l~ 51 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---DGALYLRMDDRAWRIAVH 51 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC---CCeEEEEccCCceEEEEE
Confidence 478999999999999999999999999876532 23567776532 445554
No 16
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.95 E-value=6.6e-09 Score=67.46 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=39.5
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecC--CCcEEEEEec
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLP--GAFALHLIER 61 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~--~~~~l~L~~~ 61 (86)
+++||+|.|+|+++|++||+++|||++..+.. ....|+..+ ++..|+|+..
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~~~~~~~~~~~~~~~l~l~~~ 53 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---DRVRLEEGGGGPGAVVDVLEE 53 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---CEEEEEecCCCCCCEEEEEeC
Confidence 58999999999999999999999999876543 234455543 2577888775
No 17
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=98.95 E-value=7.2e-09 Score=65.13 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=38.1
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEec
Q 037654 9 LNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~ 61 (86)
++|++|.|+|+++|++||+++|||++..+.........++.. ++..|.|...
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~-g~~~l~l~~~ 52 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSEDKASYLLRQ-GDINFVLNSP 52 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCceEEEEEEc-CCEEEEEecC
Confidence 589999999999999999999999987654322123455554 3566776543
No 18
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.95 E-value=6.8e-09 Score=63.89 Aligned_cols=50 Identities=26% Similarity=0.361 Sum_probs=37.5
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEe
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~ 60 (86)
.+++|++|.|+|+++|++||+++|||++....+ ...++..+++..|.+..
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~l~~~~ 52 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPFG----PFAVVKLDNGVSLDFAQ 52 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC----CEEEEEcCCCcEEEEec
Confidence 589999999999999999999999999865321 23444544455566544
No 19
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.94 E-value=6.3e-09 Score=63.00 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=39.6
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCC-CC--ceeEEEEecC---CCcEEEEEecCC
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEAPN-FG--EFKVIWLNLP---GAFALHLIERNP 63 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~-~~--~~~~~~l~~~---~~~~l~L~~~~~ 63 (86)
+++||+|.|+|+++|++||+++|||++..+.. .+ .....++... ++..|+|+....
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 62 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPD 62 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCC
Confidence 57999999999999999999999999865432 11 1223445432 346788876543
No 20
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=98.94 E-value=8.3e-09 Score=67.36 Aligned_cols=55 Identities=22% Similarity=0.348 Sum_probs=40.8
Q ss_pred CccceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC--CCCceeEEEEecCCC-cEEEE
Q 037654 4 NIGATLNHISRESSDIRRLADFYKEIFGFEEIEAP--NFGEFKVIWLNLPGA-FALHL 58 (86)
Q Consensus 4 m~i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~--~~~~~~~~~l~~~~~-~~l~L 58 (86)
|.|.+|+||+|.|+|+++|++||+++|||++..+. ..+.....|+...+. ..+.+
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 59 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAY 59 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEE
Confidence 77899999999999999999999999999986542 112234567776432 34444
No 21
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=98.94 E-value=4.9e-09 Score=63.80 Aligned_cols=55 Identities=27% Similarity=0.462 Sum_probs=43.2
Q ss_pred eEEEEEeCCHHHHHHHHHHhhCCeEeee--CCCCceeEEEEecCCC-cEEEEEecCCC
Q 037654 10 NHISRESSDIRRLADFYKEIFGFEEIEA--PNFGEFKVIWLNLPGA-FALHLIERNPG 64 (86)
Q Consensus 10 ~HI~i~V~Dl~~s~~FY~~vLG~~~~~~--~~~~~~~~~~l~~~~~-~~l~L~~~~~~ 64 (86)
+||+|.|+|++++++||+++||++.... .+..+.+..|+..+++ ..|+|++..+.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~ 58 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDG 58 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESST
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCC
Confidence 7999999999999999999999987532 1233477888888765 78999987654
No 22
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=98.94 E-value=7e-09 Score=69.55 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=34.6
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCC--CCceeEEEEe
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEAPN--FGEFKVIWLN 49 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~--~~~~~~~~l~ 49 (86)
-..++|++|.|+|+++|++||+++|||++..+.. .+.+..+|+.
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~ 70 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLG 70 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEe
Confidence 3479999999999999999999999999876532 2235556654
No 23
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.93 E-value=8.3e-09 Score=62.95 Aligned_cols=52 Identities=23% Similarity=0.399 Sum_probs=40.3
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCC-CcEEEEEecC
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPG-AFALHLIERN 62 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~-~~~l~L~~~~ 62 (86)
++++||+|.|+|++++++||+++|||++..+.+ ..+++..++ ...|.+...+
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~~~l~~~~~~~~l~l~~~~ 53 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD----STAVLGTGGKRPLLVLEEDP 53 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC----CEEEEecCCCeEEEEEEeCC
Confidence 378999999999999999999999999976632 457777654 3456665543
No 24
>PLN02300 lactoylglutathione lyase
Probab=98.91 E-value=1.4e-08 Score=71.28 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=38.6
Q ss_pred CCccceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCC--CCceeEEEEecC
Q 037654 3 VNIGATLNHISRESSDIRRLADFYKEIFGFEEIEAPN--FGEFKVIWLNLP 51 (86)
Q Consensus 3 ~m~i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~--~~~~~~~~l~~~ 51 (86)
-|.|.+++||+|.|+|+++|++||+++|||++..+.. ......+|+..+
T Consensus 19 ~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g 69 (286)
T PLN02300 19 KKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYG 69 (286)
T ss_pred ccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccC
Confidence 3678999999999999999999999999999865432 122346777654
No 25
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=98.90 E-value=7.6e-09 Score=62.32 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=38.5
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEecC
Q 037654 9 LNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
++||+|.|+|+++|++||+++|||++..... .....+++..++...++++...
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 53 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDYAVFSTGGGAVGGLMKAP 53 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCceEEEEeCCccEEEEecCC
Confidence 4899999999999999999999999865542 1124556666544456665443
No 26
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.90 E-value=1.1e-08 Score=64.15 Aligned_cols=51 Identities=24% Similarity=0.388 Sum_probs=38.3
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCC---CcEEEEEe
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPG---AFALHLIE 60 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~---~~~l~L~~ 60 (86)
.+++||+|.|+|+++|++||+++|||++..+.. ...+|+..++ ...|.|..
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~---~~~~~~~~~~~~~~~~i~l~~ 55 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK---GRGAFLRAAGGGDHHNLFLIK 55 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec---CcEEEEECCCCCCCcEEEEec
Confidence 579999999999999999999999999875532 1356777642 23455543
No 27
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=98.90 E-value=8.2e-09 Score=62.76 Aligned_cols=41 Identities=17% Similarity=0.350 Sum_probs=33.7
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecC
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLP 51 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~ 51 (86)
|.+++||.|.|+|+++|++||++ |||++..+.. ..+|+..+
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~----~~~~~~~~ 41 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD----DELYYRGY 41 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC----CeEEEecC
Confidence 57899999999999999999999 9999866532 34677654
No 28
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=98.89 E-value=4.9e-09 Score=67.49 Aligned_cols=44 Identities=27% Similarity=0.413 Sum_probs=34.3
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCC---CCceeEEEEecC
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEAPN---FGEFKVIWLNLP 51 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~---~~~~~~~~l~~~ 51 (86)
+|+||+|.|+|+++|++||+++|||++..+.. .+....+|+..+
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~ 47 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLD 47 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecC
Confidence 47999999999999999999999999864321 122456777764
No 29
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=98.88 E-value=8.9e-09 Score=63.00 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=30.0
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEAP 38 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~ 38 (86)
+.+++||+|.|+|+++|++||+++|||++..+.
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeec
Confidence 578999999999999999999999999986553
No 30
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=98.87 E-value=1.1e-08 Score=61.87 Aligned_cols=53 Identities=23% Similarity=0.506 Sum_probs=39.2
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCC--ceeEEEEecCC---CcEEEEEec
Q 037654 9 LNHISRESSDIRRLADFYKEIFGFEEIEAPNFG--EFKVIWLNLPG---AFALHLIER 61 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~--~~~~~~l~~~~---~~~l~L~~~ 61 (86)
++||+|.|+|++++.+||+++|||++..+.... ....+|+..++ +..|++...
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 58 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYN 58 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEec
Confidence 589999999999999999999999987543221 24556777643 356776543
No 31
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=98.85 E-value=2.8e-08 Score=63.38 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=36.2
Q ss_pred CccceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCC--CceeEEEEecC
Q 037654 4 NIGATLNHISRESSDIRRLADFYKEIFGFEEIEAPNF--GEFKVIWLNLP 51 (86)
Q Consensus 4 m~i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~--~~~~~~~l~~~ 51 (86)
.+.++++||.|.|+|+++|++||+++|||++..+... .....+|+..+
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~ 62 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYG 62 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCC
Confidence 4578999999999999999999999999998654321 11234566543
No 32
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=98.85 E-value=2.5e-08 Score=61.75 Aligned_cols=54 Identities=20% Similarity=0.455 Sum_probs=40.3
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecC--CCcEEEEEecCC
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLP--GAFALHLIERNP 63 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~--~~~~l~L~~~~~ 63 (86)
+++||.|.|+|++++++||+++|||++..+.+. ...+|+..+ +...|.++....
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~l~l~~~~~ 56 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--GGLVFLSRDPDEHHQIALITGRP 56 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--CcEEEEEecCCCceEEEEEecCC
Confidence 589999999999999999999999998755431 245677654 235677765443
No 33
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.84 E-value=1.6e-08 Score=61.49 Aligned_cols=53 Identities=25% Similarity=0.477 Sum_probs=41.4
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCC---CceeEEEEecCCCcEEEEEecC
Q 037654 9 LNHISRESSDIRRLADFYKEIFGFEEIEAPNF---GEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~---~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
++||+|.|+|++++++||+++|||+....... .....+|+..+ +..|+|+...
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~~~~ 56 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG-NVQIELIEPL 56 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC-CEEEEEEEEC
Confidence 58999999999999999999999998654321 22456788874 6778888654
No 34
>PLN02367 lactoylglutathione lyase
Probab=98.84 E-value=3.1e-08 Score=68.72 Aligned_cols=44 Identities=16% Similarity=0.358 Sum_probs=35.7
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCC--CCceeEEEEe
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEAPN--FGEFKVIWLN 49 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~--~~~~~~~~l~ 49 (86)
-..++|++|.|+|+++|++||+++|||++..+.. .+++..+|+.
T Consensus 73 ~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~ 118 (233)
T PLN02367 73 GYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMG 118 (233)
T ss_pred CcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEee
Confidence 4579999999999999999999999999876532 2346777775
No 35
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=98.84 E-value=1.8e-08 Score=61.44 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=40.4
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCC--CCceeEEEEecCCCcEEEEEec
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEAPN--FGEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~--~~~~~~~~l~~~~~~~l~L~~~ 61 (86)
+++|++|.|+|+++|++||+++|||+...... ..+...+|+..+ +..|+|+..
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~ 55 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG-NTKVELLEP 55 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC-CEEEEEEec
Confidence 47999999999999999999999999864321 112456777775 567888753
No 36
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=98.84 E-value=1.5e-08 Score=63.52 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=37.0
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEec
Q 037654 9 LNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~ 61 (86)
|+||+|.|+|++++++||+++|||++..+.. ..+++.++ +..+.+...
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~----~~~~~~~~-~~~l~l~~~ 48 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE----KTAYFTIG-GTWLALNEE 48 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC----ccceEeeC-ceEEEEEcc
Confidence 6899999999999999999999999865432 34566765 466766543
No 37
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.83 E-value=3.6e-08 Score=60.43 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=40.5
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhh---CCeEeeeCCCCceeEEEEecCCCcEEEEEecCC
Q 037654 8 TLNHISRESSDIRRLADFYKEIF---GFEEIEAPNFGEFKVIWLNLPGAFALHLIERNP 63 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vL---G~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~~~ 63 (86)
+|+||+|.|+|++++++||+++| ||++..+.. ....|+...++..|.|....+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~---~~~~~~~~~~~~~i~l~~~~~ 56 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE---DGRSWRAGDGGTYLVLQQADG 56 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec---cCceEEecCCceEEEEEeccc
Confidence 58999999999999999999999 999876542 133555433457788876554
No 38
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=98.83 E-value=2.5e-08 Score=59.97 Aligned_cols=40 Identities=18% Similarity=0.457 Sum_probs=34.4
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecC
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLP 51 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~ 51 (86)
+++|+.|.|+|++++++||+++|||++..+.+ ..+|+..+
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~~~~~~~~ 41 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRDA----GSVYLRCS 41 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeecC----CeEEEecC
Confidence 68999999999999999999999999876542 45788775
No 39
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=98.82 E-value=2.3e-08 Score=64.42 Aligned_cols=45 Identities=20% Similarity=0.421 Sum_probs=34.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCC-----CceeEEEEecC
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPNF-----GEFKVIWLNLP 51 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~-----~~~~~~~l~~~ 51 (86)
.+++||+|.|+|+++|++||+++|||++..+... +....+|+..+
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~ 57 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCN 57 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeC
Confidence 5899999999999999999999999998643211 12356677664
No 40
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=98.81 E-value=3.9e-08 Score=63.72 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=28.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeee
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
.+|+||+|.|+|+++|++||+++|||++...
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~ 32 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEY 32 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEE
Confidence 3799999999999999999999999998643
No 41
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.79 E-value=8.2e-08 Score=58.07 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=39.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEecC
Q 037654 9 LNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
+-||.|.|+|+++|++||+++|||++..+++ ...+++..++...+.++...
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~---~~~~~l~~~~~~~~~l~~~~ 51 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKED---RRLAFFWVGGRGMLLLFDPG 51 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecCC---CceEEEEcCCCcEEEEEecC
Confidence 4589999999999999999999999876432 24577887765667776644
No 42
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.79 E-value=4.3e-08 Score=59.57 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=25.1
Q ss_pred EEEEEeCCHHHHHHHHHHhhCCeEeee
Q 037654 11 HISRESSDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 11 HI~i~V~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
||+|.|+|+++|++||+++|||++...
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRS 28 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeec
Confidence 999999999999999999999998643
No 43
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=98.78 E-value=3.3e-08 Score=59.90 Aligned_cols=42 Identities=19% Similarity=0.474 Sum_probs=34.6
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecC
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLP 51 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~ 51 (86)
+.+|+|+.|.|+|++++++||+++|||+...+.+ ..+|+..+
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~~~~~~~ 42 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GIVYLRAT 42 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CEEEEECC
Confidence 4689999999999999999999999999865432 35677654
No 44
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=98.77 E-value=2.8e-08 Score=69.34 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=38.2
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCC-CcEEEEEe
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPG-AFALHLIE 60 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~-~~~l~L~~ 60 (86)
|.+++||+|.|+|+++|++||+++|||++..+... ...|+++++ +..+.+..
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~~---~~~~~~~~~~~~~~~l~~ 53 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGEN---DALYLRLDSRAHRIAVHP 53 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCCC---ceEEEEcCCCceEEEEEE
Confidence 46899999999999999999999999998654321 234667753 23454443
No 45
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=98.77 E-value=4.3e-08 Score=62.65 Aligned_cols=49 Identities=16% Similarity=0.426 Sum_probs=36.5
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCC-cEEEE
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGA-FALHL 58 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~-~~l~L 58 (86)
.+++||+|.|+|+++|++||+++|||++..... ...+|+..++. ..+.+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~---~~~~~l~~~~~~~~~~l 52 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG---DQMAFLRCNSDHHSIAI 52 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC---CeEEEEECCCCcceEEE
Confidence 489999999999999999999999999864422 13467766532 33444
No 46
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.76 E-value=4.7e-08 Score=59.93 Aligned_cols=46 Identities=30% Similarity=0.447 Sum_probs=35.7
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEE
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHL 58 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L 58 (86)
+++||.|.|+|++++++||+++|||++....+ ..+|+..+ +..+.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~----~~~~~~~~-~~~~~l 46 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD----KGAYLEAG-DLWLCL 46 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC----CceEEecC-CEEEEE
Confidence 58999999999999999999999999865432 24566665 444444
No 47
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=98.73 E-value=7.8e-08 Score=58.56 Aligned_cols=49 Identities=24% Similarity=0.358 Sum_probs=34.5
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEe
Q 037654 9 LNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~ 60 (86)
++||+|.|+|+++|++||+. |||++...... ...+++..+++..|.|..
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~--~~~~~~~~~~~~~l~l~~ 49 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD--EPHVEAVLPGGVRLAWDT 49 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC--CCcEEEEeCCCEEEEEEc
Confidence 58999999999999999975 99998643321 134556655456665543
No 48
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=98.73 E-value=3.3e-08 Score=60.17 Aligned_cols=32 Identities=25% Similarity=0.535 Sum_probs=29.7
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeee
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
+.+++||.|.|+|++++++||+++|||++..+
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEecc
Confidence 67999999999999999999999999998654
No 49
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=98.69 E-value=5.3e-08 Score=68.28 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=31.2
Q ss_pred CCccceeeEEEEEeCCHHHHHHHHHHhhCCeEeee
Q 037654 3 VNIGATLNHISRESSDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 3 ~m~i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
.|.+.+++||+|.|+|+++|++||+++|||++..+
T Consensus 140 ~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~ 174 (303)
T TIGR03211 140 GVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQ 174 (303)
T ss_pred CcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEee
Confidence 35678999999999999999999999999998543
No 50
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.69 E-value=2.5e-08 Score=59.42 Aligned_cols=31 Identities=19% Similarity=0.568 Sum_probs=28.8
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEAP 38 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~ 38 (86)
+++||+|.|+|+++|++||+++|||+...+.
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~ 32 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDT 32 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeec
Confidence 6899999999999999999999999997654
No 51
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=98.67 E-value=1.5e-07 Score=54.67 Aligned_cols=53 Identities=28% Similarity=0.422 Sum_probs=41.3
Q ss_pred EEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEecCCC
Q 037654 11 HISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIERNPG 64 (86)
Q Consensus 11 HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~~~~ 64 (86)
||+|.|+|++++++||+++|||++...........+++..+ +..|++....+.
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~~~ 53 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLG-GTRLELFEGDEP 53 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecC-CceEEEecCCCC
Confidence 89999999999999999999999876643222456677765 578888876553
No 52
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.67 E-value=1.3e-07 Score=56.39 Aligned_cols=51 Identities=29% Similarity=0.366 Sum_probs=34.7
Q ss_pred EEEEEeCCHHHHHHHHHHhhCCeEeeeCC-CCceeEEEEecCC--CcEEEEEec
Q 037654 11 HISRESSDIRRLADFYKEIFGFEEIEAPN-FGEFKVIWLNLPG--AFALHLIER 61 (86)
Q Consensus 11 HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~-~~~~~~~~l~~~~--~~~l~L~~~ 61 (86)
||+|.|+|++++++||+++|||++..+.. .++...+.+...+ ++.|++...
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 54 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAPP 54 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeCC
Confidence 89999999999999999999999876542 1212333333322 355666543
No 53
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.65 E-value=4.3e-07 Score=55.19 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=26.4
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCeEeee
Q 037654 9 LNHISRESSDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
+.|+.|.|+|+++|.+||+++|||+....
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~ 29 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFL 29 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEee
Confidence 47999999999999999999999998643
No 54
>PRK06724 hypothetical protein; Provisional
Probab=98.65 E-value=4.3e-08 Score=61.76 Aligned_cols=34 Identities=24% Similarity=0.477 Sum_probs=27.8
Q ss_pred CCCCccceeeEEEEEeCCHHHHHHHHHHhh---CCeEe
Q 037654 1 MPVNIGATLNHISRESSDIRRLADFYKEIF---GFEEI 35 (86)
Q Consensus 1 ~~~m~i~~i~HI~i~V~Dl~~s~~FY~~vL---G~~~~ 35 (86)
|.-| +.+++||+|.|+|+++|++||+++| |+++.
T Consensus 1 ~~~~-~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 1 MNTL-RAGIHHIEFWVANLEESISFYDMLFSIIGWRKL 37 (128)
T ss_pred CCcc-CcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEe
Confidence 3334 5789999999999999999999966 66653
No 55
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=98.64 E-value=1.6e-07 Score=62.86 Aligned_cols=58 Identities=19% Similarity=0.441 Sum_probs=42.1
Q ss_pred cceeeEEEEEeC--CHHHHHHHHHHhhCCeEeeeCC----CCceeEEEEecC-CCcEEEEEecCC
Q 037654 6 GATLNHISRESS--DIRRLADFYKEIFGFEEIEAPN----FGEFKVIWLNLP-GAFALHLIERNP 63 (86)
Q Consensus 6 i~~i~HI~i~V~--Dl~~s~~FY~~vLG~~~~~~~~----~~~~~~~~l~~~-~~~~l~L~~~~~ 63 (86)
+.+++||++.|+ |++++++||+++|||+...+.. ........+..+ +++.|.|.+...
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~ 65 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPAS 65 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCC
Confidence 368999999999 9999999999999999865432 122334455543 357788876544
No 56
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.64 E-value=7.8e-08 Score=61.42 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=32.1
Q ss_pred eEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecC
Q 037654 10 NHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLP 51 (86)
Q Consensus 10 ~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~ 51 (86)
.||+|.|+|+++|++||+++|||++..+.. ...+|+...
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~---~~~~~l~~~ 39 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE---DRIVFMRCH 39 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC---CEEEEEEcC
Confidence 499999999999999999999999876532 246777754
No 57
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.64 E-value=1.3e-07 Score=56.68 Aligned_cols=45 Identities=29% Similarity=0.521 Sum_probs=34.3
Q ss_pred EEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEe
Q 037654 11 HISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 11 HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~ 60 (86)
||+|.|+|+++|++||+++|||++..+.+ ..+|+..+ +..|.+..
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~----~~~~~~~~-~~~l~~~~ 45 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS----KEAYFELA-GLWICLME 45 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC----ceeEEEec-CeEEEecc
Confidence 89999999999999999999999875542 34566664 45555543
No 58
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=98.59 E-value=3.3e-07 Score=56.95 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=36.5
Q ss_pred eEEEEEeCCHHHHHHHHHHhhCCeEeeeCCC-CceeEEEEecCCC-cEEEEEe
Q 037654 10 NHISRESSDIRRLADFYKEIFGFEEIEAPNF-GEFKVIWLNLPGA-FALHLIE 60 (86)
Q Consensus 10 ~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~-~~~~~~~l~~~~~-~~l~L~~ 60 (86)
+||+|.|+|+++|++||+++|||++...... +....+|+..++. ..|.+..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 53 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFP 53 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEc
Confidence 5999999999999999999999998644221 1135678776542 3455443
No 59
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.58 E-value=4.7e-07 Score=54.77 Aligned_cols=30 Identities=27% Similarity=0.561 Sum_probs=26.9
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEAP 38 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~ 38 (86)
+|+||+|.|+|+++|++||+ +|||++..+.
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~ 31 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG 31 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec
Confidence 68999999999999999997 7999986543
No 60
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.54 E-value=3.3e-07 Score=56.17 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=35.2
Q ss_pred eEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEec
Q 037654 10 NHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 10 ~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~ 61 (86)
.+|+|.|+|+++|++||++ |||+...+.... ...++..+++..|.|+..
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~--~~~~~~~~~~~~l~l~~~ 50 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDE--KAACMVISDNIFVMLLTE 50 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCC--CeEEEEECCceEEEEEcH
Confidence 5899999999999999987 899976432221 234555555577777654
No 61
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.54 E-value=7.8e-07 Score=54.17 Aligned_cols=50 Identities=14% Similarity=0.335 Sum_probs=35.5
Q ss_pred eeEEEEEeCCHHHHHHHHHHh---hCCeEeeeCCCCceeEEEEecC-CCcEEEEEec
Q 037654 9 LNHISRESSDIRRLADFYKEI---FGFEEIEAPNFGEFKVIWLNLP-GAFALHLIER 61 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~v---LG~~~~~~~~~~~~~~~~l~~~-~~~~l~L~~~ 61 (86)
++||+|.|+|+++|++||+++ |||++..+... ..+++..+ ++..+.|...
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~---~~~~~~~~~~~~~~~l~~~ 54 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGP---GAVGYGKGGGGPDFWVTKP 54 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecCC---ceeEeccCCCCceEEEecc
Confidence 589999999999999999999 69998755411 22334433 2466777653
No 62
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=98.52 E-value=5.1e-07 Score=63.02 Aligned_cols=46 Identities=24% Similarity=0.426 Sum_probs=35.0
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCC---C-C-ceeEEEEecC
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEAPN---F-G-EFKVIWLNLP 51 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~---~-~-~~~~~~l~~~ 51 (86)
+.+|+||+|.|+|+++|++||+++|||++..+.. . + ....+|+..+
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~ 190 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCN 190 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEEC
Confidence 4689999999999999999999999999865421 1 1 0135677664
No 63
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.51 E-value=8.2e-07 Score=53.95 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=25.9
Q ss_pred eEEEEEeCCHHHHHHHHHHhhCCeEeeeC
Q 037654 10 NHISRESSDIRRLADFYKEIFGFEEIEAP 38 (86)
Q Consensus 10 ~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~ 38 (86)
-|+.|.|+|+++|.+||+++|||+...+.
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~ 31 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVR 31 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEeccc
Confidence 49999999999999999999999976543
No 64
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.50 E-value=4.4e-07 Score=65.56 Aligned_cols=59 Identities=24% Similarity=0.409 Sum_probs=42.6
Q ss_pred CCccceeeEEEEEeC--CHHHHHHHHHHhhCCeEeeeCC----CCceeEEEEec-CCCcEEEEEec
Q 037654 3 VNIGATLNHISRESS--DIRRLADFYKEIFGFEEIEAPN----FGEFKVIWLNL-PGAFALHLIER 61 (86)
Q Consensus 3 ~m~i~~i~HI~i~V~--Dl~~s~~FY~~vLG~~~~~~~~----~~~~~~~~l~~-~~~~~l~L~~~ 61 (86)
.|.+.+++||+|+|+ |++++++||+++|||+...+.. .......++.. ++.+.|+|.++
T Consensus 153 ~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep 218 (353)
T TIGR01263 153 GVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEP 218 (353)
T ss_pred CCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEecc
Confidence 466889999999999 9999999999999999864432 11122223432 34578888764
No 65
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=98.49 E-value=3.2e-07 Score=63.95 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=30.3
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEAP 38 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~ 38 (86)
|.+++||+|.|+|+++|++||+++|||++..+.
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~ 34 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESD 34 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEec
Confidence 679999999999999999999999999987553
No 66
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=98.49 E-value=6.3e-07 Score=62.85 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=30.0
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEAP 38 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~ 38 (86)
+.+++||+|.|+|+++|++||+++|||++..+.
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~ 34 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRD 34 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeec
Confidence 568999999999999999999999999987553
No 67
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.45 E-value=6.8e-07 Score=53.81 Aligned_cols=47 Identities=26% Similarity=0.473 Sum_probs=36.7
Q ss_pred EEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEecC
Q 037654 12 ISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 12 I~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
|+|.|+|+++|.+||+++|||++..+.. ...+++..+ +..+++...+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~---~~~~~~~~~-~~~~~l~~~~ 48 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN---DGVAFFQLG-GLVLALFPRE 48 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC---CceEEEEcC-CeEEEEecch
Confidence 7899999999999999999999876522 245677774 5678877543
No 68
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=98.45 E-value=8.6e-07 Score=61.78 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=30.6
Q ss_pred CccceeeEEEEEeCCHHHHHHHHHHhhCCeEeee
Q 037654 4 NIGATLNHISRESSDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 4 m~i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
+.+.+++||+|.|+|+++|++||+++|||++..+
T Consensus 132 ~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~ 165 (294)
T TIGR02295 132 VSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEY 165 (294)
T ss_pred ccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEE
Confidence 4567999999999999999999999999998654
No 69
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.45 E-value=1.6e-06 Score=52.09 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=35.2
Q ss_pred EEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEecCC
Q 037654 12 ISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIERNP 63 (86)
Q Consensus 12 I~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~~~ 63 (86)
|.|.|+|+++|++||+++||+++....+ ..+++..+++..+.+.....
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 49 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP----TFALFVLGSGVKLGLWSRHT 49 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC----ceEEEEeCCCcEEEEeeccc
Confidence 6799999999999999999999765421 23445554467777776443
No 70
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.44 E-value=1.6e-06 Score=61.08 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=42.6
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEecCCC
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIERNPG 64 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~~~~ 64 (86)
-+.+.-|.|.|+|++++..||++||||++..+.. ..+.+.+++...|.|.+.+++
T Consensus 8 ~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~----~~v~L~vgg~~LL~L~q~~~a 62 (265)
T COG2514 8 PTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD----GSVTLGVGGTPLLTLEQFPDA 62 (265)
T ss_pred CcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC----ceEEEeeCCEEEEEEEeCCCC
Confidence 3578899999999999999999999999987753 446678876545555554443
No 71
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.43 E-value=1.6e-06 Score=52.40 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=34.1
Q ss_pred EEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCC-cEEEEEe
Q 037654 11 HISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGA-FALHLIE 60 (86)
Q Consensus 11 HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~-~~l~L~~ 60 (86)
+.+|.|+|+++|++||+++|||++..+.+ ..+.+..+++ ..|.+..
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~l~l~~ 50 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD----WYVSLRSPDGGVELAFML 50 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC----cEEEEecCCCceEEEEcc
Confidence 67899999999999999999999876532 2344555443 5666654
No 72
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.41 E-value=5.5e-07 Score=54.90 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=27.1
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEee
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIE 36 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~ 36 (86)
+++|+.|.|+|+++|++||+++|||++..
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~ 30 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVM 30 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEee
Confidence 68999999999999999999999999864
No 73
>PRK10291 glyoxalase I; Provisional
Probab=98.37 E-value=2e-06 Score=53.14 Aligned_cols=39 Identities=15% Similarity=0.411 Sum_probs=29.3
Q ss_pred EEEeCCHHHHHHHHHHhhCCeEeeeCC--CCceeEEEEecC
Q 037654 13 SRESSDIRRLADFYKEIFGFEEIEAPN--FGEFKVIWLNLP 51 (86)
Q Consensus 13 ~i~V~Dl~~s~~FY~~vLG~~~~~~~~--~~~~~~~~l~~~ 51 (86)
+|.|+|+++|++||+++|||++..+.. ......+|+..+
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~ 41 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYG 41 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccC
Confidence 478999999999999999999865432 122456777654
No 74
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=98.34 E-value=3.6e-06 Score=49.94 Aligned_cols=47 Identities=28% Similarity=0.296 Sum_probs=35.3
Q ss_pred EEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEecC
Q 037654 13 SRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 13 ~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
.|.|+|+++|++||+++|||++....+. ...+++..+ +..++|....
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~~--~~~~~~~~~-~~~~~l~~~~ 49 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHPE--PGYAFLSRG-GAQLMLSEHD 49 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcCC--CcEEEEEeC-CEEEEEeccC
Confidence 5899999999999999999998765431 245666664 5778876543
No 75
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=98.29 E-value=4.8e-06 Score=50.78 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=35.1
Q ss_pred EEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEecC
Q 037654 11 HISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 11 HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
...|.|+|+++|++||++ |||+...+... ..+++..+ +..|+|....
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~~~~~~~~-~~~l~l~~~~ 51 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA---GYMILRRG-DLELHFFAHP 51 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC---CEEEEEcC-CEEEEEEecC
Confidence 467999999999999999 99998765431 34556664 5678887643
No 76
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.21 E-value=1.3e-05 Score=48.22 Aligned_cols=49 Identities=29% Similarity=0.272 Sum_probs=34.6
Q ss_pred EEEEeCCHHHHHHHHHHhhCCeEeeeCC--CCceeEEEEecCCCcEEEEEec
Q 037654 12 ISRESSDIRRLADFYKEIFGFEEIEAPN--FGEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 12 I~i~V~Dl~~s~~FY~~vLG~~~~~~~~--~~~~~~~~l~~~~~~~l~L~~~ 61 (86)
+.|.|+|+++|.+||+++||+++..+.. .+....+++..+ +..+.+...
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~ 55 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG-DSVLMLADE 55 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC-CEEEEEecC
Confidence 4689999999999999999999875432 222344556665 456776643
No 77
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.20 E-value=1.4e-05 Score=48.55 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=33.8
Q ss_pred EEEEeCCHHHHHHHHHHhhCCeEeeeC--CCCceeEEEEecCCCcEEEEEe
Q 037654 12 ISRESSDIRRLADFYKEIFGFEEIEAP--NFGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 12 I~i~V~Dl~~s~~FY~~vLG~~~~~~~--~~~~~~~~~l~~~~~~~l~L~~ 60 (86)
-.|.|+|+++|++||+++|||++.... +.+....+.+.++ +..+.+..
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~~ 52 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG-DGGVMVGS 52 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC-CEEEEEec
Confidence 368999999999999999999987543 2222334566765 44565544
No 78
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=98.16 E-value=8.6e-06 Score=51.90 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=35.4
Q ss_pred CccceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEec
Q 037654 4 NIGATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNL 50 (86)
Q Consensus 4 m~i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~ 50 (86)
++...+.|..|.|+|++++++||+++||++.......++...+.+..
T Consensus 5 ~~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~ 51 (127)
T COG3324 5 GEKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPA 51 (127)
T ss_pred ccCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEEC
Confidence 34468999999999999999999999999986553333344455543
No 79
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.13 E-value=2.3e-05 Score=55.23 Aligned_cols=50 Identities=20% Similarity=0.478 Sum_probs=39.8
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEe
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~ 60 (86)
-+.|.||.|.|.|++++.+||+++|||++..+. ....|+..|+ ..-|+..
T Consensus 166 ~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~----~~A~F~a~G~-YHHHia~ 215 (265)
T COG2514 166 GTIIGHVHLKVADLEEAEQFYEDVLGLEVTARG----PSALFLASGD-YHHHLAA 215 (265)
T ss_pred CcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecC----CcceEEecCC-cceeEEE
Confidence 467999999999999999999999999998773 2457888864 4444443
No 80
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=98.13 E-value=1.6e-05 Score=47.64 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=31.4
Q ss_pred EEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCC--CcEEEEEe
Q 037654 11 HISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPG--AFALHLIE 60 (86)
Q Consensus 11 HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~--~~~l~L~~ 60 (86)
+..|.|+|+++|++||+++|||+.....+ ..+++..++ ...+++..
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 50 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDHG----WIATFASPQNMTVQVSLAT 50 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcCC----ceEEEeecCCCCcEEEEec
Confidence 34689999999999999999999864321 234444322 35566653
No 81
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=98.06 E-value=2.3e-05 Score=49.53 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=26.8
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeee
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
-+-|.+|.|+|++++++||.++||+++..+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRs 33 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRS 33 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccc
Confidence 457999999999999999999999998544
No 82
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.05 E-value=2.7e-05 Score=56.31 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=39.2
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC-CCCceeEEEEecCCCcEEEEEecC
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEAP-NFGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~-~~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
+++||.|.|+|++++++||++.|||+..... .........+..| ++.|.|.+..
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~~~~~~~~G-~~~l~L~~~~ 56 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREKASHVLRQG-QINFVLTAPY 56 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCceeEEEEEeC-CEEEEEecCC
Confidence 7899999999999999999999999987652 1111223334554 5778887543
No 83
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.03 E-value=2.1e-05 Score=47.90 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=32.4
Q ss_pred EEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEe
Q 037654 12 ISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 12 I~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~ 60 (86)
..|.|+|+++|++||++ |||++..+.+ ..+++..+ +..+.|..
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~----~~~~l~~~-~~~l~l~~ 47 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND----NLAYFRLG-NCAFYLQD 47 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC----CEEEEEcC-CEEEEeec
Confidence 46889999999999988 9999976542 45778875 45666543
No 84
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.01 E-value=2.1e-05 Score=58.34 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=42.7
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCC-------CCceeEEEEecCC-CcEEEEEecC
Q 037654 6 GATLNHISRESSDIRRLADFYKEIFGFEEIEAPN-------FGEFKVIWLNLPG-AFALHLIERN 62 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~-------~~~~~~~~l~~~~-~~~l~L~~~~ 62 (86)
+.+||||++.|+|++.++.||+++|||+...... ..+.....+..++ .+.|.|.+..
T Consensus 178 l~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~ 242 (398)
T PLN02875 178 LRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPT 242 (398)
T ss_pred cceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCC
Confidence 6789999999999999999999999998864321 1124555666543 4788888764
No 85
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=97.96 E-value=2.1e-05 Score=46.51 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=22.3
Q ss_pred EEeCCHHHHHHHHHHhhCCeEeee
Q 037654 14 RESSDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 14 i~V~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
|.|+|+++|++||+++|||++...
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~ 24 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFD 24 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEE
T ss_pred CccCCHHHHHHHHHHhcCCEEEEe
Confidence 689999999999999999999874
No 86
>PLN02300 lactoylglutathione lyase
Probab=97.84 E-value=0.00016 Score=50.70 Aligned_cols=44 Identities=16% Similarity=0.376 Sum_probs=33.3
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCC--CCceeEEEEec
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPN--FGEFKVIWLNL 50 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~--~~~~~~~~l~~ 50 (86)
..+.|+.|.|+|++++.+||+++|||+...... ..+....++..
T Consensus 153 ~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~ 198 (286)
T PLN02300 153 EPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGY 198 (286)
T ss_pred CcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEec
Confidence 578999999999999999999999999864321 12244455543
No 87
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.79 E-value=5.2e-05 Score=49.65 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=30.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCeEeeeC--CCCceeEEEEecCCCcEEEEEecC
Q 037654 9 LNHISRESSDIRRLADFYKEIFGFEEIEAP--NFGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~--~~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
|||+.+.|+|++++.++|++.|||++.... ...+.....+.++++ .|||+..+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~-YlEli~i~ 55 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDG-YLELIAID 55 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSS-EEEEEEES
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCc-eEEEEEeC
Confidence 799999999999999999889999987542 221244455555655 89999854
No 88
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.0022 Score=42.45 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=41.4
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCce-eEEEEecCCCcEEEEEec
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEF-KVIWLNLPGAFALHLIER 61 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~-~~~~l~~~~~~~l~L~~~ 61 (86)
.+++||||.|+|+.++.+-.++ +|.+....+..+.. ..+|+.-.++..|+|...
T Consensus 114 rGfgHIci~V~di~sac~~lke-kGV~f~Kk~~dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 114 RGFGHICIEVDDINSACERLKE-KGVRFKKKLKDGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CccceEEEEeCCHHHHHHHHHH-hCceeeecCCCccccceeEEECCCCCeEEEeec
Confidence 4899999999999999998887 88886666655544 556766556677887643
No 89
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=97.15 E-value=0.00066 Score=43.30 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=24.3
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeee
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
+.--|+|.|+|+++|++||.. |||+.-..
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq 31 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQ 31 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCC
Confidence 345689999999999999997 99997443
No 90
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=97.14 E-value=0.00057 Score=48.10 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=27.8
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEee
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIE 36 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~ 36 (86)
.+.-|+.+.|.|.+++++||+++|||++..
T Consensus 16 ~r~LH~VfkVgdr~kti~Fyt~vlgMkvLR 45 (299)
T KOG2943|consen 16 RRALHYVFKVGDRAKTIDFYTEVLGMKVLR 45 (299)
T ss_pred hheeeEeEeecchHHHHHHHHHhhcceeee
Confidence 578899999999999999999999999864
No 91
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.00075 Score=47.52 Aligned_cols=54 Identities=9% Similarity=0.245 Sum_probs=36.3
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecC-CCcEEEEEecCC
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLP-GAFALHLIERNP 63 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~-~~~~l~L~~~~~ 63 (86)
.+-.|.|+|.|+++|++||++.|||++.+..+. ...+.+.-+ ++..|+|....+
T Consensus 149 pv~~V~l~VgdL~ks~kyw~~~lgM~ilekeek--~t~~~mgYgd~q~~LElt~~~~ 203 (299)
T KOG2943|consen 149 PVLQVMLNVGDLQKSIKYWEKLLGMKILEKEEK--YTRARMGYGDEQCVLELTYNYD 203 (299)
T ss_pred CeEEEEEEehhHHHHHHHHHHHhCcchhhhhhh--hhhhhhccCCcceEEEEEeccC
Confidence 456799999999999999999999998763221 111222222 246677765443
No 92
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=97.04 E-value=0.0053 Score=37.97 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=33.2
Q ss_pred EEEEe-CCHHHHHHHHHHhhCCeEeeeCC------------CCceeEEEEecCCCcEEEEEec
Q 037654 12 ISRES-SDIRRLADFYKEIFGFEEIEAPN------------FGEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 12 I~i~V-~Dl~~s~~FY~~vLG~~~~~~~~------------~~~~~~~~l~~~~~~~l~L~~~ 61 (86)
..|.+ .|.+++++||+++||+++..... .+..-.+.+.+++ ..|.+...
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g-~~l~~~d~ 64 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGG-QRLMASDG 64 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECC-EEEEEEcC
Confidence 35777 89999999999999999864321 1223456677764 46666543
No 93
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=97.03 E-value=0.00065 Score=49.80 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=24.6
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeE
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEE 34 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~ 34 (86)
..-||+|.|+|+++|++||+.+|||..
T Consensus 247 ~~IfVNLpV~DL~rS~~FYt~LF~~n~ 273 (357)
T PRK01037 247 KTFSVVLEVQDLRRAKKFYSKMFGLEC 273 (357)
T ss_pred ceEEEEeeeCCHHHHHHHHHHHhCCCC
Confidence 345999999999999999999999985
No 94
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=97.02 E-value=0.0058 Score=37.85 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=39.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC--CCCceeEEEEecCCCcEEEEEe
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAP--NFGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~--~~~~~~~~~l~~~~~~~l~L~~ 60 (86)
.++.|+++.|+|++++.+-.++ .|.+....+ ...+.+.+|+.-.++..|+|++
T Consensus 86 ~g~~hia~~v~d~d~~~~~l~~-~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e 140 (142)
T cd08353 86 LGLRRVMFAVDDIDARVARLRK-HGAELVGEVVQYENSYRLCYIRGPEGILIELAE 140 (142)
T ss_pred CCceEEEEEeCCHHHHHHHHHH-CCCceeCCceecCCCeEEEEEECCCCCEEEeee
Confidence 4688999999999999998887 688876432 1122566777766678899886
No 95
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=96.97 E-value=0.0094 Score=39.95 Aligned_cols=60 Identities=13% Similarity=0.325 Sum_probs=44.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCC-ceeEEEEecCCCcEEEEEecCCCCCC
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFG-EFKVIWLNLPGAFALHLIERNPGTKL 67 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~-~~~~~~l~~~~~~~l~L~~~~~~~~~ 67 (86)
.++.|+++.|.|++++.+..++ .|.++...+..+ ....+|+.-.++..|+|++..+...+
T Consensus 120 ~G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~~~~~~ 180 (185)
T PLN03042 120 RGFGHIGITVDDVYKACERFEK-LGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLKRIGGI 180 (185)
T ss_pred CCccEEEEEcCCHHHHHHHHHH-CCCeEEeCCccCCceeEEEEECCCCCEEEEEECCCchhh
Confidence 3799999999999999998876 788876544322 23456766666789999987765433
No 96
>PLN02367 lactoylglutathione lyase
Probab=96.96 E-value=0.0097 Score=41.49 Aligned_cols=58 Identities=17% Similarity=0.381 Sum_probs=44.5
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCc-eeEEEEecCCCcEEEEEecCCCC
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGE-FKVIWLNLPGAFALHLIERNPGT 65 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~-~~~~~l~~~~~~~l~L~~~~~~~ 65 (86)
.+++||+|.|.|++++.+-.++ .|.+++..+..+. ...+|+.-.++..|+|++.....
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~~~~ 226 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLKTIG 226 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeCCccCCceEEEEEECCCCCEEEEEeccccc
Confidence 3799999999999999999876 8999876553321 34567776678899999866543
No 97
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=96.91 E-value=0.0053 Score=38.92 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=27.9
Q ss_pred eEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecC
Q 037654 10 NHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLP 51 (86)
Q Consensus 10 ~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~ 51 (86)
.+=.|.|.|-+...+||+++|||+...+.. ..++|...
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn----a~a~lg~~ 39 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN----ALAILGDQ 39 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET----TEEEEE-T
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc----cEEEecCC
Confidence 356799999999999999999999976542 46677653
No 98
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=96.73 E-value=0.03 Score=34.80 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=42.4
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCC--CceeEEEEecCCCcEEEEEecCC
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPNF--GEFKVIWLNLPGAFALHLIERNP 63 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~--~~~~~~~l~~~~~~~l~L~~~~~ 63 (86)
.++.|+++.|+|++++.+-.++ .|.+++..+.. .+.+.++++-.++..|+++++..
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~ 125 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKG 125 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEeccCCcEEEEEecCC
Confidence 4688999999999998877765 78888755432 33567777777788999998654
No 99
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=96.65 E-value=0.028 Score=36.29 Aligned_cols=62 Identities=18% Similarity=0.324 Sum_probs=40.0
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhh--CCeEeeeCCCCceeEEEEecCCCcEEEEEecCCCCCCC
Q 037654 7 ATLNHISRESSDIRRLADFYKEIF--GFEEIEAPNFGEFKVIWLNLPGAFALHLIERNPGTKLP 68 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vL--G~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~~~~~~~~ 68 (86)
.+++|+++.|.|.+...++|+.+. |.++...........+|+.-.++..|++....+.....
T Consensus 64 ~~l~Hiaf~v~d~~dvd~~~~~L~~~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~~~~~~~~ 127 (157)
T cd08347 64 GTVHHVAFRVPDDEELEAWKERLEALGLPVSGIVDRFYFKSLYFREPGGILFEIATDGPGFTVD 127 (157)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHCCCCcccccccccEEEEEEECCCCcEEEEEECCCCcccc
Confidence 468999999999666666666665 76543222222244567776668899998765444333
No 100
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=96.51 E-value=0.022 Score=34.03 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=37.7
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCC---CCceeEEEEecCC--CcEEEEE
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPN---FGEFKVIWLNLPG--AFALHLI 59 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~---~~~~~~~~l~~~~--~~~l~L~ 59 (86)
.++.|+++.|.|++++.+..++ .|.++...+. .++...+|+.-.+ +..|+++
T Consensus 71 ~g~~h~~f~v~d~~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~ 127 (128)
T cd07249 71 EGLHHIAFEVDDIDAALARLKA-QGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELV 127 (128)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-CCCeeeccCCCccCCCCEEEEEecCCCceEEEEec
Confidence 4688999999999999988876 6888765432 2334566777655 6777775
No 101
>PRK11478 putative lyase; Provisional
Probab=96.41 E-value=0.041 Score=33.24 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=37.5
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC--CCCceeEEEEecCCCcEEEEEe
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAP--NFGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~--~~~~~~~~~l~~~~~~~l~L~~ 60 (86)
.++.|+++.|.|++++.+--++ .|.++.... ...+...+|+.-.++..|++++
T Consensus 74 ~g~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 74 CGLRHLAFSVDDIDAAVAHLES-HNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred CceeEEEEEeCCHHHHHHHHHH-cCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 3678999999999998886665 688865321 1122456777766678888875
No 102
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=96.40 E-value=0.046 Score=33.79 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=40.0
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHh--hCCeEeeeCC---CCceeEEEEecCCCcEEEEEecC
Q 037654 7 ATLNHISRESSDIRRLADFYKEI--FGFEEIEAPN---FGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~v--LG~~~~~~~~---~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
.+++|+++.|.|++...+.|..+ .|.++...+. .++....|+.-.++..|++....
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 57999999999999999999988 5777643321 12123356666667889998543
No 103
>PRK10291 glyoxalase I; Provisional
Probab=96.23 E-value=0.058 Score=32.93 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=38.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC--C-CCceeEEEEecCCCcEEEEEecCC
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAP--N-FGEFKVIWLNLPGAFALHLIERNP 63 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~--~-~~~~~~~~l~~~~~~~l~L~~~~~ 63 (86)
.++.|+++.|.|++++.+--++ .|.++...+ . .+....+|+.-.++..|+|++...
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 3688999999999988777765 788765322 1 222345666656678999998653
No 104
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=96.22 E-value=0.016 Score=38.42 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=18.2
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEe
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEI 35 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~ 35 (86)
.++|..+.|+|+.+|..||.+++|+.+.
T Consensus 22 ~~~~t~~rvkd~~~Sl~fytr~~gm~l~ 49 (170)
T KOG2944|consen 22 LLQQTMLRVKDPTGSLKFYTRVNGMALL 49 (170)
T ss_pred hhhhceeecccchhhhhhhhhhccceee
Confidence 4566666666666666666666666653
No 105
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=0.072 Score=34.29 Aligned_cols=46 Identities=30% Similarity=0.421 Sum_probs=31.7
Q ss_pred EEEeC-CHHHHHHHHHHhhCCeEeeeCCC------------CceeEEEEecCCCcEEEEE
Q 037654 13 SRESS-DIRRLADFYKEIFGFEEIEAPNF------------GEFKVIWLNLPGAFALHLI 59 (86)
Q Consensus 13 ~i~V~-Dl~~s~~FY~~vLG~~~~~~~~~------------~~~~~~~l~~~~~~~l~L~ 59 (86)
.|.++ |.+++++||+++||.++..+-.. +..-.+-|.+++ ..|.+.
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g-~~im~s 63 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGG-STIMLS 63 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECC-EEEEEe
Confidence 57788 99999999999999998654221 224456677763 445443
No 106
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=95.90 E-value=0.074 Score=34.29 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=40.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC------CCCceeEEEEecCCCcEEEEEecCCC
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAP------NFGEFKVIWLNLPGAFALHLIERNPG 64 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~------~~~~~~~~~l~~~~~~~l~L~~~~~~ 64 (86)
.++.|+++.|.|+++..+..++ .|.++.... .......+|+.-.++..|+|+++...
T Consensus 92 ~g~~Hla~~v~dida~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 154 (162)
T TIGR03645 92 TGVFHFCVQDPDVEGLAERIVA-AGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYE 154 (162)
T ss_pred ccceEEEEEcCCHHHHHHHHHH-cCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcChh
Confidence 4688999999999999998887 576543211 11113566777666889999987654
No 107
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=95.88 E-value=0.12 Score=31.53 Aligned_cols=58 Identities=28% Similarity=0.410 Sum_probs=39.8
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhh--CCeEeeeCCCCceeEEEEecCCCcEEEEEecCCC
Q 037654 7 ATLNHISRESSDIRRLADFYKEIF--GFEEIEAPNFGEFKVIWLNLPGAFALHLIERNPG 64 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vL--G~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~~~~ 64 (86)
.++.|+++.|.|.+...++|..+. |.++......+....+++.-.++..++++...+.
T Consensus 64 ~~~~h~~f~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 64 AGLNHIAFEVDSLDDLRDLYERLRAAGITPVWPVDHGNAWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHCCCCccccCCCCceeEEEEECCCCCEEEEEEcCCC
Confidence 478899999999999888888875 6665433222223445555556788999865543
No 108
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=95.78 E-value=0.22 Score=31.45 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=39.2
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHh--hCCeEeeeCC---CCceeEEEEecCCCcEEEEEecC
Q 037654 6 GATLNHISRESSDIRRLADFYKEI--FGFEEIEAPN---FGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~v--LG~~~~~~~~---~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
-.+++|+++.|.|.+...++|+.+ .|.++...+. .+.....|+.-.++..|++....
T Consensus 54 ~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~ 115 (141)
T cd07258 54 SSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGM 115 (141)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCc
Confidence 358999999999988777777776 4776654331 12234457776667888887544
No 109
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=95.76 E-value=0.084 Score=31.16 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=35.0
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC--CCCceeEEEEecCCCcEEEEE
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAP--NFGEFKVIWLNLPGAFALHLI 59 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~--~~~~~~~~~l~~~~~~~l~L~ 59 (86)
.+++|+++.|.|++++.+.-++ .|.++...+ ...+...+++.-.++..++++
T Consensus 71 ~g~~h~~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~ 124 (125)
T cd08352 71 CGLRHLAFSVEDIEAAVKHLKA-KGVEVEPIRVDEFTGKRFTFFYDPDGLPLELY 124 (125)
T ss_pred CCceEEEEEeCCHHHHHHHHHH-cCCccccccccCCCceEEEEEECCCCCEEEec
Confidence 4788999999999997777665 687765432 122234556665566777775
No 110
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=95.58 E-value=0.13 Score=32.34 Aligned_cols=55 Identities=18% Similarity=0.396 Sum_probs=39.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC---CCCceeEEEEecCCCcEEEEEecC
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAP---NFGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~---~~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
.++.|+++.|.|++++.+...+ .|.++...+ ..+....+|+.-.++..++|++..
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRA-LGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 3688999999999999998876 888775433 112233556665667889998755
No 111
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=95.50 E-value=0.15 Score=32.39 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=38.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHh--hCCeEeeeCC---CCceeEEEEecCCCcEEEEEecC
Q 037654 7 ATLNHISRESSDIRRLADFYKEI--FGFEEIEAPN---FGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~v--LG~~~~~~~~---~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
.+++||++.|.|++++.+.|..+ .|.++...+. .+....+|+.-.++..|+|+...
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 57999999999999998777665 5777654332 12123456665667889988543
No 112
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=95.45 E-value=0.086 Score=39.41 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=26.9
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCeEeee
Q 037654 9 LNHISRESSDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
++||.++|.|..++..||+..|||+.+..
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~ 29 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAK 29 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEee
Confidence 68999999999999999999999998754
No 113
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=95.36 E-value=0.026 Score=33.88 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=26.8
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeee
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
.+++||++.|+|++++.+-.++ .|+++..+
T Consensus 67 ~gi~Hia~~v~D~d~~~~~l~~-~G~~~~~~ 96 (109)
T PF13669_consen 67 GGIHHIAFEVDDLDAAIARLEA-QGFRVLDE 96 (109)
T ss_dssp SEEEEEEEEESHHHHHHHHHHH-TTECEEEC
T ss_pred CCEEEEEEEeCCHHHHHHHHHH-CCCEEccc
Confidence 5899999999999999999998 69998654
No 114
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=95.34 E-value=0.02 Score=41.88 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=29.8
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhhCCeEee
Q 037654 5 IGATLNHISRESSDIRRLADFYKEIFGFEEIE 36 (86)
Q Consensus 5 ~i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~ 36 (86)
++.+++||.+.|.|...+..||+..|||+...
T Consensus 14 ~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A 45 (381)
T KOG0638|consen 14 KFLRFHHIEFWVGNAKQAARWYCSGFGFEPLA 45 (381)
T ss_pred ceeeeeEEEEEecCcHHHHHHHHhhcCCcchh
Confidence 47899999999999999999999999999864
No 115
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=95.30 E-value=0.22 Score=31.69 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=39.5
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHh--hCCeEeeeCC---CCceeEEEEecCCCcEEEEEecCC
Q 037654 7 ATLNHISRESSDIRRLADFYKEI--FGFEEIEAPN---FGEFKVIWLNLPGAFALHLIERNP 63 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~v--LG~~~~~~~~---~~~~~~~~l~~~~~~~l~L~~~~~ 63 (86)
.+++|+++.|.|.+...+++..+ .|.++...+. .+....+|+.-.++..|+++....
T Consensus 72 ~g~~Hiaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 72 KRIHHLMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred ceeEEEEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 57899999999988877777665 6877654332 122345666666778899876543
No 116
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=95.13 E-value=0.23 Score=31.31 Aligned_cols=55 Identities=13% Similarity=-0.006 Sum_probs=36.7
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHh--hCCeEeeeCC---CCceeEEEEecCCCcEEEEEec
Q 037654 7 ATLNHISRESSDIRRLADFYKEI--FGFEEIEAPN---FGEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~v--LG~~~~~~~~---~~~~~~~~l~~~~~~~l~L~~~ 61 (86)
.+++|+++.|.|+++..+.+..+ .|.++...+. .+....+|+.-.++..|+|+..
T Consensus 66 ~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 66 GKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 46899999999999877666664 5777654331 1112345666556788999753
No 117
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=95.01 E-value=0.14 Score=30.61 Aligned_cols=53 Identities=30% Similarity=0.445 Sum_probs=34.8
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeee-CCC--CceeEEEEe--cCCCcEEEEEe
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEA-PNF--GEFKVIWLN--LPGAFALHLIE 60 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~-~~~--~~~~~~~l~--~~~~~~l~L~~ 60 (86)
.++.|+++.|.|++++.+..++ .|.+++.. +.. .+...+|+. -.++..|++++
T Consensus 71 ~g~~~i~~~v~di~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 71 GGIHHIAIEVDDIEAALETLKE-KGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CceEEEEEEcCCHHHHHHHHHH-CCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 4678999999999998887765 68887543 221 223455662 23467777753
No 118
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=94.83 E-value=0.27 Score=28.56 Aligned_cols=52 Identities=19% Similarity=0.122 Sum_probs=35.4
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC-CCCceeEEEEecCCCcEEEEE
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAP-NFGEFKVIWLNLPGAFALHLI 59 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~-~~~~~~~~~l~~~~~~~l~L~ 59 (86)
.+..|+++.|.|++++.+--.+ .|+++...+ ........++.-.++..|++.
T Consensus 66 ~~~~~~~~~v~di~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 118 (119)
T cd07263 66 GGTPGLVLATDDIDATYEELKA-RGVEFSEEPREMPYGTVAVFRDPDGNLFVLV 118 (119)
T ss_pred CCceEEEEEehHHHHHHHHHHh-CCCEEeeccccCCCceEEEEECCCCCEEEEe
Confidence 4678999999999998888876 898876543 222123445554456677764
No 119
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=94.82 E-value=0.42 Score=30.13 Aligned_cols=58 Identities=19% Similarity=0.332 Sum_probs=39.3
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhh--CCeEeeeCC---CCceeEEEEecCCCcEEEEEecCCC
Q 037654 7 ATLNHISRESSDIRRLADFYKEIF--GFEEIEAPN---FGEFKVIWLNLPGAFALHLIERNPG 64 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vL--G~~~~~~~~---~~~~~~~~l~~~~~~~l~L~~~~~~ 64 (86)
.+++|+++.|.|++...+++..+- |.++...+. .+....+|+.-.++..|++++....
T Consensus 58 ~~~~hiaf~v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~~ 120 (144)
T cd07239 58 PSLNHVAFEMPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELEQ 120 (144)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCceE
Confidence 468899999999999998888775 555543321 1112345666556788998865443
No 120
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=94.64 E-value=0.47 Score=28.20 Aligned_cols=55 Identities=15% Similarity=0.300 Sum_probs=38.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhh--CCeEeeeCC----CCceeEEEEecCCCcEEEEEec
Q 037654 7 ATLNHISRESSDIRRLADFYKEIF--GFEEIEAPN----FGEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vL--G~~~~~~~~----~~~~~~~~l~~~~~~~l~L~~~ 61 (86)
.+++|+++.|.|.+...++|+++- |.++...+. .+.....|+.-.++..|+++..
T Consensus 57 ~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 57 GGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred CCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 478999999999877777777765 777654321 1112446777667788888763
No 121
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=94.62 E-value=0.45 Score=28.07 Aligned_cols=52 Identities=10% Similarity=0.135 Sum_probs=30.2
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHh--hCCeEeeeCC--CCceeEEEEecCCCcEEEE
Q 037654 7 ATLNHISRESSDIRRLADFYKEI--FGFEEIEAPN--FGEFKVIWLNLPGAFALHL 58 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~v--LG~~~~~~~~--~~~~~~~~l~~~~~~~l~L 58 (86)
.++.|+++.|.|.+...++|+.+ .|.++...+. ..+...+++.-.++..|++
T Consensus 69 ~g~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~ 124 (125)
T cd07241 69 TGWAHLAFSVGSKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEI 124 (125)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEe
Confidence 47799999998766666666665 5777654331 1112223444334556654
No 122
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=94.62 E-value=0.43 Score=28.12 Aligned_cols=51 Identities=18% Similarity=0.349 Sum_probs=34.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCC-CceeEEEEecCCCcEEEE
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPNF-GEFKVIWLNLPGAFALHL 58 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~-~~~~~~~l~~~~~~~l~L 58 (86)
.++.|+++.|.|++++.+-..+ .|.++...+.. .....+|+.-.++..|++
T Consensus 69 ~~~~~i~~~v~did~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~ 120 (121)
T cd07233 69 NGFGHLAFAVDDVYAACERLEE-MGVEVTKPPGDGGMKGIAFIKDPDGYWIEL 120 (121)
T ss_pred CCeEEEEEEeCCHHHHHHHHHH-CCCEEeeCCccCCCceEEEEECCCCCEEEe
Confidence 3678999999999998776664 78887655432 223445555445666665
No 123
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=94.51 E-value=0.05 Score=40.07 Aligned_cols=31 Identities=26% Similarity=0.649 Sum_probs=27.8
Q ss_pred cceeeEEEEEeC--CHHHHHHHHHHhhCCeEee
Q 037654 6 GATLNHISRESS--DIRRLADFYKEIFGFEEIE 36 (86)
Q Consensus 6 i~~i~HI~i~V~--Dl~~s~~FY~~vLG~~~~~ 36 (86)
+..|+|++..|. .++....||+++|||+...
T Consensus 165 ~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~ 197 (363)
T COG3185 165 LTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQ 197 (363)
T ss_pred ceeechhhhhcchhhHHHHHHHHHHHhCcccee
Confidence 468999999997 7999999999999999854
No 124
>PRK10148 hypothetical protein; Provisional
Probab=94.49 E-value=0.39 Score=30.82 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=20.3
Q ss_pred EEEEeC-CHHHHHHHHHHhhCCeEe
Q 037654 12 ISRESS-DIRRLADFYKEIFGFEEI 35 (86)
Q Consensus 12 I~i~V~-Dl~~s~~FY~~vLG~~~~ 35 (86)
.-|..+ |.+++++||+++||.++.
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~ 29 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELL 29 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEE
Confidence 356665 899999999999999875
No 125
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=94.47 E-value=0.63 Score=30.02 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=35.8
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhh--CCeEeeeCC---CCceeEEEEecCCCcEEEEEec
Q 037654 7 ATLNHISRESSDIRRLADFYKEIF--GFEEIEAPN---FGEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vL--G~~~~~~~~---~~~~~~~~l~~~~~~~l~L~~~ 61 (86)
.+++|+++.|.|.+...++|..+- |.++...+. ......+|+.-.++..|+++..
T Consensus 68 ~~~~hiaf~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 68 GRLHHLAYALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CCceEEEEECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 368999999999887777777664 666543321 1112234555556788998876
No 126
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=94.42 E-value=0.59 Score=27.95 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=34.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhh--CCeEeeeCC-----CCceeEEEEecCCCcEEEEEe
Q 037654 7 ATLNHISRESSDIRRLADFYKEIF--GFEEIEAPN-----FGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vL--G~~~~~~~~-----~~~~~~~~l~~~~~~~l~L~~ 60 (86)
.++.|+++.|.|.+...+.++.+. |.++...+. .+....+++.-.++..++++.
T Consensus 67 ~g~~hia~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 67 PGLHHLAFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred cCeeEEEEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 468999999987665556666554 777654332 122345555545577888764
No 127
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=94.22 E-value=0.72 Score=28.10 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=39.2
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHh--hCCeEeeeCC---CCceeEEEEecCCCcEEEEEecCCC
Q 037654 7 ATLNHISRESSDIRRLADFYKEI--FGFEEIEAPN---FGEFKVIWLNLPGAFALHLIERNPG 64 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~v--LG~~~~~~~~---~~~~~~~~l~~~~~~~l~L~~~~~~ 64 (86)
.++.|+++.|.|.+...++|+.+ .|.++...+. .+....+++.-.++..|++......
T Consensus 58 ~~~~hl~~~v~d~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~ 120 (131)
T cd08343 58 PGLHHVAFEVESLDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMYR 120 (131)
T ss_pred CCeeEEEEEcCCHHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCcc
Confidence 57899999999998777777665 4777654332 1223445666566788998865443
No 128
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=93.94 E-value=0.41 Score=28.22 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=29.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhh--CCeEeeeCCCCceeEEEEecCCCcEEEE
Q 037654 7 ATLNHISRESSDIRRLADFYKEIF--GFEEIEAPNFGEFKVIWLNLPGAFALHL 58 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vL--G~~~~~~~~~~~~~~~~l~~~~~~~l~L 58 (86)
.+++|+++.|.|.+...+.|..+. |.++............++.-.++..+++
T Consensus 72 ~~~~hi~f~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~DP~G~~iE~ 125 (126)
T cd08346 72 GQIHHIAFSVPSEASLDAWRERLRAAGVPVSGVVDHFGERSIYFEDPDGLRLEL 125 (126)
T ss_pred CcEEEEEEEcCCHHHHHHHHHHHHHcCCcccceEeecceEEEEEECCCCCEEEe
Confidence 357899999997755555666554 6554322111223444555445566665
No 129
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=93.85 E-value=0.78 Score=27.20 Aligned_cols=54 Identities=20% Similarity=0.163 Sum_probs=37.3
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCC-CCceeEEEEecCCCcEEEEEec
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPN-FGEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~-~~~~~~~~l~~~~~~~l~L~~~ 61 (86)
.+++|+++.|.|.++..+..+ .+|........ ......+|+.-.++..|+|+..
T Consensus 56 ~~~~~~af~v~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 56 ARFVGAAFEAASRADLEKAAA-LPGASVIDDLEAPGGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CcccEEEEEECCHHHHHHHHH-cCCCeeecCCCCCCCceEEEEECCCCCEEEEEec
Confidence 468899999999998888754 57887653321 1113456776666788888754
No 130
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=93.55 E-value=0.9 Score=26.96 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=36.2
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhh--CCeEeeeCCCCceeEEEEecCCCcEEEEEecC
Q 037654 6 GATLNHISRESSDIRRLADFYKEIF--GFEEIEAPNFGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vL--G~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
..++.|+++.|.|.+...++|.++. |.+............+|+.-.++..+++....
T Consensus 62 ~~~~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 62 ATGLYHFAILLPSRADLAAALRRLIELGIPLVGASDHLVSEALYLSDPEGNGIEIYADR 120 (125)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHcCCceeccccccceeEEEEECCCCCEEEEEEec
Confidence 3578899999998777777776665 66543222212124456665667888887543
No 131
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=93.54 E-value=0.036 Score=34.09 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=10.6
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhC
Q 037654 8 TLNHISRESSDIRRLADFYKEIFG 31 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG 31 (86)
.+.-|.|+|.| +++++||+++||
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~ 27 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFG 27 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---
T ss_pred EEEEEEEeCCC-hhHHHHHHhccc
Confidence 56789999999 889999999886
No 132
>PRK06724 hypothetical protein; Provisional
Probab=93.50 E-value=0.99 Score=28.03 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=35.5
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHh--hCCeEeeeCC----C-CceeEEEEecCCCcEEEEEec
Q 037654 7 ATLNHISRESSDIRRLADFYKEI--FGFEEIEAPN----F-GEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~v--LG~~~~~~~~----~-~~~~~~~l~~~~~~~l~L~~~ 61 (86)
.+.+|+++.|.+.+..-++++.+ .|.++...+. . .+...+++.-.++..|++...
T Consensus 62 ~g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 62 LGPRHICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred CCceeEEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 36899999997666666666666 6877654331 1 223445555556788888755
No 133
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=93.35 E-value=0.84 Score=26.92 Aligned_cols=49 Identities=10% Similarity=0.073 Sum_probs=33.8
Q ss_pred EEEEEeCCHHHHHHHHHHhhCCeEeeeCCC--CceeEEEEecCCCcEEEEEe
Q 037654 11 HISRESSDIRRLADFYKEIFGFEEIEAPNF--GEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 11 HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~--~~~~~~~l~~~~~~~l~L~~ 60 (86)
|+++.|.|+++..+..++ .|.++...+.. .+...+++.-.++..+++++
T Consensus 69 ~~~~~v~did~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 69 ILNFEVDDVDAEYERLKA-EGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred EEEEEECCHHHHHHHHHh-cCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 999999999999988887 68876543321 11345566655567777753
No 134
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=93.21 E-value=0.93 Score=26.11 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=34.7
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC---CCCceeEEEEecCCCcEEEEE
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAP---NFGEFKVIWLNLPGAFALHLI 59 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~---~~~~~~~~~l~~~~~~~l~L~ 59 (86)
.+..|+++.|.|+++..+..++ +|.++...+ ..+ ...+++.-.++..|+++
T Consensus 55 ~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 55 GGGFHLCFEVEDVDALYERLKE-LGAEIVTEPRDDPWG-QRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp SSEEEEEEEESHHHHHHHHHHH-TTSEEEEEEEEETTS-EEEEEEE-TTS-EEEEE
T ss_pred CceeEEEEEEcCHHHHHHHHHH-CCCeEeeCCEEcCCC-eEEEEEECCCCCEEEeC
Confidence 4678999999999999998887 799875432 222 34555554456667653
No 135
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=93.00 E-value=1.1 Score=26.19 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=33.1
Q ss_pred ceeeEEEEEeCC---HHHHHHHHHHhhCCeEeeeC--CCCceeEEEEecCCCcEEEEEec
Q 037654 7 ATLNHISRESSD---IRRLADFYKEIFGFEEIEAP--NFGEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 7 ~~i~HI~i~V~D---l~~s~~FY~~vLG~~~~~~~--~~~~~~~~~l~~~~~~~l~L~~~ 61 (86)
.++.|+++.|.| +++..+..++ .|.+....+ .......+++.-.++..++++..
T Consensus 56 ~~~~h~~~~v~~~~~v~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 56 PGVDALGFEVASEEDLEALAAHLEA-AGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CCceeEEEEcCCHHHHHHHHHHHHH-cCCceEEcCccCCCCceEEEEECCCCCEEEEEEc
Confidence 468999999985 5555554544 587765443 22222444555455778888754
No 136
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=92.99 E-value=0.6 Score=26.61 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=31.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCC-CceeEEEEecCCCcEEE
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPNF-GEFKVIWLNLPGAFALH 57 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~-~~~~~~~l~~~~~~~l~ 57 (86)
.+..|+++.|+|++++.+=.++ .|.++...+.. .+...+++.-.++..++
T Consensus 63 ~~~~~~~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~DP~G~~iE 113 (114)
T cd07245 63 GRDDHIAFRVDDLDAFRARLKA-AGVPYTESDVPGDGVRQLFVRDPDGNRIE 113 (114)
T ss_pred cccceEEEEeCCHHHHHHHHHH-cCCCcccccCCCCCccEEEEECCCCCEEe
Confidence 4678999999999998877776 68887654321 11233444433455554
No 137
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=92.72 E-value=0.83 Score=25.57 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=23.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeee
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
.+..|+++.|.|++++.+-..+ .|..+...
T Consensus 60 ~~~~~~~~~v~~~~~~~~~l~~-~g~~~~~~ 89 (112)
T cd06587 60 GGGVHLAFEVDDVDAAYERLKA-AGVEVLGE 89 (112)
T ss_pred CCeeEEEEECCCHHHHHHHHHH-cCCcccCC
Confidence 5688999999999877776665 67776543
No 138
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=92.60 E-value=1.2 Score=26.02 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=34.7
Q ss_pred ceeeEEEEEeCC-HHHHHHHHHHhhCCeEeeeCC--C---CceeEEEEecCCCcEEEEEe
Q 037654 7 ATLNHISRESSD-IRRLADFYKEIFGFEEIEAPN--F---GEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 7 ~~i~HI~i~V~D-l~~s~~FY~~vLG~~~~~~~~--~---~~~~~~~l~~~~~~~l~L~~ 60 (86)
.++.|+++.|.+ ++++.+.+++ .|.++...+. . +....+++.-.++..+++.+
T Consensus 66 ~~~~hi~~~~~~~~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 66 PGSDDLCLITEPPIDELVAHLEA-HGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred CCCceEEEEecccHHHHHHHHHH-CCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 468899999975 9998888777 6887654321 1 11234455545567777754
No 139
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=92.57 E-value=1.3 Score=26.29 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=33.2
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHh--hCCeEeeeCC---CCceeEEEEecCCCcEEEEEec
Q 037654 7 ATLNHISRESSDIRRLADFYKEI--FGFEEIEAPN---FGEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~v--LG~~~~~~~~---~~~~~~~~l~~~~~~~l~L~~~ 61 (86)
.+++|+++.|.+.+...++++.+ .|.++...+. .+....+|+.-.++..|+++..
T Consensus 60 ~~~~hiaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 119 (122)
T cd07265 60 AGLDFMGFKVLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYAD 119 (122)
T ss_pred CCeeEEEEEeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEe
Confidence 36789999998544444444443 6777654321 1112456666556788888754
No 140
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=92.38 E-value=0.26 Score=31.79 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=35.6
Q ss_pred CCCccceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEe
Q 037654 2 PVNIGATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 2 ~~m~i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~ 60 (86)
++|.+.+++||-+.|.|-+++..+++ .|||+.+.+-... ....++-| ++.|.|-.
T Consensus 3 nP~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk--~v~l~rQG-~I~~vln~ 57 (139)
T PF14696_consen 3 NPLGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSK--DVTLYRQG-DINFVLNS 57 (139)
T ss_dssp -TT-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCC--SEEEEEET-TEEEEEEE
T ss_pred CCCCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCc--ceEEEEeC-CEEEEEeC
Confidence 46778999999999999777777775 6999997654322 23333543 56665544
No 141
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=92.37 E-value=1.2 Score=27.55 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=36.5
Q ss_pred ceeeEEEEEeC--CHHHHHHHHHHhhCCeEeeeCC--CCceeEEEEecCCCcEEEEEecC
Q 037654 7 ATLNHISRESS--DIRRLADFYKEIFGFEEIEAPN--FGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 7 ~~i~HI~i~V~--Dl~~s~~FY~~vLG~~~~~~~~--~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
.+++|+++.+. |+++..+..++ .|.++...+. ......+|+.-.++..|+|.+..
T Consensus 62 ~~~~hiaf~v~~~dv~~~~~~l~~-~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 62 QSYTHIAFSIEEEDFDHWYQRLKE-NDVNILPGRERDERDKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred CCeeEEEEEecHHHHHHHHHHHHH-CCceEcCCccccCCCceEEEEECCCCCEEEEEeCC
Confidence 35789999997 77777776665 6887653321 11245667776667889887654
No 142
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=92.00 E-value=1.4 Score=26.99 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=33.2
Q ss_pred eeeEEEEEeCCHHHHHHHHHHh--hCCeEeeeC--CCCceeEEEEecCCCcEEEEEecC
Q 037654 8 TLNHISRESSDIRRLADFYKEI--FGFEEIEAP--NFGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~v--LG~~~~~~~--~~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
+++|+++.|++ +...++|..+ .|.++.... ..+....+|+.-.++..+++....
T Consensus 66 ~~~Hiaf~v~~-~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 66 TYNHIAFKISD-SDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred CceEEEEEcCH-HHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecCC
Confidence 58999999984 4445555555 576654221 122234566665667888887544
No 143
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=91.89 E-value=1.4 Score=25.89 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=31.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhh--CCeEeeeCC-CCceeEEEEecCCCcEEEEEe
Q 037654 7 ATLNHISRESSDIRRLADFYKEIF--GFEEIEAPN-FGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vL--G~~~~~~~~-~~~~~~~~l~~~~~~~l~L~~ 60 (86)
.++.|+++.|.+ +...++|+++. |.++..... ......+++.-.++..+++++
T Consensus 66 ~~~~~~~~~v~~-~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 66 SGPGHFAFAIPA-EELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred CCccEEEEEcCH-HHHHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEec
Confidence 478999999965 55555566654 555543221 112344555555577788764
No 144
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=91.86 E-value=1.6 Score=25.52 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=35.6
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCC--CceeEEEEecCCCcEEEEEec
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEAPNF--GEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~--~~~~~~~l~~~~~~~l~L~~~ 61 (86)
...|+++.|.|++++.+-.++ .|.++...+.. .+...+++.-.++..|+++++
T Consensus 57 ~~~~i~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 57 VVPDLSIEVDDVDAALARAVA-AGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred CCCEEEEEeCCHHHHHHHHHh-cCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 356999999999999887765 78887654321 113445555455678888754
No 145
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=91.58 E-value=1.9 Score=25.88 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=34.8
Q ss_pred eeeEEEEEeC--CHHHHHHHHHHhhCCeEeeeCC---------CCceeEEEEecCCCcEEEEEec
Q 037654 8 TLNHISRESS--DIRRLADFYKEIFGFEEIEAPN---------FGEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 8 ~i~HI~i~V~--Dl~~s~~FY~~vLG~~~~~~~~---------~~~~~~~~l~~~~~~~l~L~~~ 61 (86)
+..|+++.|+ |+++..+..++ .|.+....+. ..+....|+.-.++..|++++.
T Consensus 58 ~~~h~a~~v~~~dl~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 58 PPQHYAFLVSEEEFDRIFARIRE-RGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred CcceEEEEeCHHHHHHHHHHHHH-cCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 4689999887 57777777776 5887643221 1123555666556788998875
No 146
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=91.40 E-value=1.8 Score=25.63 Aligned_cols=52 Identities=12% Similarity=0.224 Sum_probs=33.3
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhh--CCeEeeeCCC-----CceeEEEEecCCCcEEEEE
Q 037654 8 TLNHISRESSDIRRLADFYKEIF--GFEEIEAPNF-----GEFKVIWLNLPGAFALHLI 59 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vL--G~~~~~~~~~-----~~~~~~~l~~~~~~~l~L~ 59 (86)
+..|+++.|.|.+...++|..+. |.++...+.. .....+++.-.++..++++
T Consensus 64 ~~~hi~f~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 64 NGTHVAFAAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CceEEEEECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 46799999999888888887754 5554433211 1123456665567777775
No 147
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=90.92 E-value=2.2 Score=25.37 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=33.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHh--hCCeEeeeC-CCCceeEEEEecCCCcEEEEEe
Q 037654 7 ATLNHISRESSDIRRLADFYKEI--FGFEEIEAP-NFGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~v--LG~~~~~~~-~~~~~~~~~l~~~~~~~l~L~~ 60 (86)
.+++|+++.|.|.+...++++.+ .|.++.... ..+....+|+.-.++..|+++.
T Consensus 61 ~~~~h~af~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 117 (121)
T cd09013 61 AGLGHIAWRASSPEALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYW 117 (121)
T ss_pred CceEEEEEEcCCHHHHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEE
Confidence 47899999999877777777665 466543211 1111234556555678888875
No 148
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=89.60 E-value=2 Score=24.98 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=31.8
Q ss_pred ceeeEEEEEeC--CHHHHHHHHHHhhCCeEeeeC-C-CCceeEEEEecCCCcEEEEEec
Q 037654 7 ATLNHISRESS--DIRRLADFYKEIFGFEEIEAP-N-FGEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 7 ~~i~HI~i~V~--Dl~~s~~FY~~vLG~~~~~~~-~-~~~~~~~~l~~~~~~~l~L~~~ 61 (86)
.+++|+++.|. |+++..+-.++ .|.++.... . ......+|+.-.++..++++..
T Consensus 54 ~~~~hiaf~v~~~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 54 RTYTHIAFQIQSEEFDEYTERLKA-LGVEMKPERPRVQGEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred CCccEEEEEcCHHHHHHHHHHHHH-cCCccCCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 35789999996 45554444444 577764321 1 1113455666556788888753
No 149
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=89.19 E-value=3 Score=24.28 Aligned_cols=52 Identities=13% Similarity=0.010 Sum_probs=34.3
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCC--CCceeEEEEecCCCcEEEEE
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPN--FGEFKVIWLNLPGAFALHLI 59 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~--~~~~~~~~l~~~~~~~l~L~ 59 (86)
....|+++.|+|+++..+-..+ .|.++...+. .+.....|+.-.++..++|+
T Consensus 60 ~~~~~~~f~v~di~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~ 113 (114)
T cd07247 60 PPGWLVYFAVDDVDAAAARVEA-AGGKVLVPPTDIPGVGRFAVFADPEGAVFGLW 113 (114)
T ss_pred CCeEEEEEEeCCHHHHHHHHHH-CCCEEEeCCcccCCcEEEEEEECCCCCEEEeE
Confidence 3567999999999988877766 6887764432 11234455555556677765
No 150
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=88.98 E-value=3.2 Score=24.44 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=33.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHh--hCCeEeeeC---CCCceeEEEEecCCCcEEEEEe
Q 037654 7 ATLNHISRESSDIRRLADFYKEI--FGFEEIEAP---NFGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~v--LG~~~~~~~---~~~~~~~~~l~~~~~~~l~L~~ 60 (86)
.++.|+++.|.+.+...++|+.+ .|.++...+ ..+....+++.-.++..++++.
T Consensus 59 ~~~~hi~~~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 117 (121)
T cd07266 59 AGLGHIAFRVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYA 117 (121)
T ss_pred CceeEEEEECCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEe
Confidence 47899999998777666777665 477764331 1121234444444577888874
No 151
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=88.93 E-value=0.75 Score=30.58 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=25.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeee
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
.++.||++.|+|++++.+-.++ -|.+.+..
T Consensus 82 ~Gv~HIAf~vdDI~~~~~~L~~-~Gv~~l~~ 111 (191)
T cd07250 82 AGVQHIALATDDIFATVAALRA-RGVEFLPI 111 (191)
T ss_pred CceeEEEEECCCHHHHHHHHHH-cCCeeccC
Confidence 5799999999999999998876 68877543
No 152
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.64 E-value=2 Score=30.12 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCC
Q 037654 18 DIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPG 52 (86)
Q Consensus 18 Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~ 52 (86)
|+.+++.||.+.||+++..--+.- ..++|-.++.
T Consensus 146 ~~~e~a~wy~dyLGleie~~hgev-ikfiFTnIdp 179 (246)
T KOG4657|consen 146 DIHEAASWYNDYLGLEIEAGHGEV-IKFIFTNIDP 179 (246)
T ss_pred ccHHHHHHHHHhcCceeeeccCce-EEEEEeccCC
Confidence 678889999999999986432211 4556655533
No 153
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=88.29 E-value=3.2 Score=25.40 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=33.7
Q ss_pred ceeeEEEEEeCC--HHHHHHHHHHhhCCeEeeeC--CCCceeEEEEecCCCcEEEEEecCCC
Q 037654 7 ATLNHISRESSD--IRRLADFYKEIFGFEEIEAP--NFGEFKVIWLNLPGAFALHLIERNPG 64 (86)
Q Consensus 7 ~~i~HI~i~V~D--l~~s~~FY~~vLG~~~~~~~--~~~~~~~~~l~~~~~~~l~L~~~~~~ 64 (86)
.+++|+++.|.+ +++..+-.++ .|.++...+ .......+|+.-.++..|++......
T Consensus 58 ~~~~hiaf~v~~~dld~~~~~l~~-~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~~~ 118 (131)
T cd08363 58 QSYTHIAFTIEDSEFDAFYTRLKE-AGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGTLA 118 (131)
T ss_pred ccceEEEEEecHHHHHHHHHHHHH-cCCcccCCCccccCcceEEEEECCCCCEEEEecCcHH
Confidence 367899999975 5444444443 466654321 11123455666556788999876543
No 154
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=88.20 E-value=0.9 Score=29.45 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=22.6
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhh
Q 037654 6 GATLNHISRESSDIRRLADFYKEIF 30 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vL 30 (86)
..+|.+|.|.++|.+++.++|.++|
T Consensus 151 ~~~i~~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 151 ALGITRVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp TEEEEEEEEEETTHHHHHHHHHHH-
T ss_pred cceEEEEEEEeCCHHHHHHHHHhhC
Confidence 5689999999999999999999976
No 155
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=87.91 E-value=4.1 Score=24.28 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=33.9
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhh--CCeEeeeCC-CCceeEEEEecCCCcEEEEE
Q 037654 8 TLNHISRESSDIRRLADFYKEIF--GFEEIEAPN-FGEFKVIWLNLPGAFALHLI 59 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vL--G~~~~~~~~-~~~~~~~~l~~~~~~~l~L~ 59 (86)
+..|+++.|.|.+...++|+.+. |.++...+. ......+++.-.++..|+++
T Consensus 68 ~~~~l~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~ 122 (124)
T cd09012 68 TEVLISLSADSREEVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVL 122 (124)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEE
Confidence 35699999999888888888875 666554332 11123345555556777775
No 156
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=87.28 E-value=3.6 Score=24.49 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=33.6
Q ss_pred ceeeEEEEEeC--CHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEecCC
Q 037654 7 ATLNHISRESS--DIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIERNP 63 (86)
Q Consensus 7 ~~i~HI~i~V~--Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~~~~ 63 (86)
.++.|+++.+. |+++..+-.++ .|.++...+... ....|+.-.++..++++...-
T Consensus 56 ~~~~hi~f~v~~~dl~~~~~~l~~-~G~~~~~~~~~~-~~~~~f~DPdG~~ie~~~~~~ 112 (121)
T cd07244 56 KDYTHYAFSVSEEDFASLKEKLRQ-AGVKEWKENTSE-GDSFYFLDPDGHKLELHVGSL 112 (121)
T ss_pred CCeeeEEEEeCHHHHHHHHHHHHH-cCCcccCCCCCC-ccEEEEECCCCCEEEEEeCCH
Confidence 46889999994 45555555544 477654332211 245566655678888886543
No 157
>PF15067 FAM124: FAM124 family
Probab=87.15 E-value=2 Score=30.14 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=23.7
Q ss_pred eeEEEEEeC--CHHHHHHHHHHhhCCeEee
Q 037654 9 LNHISRESS--DIRRLADFYKEIFGFEEIE 36 (86)
Q Consensus 9 i~HI~i~V~--Dl~~s~~FY~~vLG~~~~~ 36 (86)
+--++|+|+ |.+.+++||+-+|+=+...
T Consensus 129 ilRftly~~~~N~~d~vr~Yelil~~~~~~ 158 (236)
T PF15067_consen 129 ILRFTLYCSFDNYEDMVRFYELILQREPTQ 158 (236)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHhccCcce
Confidence 445789998 9999999999999988743
No 158
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=86.14 E-value=5.1 Score=23.66 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=33.3
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC---CCCceeEEEEecCCCcEEEEEe
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEAP---NFGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~---~~~~~~~~~l~~~~~~~l~L~~ 60 (86)
+..|+++.|.|+++..+--++.=|.+.+..+ ..+ .+.+|+.=.++..|++.+
T Consensus 64 ~~~~l~~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g-~r~~~~~DPdGn~iei~~ 118 (120)
T cd09011 64 NNFELYFEEEDFDAFLDKLKRYDNIEYVHPIKEHPWG-QRVVRFYDPDKHIIEVGE 118 (120)
T ss_pred CceEEEEEehhhHHHHHHHHhcCCcEEecCcccCCCc-cEEEEEECCCCCEEEEec
Confidence 4569999999999998888773233444332 223 345566655567777754
No 159
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=85.43 E-value=5.4 Score=23.22 Aligned_cols=53 Identities=11% Similarity=-0.039 Sum_probs=33.5
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCC--CCceeEEEEecCCCcEEEEEe
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPN--FGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~--~~~~~~~~l~~~~~~~l~L~~ 60 (86)
.+..|+++.|.|++++.+-..+ .|.++...+. ..+...+|+.-.++..++|.+
T Consensus 67 ~~~~~~~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 67 GTPVSLHLYVEDVDATFARAVA-AGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-CCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 3567999999999986665544 5887754331 122445666655567777654
No 160
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=85.28 E-value=7.4 Score=24.73 Aligned_cols=56 Identities=13% Similarity=0.305 Sum_probs=34.3
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHh--hCCeE-e-eeCC---CCceeEEEEecCCCcEEEEEecC
Q 037654 7 ATLNHISRESSDIRRLADFYKEI--FGFEE-I-EAPN---FGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~v--LG~~~-~-~~~~---~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
.+++|+++.|.|.+...+.+..+ .|... . ..+. ..+...+|+.-.++..|+++...
T Consensus 62 ~~~~Hiaf~v~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 62 PRLHHVAFWVPEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 36889999999877777766655 35542 1 1121 11123456665667889987533
No 161
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=84.75 E-value=6 Score=23.22 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=31.2
Q ss_pred eEEEEEeCCHHHHHHHHHHhhCCeEeeeC---CCCceeEEEEecCCCcEEEEEe
Q 037654 10 NHISRESSDIRRLADFYKEIFGFEEIEAP---NFGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 10 ~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~---~~~~~~~~~l~~~~~~~l~L~~ 60 (86)
-|++|.|+|++++.+.-.+ .|.++...+ ..+ ....++.-.++..+++.+
T Consensus 73 ~~~~~~v~di~~~~~~l~~-~G~~~~~~~~~~~~g-~~~~~~~DPdG~~~~~~~ 124 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVE-AGAVLVSEPKEKPWG-QTVAYVRDINGFLIELCS 124 (125)
T ss_pred EEEEEEcCCHHHHHHHHHH-cCCEeccCCccCCCC-cEEEEEECCCCCEEEEec
Confidence 4899999999999777765 588765433 122 233444444456676654
No 162
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=84.67 E-value=6 Score=23.16 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=32.8
Q ss_pred eeeEEEEE--eCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEecCCCcEEEEEe
Q 037654 8 TLNHISRE--SSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 8 ~i~HI~i~--V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~~~~~~l~L~~ 60 (86)
+++|+++. +.|+++..+..++ .|.++...+.......+|+.-.++..++|..
T Consensus 55 ~~~~~~~~~~~~d~~~~~~~l~~-~Gi~~~~~~~~~~~~~~~~~DP~Gn~iel~~ 108 (112)
T cd08344 55 RLAYLSFGIFEDDFAAFARHLEA-AGVALAAAPPGADPDGVWFRDPDGNLLQVKV 108 (112)
T ss_pred ceeeEEEEeEhhhHHHHHHHHHH-cCCceecCCCcCCCCEEEEECCCCCEEEEec
Confidence 45665554 5789998888876 6988754432111234566655677788764
No 163
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=84.04 E-value=6.4 Score=22.97 Aligned_cols=54 Identities=11% Similarity=0.081 Sum_probs=33.3
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhh--CCeEeeeCC----CCceeEEEEecCCCcEEEEEec
Q 037654 8 TLNHISRESSDIRRLADFYKEIF--GFEEIEAPN----FGEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vL--G~~~~~~~~----~~~~~~~~l~~~~~~~l~L~~~ 61 (86)
++.|+++.|.|.+...++|+.+. |.+....+. ..+...+++.-.++..|+|+..
T Consensus 58 ~~~~~~~~v~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 58 RLDVVSFSVASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEec
Confidence 57899999987666666766554 777653321 1112344555455678888754
No 164
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=83.23 E-value=7.4 Score=23.10 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=35.3
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHh--hCCeEeeeC-----CCCceeEEEEecCCCcEEEEEec
Q 037654 7 ATLNHISRESSDIRRLADFYKEI--FGFEEIEAP-----NFGEFKVIWLNLPGAFALHLIER 61 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~v--LG~~~~~~~-----~~~~~~~~~l~~~~~~~l~L~~~ 61 (86)
.++.|+++.|.+.+...+++..+ .|.++...+ ..+....+|+.-.++..|+++..
T Consensus 56 ~~~~~~~f~v~~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 56 DDLAYAGWEVADEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred CceeEEEEEECCHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 46889999998766555666554 677765432 11212456776666788888754
No 165
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=82.26 E-value=7.2 Score=22.26 Aligned_cols=52 Identities=15% Similarity=0.072 Sum_probs=32.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCe-EeeeCC--CCceeEEEEecCCCcEEEEE
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFE-EIEAPN--FGEFKVIWLNLPGAFALHLI 59 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~-~~~~~~--~~~~~~~~l~~~~~~~l~L~ 59 (86)
.+-.|+++.|.|+++..+-.++ +|.+ +...+. ..+...+++.-.++..+++.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~ 111 (112)
T cd08349 57 GRGGSVYIEVEDVDALYAELKA-KGADLIVYPPEDQPWGMREFAVRDPDGNLLRFG 111 (112)
T ss_pred CCcEEEEEEeCCHHHHHHHHHH-cCCcceecCccCCCcccEEEEEECCCCCEEEec
Confidence 3556899999999998888766 7887 332221 11224455554456677764
No 166
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=81.64 E-value=0.8 Score=33.73 Aligned_cols=34 Identities=12% Similarity=0.337 Sum_probs=29.9
Q ss_pred CccceeeEEEEEeC--CHHHHHHHHHHhhCCeEeee
Q 037654 4 NIGATLNHISRESS--DIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 4 m~i~~i~HI~i~V~--Dl~~s~~FY~~vLG~~~~~~ 37 (86)
+.+..++|+...++ .++.+.+||.+.|||...+.
T Consensus 174 ~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfws 209 (381)
T KOG0638|consen 174 GGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWS 209 (381)
T ss_pred cceeehhhhhccCCcccchHHHHHHHHhhccccccc
Confidence 56789999999999 58999999999999987543
No 167
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=81.11 E-value=9.5 Score=22.90 Aligned_cols=55 Identities=18% Similarity=0.124 Sum_probs=32.1
Q ss_pred eeeEEEEEeCCHHHHHHHHHHh--hCCeEeeeCC-----CCceeEEEEecCCCcEEEEEecC
Q 037654 8 TLNHISRESSDIRRLADFYKEI--FGFEEIEAPN-----FGEFKVIWLNLPGAFALHLIERN 62 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~v--LG~~~~~~~~-----~~~~~~~~l~~~~~~~l~L~~~~ 62 (86)
+..|+++.|.|.+...+.++.+ .|.++...+. .+....+++.-.++..|+++..+
T Consensus 59 ~~~~iaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 59 AEQASGFELRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 5679999998744444444443 5776543221 11123445565567788887654
No 168
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=79.93 E-value=2.5 Score=26.03 Aligned_cols=43 Identities=26% Similarity=0.362 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHhhCCeEee---e-CC-----CCceeEEEEecCCCcEEEEEe
Q 037654 17 SDIRRLADFYKEIFGFEEIE---A-PN-----FGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 17 ~Dl~~s~~FY~~vLG~~~~~---~-~~-----~~~~~~~~l~~~~~~~l~L~~ 60 (86)
.+.+++.+||+++||-..+. + ++ .+.+-.+.|.++ +..|....
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~-g~~lm~~D 62 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG-GQKLMASD 62 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET-TEEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC-CeEEEEEC
Confidence 58999999999999853321 1 11 123456677885 45555443
No 169
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=79.87 E-value=2.7 Score=27.57 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=23.0
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCeE
Q 037654 9 LNHISRESSDIRRLADFYKEIFGFEE 34 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~vLG~~~ 34 (86)
+|||+++|.+.+.+.+|.+..+-.-.
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~ 27 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGE 27 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhch
Confidence 69999999999999999999886543
No 170
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=79.85 E-value=3.1 Score=28.17 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=22.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeE
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEE 34 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~ 34 (86)
..+|||+++|.+.+.+.++-+..+-.-.
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~ 60 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGE 60 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhCh
Confidence 4789999999999999999999986654
No 171
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=78.11 E-value=0.7 Score=24.43 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=20.7
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhh
Q 037654 6 GATLNHISRESSDIRRLADFYKEIF 30 (86)
Q Consensus 6 i~~i~HI~i~V~Dl~~s~~FY~~vL 30 (86)
|--++-++|.+++.+++.+||+..|
T Consensus 9 igp~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 9 IGPVDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred cCccccCCCccccccchhHHHHHHH
Confidence 3456677888899999999999976
No 172
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=75.84 E-value=13 Score=21.50 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=31.4
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHh--hCCeEeeeC---CCCceeEEEEecCCCcEEEEE
Q 037654 7 ATLNHISRESSDIRRLADFYKEI--FGFEEIEAP---NFGEFKVIWLNLPGAFALHLI 59 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~v--LG~~~~~~~---~~~~~~~~~l~~~~~~~l~L~ 59 (86)
.+..|+++.|.|.+...+.|..+ .|.++...+ +.+ ...|+.-.++..++++
T Consensus 58 ~~~~~~~~~v~~~~~~~~~~~~~~~~g~~v~~~~~~~~~g--~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 58 GGGSELAFMVDDGAAVDALYAEWQAKGVKIIQEPTEMDFG--YTFVALDPDGHRLRVF 113 (114)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHHCCCeEecCccccCCc--cEEEEECCCCCEEEee
Confidence 36789999999866666666654 566665432 222 3345554456666664
No 173
>PRK11700 hypothetical protein; Provisional
Probab=75.78 E-value=4 Score=27.71 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=24.0
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeE
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEE 34 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~ 34 (86)
..+|||+++|.+.+.+.+|.+..+-.-.
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~ 65 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGE 65 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhch
Confidence 4689999999999999999999875543
No 174
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=72.72 E-value=17 Score=21.40 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=31.6
Q ss_pred eEEEEEeCCHHHHHHHHHHhhCCeE-------eeeCC--CCceeEEEEecCCCcEEEEEe
Q 037654 10 NHISRESSDIRRLADFYKEIFGFEE-------IEAPN--FGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 10 ~HI~i~V~Dl~~s~~FY~~vLG~~~-------~~~~~--~~~~~~~~l~~~~~~~l~L~~ 60 (86)
.|+++.|.|+++..+--++ .|.+. ...+. ..+.+.+|+.=.++..|++.+
T Consensus 60 ~~~~~~v~dvd~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~ 118 (120)
T cd08350 60 FGCCLRLPDVAALHAEFRA-AGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQ 118 (120)
T ss_pred ceEEEEeCCHHHHHHHHHH-hCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeec
Confidence 4789999999998887766 66652 11111 112445566655567788765
No 175
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=69.69 E-value=19 Score=20.70 Aligned_cols=51 Identities=24% Similarity=0.359 Sum_probs=30.2
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhh--CCeEeeeC---CCCceeEEEEecCCCcEEEE
Q 037654 8 TLNHISRESSDIRRLADFYKEIF--GFEEIEAP---NFGEFKVIWLNLPGAFALHL 58 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vL--G~~~~~~~---~~~~~~~~~l~~~~~~~l~L 58 (86)
++.|+++.+.+.+...++|+.+- |.++...+ ..+.....|+.-.++..+++
T Consensus 73 ~~~~i~~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 73 GGHHIAFLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred cceeEEEEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 35788888888888777777764 76765432 22222323344445666654
No 176
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=68.50 E-value=21 Score=20.86 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=31.3
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCC---CCceeEEEEecCCCcEEEEE
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEAPN---FGEFKVIWLNLPGAFALHLI 59 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~---~~~~~~~~l~~~~~~~l~L~ 59 (86)
+-.|+++.|.|++++.+=..+ .|.++...+. ++ ....++.-.++..++|.
T Consensus 68 ~~~~~~~~v~d~d~~~~~l~~-~G~~v~~~~~~~~~g-~~~~~~~DPdG~~~~l~ 120 (122)
T cd08355 68 GTQGVYVVVDDVDAHYERARA-AGAEILREPTDTPYG-SREFTARDPEGNLWTFG 120 (122)
T ss_pred ceEEEEEEECCHHHHHHHHHH-CCCEEeeCccccCCC-cEEEEEECCCCCEEEEe
Confidence 456899999999777554443 5777764432 22 34455665556667664
No 177
>PF02952 Fucose_iso_C: L-fucose isomerase, C-terminal domain; InterPro: IPR015888 L-fucose isomerase (5.3.1.25 from EC) converts the aldose L-fucose into the corresponding ketose L-fuculose during the first step in fucose metabolism using Mn2+ as a cofactor. The enzyme is a hexamer, forming the largest structurally known ketol isomerase, and has no sequence or structural similarity with other ketol isomerases. The structure was determined by X-ray crystallography at 2.5 A resolution []. This entry represents the C-terminal domain of L-fucose isomerase.; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 1FUI_E 3A9R_A 3A9T_C 3A9S_C.
Probab=65.81 E-value=12 Score=23.48 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=21.1
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCeEe
Q 037654 9 LNHISRESSDIRRLADFYKEIFGFEEI 35 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~vLG~~~~ 35 (86)
-+|+++...|..+..+-..++||+++.
T Consensus 113 ~hH~~~~~G~~~~~l~~~~~~lgi~v~ 139 (142)
T PF02952_consen 113 AHHVALVYGDYAEELKELAKYLGIEVV 139 (142)
T ss_dssp SSEEEEEES--HHHHHHHHHHHT--EE
T ss_pred CCeEEEEcCcHHHHHHHHHHHcCCEEE
Confidence 589999999999999999999999875
No 178
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=57.06 E-value=12 Score=17.85 Aligned_cols=19 Identities=11% Similarity=0.520 Sum_probs=14.5
Q ss_pred EeCCHHHHHHHHHHhhCCe
Q 037654 15 ESSDIRRLADFYKEIFGFE 33 (86)
Q Consensus 15 ~V~Dl~~s~~FY~~vLG~~ 33 (86)
...|.++++++|++.|.+.
T Consensus 11 ~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HCT-HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 3568999999999988554
No 179
>PTZ00330 acetyltransferase; Provisional
Probab=56.76 E-value=21 Score=21.54 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=18.8
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEee
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIE 36 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~ 36 (86)
++..+.+.+. ..|.+||+. +||+...
T Consensus 115 ~~~~l~l~~n--~~a~~~y~k-~GF~~~~ 140 (147)
T PTZ00330 115 GCYKVILDCT--EDMVAFYKK-LGFRACE 140 (147)
T ss_pred CCCEEEEecC--hHHHHHHHH-CCCEEec
Confidence 3455666654 579999986 9999764
No 180
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=53.68 E-value=35 Score=19.57 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=15.6
Q ss_pred EEeCCHHHHHHHHHHhhCCeEee
Q 037654 14 RESSDIRRLADFYKEIFGFEEIE 36 (86)
Q Consensus 14 i~V~Dl~~s~~FY~~vLG~~~~~ 36 (86)
....|=..|.++|+. |||+...
T Consensus 60 ~v~~~N~~s~~ly~k-lGf~~~~ 81 (86)
T PF08445_consen 60 YVDADNEASIRLYEK-LGFREIE 81 (86)
T ss_dssp EEETT-HHHHHHHHH-CT-EEEE
T ss_pred EEECCCHHHHHHHHH-cCCEEEE
Confidence 344577889999997 9999864
No 181
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=53.23 E-value=19 Score=19.39 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=18.9
Q ss_pred ceeeEEEEEeC-CHHHHHHHHHHhhCCe
Q 037654 7 ATLNHISRESS-DIRRLADFYKEIFGFE 33 (86)
Q Consensus 7 ~~i~HI~i~V~-Dl~~s~~FY~~vLG~~ 33 (86)
.++.++.+.|. +-..+.+||++ +||+
T Consensus 57 ~g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 57 RGIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TTESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred cCccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 35677777775 55569999996 7775
No 182
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=51.57 E-value=47 Score=19.28 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=29.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHh--hCCeEeeeCC---CCceeEEEEecCCCcEEEEE
Q 037654 9 LNHISRESSDIRRLADFYKEI--FGFEEIEAPN---FGEFKVIWLNLPGAFALHLI 59 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~v--LG~~~~~~~~---~~~~~~~~l~~~~~~~l~L~ 59 (86)
-.|+++.|.+.+...+.|+.+ .|.++...+. .+ ...++++-.++..++|+
T Consensus 67 ~~~l~~~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 67 RIALAFLCETPAEVDALYAELVGAGYPGHKEPWDAPWG-QRYAIVKDPDGNLVDLF 121 (122)
T ss_pred cEEEEEEcCCHHHHHHHHHHHHHCCCCcCCCCccCCCC-CEEEEEECCCCCEEEEe
Confidence 458889888666666666665 4766543321 22 24455655556677764
No 183
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=47.31 E-value=1e+02 Score=23.10 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=25.1
Q ss_pred CccceeeEEEEEeCCHHHHHHHHHHhhCCeEeee
Q 037654 4 NIGATLNHISRESSDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 4 m~i~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
|-..++++|-++|.|.+....=|-..|||.....
T Consensus 18 ~~~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~ 51 (363)
T COG3185 18 EGTDGFEFVEFAVPDPQEALGALLGQLGFTAVAK 51 (363)
T ss_pred CCCCceeEEEEecCCHHHHHHHHHHHhCcccccc
Confidence 3367999999999999444444445699998644
No 184
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=46.69 E-value=25 Score=21.10 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=19.9
Q ss_pred eeeEEEEEeC-CHHHHHHHHHHhhCCeEe
Q 037654 8 TLNHISRESS-DIRRLADFYKEIFGFEEI 35 (86)
Q Consensus 8 ~i~HI~i~V~-Dl~~s~~FY~~vLG~~~~ 35 (86)
+...+.|.+. +-..+.+||++ +||...
T Consensus 109 ~~~~i~l~~~~~n~~a~~fY~~-~Gf~~~ 136 (144)
T PRK10146 109 GAEMTELSTNVKRHDAHRFYLR-EGYEQS 136 (144)
T ss_pred CCcEEEEecCCCchHHHHHHHH-cCCchh
Confidence 5666777764 44589999998 999764
No 185
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=45.87 E-value=32 Score=21.14 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=17.9
Q ss_pred EEEEEeCCHHHHHHHHHHhh
Q 037654 11 HISRESSDIRRLADFYKEIF 30 (86)
Q Consensus 11 HI~i~V~Dl~~s~~FY~~vL 30 (86)
.++|.-.|.++|.+||+.+.
T Consensus 83 ~~GL~Fade~EA~~F~k~v~ 102 (105)
T cd01205 83 VVGLNFADETEAAEFRKKVL 102 (105)
T ss_pred EEEEEECCHHHHHHHHHHHH
Confidence 57899999999999999874
No 186
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=45.78 E-value=37 Score=21.07 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=22.0
Q ss_pred eEEEEEeC-CHHHHHHHHHHhhCCeEeee
Q 037654 10 NHISRESS-DIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 10 ~HI~i~V~-Dl~~s~~FY~~vLG~~~~~~ 37 (86)
..+.|.|+ |=+.++.||++ +||++...
T Consensus 127 ~~~~L~V~~~N~~Ai~lY~~-~GF~~~~~ 154 (177)
T COG0456 127 DKIVLEVRESNEAAIGLYRK-LGFEVVKI 154 (177)
T ss_pred ceEEEEEecCChHHHHHHHH-cCCEEEee
Confidence 67888886 55699999998 99998644
No 187
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.92 E-value=37 Score=22.95 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=20.4
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCC
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGF 32 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~ 32 (86)
..+|||+|.|.+.+.+..|-+..+-.
T Consensus 38 ~~~DHIaLRvh~~qtAk~wr~~~lqc 63 (185)
T COG3102 38 YTADHIALRVHQEQTAKRWRRGLLQC 63 (185)
T ss_pred cccceeEEEeCcHHHHHHHHHHHHHH
Confidence 57899999999988887776655533
No 188
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=40.89 E-value=56 Score=19.84 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=21.6
Q ss_pred eeeEEEEEeC-CHHHHHHHHHHhhCCeEeee
Q 037654 8 TLNHISRESS-DIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 8 ~i~HI~i~V~-Dl~~s~~FY~~vLG~~~~~~ 37 (86)
+++.+.+.|. +=.+|++||+. +||+....
T Consensus 112 ~~~~i~l~v~~~N~~a~~~y~k-~GF~~~g~ 141 (162)
T PRK10140 112 RVDRIELTVFVDNAPAIKVYKK-YGFEIEGT 141 (162)
T ss_pred CccEEEEEEEcCCHHHHHHHHH-CCCEEEee
Confidence 5667777774 45678999985 99997644
No 189
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=40.78 E-value=33 Score=24.89 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=21.2
Q ss_pred ceeeEEEEEe------CCHHHHHHHHHHhhCCeEe
Q 037654 7 ATLNHISRES------SDIRRLADFYKEIFGFEEI 35 (86)
Q Consensus 7 ~~i~HI~i~V------~Dl~~s~~FY~~vLG~~~~ 35 (86)
.++||+++.| .|++...++-++ .|+...
T Consensus 183 ~~~NH~T~~v~~l~~~~dI~~v~~~l~~-~G~~~n 216 (302)
T PF07063_consen 183 YHINHFTPRVNRLKKFLDIDAVNAFLKE-RGIPMN 216 (302)
T ss_dssp CS-SEEEEETTT-TT-S-HHHHHHHHHH-TT--B-
T ss_pred cccceeeceeecccccccHHHHHHHHHH-cCCCcc
Confidence 4799999999 999999999998 898875
No 190
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=40.31 E-value=26 Score=19.11 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=16.0
Q ss_pred eEEEEEeCCHHHHHHHHHHhhCCeE
Q 037654 10 NHISRESSDIRRLADFYKEIFGFEE 34 (86)
Q Consensus 10 ~HI~i~V~Dl~~s~~FY~~vLG~~~ 34 (86)
.++.+.+. .++.+||+. +||++
T Consensus 58 ~~i~l~~~--~~~~~fY~~-~GF~~ 79 (79)
T PF13508_consen 58 KKIFLFTN--PAAIKFYEK-LGFEE 79 (79)
T ss_dssp SEEEEEEE--HHHHHHHHH-TTEEE
T ss_pred CcEEEEEc--HHHHHHHHH-CcCCC
Confidence 45555553 689999997 88874
No 191
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=37.96 E-value=65 Score=20.80 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=21.6
Q ss_pred ceeeEEEEEeC-CHHHHHHHHHHhhCCeEee
Q 037654 7 ATLNHISRESS-DIRRLADFYKEIFGFEEIE 36 (86)
Q Consensus 7 ~~i~HI~i~V~-Dl~~s~~FY~~vLG~~~~~ 36 (86)
.+++.+.+.|. +=.++.+||++ +||+...
T Consensus 158 ~g~~~i~l~v~~~N~~a~~~yek-~Gf~~~~ 187 (194)
T PRK10975 158 RGLTRLRVATQMGNLAALRLYIR-SGANIES 187 (194)
T ss_pred cCCCEEEEEeCCCcHHHHHHHHH-CCCeEeE
Confidence 46677877764 34689999986 9999753
No 192
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=37.26 E-value=43 Score=21.72 Aligned_cols=27 Identities=11% Similarity=0.066 Sum_probs=20.5
Q ss_pred eeeEEEEEeC-CHHHHHHHHHHhhCCeEe
Q 037654 8 TLNHISRESS-DIRRLADFYKEIFGFEEI 35 (86)
Q Consensus 8 ~i~HI~i~V~-Dl~~s~~FY~~vLG~~~~ 35 (86)
++..|.+.|. +=.+|.+||++ +||+..
T Consensus 156 g~~~I~l~v~~~N~~A~~~Y~k-lGF~~~ 183 (191)
T TIGR02382 156 GLTRLRVATQMGNTAALRLYIR-SGANIE 183 (191)
T ss_pred CCCEEEEEeCCCCHHHHHHHHH-cCCccc
Confidence 5677777774 33689999996 999864
No 193
>PRK10314 putative acyltransferase; Provisional
Probab=36.74 E-value=44 Score=21.12 Aligned_cols=23 Identities=26% Similarity=0.584 Sum_probs=16.3
Q ss_pred EEEEeCCHHHHHHHHHHhhCCeEeee
Q 037654 12 ISRESSDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 12 I~i~V~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
+.|.+ -..+..||+. +||+.+.+
T Consensus 112 i~L~a--~~~a~~fY~k-~GF~~~g~ 134 (153)
T PRK10314 112 VYLGA--QAHLQNFYQS-FGFIPVTE 134 (153)
T ss_pred EEEeh--HHHHHHHHHH-CCCEECCC
Confidence 44444 3567899998 99998654
No 194
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=36.06 E-value=1.4e+02 Score=20.19 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=22.4
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCeEee
Q 037654 9 LNHISRESSDIRRLADFYKEIFGFEEIE 36 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~vLG~~~~~ 36 (86)
..-+-+.|.|.+.+.+-... |||....
T Consensus 78 r~E~E~~v~D~~~~~~il~~-LGF~~~~ 104 (178)
T COG1437 78 REEIEIEVSDVEKALEILKR-LGFKEVA 104 (178)
T ss_pred eeeEEEEeCCHHHHHHHHHH-cCCceee
Confidence 45677888899999999987 9998753
No 195
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=35.13 E-value=48 Score=19.15 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=20.7
Q ss_pred eeeEEEEEeC-CHHHHHHHHHHhhCCeEee
Q 037654 8 TLNHISRESS-DIRRLADFYKEIFGFEEIE 36 (86)
Q Consensus 8 ~i~HI~i~V~-Dl~~s~~FY~~vLG~~~~~ 36 (86)
++.++.+.|. +-..+.+||+. +||+...
T Consensus 87 ~~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~ 115 (131)
T TIGR01575 87 GVNEIFLEVRVSNIAAQALYKK-LGFNEIA 115 (131)
T ss_pred CCCeEEEEEecccHHHHHHHHH-cCCCccc
Confidence 4667777664 45678999986 9998754
No 196
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=34.92 E-value=78 Score=19.15 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=21.2
Q ss_pred eeeEEEEEeC-CHHHHHHHHHHhhCCeEee
Q 037654 8 TLNHISRESS-DIRRLADFYKEIFGFEEIE 36 (86)
Q Consensus 8 ~i~HI~i~V~-Dl~~s~~FY~~vLG~~~~~ 36 (86)
++.++.+.|. +=.++.+||++ +||+...
T Consensus 96 ~~~~~~~~~~~~N~~a~~~y~k-~Gf~~~~ 124 (146)
T PRK09491 96 GVATLWLEVRASNAAAIALYES-LGFNEVT 124 (146)
T ss_pred CCcEEEEEEccCCHHHHHHHHH-cCCEEee
Confidence 5667777664 45789999997 9999754
No 197
>PRK05279 N-acetylglutamate synthase; Validated
Probab=34.45 E-value=37 Score=25.31 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=17.7
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeEeee
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
++.++.+.. .++..||++ +||+....
T Consensus 392 g~~~l~l~~---~~a~~fY~k-~GF~~~g~ 417 (441)
T PRK05279 392 GLKRLFVLT---TRTAHWFLE-RGFVPVDV 417 (441)
T ss_pred CCCEEEEec---chHHHHHHH-CcCEECCh
Confidence 455555443 367899986 89998654
No 198
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.60 E-value=75 Score=20.91 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHhh-CCeEe--ee-C----C--CCceeEEEEecCCCcEEEEEe
Q 037654 17 SDIRRLADFYKEIF-GFEEI--EA-P----N--FGEFKVIWLNLPGAFALHLIE 60 (86)
Q Consensus 17 ~Dl~~s~~FY~~vL-G~~~~--~~-~----~--~~~~~~~~l~~~~~~~l~L~~ 60 (86)
.+.+++.+||.++| +-++. .+ + + .+.+-.+-|+++| +.+..+.
T Consensus 14 ~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g-~~f~~ld 66 (151)
T COG3865 14 GNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNG-QSFMALD 66 (151)
T ss_pred CcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECC-eEEEEEc
Confidence 78999999999998 33432 22 1 1 2335556677764 4444443
No 199
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=33.22 E-value=1.4e+02 Score=21.85 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=26.4
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeCCCCceeEEEEec
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAPNFGEFKVIWLNL 50 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~~~~~~~~~~l~~ 50 (86)
.++.|+-+.++... ..||+. +||.++...+ ...++++.
T Consensus 82 ~G~~~l~l~Tk~~~--~~fy~k-lGF~~i~~~~---~~~v~mE~ 119 (332)
T TIGR00124 82 LGRFHLFIFTKPEY--AALFEY-CGFKTLAEAK---DQGVLLEN 119 (332)
T ss_pred cCCCEEEEEECchH--HHHHHH-cCCEEeeeec---ceEEEEec
Confidence 47889999998543 579986 9999876532 13456654
No 200
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=32.77 E-value=83 Score=19.04 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=21.3
Q ss_pred ceeeEEEEEe-CCHHHHHHHHHHhhCCeEeee
Q 037654 7 ATLNHISRES-SDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 7 ~~i~HI~i~V-~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
.+++.+.+.| .+=.++++||+. +||+....
T Consensus 109 ~~~~~i~~~v~~~N~~~i~~~~~-~GF~~~g~ 139 (155)
T PF13420_consen 109 LGIHKIYLEVFSSNEKAINFYKK-LGFEEEGE 139 (155)
T ss_dssp TT-CEEEEEEETT-HHHHHHHHH-TTEEEEEE
T ss_pred cCeEEEEEEEecCCHHHHHHHHh-CCCEEEEE
Confidence 4566677655 467899999997 99998654
No 201
>PRK09831 putative acyltransferase; Provisional
Probab=32.65 E-value=68 Score=19.61 Aligned_cols=18 Identities=17% Similarity=0.612 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhCCeEeeeC
Q 037654 20 RRLADFYKEIFGFEEIEAP 38 (86)
Q Consensus 20 ~~s~~FY~~vLG~~~~~~~ 38 (86)
..+..||++ +||+...+.
T Consensus 110 ~~a~~~Y~k-~Gf~~~g~~ 127 (147)
T PRK09831 110 ITAKPFFER-YGFQTVKQQ 127 (147)
T ss_pred hhhHHHHHH-CCCEEeecc
Confidence 578999998 999987553
No 202
>TIGR03515 GldC gliding motility-associated protein GldC. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldC do not abolish the gliding phenotype but do impair it. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=32.27 E-value=50 Score=20.53 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=18.1
Q ss_pred eEEEEEeCC--HHHHHHHHHHhhC
Q 037654 10 NHISRESSD--IRRLADFYKEIFG 31 (86)
Q Consensus 10 ~HI~i~V~D--l~~s~~FY~~vLG 31 (86)
--|.|.++| ++++..||.+.|+
T Consensus 51 lrIDLWTKdMpVdEMK~Ff~qtl~ 74 (108)
T TIGR03515 51 MRIDLWTKDMPVDEMKRFFIETLG 74 (108)
T ss_pred eEEEeecCcCcHHHHHHHHHHHHH
Confidence 357788887 7899999999883
No 203
>PF04761 Phage_Treg: Lactococcus bacteriophage putative transcription regulator; InterPro: IPR006848 This family represents a number of putative transcription repressor proteins found in several Lactococcus bacteriophages. Horizontal transfer may account for the presence of similar proteins in Lactococcus species [].
Probab=31.49 E-value=44 Score=18.03 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhC
Q 037654 19 IRRLADFYKEIFG 31 (86)
Q Consensus 19 l~~s~~FY~~vLG 31 (86)
...|++||.+.|-
T Consensus 15 ~q~sve~yk~kl~ 27 (57)
T PF04761_consen 15 YQESVEFYKEKLS 27 (57)
T ss_pred HHHHHHHHHHHHH
Confidence 4689999998774
No 204
>PF03634 TCP: TCP family transcription factor; InterPro: IPR005333 The TCP transcription factor family was named after: teosinte branched 1 (tb1, Zea mays (Maize)) [], cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) [] and PCF in rice (Oryza sativa) [, ]. The TCP proteins code for structurally related proteins implicated in the evolution of key morphological traits []. However, the biochemical function of CYC and TB1 proteins remains to be demonstrated. One of the conserved regions is predicted to form a non-canonical basic-Helix-Loop-Helix (bHLP) structure. This domain is also found in two rice DNA-binding proteins, PCF1 and PCF2, where it has been shown to be involved in DNA-binding and dimerization. This family of transcription factors are exclusive to higher plants. They can be divided into two groups, TCP-C and TCP-P, that appear to have separated following an early gene duplication event []. This duplication event may have led to functional divergence and it has been proposed that that the TCP-P subfamily are transcriptional repressors, while the TPC-C subfamily are transcription activators [].
Probab=31.09 E-value=42 Score=21.09 Aligned_cols=17 Identities=18% Similarity=0.751 Sum_probs=14.6
Q ss_pred CHHHHHHHH--HHhhCCeE
Q 037654 18 DIRRLADFY--KEIFGFEE 34 (86)
Q Consensus 18 Dl~~s~~FY--~~vLG~~~ 34 (86)
.++-+++|| +|.|||.-
T Consensus 25 s~~~Ar~FFdLQDmLGfDK 43 (138)
T PF03634_consen 25 SLEIARKFFDLQDMLGFDK 43 (138)
T ss_pred CHHHHHHHHHHHHHhcCCC
Confidence 588899999 69999975
No 205
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=30.04 E-value=76 Score=21.72 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=20.3
Q ss_pred eeeEEEEEeC-CHHHHHHHHHHhhCCeEee
Q 037654 8 TLNHISRESS-DIRRLADFYKEIFGFEEIE 36 (86)
Q Consensus 8 ~i~HI~i~V~-Dl~~s~~FY~~vLG~~~~~ 36 (86)
++..+.+.|. +=..+.+||++ +||+...
T Consensus 259 g~~~v~l~v~~~N~~a~~~y~k-~GF~~~~ 287 (292)
T TIGR03448 259 GLPAVMLYVEADNEAAVRTYEK-LGFTVAE 287 (292)
T ss_pred CCCEEEEEEeCCCHHHHHHHHH-cCCEEcc
Confidence 4566777774 23689999987 8998754
No 206
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=29.61 E-value=1.6e+02 Score=18.90 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=31.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhhCCeEeeeC-CCCceeEEEEecCCCcEEEEEecCC
Q 037654 7 ATLNHISRESSDIRRLADFYKEIFGFEEIEAP-NFGEFKVIWLNLPGAFALHLIERNP 63 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~~FY~~vLG~~~~~~~-~~~~~~~~~l~~~~~~~l~L~~~~~ 63 (86)
.++.=|+|.|+|.+++.+-=. .+|.+....+ +.++....-++.-|+..|.++++.+
T Consensus 72 ~sv~aiafrV~Da~~A~~rA~-~~GA~~~~~~~~~~e~~~paI~g~G~sl~yfVdr~~ 128 (139)
T PF14696_consen 72 PSVCAIAFRVDDAAAAYERAV-ALGAEPVQEPTGPGELNIPAIRGIGGSLHYFVDRYG 128 (139)
T ss_dssp SEEEEEEEEES-HHHHHHHHH-HTT--EEEEEEETT-BEEEEEE-CCC-EEEEEE--S
T ss_pred CEEEEEEEEeCCHHHHHHHHH-HcCCcCcccCCCCCcEeeeeEEccCCCEEEEEecCC
Confidence 357779999999888877444 3788876553 2222344444433467888888754
No 207
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=29.32 E-value=60 Score=14.49 Aligned_cols=17 Identities=12% Similarity=0.405 Sum_probs=12.7
Q ss_pred eCCHHHHHHHHHHhhCC
Q 037654 16 SSDIRRLADFYKEIFGF 32 (86)
Q Consensus 16 V~Dl~~s~~FY~~vLG~ 32 (86)
..+.++++..|++.|-+
T Consensus 14 ~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 14 LGDYEEALEYYQRALEL 30 (34)
T ss_dssp TT-HHHHHHHHHHHHHH
T ss_pred hCCchHHHHHHHHHHHH
Confidence 35789999999988743
No 208
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=29.17 E-value=77 Score=24.66 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=22.0
Q ss_pred ceeeEEEEEeC-CHHHHHHHHHHhhCCeEe
Q 037654 7 ATLNHISRESS-DIRRLADFYKEIFGFEEI 35 (86)
Q Consensus 7 ~~i~HI~i~V~-Dl~~s~~FY~~vLG~~~~ 35 (86)
.+...+.+.|. |-.++.+||++ |||+.+
T Consensus 187 ~G~~~i~L~V~~~N~~Ai~fY~k-lGf~~~ 215 (547)
T TIGR03103 187 RGCAYMDLSVMHDNEQAIALYEK-LGFRRI 215 (547)
T ss_pred CCCCEEEEEEcCCCHHHHHHHHH-CCCEEe
Confidence 46777888775 56889999987 899874
No 209
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=28.69 E-value=1.2e+02 Score=19.15 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=21.9
Q ss_pred eeeEEEEEeC-CHHHHHHHHHHhhCCeEeee
Q 037654 8 TLNHISRESS-DIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 8 ~i~HI~i~V~-Dl~~s~~FY~~vLG~~~~~~ 37 (86)
+++.|.+.|. +=.+|.+||++ +||+....
T Consensus 116 ~~~rv~~~v~~~N~~s~~~yek-~GF~~~~~ 145 (186)
T PRK15130 116 NLYKLYLIVDKENEKAIHIYRK-LGFEVEGE 145 (186)
T ss_pred CceEEEEEEccCCHHHHHHHHH-CCCEEEEE
Confidence 5666777775 45699999998 89997643
No 210
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=27.52 E-value=61 Score=18.51 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=13.5
Q ss_pred EEEEeCCHHHHHHHHHHhhCC
Q 037654 12 ISRESSDIRRLADFYKEIFGF 32 (86)
Q Consensus 12 I~i~V~Dl~~s~~FY~~vLG~ 32 (86)
-.|.+.+-..+.+||+. +||
T Consensus 98 ~~l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 98 RRLTVEANERARRFYRK-LGF 117 (117)
T ss_dssp EEEEEEC-HHHHHHHHH-TT-
T ss_pred cEEEEEeCHHHHHHHHh-CCC
Confidence 34555578888999997 775
No 211
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=26.96 E-value=67 Score=14.37 Aligned_cols=13 Identities=23% Similarity=0.705 Sum_probs=11.3
Q ss_pred CCHHHHHHHHHHh
Q 037654 17 SDIRRLADFYKEI 29 (86)
Q Consensus 17 ~Dl~~s~~FY~~v 29 (86)
.|.+++..||+..
T Consensus 19 ~d~~~A~~~~~~A 31 (36)
T smart00671 19 KDLEKALEYYKKA 31 (36)
T ss_pred cCHHHHHHHHHHH
Confidence 5999999999874
No 212
>PHA02503 putative transcription regulator; Provisional
Probab=26.57 E-value=61 Score=17.44 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhh
Q 037654 19 IRRLADFYKEIF 30 (86)
Q Consensus 19 l~~s~~FY~~vL 30 (86)
...|++||.+.|
T Consensus 15 ~q~sve~yke~l 26 (57)
T PHA02503 15 YQESVEFYKEKL 26 (57)
T ss_pred HHHHHHHHHHHH
Confidence 467899999877
No 213
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=26.49 E-value=69 Score=23.98 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=23.0
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhCCeE
Q 037654 8 TLNHISRESSDIRRLADFYKEIFGFEE 34 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG~~~ 34 (86)
.-||.++...|..+..+-+.++||++.
T Consensus 425 ~~hH~~~~~G~~~~~l~~~a~~lgie~ 451 (452)
T cd00578 425 GAHHTALSYGHTAEELEDLAEILGIEV 451 (452)
T ss_pred CCceEEEECCCCHHHHHHHHHHcCCcc
Confidence 568999999998888888899999875
No 214
>PF13225 DUF4033: Domain of unknown function (DUF4033)
Probab=26.39 E-value=1.3e+02 Score=17.99 Aligned_cols=20 Identities=40% Similarity=0.700 Sum_probs=16.8
Q ss_pred HHHHHHHhhCCeEeeeCCCC
Q 037654 22 LADFYKEIFGFEEIEAPNFG 41 (86)
Q Consensus 22 s~~FY~~vLG~~~~~~~~~~ 41 (86)
+.+|+++-||+.+.-.|.+.
T Consensus 49 tQ~Ff~~~~Glpl~M~PNfe 68 (86)
T PF13225_consen 49 TQTFFKEEFGLPLTMEPNFE 68 (86)
T ss_pred hHHHHHhccCCceEecCCCc
Confidence 56999999999998877654
No 215
>PRK13688 hypothetical protein; Provisional
Probab=26.16 E-value=94 Score=19.96 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=13.5
Q ss_pred HHHHHHHHhhCCeEeeeC
Q 037654 21 RLADFYKEIFGFEEIEAP 38 (86)
Q Consensus 21 ~s~~FY~~vLG~~~~~~~ 38 (86)
.+.+||+. +||+.....
T Consensus 118 ~a~~FY~k-~GF~~~~~~ 134 (156)
T PRK13688 118 KSKDFWLK-LGFTPVEYK 134 (156)
T ss_pred chHHHHHh-CCCEEeEEe
Confidence 57899996 999987543
No 216
>PF10903 DUF2691: Protein of unknown function (DUF2691); InterPro: IPR020216 This entry represents a group of uncharacterised proteins.
Probab=25.35 E-value=1.1e+02 Score=20.11 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=21.0
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhhC
Q 037654 8 TLNHISRESSDIRRLADFYKEIFG 31 (86)
Q Consensus 8 ~i~HI~i~V~Dl~~s~~FY~~vLG 31 (86)
--..|+|.|+|.+.....|+.+..
T Consensus 109 D~~yv~IycKd~~~i~~lyqna~~ 132 (153)
T PF10903_consen 109 DSSYVSIYCKDQEIIESLYQNAQN 132 (153)
T ss_pred eccEEEEEEcCHHHHHHHHHHHHH
Confidence 446899999999999999999874
No 217
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=25.21 E-value=45 Score=17.88 Aligned_cols=13 Identities=31% Similarity=0.876 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHhh
Q 037654 18 DIRRLADFYKEIF 30 (86)
Q Consensus 18 Dl~~s~~FY~~vL 30 (86)
+.++..+||+..|
T Consensus 24 ~v~~~~dWYk~Mf 36 (50)
T smart00459 24 SVERPKDWYRTMF 36 (50)
T ss_pred CcccHHHHHHHHH
Confidence 7899999999976
No 218
>PRK10514 putative acetyltransferase; Provisional
Probab=25.18 E-value=72 Score=19.14 Aligned_cols=26 Identities=19% Similarity=0.486 Sum_probs=17.9
Q ss_pred EEEEEeC-CHHHHHHHHHHhhCCeEeee
Q 037654 11 HISRESS-DIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 11 HI~i~V~-Dl~~s~~FY~~vLG~~~~~~ 37 (86)
++.+.|. +=.+|.+||++ +||+....
T Consensus 100 ~i~~~v~~~N~~a~~~yek-~Gf~~~~~ 126 (145)
T PRK10514 100 ELTTDVNEQNEQAVGFYKK-MGFKVTGR 126 (145)
T ss_pred ccEEEeecCCHHHHHHHHH-CCCEEecc
Confidence 4444443 33589999986 99998643
No 219
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=25.02 E-value=1.2e+02 Score=18.03 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=17.6
Q ss_pred EEEEEeCCHHHHHHHHHHhh
Q 037654 11 HISRESSDIRRLADFYKEIF 30 (86)
Q Consensus 11 HI~i~V~Dl~~s~~FY~~vL 30 (86)
.++|.-.|.+++.+|++.+.
T Consensus 82 ~~GL~F~se~eA~~F~~~v~ 101 (104)
T cd00837 82 VYGLNFASEEEAAQFRKKVL 101 (104)
T ss_pred EEEEeeCCHHHHHHHHHHHH
Confidence 57899999999999999864
No 220
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=24.73 E-value=78 Score=25.14 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=20.3
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCe
Q 037654 9 LNHISRESSDIRRLADFYKEIFGFE 33 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~vLG~~ 33 (86)
-..|++.-.|++++.+||++.|.=.
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCc
Confidence 3467788889999999999988543
No 221
>PRK03624 putative acetyltransferase; Provisional
Probab=23.81 E-value=1e+02 Score=17.87 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=19.0
Q ss_pred eeeEEEEEeC-CHHHHHHHHHHhhCCeEee
Q 037654 8 TLNHISRESS-DIRRLADFYKEIFGFEEIE 36 (86)
Q Consensus 8 ~i~HI~i~V~-Dl~~s~~FY~~vLG~~~~~ 36 (86)
+...+.+.|. +=..+.+||++ +||+...
T Consensus 101 ~~~~~~~~~~~~N~~~~~~y~k-~GF~~~~ 129 (140)
T PRK03624 101 GCPKINLQVREDNDAVLGFYEA-LGYEEQD 129 (140)
T ss_pred CCCEEEEEEecCcHHHHHHHHH-cCCcccc
Confidence 4455555554 45778999965 9998643
No 222
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=23.44 E-value=1.1e+02 Score=18.71 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=17.1
Q ss_pred eeEEEEEeCCHHHHHHHHHH
Q 037654 9 LNHISRESSDIRRLADFYKE 28 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~ 28 (86)
-.+|.|--+|++.+++||..
T Consensus 53 tr~vviEFps~~~ar~~y~S 72 (96)
T COG5470 53 TRNVVIEFPSLEAARDCYNS 72 (96)
T ss_pred ccEEEEEcCCHHHHHHHhcC
Confidence 45788889999999999965
No 223
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=23.40 E-value=1.3e+02 Score=18.03 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=17.2
Q ss_pred EEEEEeCCHHHHHHHHHHh
Q 037654 11 HISRESSDIRRLADFYKEI 29 (86)
Q Consensus 11 HI~i~V~Dl~~s~~FY~~v 29 (86)
.++|.-.|.+++..||+.+
T Consensus 89 ~~GLnF~se~eA~~F~~~v 107 (111)
T PF00568_consen 89 VYGLNFASEEEADQFYKKV 107 (111)
T ss_dssp EEEEEESSHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHH
Confidence 6889999999999999876
No 224
>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the C terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [].; PDB: 2QGG_A 3H9N_A 2WJN_H 2PRC_H 5PRC_H 2X5V_H 1DXR_H 1R2C_H 3G7F_H 1PRC_H ....
Probab=23.06 E-value=1.4e+02 Score=16.17 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=19.9
Q ss_pred HHHHHhhCCeEeeeCC--CCceeEEEEecCCC
Q 037654 24 DFYKEIFGFEEIEAPN--FGEFKVIWLNLPGA 53 (86)
Q Consensus 24 ~FY~~vLG~~~~~~~~--~~~~~~~~l~~~~~ 53 (86)
-+|++++|+++....+ .+...-+++....+
T Consensus 4 ~~~s~l~g~~V~~~~G~~iG~V~di~id~~~~ 35 (79)
T PF05239_consen 4 FRLSELIGKEVIDRDGEKIGKVKDIVIDPKTG 35 (79)
T ss_dssp GCHHHHTTSEEEETTSCEEEEEEEEEEETTTT
T ss_pred EEhHHccCCEEEcCCCCEEEEEEEEEEeCCCC
Confidence 3688999999986642 34455566776444
No 225
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=22.99 E-value=87 Score=13.69 Aligned_cols=17 Identities=0% Similarity=0.321 Sum_probs=12.5
Q ss_pred eCCHHHHHHHHHHhhCC
Q 037654 16 SSDIRRLADFYKEIFGF 32 (86)
Q Consensus 16 V~Dl~~s~~FY~~vLG~ 32 (86)
..+.+++++.|++.+-+
T Consensus 14 ~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 14 LGNYEEAIEYFEKALEL 30 (34)
T ss_dssp TT-HHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHH
Confidence 45789999999987743
No 226
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=22.94 E-value=89 Score=13.79 Aligned_cols=16 Identities=6% Similarity=0.428 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHhhCC
Q 037654 17 SDIRRLADFYKEIFGF 32 (86)
Q Consensus 17 ~Dl~~s~~FY~~vLG~ 32 (86)
.|.++|.+.|+..+-+
T Consensus 15 ~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 15 GDYEEALEYFEKALEL 30 (34)
T ss_dssp TSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5889999999987643
No 227
>PF13007 LZ_Tnp_IS66: Transposase C of IS166 homeodomain; InterPro: IPR024463 This entry represents a leucine-zipper-like, or homeodomain-like, region of the transposase TnpC from insertion element IS66 [].
Probab=22.78 E-value=62 Score=17.91 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCC
Q 037654 72 YSTTSPTADPSHLPR 86 (86)
Q Consensus 72 ~~~~~~~~~~~~~~~ 86 (86)
-..+.+.+=|.||||
T Consensus 61 ~~~~~r~~lp~~LPr 75 (78)
T PF13007_consen 61 RKKRGRKPLPAHLPR 75 (78)
T ss_pred CCCCCCCCCCCCCCe
Confidence 445777788999997
No 228
>PHA00212 putative transcription regulator
Probab=22.33 E-value=81 Score=17.29 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhh
Q 037654 19 IRRLADFYKEIF 30 (86)
Q Consensus 19 l~~s~~FY~~vL 30 (86)
...|++||++.|
T Consensus 17 ~q~sve~yk~~l 28 (63)
T PHA00212 17 QQHSVEWYKKQL 28 (63)
T ss_pred HHHHHHHHHHHH
Confidence 467899999876
No 229
>PRK10562 putative acetyltransferase; Provisional
Probab=21.88 E-value=1.3e+02 Score=18.11 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=18.6
Q ss_pred eEEEEEe-CCHHHHHHHHHHhhCCeEee
Q 037654 10 NHISRES-SDIRRLADFYKEIFGFEEIE 36 (86)
Q Consensus 10 ~HI~i~V-~Dl~~s~~FY~~vLG~~~~~ 36 (86)
..+.+.| .+=..|.+||++ +||+...
T Consensus 98 ~~~~~~v~~~N~~s~~~y~k-~Gf~~~~ 124 (145)
T PRK10562 98 PHLSLEVYQKNQRAVNFYHA-QGFRIVD 124 (145)
T ss_pred CeEEEEEEcCChHHHHHHHH-CCCEEcc
Confidence 3445555 344689999998 9999864
No 230
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=21.28 E-value=1.8e+02 Score=17.42 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=21.6
Q ss_pred eeeEEEEEe-CCHHHHHHHHHHhhCCeEeee
Q 037654 8 TLNHISRES-SDIRRLADFYKEIFGFEEIEA 37 (86)
Q Consensus 8 ~i~HI~i~V-~Dl~~s~~FY~~vLG~~~~~~ 37 (86)
+++.|.+.| .+=.+|++||+. +||+....
T Consensus 109 ~~~~i~~~v~~~N~~s~~~y~k-~Gf~~~g~ 138 (156)
T TIGR03585 109 GLHKLSLEVLEFNNKALKLYEK-FGFEREGV 138 (156)
T ss_pred CeeEEEEEEeccCHHHHHHHHH-cCCeEeee
Confidence 566677665 456789999997 99997643
No 231
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=21.11 E-value=1.5e+02 Score=17.80 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=17.5
Q ss_pred EEEEEeCCHHHHHHHHHHhh
Q 037654 11 HISRESSDIRRLADFYKEIF 30 (86)
Q Consensus 11 HI~i~V~Dl~~s~~FY~~vL 30 (86)
.++|.-.|.+++.+|++.+.
T Consensus 84 ~~GLnF~se~EA~~F~~~v~ 103 (106)
T smart00461 84 VYGLNFASEEEAKKFRKKVL 103 (106)
T ss_pred EEEeecCCHHHHHHHHHHHH
Confidence 47899999999999999864
No 232
>PF11098 Chlorosome_CsmC: Chlorosome envelope protein C; InterPro: IPR020995 Chlorosomes are light-harvesting antennae found in green bacteria. This entry represents Chlorosome envelope protein C (CsmC) which is one of the proteins that exists in the chlorosome envelope and has been shown to exist as a homomultimer with CsmD in the chlorosome envelope []. CsmC is thought to be important in chlorosome elongation and shape [].
Probab=20.99 E-value=75 Score=20.24 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=19.8
Q ss_pred ceeeEEEEEeCCHHHHH-HHHHHhh
Q 037654 7 ATLNHISRESSDIRRLA-DFYKEIF 30 (86)
Q Consensus 7 ~~i~HI~i~V~Dl~~s~-~FY~~vL 30 (86)
..|+.++|.|+|..|+. +.|.+..
T Consensus 76 eTidRVaITvKD~srsAg~lY~dav 100 (139)
T PF11098_consen 76 ETIDRVAITVKDVSRSAGELYSDAV 100 (139)
T ss_pred ceeeeEEEEehhhhhhhHHHHHHHH
Confidence 35899999999998865 7888865
No 233
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=20.11 E-value=82 Score=13.60 Aligned_cols=14 Identities=7% Similarity=0.503 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHhh
Q 037654 17 SDIRRLADFYKEIF 30 (86)
Q Consensus 17 ~Dl~~s~~FY~~vL 30 (86)
.|.+++++.|++++
T Consensus 14 g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 14 GDYDEAIEYFQRLI 27 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 46788888888875
No 234
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=20.00 E-value=1.3e+02 Score=19.16 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=20.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHhhCCeE
Q 037654 9 LNHISRESSDIRRLADFYKEIFGFEE 34 (86)
Q Consensus 9 i~HI~i~V~Dl~~s~~FY~~vLG~~~ 34 (86)
-+||-+.-.|++++++=.++ .|.++
T Consensus 102 tDhiLVr~~dLekAv~~L~e-aGhev 126 (128)
T COG3603 102 TDHILVREEDLEKAVKALEE-AGHEV 126 (128)
T ss_pred CceEEEehhhHHHHHHHHHH-cCCcc
Confidence 47999999999999998877 66664
Done!