BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037661
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 8/78 (10%)
Query: 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKL------INEAWE 143
KK WY++LG D A + +K++Y+ L+ ++ PD+ S+ V A T + I++AW+
Sbjct: 9 KKDWYSILG-ADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWK 67
Query: 144 VLSDPKRREAYDLLMCFD 161
+L + + + YDL C D
Sbjct: 68 ILGNEETKREYDLQRCED 85
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKL------INEAWE 143
KK WY++LG D A + +K++Y+ L+ L+ PD+ S+ V A T + I++AW+
Sbjct: 15 KKDWYSILGA-DPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73
Query: 144 VLSDPKRREAYDL 156
+L + + ++ YDL
Sbjct: 74 ILGNEETKKKYDL 86
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 88 AAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSD 147
+E K +YA++G++ + IK Y L + + PD A+ K + EAWEVLSD
Sbjct: 1 GSELKDYYAIMGVKP-TDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSD 59
Query: 148 PKRREAYDLL 157
+RR YD +
Sbjct: 60 EQRRAEYDQM 69
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 88 AAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSD 147
A E K +YA+LG++ + IK Y L + + PD A+ K + EAWEVL D
Sbjct: 24 AMELKDYYAILGVQP-TDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKD 82
Query: 148 PKRREAYDLL 157
+RR YD L
Sbjct: 83 EQRRAEYDQL 92
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 94 WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREA 153
+Y +LG+ + D +KK Y L F PD+ + GA A K I A+ VLS+P++R+
Sbjct: 9 YYEILGVSRGASDED-LKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 154 YD 155
YD
Sbjct: 68 YD 69
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 93 SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152
++Y VLG++ + A + +KK Y L + PD+ + G K I++A+EVLSD K+RE
Sbjct: 7 TYYDVLGVKPN-ATQEELKKAYRKLALKYHPDKNPNEGEKF--KQISQAYEVLSDAKKRE 63
Query: 153 AYD 155
YD
Sbjct: 64 LYD 66
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRR 151
K +Y LG+ A + IK+ Y + PD+ GA+ K I EA++VLSDP++R
Sbjct: 3 KDYYQTLGLA-RGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 152 EAYD 155
E +D
Sbjct: 62 EIFD 65
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 94 WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREA 153
+Y +LG+ A IKK + L + PD+ S A+ + I EA+E LSD RR+
Sbjct: 9 YYDILGV-PKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKE 67
Query: 154 YDLL 157
YD L
Sbjct: 68 YDTL 71
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 94 WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRC--SSVGADTANKLINEAWEVLSDPKRR 151
+Y VLG++ A + IKK Y L + PD+ + A+ KL++EA+EVLSD K+R
Sbjct: 11 YYEVLGVQ-ASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 152 EAYDLLMC 159
YD C
Sbjct: 70 SLYDRAGC 77
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPK 149
K+ +Y +LG+ A I+K Y+ L + PDR A+ K I EA+EVL+D +
Sbjct: 2 KQDYYEILGV-SKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 150 RREAYD 155
+R AYD
Sbjct: 61 KRAAYD 66
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 93 SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152
+Y VLG++ A + +KK Y + F PD+ GA+ K I++A+EVLSD K+R+
Sbjct: 9 GYYDVLGVKPD-ASDNELKKAYRKMALKFHPDKNPD-GAEQF-KQISQAYEVLSDEKKRQ 65
Query: 153 AYD 155
YD
Sbjct: 66 IYD 68
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPK 149
K+ +Y +LG+ A I+K Y+ L + PDR A+ K I EA+EVL+D +
Sbjct: 2 KQDYYEILGVS-KTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 150 RREAYD 155
+R AYD
Sbjct: 61 KRAAYD 66
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPK 149
K+ +Y +LG+ A I+K Y+ L + PDR A+ K I EA+EVL+D +
Sbjct: 2 KQDYYEILGV-SKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 150 RREAYD 155
+R AYD
Sbjct: 61 KRAAYD 66
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 87 LAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKL--INEAWEV 144
L+ +S Y VLG+ D A D IKK Y L + PD+ + A+K IN A +
Sbjct: 12 LSTSGESLYHVLGL-DKNATSDDIKKSYRKLALKYHPDKNPD-NPEAADKFKEINNAHAI 69
Query: 145 LSDPKRREAYD 155
L+D +R YD
Sbjct: 70 LTDATKRNIYD 80
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 76 NSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTAN 135
S + ++ L+A Y VLG+ + D IKK Y+ L + + PD+ GA+
Sbjct: 1 GSSGSSGILQSLSALDFDPYRVLGVSRTASQAD-IKKAYKKLAREWHPDKNKDPGAEDRF 59
Query: 136 KLINEAWEVLSDPKRREAYD 155
I++A+E+LS+ ++R YD
Sbjct: 60 IQISKAYEILSNEEKRTNYD 79
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 95 YAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAY 154
Y +LG+ A +KK Y + PD+ + G K I+EA+E+L+DP++RE Y
Sbjct: 11 YDLLGVSPS-ANEQELKKGYRKAALKYHPDKPT--GDTEKFKEISEAFEILNDPQKREIY 67
Query: 155 D 155
D
Sbjct: 68 D 68
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGI 100
A K AE EE D A+ + A+ N N Q + ++K+ +Y +LG+
Sbjct: 331 ALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390
Query: 101 RDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKL----INEAWEVLSDPKRREAYD 155
+ + ++IK Y L + PD + + I A EVLSDP+ R+ +D
Sbjct: 391 KRNAKKQEIIKA-YRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGI 100
A K AE EE D A+ + A+ N N Q + ++K+ +Y +LG+
Sbjct: 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390
Query: 101 RDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKL----INEAWEVLSDPKRREAYD 155
+ + ++IK Y L + PD + + I A EVLSDP+ R+ +D
Sbjct: 391 KRNAKKQEIIKA-YRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 448
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 94 WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRC--SSVGADTANKLINEAWEVLSDPKRR 151
+Y VL + +A + IKK Y L + PD+ + A+ K + EA+EVLSD K+R
Sbjct: 11 YYEVLDV-PRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 152 EAYD 155
+ YD
Sbjct: 70 DIYD 73
>pdb|3VNN|A Chain A, Crystal Structure Of A Sub-Domain Of The
Nucleotidyltransferase (Adenylation) Domain Of Human Dna
Ligase Iv
Length = 139
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 54 KIDSALCVVDRARMK-NPNHQGLNSHFACYVVHKLA--AEKKSWYAV---LGIRDHRAGV 107
K D +C++D M NPN Q + + ++ ++ ++ Y V L + + + G
Sbjct: 53 KADIQICILDGEMMAYNPNTQTFMQKGTKFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGH 112
Query: 108 DVIKKRYEALVQLFKP 123
+ ++KRYE L +F P
Sbjct: 113 ETLRKRYEILSSIFTP 128
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 93 SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--ADTANKLINEAWEVLSDPKR 150
S+Y +L + A D IKK Y + PD+ A+ K + EA+EVLSD +
Sbjct: 3 SYYEILDV-PRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 151 REAYD 155
RE YD
Sbjct: 62 REIYD 66
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 94 WYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRC-SSVGADTANKLINEAWEVLSDPKRRE 152
+Y +LG+ A IKK Y L + + PD A + EA+EVLSD +R+
Sbjct: 9 YYQILGV-PRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 153 AYD 155
YD
Sbjct: 68 QYD 70
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 84 VHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWE 143
+ ++ K SW +LG++ A D + K Y L L PD+C + G++ A K + A
Sbjct: 20 IRRIRNSKDSW-DMLGVKPG-ASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNART 77
Query: 144 VL 145
L
Sbjct: 78 AL 79
>pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|B Chain B, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|C Chain C, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
Length = 171
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 94 WYAVLGI-RDHRAGVDVIKKRYEALVQLFKPDRCSS------VGADTANKLINEAWEVLS 146
++ + G+ ++ + R++ L + + PD+ +S + A + IN+AW+ L
Sbjct: 3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62
Query: 147 DPKRREAYDL-LMCFD 161
P R Y L L FD
Sbjct: 63 HPLMRAEYLLSLHGFD 78
>pdb|1HDR|A Chain A, The Crystallographic Structure Of A Human Dihydropteridine
Reductase Nadh Binary Complex Expressed In Escherichia
Coli By A Cdna Constructed From Its Rat Homologue
Length = 244
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 23 NPEAREALFSKLADKEAEASKHMAEE---LFKEEKIDSALCVVDRARMKNPNHQGL 75
N EA ++ K+ D E + + E L EEK+D+ LCV N + L
Sbjct: 45 NEEASASIIVKMTDSFTEQADQVTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSL 100
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 109 VIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMCFDK 162
++ ++ AL + F PD ++ A IN+A++ L DP RR Y L + +
Sbjct: 22 LLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTLKDPLRRAEYLLSL---Q 78
Query: 163 TVQIQAEN---QDP 173
++ AE QDP
Sbjct: 79 GIEXNAEQQTLQDP 92
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 110 IKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAY--DLLMCFDKTVQIQ 167
++K Y L PD G++ ++ L N+A+ L DP RR Y LL D T Q Q
Sbjct: 27 LRKEYRQLQAQHHPDMAQQ-GSEQSSTL-NQAYHTLKDPLRRSQYMLKLLRNIDLT-QEQ 83
Query: 168 AENQ----DPEM 175
N+ DP++
Sbjct: 84 TSNEVTTSDPQL 95
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 110 IKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAY--DLLMCFDKTVQIQ 167
++K Y L PD + G++ ++ L N+A+ L DP RR Y LL D T Q Q
Sbjct: 35 LRKEYRQLQAQHHPD-MAQQGSEQSSTL-NQAYHTLKDPLRRSQYMLKLLRNIDLT-QEQ 91
Query: 168 AENQ----DPEM 175
N+ DP++
Sbjct: 92 TSNEVTTSDPQL 103
>pdb|3CUX|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
Length = 528
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 22 NNPEAREALFSKL-ADKEAEA 41
NNPEA EA F K+ ADKE EA
Sbjct: 334 NNPEANEAAFEKVRADKEREA 354
>pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQL|B Chain B, Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQN|A Chain A, Complex Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQN|B Chain B, Complex Structure Of Bacterial Protein (Apo Form Ii)
Length = 415
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 115 EALVQLFKPDRCSSVGADT-------ANKLINEAWEVLSDPKRREAYDLL 157
EA L P R +++ D + + AW++L PK R AYDLL
Sbjct: 328 EACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLL 377
>pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I)
Length = 414
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 115 EALVQLFKPDRCSSVGADT-------ANKLINEAWEVLSDPKRREAYDLL 157
EA L P R +++ D + + AW++L PK R AYDLL
Sbjct: 327 EACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLL 376
>pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii)
pdb|3AQM|B Chain B, Structure Of Bacterial Protein (Form Ii)
Length = 415
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 115 EALVQLFKPDRCSSVGADT-------ANKLINEAWEVLSDPKRREAYDLL 157
EA L P R +++ D + + AW++L PK R AYDLL
Sbjct: 328 EACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLL 377
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,676,684
Number of Sequences: 62578
Number of extensions: 166436
Number of successful extensions: 622
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 39
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)