Query 037659
Match_columns 202
No_of_seqs 142 out of 293
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 03:09:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00179 acyl- [acyl-carrier p 100.0 1.7E-73 3.7E-78 521.6 10.2 159 42-202 40-202 (390)
2 PF03405 FA_desaturase_2: Fatt 100.0 2E-63 4.4E-68 448.6 -4.5 145 56-202 1-145 (330)
3 cd01050 Acyl_ACP_Desat Acyl AC 100.0 1.4E-54 3E-59 386.1 3.5 140 58-202 1-140 (297)
4 cd01047 ACSF Aerobic Cyclase S 46.2 5.4 0.00012 37.4 -0.6 41 136-176 156-196 (323)
5 PF07618 DUF1580: Protein of u 46.1 10 0.00023 27.4 1.0 36 161-198 18-53 (56)
6 PRK13654 magnesium-protoporphy 45.0 6.5 0.00014 37.3 -0.3 41 136-176 176-216 (355)
7 TIGR02029 AcsF magnesium-proto 44.4 6.1 0.00013 37.2 -0.5 40 137-176 167-206 (337)
8 PLN02508 magnesium-protoporphy 42.8 6.5 0.00014 37.3 -0.6 25 152-176 188-212 (357)
9 CHL00185 ycf59 magnesium-proto 41.8 7 0.00015 37.0 -0.6 40 137-176 173-212 (351)
10 cd00657 Ferritin_like Ferritin 41.5 4.3 9.3E-05 28.1 -1.6 31 155-185 27-57 (130)
11 COG3211 PhoX Predicted phospha 31.3 19 0.00042 36.4 0.5 19 152-173 226-244 (616)
12 TIGR01680 Veg_Stor_Prot vegeta 31.0 72 0.0016 29.3 4.1 74 122-202 105-187 (275)
13 COG5023 Tubulin [Cytoskeleton] 23.1 49 0.0011 32.3 1.6 37 165-201 301-337 (443)
14 PF08784 RPA_C: Replication pr 22.8 61 0.0013 24.1 1.8 33 166-202 62-94 (102)
15 PF03953 Tubulin_C: Tubulin C- 22.7 70 0.0015 24.8 2.2 31 169-199 45-75 (126)
16 cd01997 GMP_synthase_C The C-t 21.8 1.1E+02 0.0025 27.7 3.6 45 50-95 182-226 (295)
17 KOG3331 Mitochondrial/chloropl 21.4 38 0.00083 30.1 0.5 17 156-172 58-74 (213)
18 TIGR00884 guaA_Cterm GMP synth 20.7 1.4E+02 0.003 27.3 3.9 43 50-93 197-240 (311)
No 1
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=100.00 E-value=1.7e-73 Score=521.58 Aligned_cols=159 Identities=75% Similarity=1.263 Sum_probs=153.5
Q ss_pred ccccCCCC----CCCCCCChhHHHHHHHhHHHHHhhhhhccccccccCCCCCCCCCCCCCCCchhhhhhhccccccCCCc
Q 037659 42 SAVAAPPK----PKTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPD 117 (202)
Q Consensus 42 ~~~~~~~~----~~~~~~~~~k~Evl~~LE~~ve~~l~~hLkpve~~WqPhDfLP~~~~~f~~F~~~v~elre~a~~Lpd 117 (202)
++++.+++ +++|+|+|+|+|||++||+||++||++||+|+|++|||||||||+++ +||.++|++||+++++|||
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~evl~~LE~~ve~~l~~hL~pvek~WqPhDflP~~~~--~~F~~~v~~lr~~~~~Lpd 117 (390)
T PLN00179 40 KKPFAPPREVHVQVTHSMPPEKLEIFKSLEGWAEENLLPLLKPVEKSWQPQDFLPDPAS--EGFYDQVKELRERAAELPD 117 (390)
T ss_pred cccCCCchhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHhchHhhccCccccCCCCcc--CChHHHHhhhhHhhcCCCh
Confidence 34455443 89999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred ceeeeeeeeccccCCcchhhHhhhhhcCCcCCCCCCCCCccccccccchhhhhhhhhcccceeecCCcChhHHHHHHHHH
Q 037659 118 DYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYL 197 (202)
Q Consensus 118 ~~~vaLVgnmITEEaLPtY~~~l~~~~gv~d~tg~s~~~W~~Wvr~WTAEENRHGdlLn~YLylSgrVDm~~lE~t~q~L 197 (202)
+++|||||||||||||||||||||++|||+|+||+++++|++|+|+||||||||||+|||||||||+|||+++|+++|||
T Consensus 118 ~~~v~LvgdmiTEeaLPtY~~~Ln~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YLylTgrVDm~~iE~t~q~l 197 (390)
T PLN00179 118 DYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYL 197 (390)
T ss_pred hhhhhhhhcchhhhcchHHHHHHHHhcccccccCCCCCchhhhccccccccchHHHHHHHHHhhccCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCC
Q 037659 198 ISAGM 202 (202)
Q Consensus 198 I~~G~ 202 (202)
|++||
T Consensus 198 i~~G~ 202 (390)
T PLN00179 198 IGSGM 202 (390)
T ss_pred HhcCC
Confidence 99998
No 2
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=100.00 E-value=2e-63 Score=448.56 Aligned_cols=145 Identities=54% Similarity=0.901 Sum_probs=130.9
Q ss_pred ChhHHHHHHHhHHHHHhhhhhccccccccCCCCCCCCCCCCCCCchhhhhhhccccccCCCcceeeeeeeeccccCCcch
Q 037659 56 PPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPT 135 (202)
Q Consensus 56 ~~~k~Evl~~LE~~ve~~l~~hLkpve~~WqPhDfLP~~~~~f~~F~~~v~elre~a~~Lpd~~~vaLVgnmITEEaLPt 135 (202)
||+|+|||++||+||+++|++||+|++++|||||||||++| +||++++++||++|++|||++++||||||||||||||
T Consensus 1 ~~~~~evl~~Le~~v~~~~~~~l~~~~~~W~PhD~lP~~~~--~~F~~~~~~w~~~~~~Lpd~~~~alv~~llTEd~LPs 78 (330)
T PF03405_consen 1 PPEKLEVLRELEPVVEENLLRHLKPVEKDWQPHDFLPWSEG--RNFFLGGKDWRPSQSTLPDDARVALVGNLLTEDNLPS 78 (330)
T ss_dssp -GGGHHHHHHCHHHHHHHCHHHCH-CGGS--GGGGS-GCCS--TTHHHCCHHHHHHHHTS-HHHHHHHHHHHHHHHTHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHHhhCCCccccCCCCcc--ccHhHhcccCCHhhccCCHHHHHHHHHHHHhhhhhhH
Confidence 58999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred hhHhhhhhcCCcCCCCCCCCCccccccccchhhhhhhhhcccceeecCCcChhHHHHHHHHHHhcCC
Q 037659 136 YQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202 (202)
Q Consensus 136 Y~~~l~~~~gv~d~tg~s~~~W~~Wvr~WTAEENRHGdlLn~YLylSgrVDm~~lE~t~q~LI~~G~ 202 (202)
||++||++||++|++|+++++|++|+++||||||||||+||+|||+||+|||+++|++++++|.+||
T Consensus 79 Y~~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg~vDp~~lE~~r~~~i~~G~ 145 (330)
T PF03405_consen 79 YHRELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSGRVDPVALERTRMYLITAGF 145 (330)
T ss_dssp HHHHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-CCCCCHCCHHHHHH--
T ss_pred HHHHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
No 3
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=100.00 E-value=1.4e-54 Score=386.13 Aligned_cols=140 Identities=57% Similarity=0.976 Sum_probs=135.1
Q ss_pred hHHHHHHHhHHHHHhhhhhccccccccCCCCCCCCCCCCCCCchhhhhhhccccccCCCcceeeeeeeeccccCCcchhh
Q 037659 58 EKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQ 137 (202)
Q Consensus 58 ~k~Evl~~LE~~ve~~l~~hLkpve~~WqPhDfLP~~~~~f~~F~~~v~elre~a~~Lpd~~~vaLVgnmITEEaLPtY~ 137 (202)
.|+|||++|||||+++++++|+|++++|||||||||+++ +||+.++++||++|++|||++++||+||||||||||+||
T Consensus 1 ~~~el~~~le~~~~~~~~~~~~~~~~~W~p~d~lP~~~~--~~f~~~~~~~~~~~~~L~~~~~~~l~~~~itEd~LP~Y~ 78 (297)
T cd01050 1 TKLELLRSLEPVVEENLLNRLKPVEKDWQPHDFLPDSAS--EDFDLDVKELRERAAELPDDARVALVGNLLTEEALPTYH 78 (297)
T ss_pred ChhHHHHHHHHHHHHHHHHhcccHhhccCCcccCCCCCC--CChhhccccCchhhccCCHHHHHHHHHHHHHhhccHHHH
Confidence 478999999999999998888999999999999999999 889889999999999999999999999999999999999
Q ss_pred HhhhhhcCCcCCCCCCCCCccccccccchhhhhhhhhcccceeecCCcChhHHHHHHHHHHhcCC
Q 037659 138 TMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202 (202)
Q Consensus 138 ~~l~~~~gv~d~tg~s~~~W~~Wvr~WTAEENRHGdlLn~YLylSgrVDm~~lE~t~q~LI~~G~ 202 (202)
++||++||++|+ ++++|++|+++|||||||||++||+|||+||+|||+++|++++++|+.||
T Consensus 79 ~~L~~~f~~~~~---~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le~~~~~~~~~G~ 140 (297)
T cd01050 79 SMLNRLFGLDDE---SPTAWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALERTRQYLIGSGF 140 (297)
T ss_pred HHHHHHcCcccc---cccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Confidence 999999998775 67899999999999999999999999999999999999999999999997
No 4
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=46.20 E-value=5.4 Score=37.35 Aligned_cols=41 Identities=24% Similarity=0.477 Sum_probs=27.6
Q ss_pred hhHhhhhhcCCcCCCCCCCCCccccccccchhhhhhhhhcc
Q 037659 136 YQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLR 176 (202)
Q Consensus 136 Y~~~l~~~~gv~d~tg~s~~~W~~Wvr~WTAEENRHGdlLn 176 (202)
|-|.|.-.-.+.......-.|-=+|-..|--.||||||...
T Consensus 156 YwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~ 196 (323)
T cd01047 156 YWRYITIYRHLERNPENQFHPIFKYFENWCQDENRHGDFFA 196 (323)
T ss_pred hHHHHHHHHHHHhCcccccchHHHHHHHHhcccchhhHHHH
Confidence 33444444334443434456888999999999999999753
No 5
>PF07618 DUF1580: Protein of unknown function (DUF1580); InterPro: IPR011474 This is a family of short hypothetical proteins found in Rhodopirellula baltica.
Probab=46.12 E-value=10 Score=27.37 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=29.3
Q ss_pred ccccchhhhhhhhhcccceeecCCcChhHHHHHHHHHH
Q 037659 161 NRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLI 198 (202)
Q Consensus 161 vr~WTAEENRHGdlLn~YLylSgrVDm~~lE~t~q~LI 198 (202)
+-+|.-.-||||+.|+...|=.+ -|..|+...+|+-
T Consensus 18 ~~RW~~r~~~~G~~Letw~~GgR--R~tsv~aV~r~~~ 53 (56)
T PF07618_consen 18 ALRWQFRGNRHGNKLETWRVGGR--RMTSVQAVRRYLK 53 (56)
T ss_pred HHHHhhccccccceeeeeeeCce--ecchHHHHHHHhh
Confidence 45899999999999999998777 5777887766653
No 6
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=45.04 E-value=6.5 Score=37.27 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=27.3
Q ss_pred hhHhhhhhcCCcCCCCCCCCCccccccccchhhhhhhhhcc
Q 037659 136 YQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLR 176 (202)
Q Consensus 136 Y~~~l~~~~gv~d~tg~s~~~W~~Wvr~WTAEENRHGdlLn 176 (202)
|-|.|.-.-.+....-..-.|-=+|-..|=-.||||||...
T Consensus 176 YwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~ 216 (355)
T PRK13654 176 YWRYITIYRHLEKHPEHRFHPIFKFFENWCQDENRHGDFFA 216 (355)
T ss_pred HHHHHHHHHHHHhCcccccCchHHHHHHHhcccchhHHHHH
Confidence 33444444333343334456888999999999999999753
No 7
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=44.43 E-value=6.1 Score=37.20 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=27.0
Q ss_pred hHhhhhhcCCcCCCCCCCCCccccccccchhhhhhhhhcc
Q 037659 137 QTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLR 176 (202)
Q Consensus 137 ~~~l~~~~gv~d~tg~s~~~W~~Wvr~WTAEENRHGdlLn 176 (202)
-|.|.-.-.+.......-.|-=+|-..|--.||||||...
T Consensus 167 wRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~ 206 (337)
T TIGR02029 167 WRYITIYRHLEENPENQFYPIFKYFESWCQDENRHGDAFA 206 (337)
T ss_pred HHHHHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHH
Confidence 3444443333343334456788999999999999999754
No 8
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=42.81 E-value=6.5 Score=37.26 Aligned_cols=25 Identities=32% Similarity=0.628 Sum_probs=20.8
Q ss_pred CCCCCccccccccchhhhhhhhhcc
Q 037659 152 ASSSPWAIWNRSWTAEENRHGDLLR 176 (202)
Q Consensus 152 ~s~~~W~~Wvr~WTAEENRHGdlLn 176 (202)
..-.|-=+|-..|--.||||||...
T Consensus 188 ~r~~PIFk~Fe~WCqDEnRHGd~Fa 212 (357)
T PLN02508 188 YQLYPIFKYFENWCQDENRHGDFFS 212 (357)
T ss_pred cccchHHHHHHHHhcccchhHHHHH
Confidence 3456788999999999999999753
No 9
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=41.77 E-value=7 Score=37.00 Aligned_cols=40 Identities=25% Similarity=0.413 Sum_probs=26.2
Q ss_pred hHhhhhhcCCcCCCCCCCCCccccccccchhhhhhhhhcc
Q 037659 137 QTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLR 176 (202)
Q Consensus 137 ~~~l~~~~gv~d~tg~s~~~W~~Wvr~WTAEENRHGdlLn 176 (202)
-|.|.-.-.+.......-.|-=+|-..|=-.||||||...
T Consensus 173 wRYItIyRHLe~~Pe~r~~PIF~~FE~WCqDEnRHGdfF~ 212 (351)
T CHL00185 173 WRYITIYRHLEKNPEYRIYPIFKFFESWCQDENRHGDFFA 212 (351)
T ss_pred hHHhHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHH
Confidence 3344433333333333455778999999999999999754
No 10
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=41.52 E-value=4.3 Score=28.09 Aligned_cols=31 Identities=26% Similarity=0.105 Sum_probs=26.3
Q ss_pred CCccccccccchhhhhhhhhcccceeecCCc
Q 037659 155 SPWAIWNRSWTAEENRHGDLLRSFLYLSGRV 185 (202)
Q Consensus 155 ~~W~~Wvr~WTAEENRHGdlLn~YLylSgrV 185 (202)
..+..+...|..||.+|.+.+.+++.--|..
T Consensus 27 ~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~ 57 (130)
T cd00657 27 PDLKDELLEIADEERRHADALAERLRELGGT 57 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4688999999999999999999998665543
No 11
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=31.26 E-value=19 Score=36.39 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=15.7
Q ss_pred CCCCCccccccccchhhhhhhh
Q 037659 152 ASSSPWAIWNRSWTAEENRHGD 173 (202)
Q Consensus 152 ~s~~~W~~Wvr~WTAEENRHGd 173 (202)
+..+||++|+ |+|||.+|-
T Consensus 226 gG~TPWGTyL---TCEEN~~g~ 244 (616)
T COG3211 226 GGVTPWGTYL---TCEENFDGY 244 (616)
T ss_pred CCCcCccceE---EEecccccc
Confidence 3467999998 999999863
No 12
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=31.05 E-value=72 Score=29.27 Aligned_cols=74 Identities=20% Similarity=0.108 Sum_probs=47.7
Q ss_pred eeeeeccccCCcchhhHhhhhhcCCcCCCCCCCCCcc-ccccccchhhhhhhhhcccc--------eeecCCcChhHHHH
Q 037659 122 VLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWA-IWNRSWTAEENRHGDLLRSF--------LYLSGRVDMLMIEK 192 (202)
Q Consensus 122 aLVgnmITEEaLPtY~~~l~~~~gv~d~tg~s~~~W~-~Wvr~WTAEENRHGdlLn~Y--------LylSgrVDm~~lE~ 192 (202)
++=.|=-.=+|+|.|-. ..+|... -+...|. .|+..=.|.=+....-|=+| .|||||-+ .+-+.
T Consensus 105 V~DIDET~LsN~pY~~~---~~~g~e~---~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e-~~r~a 177 (275)
T TIGR01680 105 LFNIDGTALSNIPYYKK---HGYGSEK---FDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLK-DKQAV 177 (275)
T ss_pred EEECccccccCHHHHHH---hcCCCCc---CChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCch-hHHHH
Confidence 33334344569995552 3345322 1234688 99888777766665555554 47999944 56788
Q ss_pred HHHHHHhcCC
Q 037659 193 TVQYLISAGM 202 (202)
Q Consensus 193 t~q~LI~~G~ 202 (202)
|++.|...||
T Consensus 178 T~~NL~kaGy 187 (275)
T TIGR01680 178 TEANLKKAGY 187 (275)
T ss_pred HHHHHHHcCC
Confidence 9999999996
No 13
>COG5023 Tubulin [Cytoskeleton]
Probab=23.05 E-value=49 Score=32.29 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=31.8
Q ss_pred chhhhhhhhhcccceeecCCcChhHHHHHHHHHHhcC
Q 037659 165 TAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAG 201 (202)
Q Consensus 165 TAEENRHGdlLn~YLylSgrVDm~~lE~t~q~LI~~G 201 (202)
.+=+-|+|..|.-|+..-|.|||+++.+++..+...+
T Consensus 301 v~~dpr~g~y~~~~~l~rG~v~~~dV~~a~~~v~~k~ 337 (443)
T COG5023 301 VSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKR 337 (443)
T ss_pred eeecCCCCeeeehhHHHhcCCCHHHHHHHHHHHHhcC
Confidence 3446699999999999999999999999998876543
No 14
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=22.82 E-value=61 Score=24.06 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=23.9
Q ss_pred hhhhhhhhhcccceeecCCcChhHHHHHHHHHHhcCC
Q 037659 166 AEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202 (202)
Q Consensus 166 AEENRHGdlLn~YLylSgrVDm~~lE~t~q~LI~~G~ 202 (202)
.||.-|=+.|-+-| +++..+|+.++++|+..|.
T Consensus 62 ~~~Gv~v~~I~~~l----~~~~~~v~~al~~L~~eG~ 94 (102)
T PF08784_consen 62 SEEGVHVDEIAQQL----GMSENEVRKALDFLSNEGH 94 (102)
T ss_dssp -TTTEEHHHHHHHS----TS-HHHHHHHHHHHHHTTS
T ss_pred CCCcccHHHHHHHh----CcCHHHHHHHHHHHHhCCe
Confidence 35555666666666 7789999999999998884
No 15
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=22.68 E-value=70 Score=24.77 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=25.6
Q ss_pred hhhhhhcccceeecCCcChhHHHHHHHHHHh
Q 037659 169 NRHGDLLRSFLYLSGRVDMLMIEKTVQYLIS 199 (202)
Q Consensus 169 NRHGdlLn~YLylSgrVDm~~lE~t~q~LI~ 199 (202)
.++|-.|--++..-|.|+++++++.++.+-.
T Consensus 45 ~~~gkyla~~~l~RG~v~~~di~~~i~~ik~ 75 (126)
T PF03953_consen 45 PRQGKYLACALLYRGDVSPKDINEAIAKIKQ 75 (126)
T ss_dssp TTSS-EEEEEEEEEESSTHHHHHHHHHHHHC
T ss_pred cccchhhhhhhccccccccchhhhHHHhhhh
Confidence 4558888888899999999999999998753
No 16
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=21.82 E-value=1.1e+02 Score=27.68 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=35.8
Q ss_pred CCCCCCChhHHHHHHHhHHHHHhhhhhccccccccCCCCCCCCCCC
Q 037659 50 PKTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPT 95 (202)
Q Consensus 50 ~~~~~~~~~k~Evl~~LE~~ve~~l~~hLkpve~~WqPhDfLP~~~ 95 (202)
+....++++|+++++.-|.++.+.+..+-. -.+.||.--.|....
T Consensus 182 Ri~g~it~e~l~~~~~ae~~~~~~~~~~~~-~~~~~q~~~~~~~~~ 226 (295)
T cd01997 182 RILGEVTEEKLEILREADAIVEEELEKAGL-YDKIWQAFAVLLPIK 226 (295)
T ss_pred EEecCCCHHHHHHHHHHHHHHHHHHHhcCc-ccccceeeEEeeCcc
Confidence 445688999999999999999999987665 788999866554433
No 17
>KOG3331 consensus Mitochondrial/chloroplast ribosomal protein L4/L29 [Translation, ribosomal structure and biogenesis]
Probab=21.39 E-value=38 Score=30.12 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=14.0
Q ss_pred Cccccccccchhhhhhh
Q 037659 156 PWAIWNRSWTAEENRHG 172 (202)
Q Consensus 156 ~W~~Wvr~WTAEENRHG 172 (202)
+=.+-.|.|+|||-||-
T Consensus 58 p~~k~GR~W~aeELR~K 74 (213)
T KOG3331|consen 58 PPVKHGRAWSAEELRLK 74 (213)
T ss_pred CCcccCCccchHHHhcc
Confidence 44678899999999984
No 18
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=20.68 E-value=1.4e+02 Score=27.27 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=33.3
Q ss_pred CCCCCCChhHHHHHHHhHHHHHhhhhhccccccccCCCC-CCCCC
Q 037659 50 PKTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQ-DFLPD 93 (202)
Q Consensus 50 ~~~~~~~~~k~Evl~~LE~~ve~~l~~hLkpve~~WqPh-DfLP~ 93 (202)
+....++++|+++++.-|..+.+.+...=- -.+.||.- =+||.
T Consensus 197 Ri~g~it~e~l~~~~~ae~~~~~~~~~~~~-~~~~~q~~~~llp~ 240 (311)
T TIGR00884 197 RVLGEVTKEKLEILRRADAIVIEELKKAGL-YDKVWQAFAVLLPV 240 (311)
T ss_pred eeecccCHHHHHHHHHHHHHHHHHHHHcCC-ccccccceEEEeCc
Confidence 556689999999999999999999876433 57899954 45554
Done!