BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037660
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 118/263 (44%), Gaps = 12/263 (4%)
Query: 7 PKILVVDLCNENLKPGTSTWISTC-NEIRQAMEDTGCFEAIYNKIPLELHNEIFKAADEL 65
P++ +DL +N++ C E+++A D G I + IP +L + KA +E
Sbjct: 45 PQVPTIDL--KNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEF 102
Query: 66 FDLPIETKMQNTSDKPYHEYFGQYTGIPLYESLAI---DDPTNLTATQSFTD-RMWPNGN 121
F L +E K + +D+ + G + + S + D +L + D +WP
Sbjct: 103 FSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP 162
Query: 122 PPFCESVHSFAKIIVEVDQLVMRMIMESYGIE-KYYDSHIETSNYLLRFFK---YRKPEI 177
+ E+ +AK + + V + + G+E + + LL K Y K
Sbjct: 163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQ 222
Query: 178 NEHNVGLYPHTDKNMVSIIHQNHINGLQIKAKDGEWIDLEPSPSSFVIMAADGLLAWSNG 237
E +G+ HTD + ++ I N + GLQ+ +G+W+ + P S V+ D L SNG
Sbjct: 223 PELALGVEAHTDVSALTFILHNMVPGLQL-FYEGKWVTAKCVPDSIVMHIGDTLEILSNG 281
Query: 238 RIRSCEHQVIINAHETRYSMGLF 260
+ +S H+ ++N + R S +F
Sbjct: 282 KYKSILHRGLVNKEKVRISWAVF 304
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 118/263 (44%), Gaps = 12/263 (4%)
Query: 7 PKILVVDLCNENLKPGTSTWISTC-NEIRQAMEDTGCFEAIYNKIPLELHNEIFKAADEL 65
P++ +DL +N++ C E+++A D G I + IP +L + KA +E
Sbjct: 44 PQVPTIDL--KNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEF 101
Query: 66 FDLPIETKMQNTSDKPYHEYFGQYTGIPLYESLAI---DDPTNLTATQSFTD-RMWPNGN 121
F L +E K + +D+ + G + + S + D +L + D +WP
Sbjct: 102 FSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP 161
Query: 122 PPFCESVHSFAKIIVEVDQLVMRMIMESYGIE-KYYDSHIETSNYLLRFFK---YRKPEI 177
+ E+ +AK + + V + + G+E + + LL K Y K
Sbjct: 162 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQ 221
Query: 178 NEHNVGLYPHTDKNMVSIIHQNHINGLQIKAKDGEWIDLEPSPSSFVIMAADGLLAWSNG 237
E +G+ HTD + ++ I N + GLQ+ +G+W+ + P S V+ D L SNG
Sbjct: 222 PELALGVEAHTDVSALTFILHNMVPGLQL-FYEGKWVTAKCVPDSIVMHIGDTLEILSNG 280
Query: 238 RIRSCEHQVIINAHETRYSMGLF 260
+ +S H+ ++N + R S +F
Sbjct: 281 KYKSILHRGLVNKEKVRISWAVF 303
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 117/263 (44%), Gaps = 12/263 (4%)
Query: 7 PKILVVDLCNENLKPGTSTWISTC-NEIRQAMEDTGCFEAIYNKIPLELHNEIFKAADEL 65
P++ +DL +N++ C E+++A D G I + IP +L + KA +E
Sbjct: 45 PQVPTIDL--KNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEF 102
Query: 66 FDLPIETKMQNTSDKPYHEYFGQYTGIPLYESLAI---DDPTNLTATQSFTD-RMWPNGN 121
F L +E K + +D+ + G + + S + D +L + D +WP
Sbjct: 103 FSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP 162
Query: 122 PPFCESVHSFAKIIVEVDQLVMRMIMESYGIE-KYYDSHIETSNYLLRFFK---YRKPEI 177
+ E+ +AK + + V + + G+E + + LL K Y K
Sbjct: 163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQ 222
Query: 178 NEHNVGLYPHTDKNMVSIIHQNHINGLQIKAKDGEWIDLEPSPSSFVIMAADGLLAWSNG 237
E +G+ HTD + ++ I N + GLQ+ +G+W+ + P S V D L SNG
Sbjct: 223 PELALGVEAHTDVSALTFILHNXVPGLQL-FYEGKWVTAKCVPDSIVXHIGDTLEILSNG 281
Query: 238 RIRSCEHQVIINAHETRYSMGLF 260
+ +S H+ ++N + R S +F
Sbjct: 282 KYKSILHRGLVNKEKVRISWAVF 304
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 112/254 (44%), Gaps = 34/254 (13%)
Query: 28 STCNEIRQAMEDTGCFEAIYNKIPLELHNEIFKAADELFDLPIETKMQNTSDKPYHEYFG 87
+T I+ A E+ G FE + + IP E+ + + E + K + F
Sbjct: 19 ATXEXIKDACENWGFFELVNHGIPREVXDTV------------EKXTKGHYKKCXEQRFK 66
Query: 88 QYTGIPLYESLAIDDPTNLTATQSFTDRMWPNGN--------PPFCESVHSFAKIIVEVD 139
+ E + + T+ +F + P N + E FAK + ++
Sbjct: 67 ELVASKALEGVQAE-VTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFAKRLEKLA 125
Query: 140 QLVMRMIMESYGIEKYYDSHI----ETSNYLLRFFKYR---KPEINEHNVGLYPHTDKNM 192
+ ++ ++ E+ G+EK Y + + N+ + Y KP++ + GL HTD
Sbjct: 126 EELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIK---GLRAHTDAGG 182
Query: 193 VSIIHQN-HINGLQIKAKDGEWIDLEPSPSSFVIMAADGLLAWSNGRIRSCEHQVIINAH 251
+ ++ Q+ ++GLQ+ KDG+WID+ P S V+ D L +NG+ +S H+VI
Sbjct: 183 IILLFQDDKVSGLQL-LKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKD 241
Query: 252 ETRYSMGLFSFNRG 265
R S+ F +N G
Sbjct: 242 GARXSLASF-YNPG 254
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 11/205 (5%)
Query: 61 AADELFDLPIETKMQNTSDKPYHEY---FGQYTG-------IPLYESLAIDDPTNLTATQ 110
+A F LP+ETK Q K FG T + + D P
Sbjct: 54 SAKAFFALPVETKKQYAGVKGGARGYIPFGVETAKGADHYDLKEFWHXGRDLPPGHRFRA 113
Query: 111 SFTDRMWPNGNPPFCESVHSFAKIIVEVDQLVMRMIMESYGIEK-YYDSHIETSNYLLRF 169
D +WP P F V + V+ I +E+ ++ ++ N +LR
Sbjct: 114 HXADNVWPAEIPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRL 173
Query: 170 FKYRKPEINEHNVGLYPHTDKNMVSIIHQNHINGLQIKAKDGEWIDLEPSPSSFVIMAAD 229
Y + V H D N ++++ GL++ +DG+W+ + P P VI D
Sbjct: 174 LHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGD 233
Query: 230 GLLAWSNGRIRSCEHQVIINAHETR 254
L +N + S H+V+ E R
Sbjct: 234 XLERLTNNVLPSTVHRVVNPPPERR 258
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 166 LLRFFKYRKPEINEHNVGLY---PHTDKNMVSIIHQNHINGLQIKAKDGEWIDLEPSPSS 222
LLR Y P + G H D N+++++ + GLQ+KAKDG W+D+ +
Sbjct: 151 LLRILHY-PPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGN 209
Query: 223 FVIMAADGLLAWSNGRIRSCEHQVI----INAHETRYSMGLF 260
+I D L S+G S H+VI + ++R S+ LF
Sbjct: 210 IIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLF 251
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/292 (19%), Positives = 119/292 (40%), Gaps = 39/292 (13%)
Query: 1 MGSQTQ---PKILVVDLCNENLKPGTSTWISTCNEIRQAMEDTGCFEAIYNKIPLELHNE 57
MGS ++ PKI V L ++ + + +I A DTG F A+ + I ++ ++
Sbjct: 1 MGSVSKANVPKIDVSPLFGDD----QAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQ 56
Query: 58 IFK------AADELFDLPIETKMQNTSDKPYHEYFGQYTGIPLYESLAI-------DDPT 104
K +E +DL I + D+ Y+ G ES D P
Sbjct: 57 KTKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPR 116
Query: 105 NLTATQSFTDRMWPN--GNPPFCESVHSFAKIIVEVDQLVMRMIMESYGIEK-YYDSHIE 161
T + +WP+ +P F + + + + +++ + G E+ ++ H +
Sbjct: 117 IQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFK 176
Query: 162 TSNYLLRFFKYRKPEINEH------------NVGLYPHTDKNMVSIIHQNHINGLQIKAK 209
+ L R P ++ + + H D +++++++Q+++ LQ++
Sbjct: 177 PDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETA 236
Query: 210 DGEWIDLEPSPSSFVIMAADGLLAWSNGRIRSCEHQV-IINAHETRYSMGLF 260
G + D+E + ++I + +N ++ H+V +NA R S+ F
Sbjct: 237 AG-YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE--RQSLPFF 285
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/292 (19%), Positives = 119/292 (40%), Gaps = 39/292 (13%)
Query: 1 MGSQTQ---PKILVVDLCNENLKPGTSTWISTCNEIRQAMEDTGCFEAIYNKIPLELHNE 57
MGS ++ PKI V L ++ + + +I A DTG F A+ + I ++ ++
Sbjct: 1 MGSVSKANVPKIDVSPLFGDD----QAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQ 56
Query: 58 IFK------AADELFDLPIETKMQNTSDKPYHEYFGQYTGIPLYESLAI-------DDPT 104
K +E +DL I + D+ Y+ G ES D P
Sbjct: 57 KTKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPR 116
Query: 105 NLTATQSFTDRMWPN--GNPPFCESVHSFAKIIVEVDQLVMRMIMESYGIEK-YYDSHIE 161
T + +WP+ +P F + + + + +++ + G E+ ++ H +
Sbjct: 117 IQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFK 176
Query: 162 TSNYLLRFFKYRKPEINEH------------NVGLYPHTDKNMVSIIHQNHINGLQIKAK 209
+ L R P ++ + + H D +++++++Q+++ LQ++
Sbjct: 177 PDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETA 236
Query: 210 DGEWIDLEPSPSSFVIMAADGLLAWSNGRIRSCEHQV-IINAHETRYSMGLF 260
G + D+E + ++I + +N ++ H+V +NA R S+ F
Sbjct: 237 AG-YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE--RQSLPFF 285
>pdb|3VPV|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Tsi2
pdb|3VPV|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Tsi2
Length = 85
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 42 CFEAIYNKIPLELHNEIFKAADELFDLPIETKMQNTSDK-PYHEYFGQYTGIPLYESLAI 100
C A ++ +L N+ + A EL L + + K Y + GQY+G+P Y+ L I
Sbjct: 14 CVAARTRELDAQLQNDDPQNAAELEQLLVGYDLAADDLKNAYEQALGQYSGLPPYDRL-I 72
Query: 101 DDPTNL 106
++P +L
Sbjct: 73 EEPASL 78
>pdb|3RQ9|A Chain A, Structure Of Tsi2, A Tse2-Immunity Protein From
Pseudomonas Aeruginosa
pdb|3RQ9|B Chain B, Structure Of Tsi2, A Tse2-Immunity Protein From
Pseudomonas Aeruginosa
Length = 85
Score = 30.0 bits (66), Expect = 1.6, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 18 NLKPGTSTWISTCNEIRQAMEDTGCFEAIYNKIPLELHNEIFKAADELFDLPIETKMQNT 77
NLKP T M C A ++ +L N+ + A EL L + +
Sbjct: 2 NLKPQT------------LMVAIQCVAARTRELDAQLQNDDPQNAAELEQLLVGYDLAAD 49
Query: 78 SDK-PYHEYFGQYTGIPLYESLAIDDPTNL 106
K Y + GQY+G+P Y+ L I++P +L
Sbjct: 50 DLKNAYEQALGQYSGLPPYDRL-IEEPASL 78
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 220 PSSFVIMAADGLLAWSNGRIRSCEHQVIINAHETRY 255
P F++ +G LA +GR+ S + + IN H+ +Y
Sbjct: 29 PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKY 64
>pdb|3STQ|A Chain A, Hypothetical Protein Pa2703 Pseudomonas Aeruginosa Pao1
pdb|3STQ|B Chain B, Hypothetical Protein Pa2703 Pseudomonas Aeruginosa Pao1
pdb|3STQ|C Chain C, Hypothetical Protein Pa2703 Pseudomonas Aeruginosa Pao1
pdb|3STQ|D Chain D, Hypothetical Protein Pa2703 Pseudomonas Aeruginosa Pao1
pdb|3STQ|E Chain E, Hypothetical Protein Pa2703 Pseudomonas Aeruginosa Pao1
pdb|3STQ|F Chain F, Hypothetical Protein Pa2703 Pseudomonas Aeruginosa Pao1
Length = 102
Score = 28.5 bits (62), Expect = 5.3, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 42 CFEAIYNKIPLELHNEIFKAADELFDLPIETKMQNTSDK-PYHEYFGQYTGIPLYESLAI 100
C A ++ +L N+ + A EL L + + K Y + GQY+G+P Y+ L I
Sbjct: 39 CVAARTRELDAQLQNDDPQNAAELEQLLVGYDLAADDLKNAYEQALGQYSGLPPYDRL-I 97
Query: 101 DDPTN 105
++P +
Sbjct: 98 EEPAS 102
>pdb|3F6A|A Chain A, Crystal Structure Of A Hydrolase, Nudix Family From
Clostridium Perfringens
pdb|3F6A|B Chain B, Crystal Structure Of A Hydrolase, Nudix Family From
Clostridium Perfringens
Length = 159
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 33 IRQAMEDTGCFEAIYNKIPLELHNEIFKAADELFDLPIETKMQNTSDKPYHEYFGQYTGI 92
IR+A E+ G +YN I + L + ++L PI T + + S H F Y
Sbjct: 48 IREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATT 107
Query: 93 PLYES 97
+E+
Sbjct: 108 TSFET 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,159,621
Number of Sequences: 62578
Number of extensions: 441047
Number of successful extensions: 916
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 903
Number of HSP's gapped (non-prelim): 20
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)