BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037655
         (1125 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SWH|A Chain A, Munc13-1, Mun Domain, C-Terminal Module
 pdb|3SWH|B Chain B, Munc13-1, Mun Domain, C-Terminal Module
          Length = 341

 Score = 33.5 bits (75), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 35/146 (23%)

Query: 902  GSVESARLESFLTHIDTVLDHICSLIDDSLRDFVVLSICRASLEGYV----WVLLDGGPS 957
            G+V ++   S     D VL  I  L+D +L  F    IC  ++   V    W L+     
Sbjct: 196  GNVPASACSSVAQDADNVLQPIMDLLDSNLTLFA--KICEKTVLKRVLKELWKLVMNTME 253

Query: 958  R---------------------AFSNSDITMMEDDLNTLKEFFIAGGEGLPRSLVEREA- 995
            R                     + +     ++E  L+T+K++F AGG GL ++ +E+   
Sbjct: 254  RTIVLPPEFSKLKDHMVREEAKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPD 313

Query: 996  ----KYAEEILGLFTLQSETLIRMLM 1017
                +YA   L L+T  ++ LI+  +
Sbjct: 314  LQSLRYA---LSLYTQATDLLIKTFV 336


>pdb|3F70|A Chain A, Crystal Structure Of L3mbtl2-H4k20me1 Complex
 pdb|3F70|B Chain B, Crystal Structure Of L3mbtl2-H4k20me1 Complex
          Length = 456

 Score = 31.2 bits (69), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 930 SLRDFVVLSICRASLEGYVWVLLDGGPS 957
           +L +  V ++C+  L+GY+ + +DGGPS
Sbjct: 272 NLGNICVATVCKVLLDGYLMICVDGGPS 299


>pdb|3CEY|A Chain A, Crystal Structure Of L3mbtl2
 pdb|3CEY|B Chain B, Crystal Structure Of L3mbtl2
          Length = 474

 Score = 31.2 bits (69), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 930 SLRDFVVLSICRASLEGYVWVLLDGGPS 957
           +L +  V ++C+  L+GY+ + +DGGPS
Sbjct: 290 NLGNICVATVCKVLLDGYLMICVDGGPS 317


>pdb|3O4Z|A Chain A, Tel2 Structure And Function In The Hsp90-Dependent
           Maturation Of Mtor And Atr Complexes
 pdb|3O4Z|B Chain B, Tel2 Structure And Function In The Hsp90-Dependent
           Maturation Of Mtor And Atr Complexes
 pdb|3O4Z|C Chain C, Tel2 Structure And Function In The Hsp90-Dependent
           Maturation Of Mtor And Atr Complexes
 pdb|3O4Z|D Chain D, Tel2 Structure And Function In The Hsp90-Dependent
           Maturation Of Mtor And Atr Complexes
          Length = 647

 Score = 29.6 bits (65), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   QHVSLLERYRRDRRQLIEFLLSSGLIKELRTPSGPTTSLPNADFDSLSADYII 56
           +H+   ER  R+R   I  LLS G    L+  S    ++PN  F+S S D II
Sbjct: 331 KHLGSNEREARERAMFIAKLLSGG---HLKYESDFKINIPNVKFESNSDDKII 380


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,913,990
Number of Sequences: 62578
Number of extensions: 1231552
Number of successful extensions: 2848
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2845
Number of HSP's gapped (non-prelim): 5
length of query: 1125
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1016
effective length of database: 8,152,335
effective search space: 8282772360
effective search space used: 8282772360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)