Query 037659
Match_columns 202
No_of_seqs 142 out of 293
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 04:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2uw1_A Desaturase, plastid del 100.0 3.5E-64 1.2E-68 453.4 1.3 151 50-202 2-152 (338)
2 1za0_A Possible acyl-[acyl-car 100.0 8.3E-56 2.8E-60 389.3 -6.2 137 56-202 4-141 (275)
3 1w0t_A Telomeric repeat bindin 24.2 20 0.00068 22.9 0.5 9 162-170 3-11 (53)
4 3sjm_A Telomeric repeat-bindin 22.3 23 0.00078 24.1 0.5 9 162-170 12-20 (64)
5 2elk_A SPCC24B10.08C protein; 22.0 23 0.00079 23.3 0.5 10 161-170 9-18 (58)
6 1guu_A C-MYB, MYB proto-oncoge 20.7 26 0.00088 22.1 0.5 9 162-170 4-12 (52)
7 1gvd_A MYB proto-oncogene prot 20.4 27 0.00091 22.1 0.5 9 162-170 4-12 (52)
8 1x41_A Transcriptional adaptor 20.0 27 0.00093 23.0 0.5 10 161-170 8-17 (60)
9 2d9a_A B-MYB, MYB-related prot 19.2 29 0.001 22.6 0.5 9 162-170 9-17 (60)
10 2yum_A ZZZ3 protein, zinc fing 18.3 31 0.0011 23.4 0.5 9 162-170 9-17 (75)
No 1
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A
Probab=100.00 E-value=3.5e-64 Score=453.36 Aligned_cols=151 Identities=69% Similarity=1.196 Sum_probs=140.0
Q ss_pred CCCCCCChhHHHHHHHhHHHHHhhhhhccccccccCCCCCCCCCCCCCCCchhhhhhhccccccCCCcceeeeeeeeccc
Q 037659 50 PKTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMIT 129 (202)
Q Consensus 50 ~~~~~~~~~k~Evl~~LE~~ve~~l~~hLkpve~~WqPhDfLP~~~~~f~~F~~~v~elre~a~~Lpd~~~vaLVgnmIT 129 (202)
|++|+|+++|+|||++||+||+++|++||+|++++|||||||||++| +||.++|++|||+|++|||++++||||||||
T Consensus 2 ~~~~~~~~~~~e~~~~Le~~~~~~~~~hL~p~~~~Wqp~D~lPw~~~--~~F~~~~~~~~~~~~~l~d~~~v~lv~~~iT 79 (338)
T 2uw1_A 2 QVTHSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDPVS--DGFEEQVRELRERAKEIPDDYFVVLVGDMIT 79 (338)
T ss_dssp ----------CHHHHHTHHHHHHHTGGGSCCGGGCCCGGGGSCCTTS--TTHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHhhhHhhcCCchhcCCCccc--cchhhhcccccHhhccCCHHHHHHHHHHHHh
Confidence 67999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred cCCcchhhHhhhhhcCCcCCCCCCCCCccccccccchhhhhhhhhcccceeecCCcChhHHHHHHHHHHhcCC
Q 037659 130 EDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202 (202)
Q Consensus 130 EEaLPtY~~~l~~~~gv~d~tg~s~~~W~~Wvr~WTAEENRHGdlLn~YLylSgrVDm~~lE~t~q~LI~~G~ 202 (202)
||||||||++||++||++|++|+|+++|++|+++||||||||||+||+||||||+|||+++|+++||+|.+||
T Consensus 80 Ed~LPtY~~~L~~~fgvrd~~g~~~~~w~~w~~~WtaEEnrHg~aL~~YL~lsgrvDp~~lE~~~~~~i~~Gf 152 (338)
T 2uw1_A 80 EEALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGM 152 (338)
T ss_dssp HHTHHHHHHHHTTSTTTSCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHCC
T ss_pred hhcchHHHHHHHHHcCcccccCCCcchHHHHhhhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2
Probab=100.00 E-value=8.3e-56 Score=389.26 Aligned_cols=137 Identities=22% Similarity=0.264 Sum_probs=109.0
Q ss_pred ChhHHHHHHHhHHHHHhhhhhccccccccCCCCCCCCCCCCCCCchhh-hhhhccccccCCCcceeeeeeeeccccCCcc
Q 037659 56 PPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTD-QVRALRERTAGLPDDYFVVLVGDMITEDAIP 134 (202)
Q Consensus 56 ~~~k~Evl~~LE~~ve~~l~~hLkpve~~WqPhDfLP~~~~~f~~F~~-~v~elre~a~~Lpd~~~vaLVgnmITEEaLP 134 (202)
+++|+|||++||+||++++++||| ++++|||||||||+++ ++|.+ +|++|||++++|||++++||+||||||||||
T Consensus 4 ~~~~~e~~~~le~~~~~~~~~~l~-~~~~W~p~d~lPw~~~--~~F~~~~~~~~~~~~~~L~d~~~~~l~~~~itEd~LP 80 (275)
T 1za0_A 4 KPVADALTLELEPVVEANMTRHLD-TEDIWFAHDYVPFDQG--ENFAFLGGRDWDPSQSTLPRTITDACEILLILKDNLA 80 (275)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHH-TCCCCCGGGGCCGGGC--CCCGGGTSCCCCGGGCCSCHHHHHHHHHHHHHHHC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHhh-hhccCChhhcCCCccc--ccchhcccccccHhhccCCHHHHHHHHHHHHHhhcch
Confidence 578999999999999999999999 9999999999999999 78877 8999999999999999999999999999999
Q ss_pred hhhHhhhhhcCCcCCCCCCCCCccccccccchhhhhhhhhcccceeecCCcChhHHHHHHHHHHhcCC
Q 037659 135 TYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGM 202 (202)
Q Consensus 135 tY~~~l~~~~gv~d~tg~s~~~W~~Wvr~WTAEENRHGdlLn~YLylSgrVDm~~lE~t~q~LI~~G~ 202 (202)
+||++||++||. +++|++|+++|||||||||++||+|||+||+|||+++|++++++|++||
T Consensus 81 ~Y~~~L~~~~~~-------d~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~lE~~~~~~i~~g~ 141 (275)
T 1za0_A 81 GHHRELVEHFIL-------EDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQHVMKGY 141 (275)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTTTTCTTC-------
T ss_pred HHHHHHHHhcCC-------CchHHHHhhhHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhcCC
Confidence 999999999995 3689999999999999999999999999999999999999999999997
No 3
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=24.15 E-value=20 Score=22.94 Aligned_cols=9 Identities=33% Similarity=0.889 Sum_probs=7.5
Q ss_pred cccchhhhh
Q 037659 162 RSWTAEENR 170 (202)
Q Consensus 162 r~WTAEENR 170 (202)
+.||.||+.
T Consensus 3 ~~WT~eEd~ 11 (53)
T 1w0t_A 3 QAWLWEEDK 11 (53)
T ss_dssp CCCCHHHHH
T ss_pred CCCCHHHHH
Confidence 579999985
No 4
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=22.29 E-value=23 Score=24.07 Aligned_cols=9 Identities=44% Similarity=0.996 Sum_probs=7.4
Q ss_pred cccchhhhh
Q 037659 162 RSWTAEENR 170 (202)
Q Consensus 162 r~WTAEENR 170 (202)
+.||.||+.
T Consensus 12 ~~WT~eED~ 20 (64)
T 3sjm_A 12 QKWTVEESE 20 (64)
T ss_dssp CCCCHHHHH
T ss_pred CCCCHHHHH
Confidence 579999974
No 5
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=22.04 E-value=23 Score=23.29 Aligned_cols=10 Identities=30% Similarity=0.800 Sum_probs=8.3
Q ss_pred ccccchhhhh
Q 037659 161 NRSWTAEENR 170 (202)
Q Consensus 161 vr~WTAEENR 170 (202)
-+.||+||+.
T Consensus 9 ~~~WT~eED~ 18 (58)
T 2elk_A 9 DENWGADEEL 18 (58)
T ss_dssp CCCCCHHHHH
T ss_pred CCCCCHHHHH
Confidence 4689999986
No 6
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=20.74 E-value=26 Score=22.12 Aligned_cols=9 Identities=44% Similarity=0.944 Sum_probs=7.4
Q ss_pred cccchhhhh
Q 037659 162 RSWTAEENR 170 (202)
Q Consensus 162 r~WTAEENR 170 (202)
+.||.||+.
T Consensus 4 ~~Wt~eED~ 12 (52)
T 1guu_A 4 TRWTREEDE 12 (52)
T ss_dssp CCCCHHHHH
T ss_pred CCCCHHHHH
Confidence 579999985
No 7
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=20.36 E-value=27 Score=22.12 Aligned_cols=9 Identities=44% Similarity=0.985 Sum_probs=7.4
Q ss_pred cccchhhhh
Q 037659 162 RSWTAEENR 170 (202)
Q Consensus 162 r~WTAEENR 170 (202)
+.||.||+.
T Consensus 4 ~~Wt~eED~ 12 (52)
T 1gvd_A 4 GPWTKEEDQ 12 (52)
T ss_dssp CSCCHHHHH
T ss_pred CCCCHHHHH
Confidence 579999984
No 8
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=19.98 E-value=27 Score=22.97 Aligned_cols=10 Identities=50% Similarity=0.903 Sum_probs=8.1
Q ss_pred ccccchhhhh
Q 037659 161 NRSWTAEENR 170 (202)
Q Consensus 161 vr~WTAEENR 170 (202)
-+.||+||+.
T Consensus 8 ~~~WT~eED~ 17 (60)
T 1x41_A 8 DPSWTAQEEM 17 (60)
T ss_dssp CSSSCHHHHH
T ss_pred CCCCCHHHHH
Confidence 3689999986
No 9
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=19.17 E-value=29 Score=22.58 Aligned_cols=9 Identities=44% Similarity=0.881 Sum_probs=7.4
Q ss_pred cccchhhhh
Q 037659 162 RSWTAEENR 170 (202)
Q Consensus 162 r~WTAEENR 170 (202)
+.||.||+.
T Consensus 9 ~~Wt~eED~ 17 (60)
T 2d9a_A 9 VKWTHEEDE 17 (60)
T ss_dssp SCCCHHHHH
T ss_pred CCCCHHHHH
Confidence 579999984
No 10
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=18.31 E-value=31 Score=23.45 Aligned_cols=9 Identities=44% Similarity=0.992 Sum_probs=7.6
Q ss_pred cccchhhhh
Q 037659 162 RSWTAEENR 170 (202)
Q Consensus 162 r~WTAEENR 170 (202)
+.||.||+.
T Consensus 9 ~~WT~eEd~ 17 (75)
T 2yum_A 9 QLWTVEEQK 17 (75)
T ss_dssp SCCCHHHHH
T ss_pred CCCCHHHHH
Confidence 579999985
Done!