BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037655
(1125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UPW8|UN13A_HUMAN Protein unc-13 homolog A OS=Homo sapiens GN=UNC13A PE=2 SV=4
Length = 1703
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 957 SRAFSNSDITMMEDDLNTLKEFFIAGGEGLPRSLVEREA-----KYAEEILGLFTLQSET 1011
+++ + ++E L+T+K++F AGG GL ++ +E+ +YA L L+T ++
Sbjct: 1451 AKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYA---LSLYTQATDL 1507
Query: 1012 LIRMLMSASENISLDL-DPQNHGPMHVE 1038
LI+ + L + DP +HVE
Sbjct: 1508 LIKTFVQTQSAQGLGVEDPVGEVSVHVE 1535
>sp|P78016|PARE_MYCPN DNA topoisomerase 4 subunit B OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=parE PE=3 SV=1
Length = 635
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 32/152 (21%)
Query: 699 GASIIEVFRIIEETVDQFFGM-NLPLDIIHLQALLSIIFHSLDAYLQRLLNQLVEQKHLY 757
G I F I + D+ M + D H+Q LL F+ R + L+E+ H+Y
Sbjct: 480 GTGIGNNFTIRDRKYDKIIIMTDADNDGAHIQILLLTFFY-------RYMKPLIEKGHIY 532
Query: 758 PSAPPLTRYE-----------ETVLPMLKKKLLEFTV----------LDKSVSEKLNELT 796
+ PPL ++E E L + K F V D+ +N +T
Sbjct: 533 LALPPLYKFEGRDKKARYLWTEQELEQYRAKHSHFNVQRYKGLGEMNADQLWETTMNPMT 592
Query: 797 IPKLCIRLNTLQYIQKQVSVL---EEGIRKSW 825
+ ++L+ +KQ++V + +RKSW
Sbjct: 593 RKLIQVKLDNFIQAEKQINVFMGDKTELRKSW 624
>sp|Q9Z1N9|UN13B_MOUSE Protein unc-13 homolog B OS=Mus musculus GN=Unc13b PE=2 SV=2
Length = 1602
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 957 SRAFSNSDITMMEDDLNTLKEFFIAGGEGLPRSLVEREA-----KYAEEILGLFTLQSET 1011
+R + +++ L+T+K++F AGG GL ++ +E+ +YA L L+T ++T
Sbjct: 1355 TRNLTPKQCAVLDLALDTIKQYFHAGGNGLKKTFLEKSPDLQSLRYA---LSLYTQTTDT 1411
Query: 1012 LIRMLMSA 1019
LI+ + +
Sbjct: 1412 LIKTFVRS 1419
>sp|O14795|UN13B_HUMAN Protein unc-13 homolog B OS=Homo sapiens GN=UNC13B PE=1 SV=2
Length = 1591
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 957 SRAFSNSDITMMEDDLNTLKEFFIAGGEGLPRSLVEREA-----KYAEEILGLFTLQSET 1011
+R + +++ L+T+K++F AGG GL ++ +E+ +YA L L+T ++T
Sbjct: 1344 TRNLTPKQCAVLDLALDTIKQYFHAGGNGLKKTFLEKSPDLQSLRYA---LSLYTQTTDT 1400
Query: 1012 LIRMLMSA 1019
LI+ + +
Sbjct: 1401 LIKTFVRS 1408
>sp|Q4KUS2|UN13A_MOUSE Protein unc-13 homolog A OS=Mus musculus GN=Unc13a PE=1 SV=3
Length = 1712
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 957 SRAFSNSDITMMEDDLNTLKEFFIAGGEGLPRSLVEREA-----KYAEEILGLFTLQSET 1011
+++ + ++E L+T+K++F AGG GL ++ +E+ +YA L L+T ++
Sbjct: 1460 AKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYA---LSLYTQATDL 1516
Query: 1012 LIRMLM-SASENISLDLDPQNHGPMHVE 1038
LI+ + + S S DP +HVE
Sbjct: 1517 LIKTFVQTQSAQGSGVEDPVGEVSVHVE 1544
>sp|Q8NB66|UN13C_HUMAN Protein unc-13 homolog C OS=Homo sapiens GN=UNC13C PE=2 SV=3
Length = 2214
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 957 SRAFSNSDITMMEDDLNTLKEFFIAGGEGLPRSLVEREA-----KYAEEILGLFTLQSET 1011
+R + +ME L T+K++F AGG GL ++ +E+ +YA L L+T ++
Sbjct: 1967 ARGLTPRQCAIMEVVLATIKQYFHAGGNGLKKNFLEKSPDLQSLRYA---LSLYTQTTDA 2023
Query: 1012 LIRMLM 1017
LI+ +
Sbjct: 2024 LIKKFI 2029
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,785,104
Number of Sequences: 539616
Number of extensions: 16618165
Number of successful extensions: 44557
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 44541
Number of HSP's gapped (non-prelim): 29
length of query: 1125
length of database: 191,569,459
effective HSP length: 128
effective length of query: 997
effective length of database: 122,498,611
effective search space: 122131115167
effective search space used: 122131115167
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)