Query 037661
Match_columns 201
No_of_seqs 235 out of 1703
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0624 dsRNA-activated protei 99.9 2E-27 4.3E-32 208.8 13.8 155 21-188 335-493 (504)
2 COG0484 DnaJ DnaJ-class molecu 99.9 3.4E-25 7.4E-30 197.2 8.5 73 90-163 2-75 (371)
3 KOG0713 Molecular chaperone (D 99.9 1.6E-23 3.5E-28 183.0 8.2 74 89-163 13-87 (336)
4 KOG0550 Molecular chaperone (D 99.9 7.4E-22 1.6E-26 176.5 11.0 133 20-166 314-448 (486)
5 KOG0712 Molecular chaperone (D 99.9 4.5E-22 9.7E-27 175.2 7.3 88 91-181 3-90 (337)
6 PRK14288 chaperone protein Dna 99.8 1E-20 2.2E-25 170.0 7.6 69 92-161 3-72 (369)
7 PRK14296 chaperone protein Dna 99.8 1.2E-20 2.6E-25 169.7 7.4 70 91-161 3-72 (372)
8 PRK14287 chaperone protein Dna 99.8 1.3E-19 2.9E-24 162.9 8.5 70 91-161 3-72 (371)
9 PRK14298 chaperone protein Dna 99.8 1.2E-19 2.6E-24 163.4 7.8 70 91-161 4-73 (377)
10 PRK14279 chaperone protein Dna 99.8 9.2E-20 2E-24 165.0 6.9 68 91-159 8-76 (392)
11 PRK14299 chaperone protein Dna 99.8 2.5E-19 5.5E-24 156.2 9.0 70 91-161 3-72 (291)
12 PRK14291 chaperone protein Dna 99.8 2.4E-19 5.2E-24 161.7 8.8 70 91-161 2-71 (382)
13 PRK14286 chaperone protein Dna 99.8 1.8E-19 3.9E-24 162.1 7.4 70 91-161 3-73 (372)
14 PRK14276 chaperone protein Dna 99.8 2E-19 4.3E-24 162.2 7.5 70 91-161 3-72 (380)
15 PTZ00037 DnaJ_C chaperone prot 99.8 1.9E-19 4.2E-24 164.1 6.9 67 91-161 27-93 (421)
16 PRK14283 chaperone protein Dna 99.8 2.3E-19 5.1E-24 161.6 7.3 70 91-161 4-73 (378)
17 PRK14285 chaperone protein Dna 99.8 3.9E-19 8.5E-24 159.5 8.4 69 92-161 3-72 (365)
18 PF00226 DnaJ: DnaJ domain; I 99.8 4.2E-19 9.1E-24 121.0 5.8 62 93-155 1-64 (64)
19 PRK14282 chaperone protein Dna 99.8 4.6E-19 9.9E-24 159.2 7.6 70 91-161 3-74 (369)
20 PRK14280 chaperone protein Dna 99.8 5.1E-19 1.1E-23 159.3 7.5 69 92-161 4-72 (376)
21 PRK14278 chaperone protein Dna 99.8 4.7E-19 1E-23 159.7 7.1 68 92-160 3-70 (378)
22 PRK14301 chaperone protein Dna 99.8 7.9E-19 1.7E-23 158.0 8.2 70 91-161 3-73 (373)
23 PRK14294 chaperone protein Dna 99.8 1E-18 2.2E-23 156.8 7.5 70 91-161 3-73 (366)
24 PRK14277 chaperone protein Dna 99.8 1.1E-18 2.3E-23 157.7 7.5 70 91-161 4-74 (386)
25 PRK10767 chaperone protein Dna 99.8 1.7E-18 3.7E-23 155.5 7.8 70 91-161 3-73 (371)
26 PRK14297 chaperone protein Dna 99.7 1.3E-18 2.9E-23 156.7 6.9 70 91-161 3-73 (380)
27 PRK14295 chaperone protein Dna 99.7 1.8E-18 3.9E-23 156.4 7.5 68 92-160 9-81 (389)
28 PRK14284 chaperone protein Dna 99.7 2E-18 4.3E-23 156.2 7.6 69 92-161 1-70 (391)
29 PRK14281 chaperone protein Dna 99.7 2.7E-18 6E-23 155.6 7.2 69 92-161 3-72 (397)
30 TIGR02349 DnaJ_bact chaperone 99.7 4.3E-18 9.4E-23 152.0 7.4 69 93-162 1-69 (354)
31 PRK14300 chaperone protein Dna 99.7 4.3E-18 9.3E-23 153.1 7.2 69 92-161 3-71 (372)
32 PRK10266 curved DNA-binding pr 99.7 7.7E-18 1.7E-22 147.8 8.4 67 92-159 4-70 (306)
33 KOG0717 Molecular chaperone (D 99.7 1.5E-18 3.2E-23 156.7 3.9 69 90-159 6-76 (508)
34 KOG0715 Molecular chaperone (D 99.7 5.2E-18 1.1E-22 147.9 6.7 68 93-161 44-111 (288)
35 KOG0718 Molecular chaperone (D 99.7 5.3E-18 1.1E-22 153.3 6.7 72 91-163 8-83 (546)
36 PRK14292 chaperone protein Dna 99.7 7.2E-18 1.6E-22 151.5 7.2 69 92-161 2-70 (371)
37 KOG0716 Molecular chaperone (D 99.7 5.6E-18 1.2E-22 144.4 5.7 72 92-164 31-103 (279)
38 PRK14293 chaperone protein Dna 99.7 9.8E-18 2.1E-22 150.9 7.4 69 92-161 3-71 (374)
39 PRK14290 chaperone protein Dna 99.7 1.1E-17 2.4E-22 150.2 7.6 69 92-161 3-73 (365)
40 PTZ00341 Ring-infected erythro 99.7 4.3E-18 9.4E-23 164.9 5.1 73 90-163 571-643 (1136)
41 PRK14289 chaperone protein Dna 99.7 1.4E-17 3.1E-22 150.3 7.5 70 91-161 4-74 (386)
42 KOG0691 Molecular chaperone (D 99.7 5.4E-18 1.2E-22 147.7 4.1 74 91-165 4-78 (296)
43 smart00271 DnaJ DnaJ molecular 99.7 8.3E-17 1.8E-21 108.0 6.0 57 92-149 1-59 (60)
44 cd06257 DnaJ DnaJ domain or J- 99.7 2E-16 4.3E-21 104.2 6.3 54 93-147 1-55 (55)
45 KOG0719 Molecular chaperone (D 99.6 1.8E-16 3.9E-21 132.7 6.2 72 89-161 11-85 (264)
46 PHA03102 Small T antigen; Revi 99.6 6.6E-16 1.4E-20 123.1 5.2 69 92-164 5-75 (153)
47 TIGR03835 termin_org_DnaJ term 99.6 1.3E-15 2.7E-20 145.2 8.0 70 92-162 2-71 (871)
48 COG2214 CbpA DnaJ-class molecu 99.6 2E-15 4.3E-20 122.4 7.0 67 90-157 4-72 (237)
49 KOG0721 Molecular chaperone (D 99.6 3.8E-15 8.2E-20 123.6 7.2 72 91-163 98-170 (230)
50 PRK05014 hscB co-chaperone Hsc 99.5 9.9E-15 2.1E-19 118.5 7.2 67 92-159 1-75 (171)
51 PRK01356 hscB co-chaperone Hsc 99.5 2E-14 4.3E-19 116.3 7.2 67 92-159 2-74 (166)
52 PRK00294 hscB co-chaperone Hsc 99.5 5.6E-14 1.2E-18 114.3 7.6 69 90-159 2-78 (173)
53 KOG0720 Molecular chaperone (D 99.5 2.7E-14 5.8E-19 129.3 5.8 71 90-161 233-303 (490)
54 PRK03578 hscB co-chaperone Hsc 99.5 6.5E-14 1.4E-18 114.2 7.3 68 91-159 5-80 (176)
55 KOG0714 Molecular chaperone (D 99.4 2.6E-13 5.6E-18 115.1 4.9 71 91-162 2-74 (306)
56 KOG0722 Molecular chaperone (D 99.4 2.4E-13 5.3E-18 115.5 3.7 71 90-161 31-101 (329)
57 PTZ00100 DnaJ chaperone protei 99.3 3.7E-12 8E-17 97.1 5.5 51 92-146 65-115 (116)
58 PHA02624 large T antigen; Prov 99.3 1.1E-11 2.3E-16 117.0 8.9 60 91-154 10-71 (647)
59 PRK01773 hscB co-chaperone Hsc 99.3 1.6E-11 3.4E-16 99.9 7.3 68 92-159 2-76 (173)
60 PRK09430 djlA Dna-J like membr 99.2 6.8E-12 1.5E-16 108.5 5.4 55 92-147 200-262 (267)
61 COG5269 ZUO1 Ribosome-associat 99.2 1.1E-11 2.5E-16 106.2 3.0 107 88-199 39-153 (379)
62 COG5407 SEC63 Preprotein trans 99.1 7.9E-11 1.7E-15 106.9 5.9 73 91-164 97-175 (610)
63 TIGR00714 hscB Fe-S protein as 99.1 3E-10 6.5E-15 91.1 6.7 56 104-159 2-63 (157)
64 KOG1150 Predicted molecular ch 99.0 6.7E-10 1.5E-14 91.6 6.6 64 91-155 52-117 (250)
65 KOG0568 Molecular chaperone (D 98.3 9.5E-07 2.1E-11 74.8 5.2 60 89-149 44-104 (342)
66 KOG1789 Endocytosis protein RM 98.3 2E-06 4.3E-11 85.3 7.4 52 93-146 1282-1336(2235)
67 KOG0431 Auxilin-like protein a 98.3 3.9E-06 8.4E-11 77.7 9.0 117 23-146 324-449 (453)
68 KOG0723 Molecular chaperone (D 98.0 1.4E-05 3.1E-10 59.8 5.2 49 96-148 60-108 (112)
69 KOG3192 Mitochondrial J-type c 97.7 4.7E-05 1E-09 60.8 4.4 71 89-159 5-82 (168)
70 COG1076 DjlA DnaJ-domain-conta 97.2 0.0022 4.7E-08 52.1 8.4 53 92-145 113-173 (174)
71 KOG0543 FKBP-type peptidyl-pro 96.8 0.0031 6.7E-08 57.3 6.3 54 20-85 284-337 (397)
72 COG1076 DjlA DnaJ-domain-conta 96.5 0.0017 3.6E-08 52.8 2.4 67 93-159 2-75 (174)
73 PF07719 TPR_2: Tetratricopept 96.2 0.017 3.6E-07 33.1 5.0 34 39-72 1-34 (34)
74 PF13428 TPR_14: Tetratricopep 96.0 0.022 4.8E-07 35.3 5.0 39 42-80 4-42 (44)
75 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.14 3E-06 47.6 11.9 46 17-74 65-110 (453)
76 PF00515 TPR_1: Tetratricopept 95.9 0.029 6.3E-07 32.4 5.0 32 40-71 2-33 (34)
77 PF13371 TPR_9: Tetratricopept 95.7 0.027 5.8E-07 37.9 5.1 47 21-79 23-69 (73)
78 PF13414 TPR_11: TPR repeat; P 95.4 0.025 5.4E-07 37.7 3.9 37 22-70 32-69 (69)
79 PF14559 TPR_19: Tetratricopep 95.4 0.031 6.8E-07 37.0 4.3 35 46-80 32-66 (68)
80 PF13432 TPR_16: Tetratricopep 95.3 0.056 1.2E-06 35.6 5.4 39 22-72 26-64 (65)
81 PF13414 TPR_11: TPR repeat; P 94.8 0.07 1.5E-06 35.4 4.6 44 39-82 3-46 (69)
82 KOG4234 TPR repeat-containing 94.5 0.062 1.3E-06 45.5 4.5 69 46-119 141-213 (271)
83 PF03656 Pam16: Pam16; InterP 94.4 0.097 2.1E-06 40.7 5.2 53 95-151 61-113 (127)
84 PF13174 TPR_6: Tetratricopept 93.9 0.14 3.1E-06 28.8 4.1 31 41-71 2-32 (33)
85 TIGR02552 LcrH_SycD type III s 93.7 1.3 2.8E-05 32.8 10.2 54 16-81 6-59 (135)
86 PF13181 TPR_8: Tetratricopept 93.3 0.2 4.4E-06 28.6 4.1 32 40-71 2-33 (34)
87 PF14853 Fis1_TPR_C: Fis1 C-te 93.3 0.71 1.5E-05 30.3 7.0 44 42-85 4-47 (53)
88 KOG0553 TPR repeat-containing 92.8 0.23 4.9E-06 43.9 5.3 42 20-73 108-149 (304)
89 PF03704 BTAD: Bacterial trans 92.4 1.5 3.1E-05 33.5 9.0 52 29-80 52-103 (146)
90 PLN03088 SGT1, suppressor of 92.3 0.36 7.7E-06 43.3 6.2 48 21-80 30-77 (356)
91 PF14561 TPR_20: Tetratricopep 92.2 1.8 3.9E-05 31.3 8.6 36 37-72 20-55 (90)
92 PF13176 TPR_7: Tetratricopept 91.9 0.44 9.4E-06 28.2 4.3 28 42-69 2-29 (36)
93 PLN03088 SGT1, suppressor of 91.8 1.3 2.9E-05 39.6 9.3 40 41-80 4-43 (356)
94 PRK15359 type III secretion sy 91.5 0.69 1.5E-05 35.8 6.3 49 20-80 51-99 (144)
95 PF13432 TPR_16: Tetratricopep 91.4 0.41 8.9E-06 31.3 4.2 40 44-83 2-41 (65)
96 PRK15363 pathogenicity island 91.1 5.3 0.00011 32.1 11.1 27 46-72 42-68 (157)
97 KOG0624 dsRNA-activated protei 90.9 0.32 7E-06 44.2 4.2 84 21-119 66-151 (504)
98 PRK15359 type III secretion sy 90.8 0.65 1.4E-05 36.0 5.5 35 46-80 31-65 (144)
99 KOG0545 Aryl-hydrocarbon recep 90.6 0.69 1.5E-05 40.3 5.8 52 20-83 257-309 (329)
100 PF13512 TPR_18: Tetratricopep 90.6 1.8 3.9E-05 34.3 7.8 34 42-75 50-83 (142)
101 PRK10370 formate-dependent nit 90.6 0.74 1.6E-05 37.8 5.9 27 46-72 151-177 (198)
102 TIGR02552 LcrH_SycD type III s 90.6 1.1 2.3E-05 33.3 6.4 49 22-82 46-94 (135)
103 KOG0548 Molecular co-chaperone 90.3 2.5 5.3E-05 40.1 9.6 111 21-152 386-503 (539)
104 TIGR00990 3a0801s09 mitochondr 90.0 7 0.00015 37.2 12.8 36 37-72 125-160 (615)
105 PRK12370 invasion protein regu 89.8 6.5 0.00014 37.2 12.3 44 20-75 331-374 (553)
106 KOG0547 Translocase of outer m 89.7 0.88 1.9E-05 43.0 6.1 64 20-83 96-159 (606)
107 PRK15174 Vi polysaccharide exp 89.5 3.3 7.1E-05 40.2 10.3 108 44-154 289-413 (656)
108 KOG0553 TPR repeat-containing 89.3 4 8.7E-05 36.1 9.7 39 35-73 77-115 (304)
109 smart00028 TPR Tetratricopepti 89.3 0.8 1.7E-05 23.8 3.6 30 42-71 4-33 (34)
110 PRK10866 outer membrane biogen 89.3 4.5 9.8E-05 34.3 9.9 34 105-139 135-171 (243)
111 TIGR03504 FimV_Cterm FimV C-te 89.3 0.81 1.8E-05 28.9 4.0 25 43-67 3-27 (44)
112 PRK10370 formate-dependent nit 88.6 1.3 2.8E-05 36.4 5.9 46 36-81 70-115 (198)
113 PRK11189 lipoprotein NlpI; Pro 88.2 3.9 8.4E-05 35.4 8.9 32 44-75 103-134 (296)
114 KOG0724 Zuotin and related mol 87.9 0.31 6.8E-06 43.1 2.0 55 104-158 3-62 (335)
115 PF13431 TPR_17: Tetratricopep 87.9 0.53 1.2E-05 27.7 2.4 29 19-59 5-33 (34)
116 KOG0548 Molecular co-chaperone 87.8 0.72 1.6E-05 43.6 4.3 57 17-85 416-472 (539)
117 PF14559 TPR_19: Tetratricopep 87.8 1.3 2.8E-05 29.0 4.5 37 49-85 1-37 (68)
118 KOG4234 TPR repeat-containing 87.8 1.9 4.1E-05 36.7 6.4 38 35-72 91-128 (271)
119 COG3063 PilF Tfp pilus assembl 87.8 3.8 8.2E-05 35.2 8.2 68 40-126 36-103 (250)
120 COG5010 TadD Flp pilus assembl 86.2 2 4.3E-05 37.2 5.8 28 46-73 107-134 (257)
121 PF13429 TPR_15: Tetratricopep 85.5 2.6 5.7E-05 35.7 6.3 39 38-76 145-183 (280)
122 PF07219 HemY_N: HemY protein 85.1 5.3 0.00012 29.6 7.1 57 23-80 43-99 (108)
123 PF13374 TPR_10: Tetratricopep 85.0 2.9 6.3E-05 24.3 4.7 31 40-70 3-33 (42)
124 KOG0376 Serine-threonine phosp 84.4 0.85 1.8E-05 42.6 2.9 54 20-85 65-118 (476)
125 PF14863 Alkyl_sulf_dimr: Alky 84.2 6 0.00013 31.1 7.3 45 39-83 70-114 (141)
126 TIGR00990 3a0801s09 mitochondr 84.1 18 0.00039 34.4 11.9 42 21-74 359-400 (615)
127 PF10500 SR-25: Nuclear RNA-sp 83.2 0.74 1.6E-05 39.0 1.8 24 104-127 159-182 (225)
128 KOG0550 Molecular chaperone (D 83.2 4.9 0.00011 37.4 7.2 95 20-128 196-304 (486)
129 COG3063 PilF Tfp pilus assembl 82.9 5.4 0.00012 34.3 6.9 106 20-139 62-184 (250)
130 PF13371 TPR_9: Tetratricopept 82.7 3.2 6.9E-05 27.4 4.6 38 46-83 2-39 (73)
131 KOG3824 Huntingtin interacting 82.6 6.7 0.00014 35.5 7.6 69 34-102 111-181 (472)
132 PF04733 Coatomer_E: Coatomer 82.4 2.3 4.9E-05 37.2 4.7 64 45-126 207-270 (290)
133 PF10475 DUF2450: Protein of u 82.4 8.1 0.00018 33.6 8.2 86 40-148 128-213 (291)
134 PF13525 YfiO: Outer membrane 81.6 16 0.00036 29.7 9.3 33 42-74 45-77 (203)
135 PRK15179 Vi polysaccharide bio 81.2 22 0.00047 35.1 11.4 29 46-74 93-121 (694)
136 PF14687 DUF4460: Domain of un 80.6 3.8 8.2E-05 31.0 4.7 46 104-149 5-55 (112)
137 KOG2002 TPR-containing nuclear 80.0 5.8 0.00013 40.2 6.9 40 22-73 159-198 (1018)
138 PF02064 MAS20: MAS20 protein 79.7 7 0.00015 30.1 6.0 39 41-79 65-103 (121)
139 PRK12370 invasion protein regu 78.8 6.2 0.00013 37.3 6.6 34 42-75 375-408 (553)
140 COG4235 Cytochrome c biogenesi 78.4 10 0.00022 33.4 7.3 51 35-85 152-202 (287)
141 KOG4648 Uncharacterized conser 78.0 3.3 7.1E-05 37.9 4.2 30 42-71 100-129 (536)
142 PF07721 TPR_4: Tetratricopept 76.7 3.7 7.9E-05 22.4 2.8 23 41-63 3-25 (26)
143 PF13424 TPR_12: Tetratricopep 76.7 8.2 0.00018 25.8 5.2 30 39-68 5-34 (78)
144 PRK15363 pathogenicity island 76.4 12 0.00025 30.2 6.6 82 21-114 63-146 (157)
145 TIGR03302 OM_YfiO outer membra 76.4 39 0.00085 27.4 10.6 29 45-73 76-104 (235)
146 KOG1174 Anaphase-promoting com 76.2 8.2 0.00018 36.1 6.3 91 16-122 427-519 (564)
147 cd00189 TPR Tetratricopeptide 76.0 9.3 0.0002 24.2 5.2 31 43-73 4-34 (100)
148 PF13525 YfiO: Outer membrane 76.0 16 0.00034 29.8 7.5 55 27-81 129-183 (203)
149 PRK10049 pgaA outer membrane p 75.8 6.6 0.00014 38.7 6.1 43 21-75 387-429 (765)
150 cd00189 TPR Tetratricopeptide 75.3 13 0.00028 23.5 5.7 34 40-73 35-68 (100)
151 PRK10747 putative protoheme IX 75.3 4.5 9.7E-05 36.6 4.5 40 39-78 328-367 (398)
152 PRK11189 lipoprotein NlpI; Pro 75.2 5.6 0.00012 34.4 4.9 28 46-73 139-166 (296)
153 TIGR02521 type_IV_pilW type IV 74.6 11 0.00023 29.3 6.0 29 45-73 71-99 (234)
154 PF13446 RPT: A repeated domai 74.6 8.1 0.00018 25.6 4.5 26 93-119 6-31 (62)
155 PF09613 HrpB1_HrpK: Bacterial 74.5 8.5 0.00018 31.1 5.4 38 46-83 51-88 (160)
156 KOG0543 FKBP-type peptidyl-pro 74.2 7.8 0.00017 35.6 5.6 75 42-121 260-338 (397)
157 PLN03098 LPA1 LOW PSII ACCUMUL 73.7 23 0.0005 33.2 8.7 65 4-68 55-141 (453)
158 PF10516 SHNi-TPR: SHNi-TPR; 72.9 7.3 0.00016 23.8 3.6 28 41-68 3-30 (38)
159 KOG1420 Ca2+-activated K+ chan 72.7 2.2 4.7E-05 41.3 1.8 22 4-25 13-34 (1103)
160 KOG0547 Translocase of outer m 72.0 2.6 5.6E-05 40.0 2.1 40 21-72 388-427 (606)
161 PF04212 MIT: MIT (microtubule 71.8 13 0.00028 25.0 5.1 32 37-68 3-34 (69)
162 PF12569 NARP1: NMDA receptor- 71.4 35 0.00076 32.5 9.6 18 131-148 324-341 (517)
163 COG5552 Uncharacterized conser 71.2 18 0.00039 25.7 5.6 64 91-159 2-65 (88)
164 PF15469 Sec5: Exocyst complex 70.9 16 0.00035 29.2 6.4 77 46-126 93-173 (182)
165 PF12895 Apc3: Anaphase-promot 70.7 7.7 0.00017 26.6 3.9 42 38-80 24-65 (84)
166 TIGR03302 OM_YfiO outer membra 70.7 49 0.0011 26.8 9.3 31 43-73 170-200 (235)
167 KOG4648 Uncharacterized conser 70.6 8.4 0.00018 35.4 4.9 47 22-80 160-206 (536)
168 cd02679 MIT_spastin MIT: domai 70.0 11 0.00023 26.8 4.5 33 36-68 5-37 (79)
169 COG4105 ComL DNA uptake lipopr 69.9 50 0.0011 28.7 9.3 68 26-102 154-221 (254)
170 PF12487 DUF3703: Protein of u 69.8 29 0.00062 26.4 7.0 59 40-99 10-68 (112)
171 KOG3060 Uncharacterized conser 69.4 27 0.00059 30.6 7.6 42 39-80 154-195 (289)
172 PRK09782 bacteriophage N4 rece 69.3 66 0.0014 33.1 11.5 30 46-75 616-645 (987)
173 PRK11447 cellulose synthase su 69.3 68 0.0015 33.2 11.8 42 22-75 598-639 (1157)
174 PF13424 TPR_12: Tetratricopep 69.1 7.5 0.00016 26.0 3.5 31 39-69 46-76 (78)
175 PRK10803 tol-pal system protei 68.8 26 0.00056 30.2 7.5 27 46-72 149-176 (263)
176 COG4105 ComL DNA uptake lipopr 68.6 79 0.0017 27.4 10.9 27 46-72 41-67 (254)
177 TIGR00985 3a0801s04tom mitocho 67.7 24 0.00053 28.1 6.5 49 23-79 82-131 (148)
178 PRK05685 fliS flagellar protei 67.0 26 0.00057 27.0 6.5 45 22-70 22-66 (132)
179 PRK09782 bacteriophage N4 rece 65.5 1.4E+02 0.0029 30.9 12.9 26 46-71 583-608 (987)
180 TIGR00540 hemY_coli hemY prote 65.4 64 0.0014 29.1 9.7 49 24-72 69-117 (409)
181 TIGR02521 type_IV_pilW type IV 65.3 27 0.00059 26.9 6.5 30 46-75 142-171 (234)
182 KOG0376 Serine-threonine phosp 65.2 2 4.3E-05 40.2 -0.1 43 18-72 29-71 (476)
183 PF12895 Apc3: Anaphase-promot 64.9 10 0.00023 25.9 3.6 25 41-65 60-84 (84)
184 TIGR02795 tol_pal_ybgF tol-pal 64.8 18 0.00039 25.4 5.0 35 27-73 39-73 (119)
185 cd02684 MIT_2 MIT: domain cont 64.4 17 0.00036 25.4 4.5 34 36-69 3-36 (75)
186 PRK02603 photosystem I assembl 63.7 28 0.0006 27.3 6.3 33 40-72 36-68 (172)
187 PRK15174 Vi polysaccharide exp 62.5 18 0.00039 35.1 5.9 32 44-75 115-146 (656)
188 smart00745 MIT Microtubule Int 62.5 19 0.00041 24.6 4.5 32 37-68 6-37 (77)
189 KOG4626 O-linked N-acetylgluco 62.3 24 0.00052 34.8 6.5 27 46-72 395-421 (966)
190 PRK10049 pgaA outer membrane p 62.3 1.4E+02 0.003 29.5 12.1 39 41-79 51-89 (765)
191 PRK11447 cellulose synthase su 61.6 20 0.00043 37.1 6.3 45 20-76 55-99 (1157)
192 PF11833 DUF3353: Protein of u 61.4 16 0.00035 30.3 4.6 42 104-152 3-44 (194)
193 TIGR02795 tol_pal_ybgF tol-pal 61.2 53 0.0012 22.9 11.8 34 40-73 3-36 (119)
194 PF13512 TPR_18: Tetratricopep 60.8 81 0.0018 24.9 10.8 36 40-75 11-46 (142)
195 PRK10866 outer membrane biogen 60.7 56 0.0012 27.6 8.0 51 31-81 167-217 (243)
196 cd02683 MIT_1 MIT: domain cont 60.0 20 0.00044 25.1 4.3 32 37-68 4-35 (77)
197 cd02681 MIT_calpain7_1 MIT: do 59.4 22 0.00049 24.9 4.4 32 38-69 5-36 (76)
198 PRK10941 hypothetical protein; 59.2 30 0.00065 30.1 6.1 46 21-73 170-215 (269)
199 KOG1126 DNA-binding cell divis 59.1 12 0.00026 36.4 3.8 34 40-73 422-455 (638)
200 PRK14574 hmsH outer membrane p 58.8 90 0.0019 31.5 10.1 52 18-81 407-458 (822)
201 COG4783 Putative Zn-dependent 58.8 1.4E+02 0.0031 28.2 10.8 16 133-148 409-424 (484)
202 PRK15179 Vi polysaccharide bio 58.7 72 0.0016 31.5 9.3 53 18-82 111-163 (694)
203 PF12739 TRAPPC-Trs85: ER-Golg 58.6 52 0.0011 30.1 7.9 45 18-73 198-242 (414)
204 PRK10803 tol-pal system protei 58.3 28 0.0006 30.0 5.8 44 23-78 173-219 (263)
205 cd02680 MIT_calpain7_2 MIT: do 57.7 22 0.00047 25.0 4.1 33 37-69 4-36 (75)
206 CHL00033 ycf3 photosystem I as 57.4 87 0.0019 24.1 8.5 37 36-72 32-68 (168)
207 KOG0686 COP9 signalosome, subu 57.3 41 0.00088 31.4 6.8 73 27-101 137-210 (466)
208 COG5010 TadD Flp pilus assembl 56.8 28 0.0006 30.3 5.4 42 44-85 139-180 (257)
209 cd02678 MIT_VPS4 MIT: domain c 56.4 27 0.00059 24.0 4.5 32 37-68 4-35 (75)
210 PRK11788 tetratricopeptide rep 56.4 53 0.0011 28.6 7.4 33 43-75 253-285 (389)
211 TIGR02917 PEP_TPR_lipo putativ 56.2 25 0.00055 33.3 5.7 29 45-73 62-90 (899)
212 KOG0546 HSP90 co-chaperone CPR 56.2 22 0.00047 32.4 4.8 49 22-82 304-352 (372)
213 COG4235 Cytochrome c biogenesi 55.0 31 0.00067 30.4 5.5 40 22-73 222-261 (287)
214 TIGR00540 hemY_coli hemY prote 55.0 18 0.00038 32.7 4.2 35 42-76 338-374 (409)
215 PF10602 RPN7: 26S proteasome 54.8 48 0.001 26.7 6.3 45 32-76 28-73 (177)
216 PRK11906 transcriptional regul 54.7 33 0.00071 32.3 5.9 44 20-75 365-408 (458)
217 KOG3081 Vesicle coat complex C 54.2 1E+02 0.0022 27.3 8.5 64 45-126 213-276 (299)
218 PRK02603 photosystem I assembl 54.0 56 0.0012 25.5 6.5 37 39-75 72-108 (172)
219 CHL00033 ycf3 photosystem I as 53.9 52 0.0011 25.5 6.3 36 40-75 73-108 (168)
220 cd02656 MIT MIT: domain contai 53.4 33 0.00072 23.3 4.5 32 37-68 4-35 (75)
221 COG1516 FliS Flagellin-specifi 52.8 28 0.00061 27.2 4.4 46 23-72 19-64 (132)
222 PF11817 Foie-gras_1: Foie gra 52.3 46 0.001 28.1 6.1 38 35-72 174-211 (247)
223 PRK10153 DNA-binding transcrip 51.1 26 0.00057 33.2 4.8 28 46-73 460-487 (517)
224 PRK14574 hmsH outer membrane p 50.7 34 0.00074 34.4 5.7 28 46-73 457-484 (822)
225 TIGR00208 fliS flagellar biosy 50.4 40 0.00087 25.7 4.9 44 23-70 19-62 (124)
226 KOG1420 Ca2+-activated K+ chan 49.7 9.4 0.0002 37.1 1.5 20 5-24 18-37 (1103)
227 cd02682 MIT_AAA_Arch MIT: doma 49.6 49 0.0011 23.2 4.9 30 37-66 4-33 (75)
228 PF14346 DUF4398: Domain of un 49.5 45 0.00098 24.1 4.9 32 37-68 43-74 (103)
229 KOG0718 Molecular chaperone (D 49.4 46 0.00099 31.6 5.9 42 77-120 57-109 (546)
230 PRK10747 putative protoheme IX 48.5 55 0.0012 29.5 6.3 39 45-83 159-197 (398)
231 PF12862 Apc5: Anaphase-promot 48.1 52 0.0011 23.3 5.0 35 39-73 41-75 (94)
232 PF10041 DUF2277: Uncharacteri 47.8 99 0.0021 22.0 6.2 46 92-138 3-48 (78)
233 KOG4555 TPR repeat-containing 47.7 54 0.0012 26.3 5.3 30 46-75 50-79 (175)
234 PF14938 SNAP: Soluble NSF att 47.7 1.3E+02 0.0029 25.6 8.3 31 40-70 115-146 (282)
235 PLN02789 farnesyltranstransfer 47.7 34 0.00074 30.3 4.7 40 22-73 137-176 (320)
236 KOG4056 Translocase of outer m 47.1 92 0.002 24.7 6.4 46 23-76 73-118 (143)
237 cd02677 MIT_SNX15 MIT: domain 46.9 40 0.00086 23.5 4.1 33 37-69 4-36 (75)
238 TIGR02917 PEP_TPR_lipo putativ 46.7 57 0.0012 30.9 6.4 28 46-73 200-227 (899)
239 PF09976 TPR_21: Tetratricopep 46.5 53 0.0012 24.9 5.2 33 40-72 49-81 (145)
240 PF02561 FliS: Flagellar prote 46.5 41 0.00088 25.3 4.4 43 23-69 17-59 (122)
241 PHA03308 transcriptional regul 46.4 12 0.00027 37.2 1.8 25 104-128 1351-1375(1463)
242 KOG1174 Anaphase-promoting com 46.2 94 0.002 29.4 7.3 44 17-72 324-367 (564)
243 KOG1126 DNA-binding cell divis 44.3 74 0.0016 31.1 6.6 41 20-72 516-556 (638)
244 COG1729 Uncharacterized protei 43.9 2.2E+02 0.0048 24.8 9.8 33 41-73 143-175 (262)
245 cd05804 StaR_like StaR_like; a 43.1 74 0.0016 27.3 6.1 30 46-75 121-150 (355)
246 PLN03081 pentatricopeptide (PP 42.9 32 0.00068 33.3 4.1 28 42-69 90-117 (697)
247 TIGR00823 EIIA-LAC phosphotran 42.5 59 0.0013 24.0 4.6 37 35-71 13-49 (99)
248 smart00386 HAT HAT (Half-A-TPR 41.7 44 0.00096 17.7 3.1 22 53-74 1-22 (33)
249 cd00084 HMG-box High Mobility 41.6 75 0.0016 20.2 4.6 43 111-157 12-54 (66)
250 PF07709 SRR: Seven Residue Re 41.5 18 0.00039 17.1 1.1 13 134-146 2-14 (14)
251 TIGR02561 HrpB1_HrpK type III 41.5 47 0.001 26.6 4.1 37 46-82 51-87 (153)
252 COG2912 Uncharacterized conser 41.0 51 0.0011 28.8 4.6 28 46-73 222-249 (269)
253 PHA02053 hypothetical protein 40.8 1.5E+02 0.0033 22.1 8.2 86 56-147 24-111 (115)
254 KOG1173 Anaphase-promoting com 40.7 61 0.0013 31.4 5.4 33 48-80 498-530 (611)
255 KOG3442 Uncharacterized conser 40.1 70 0.0015 24.9 4.7 48 95-146 62-109 (132)
256 PLN03014 carbonic anhydrase 39.9 17 0.00037 32.9 1.6 11 19-29 67-77 (347)
257 PF08969 USP8_dimer: USP8 dime 39.7 68 0.0015 23.8 4.7 32 38-69 37-68 (115)
258 PRK09591 celC cellobiose phosp 39.5 71 0.0015 23.8 4.6 63 36-102 17-79 (104)
259 cd00215 PTS_IIA_lac PTS_IIA, P 39.4 72 0.0016 23.4 4.6 63 36-102 12-74 (97)
260 PF12688 TPR_5: Tetratrico pep 38.2 1.1E+02 0.0024 23.1 5.7 31 42-72 4-34 (120)
261 TIGR00756 PPR pentatricopeptid 37.8 67 0.0014 17.1 3.5 23 45-67 6-28 (35)
262 COG3629 DnrI DNA-binding trans 37.2 2.9E+02 0.0063 24.3 11.4 47 30-76 144-190 (280)
263 KOG1156 N-terminal acetyltrans 37.2 2.5E+02 0.0054 27.8 8.9 31 46-76 412-442 (700)
264 KOG4849 mRNA cleavage factor I 37.1 2.3E+02 0.0049 26.1 8.1 72 26-99 361-437 (498)
265 PF12688 TPR_5: Tetratrico pep 36.9 1.7E+02 0.0037 22.1 6.5 35 39-73 38-72 (120)
266 cd01388 SOX-TCF_HMG-box SOX-TC 36.5 88 0.0019 21.0 4.5 42 112-157 14-55 (72)
267 cd01390 HMGB-UBF_HMG-box HMGB- 36.5 97 0.0021 19.8 4.6 40 114-157 15-54 (66)
268 PF02255 PTS_IIA: PTS system, 36.4 84 0.0018 22.9 4.6 34 36-69 11-44 (96)
269 PF09976 TPR_21: Tetratricopep 36.3 63 0.0014 24.4 4.1 21 45-65 124-144 (145)
270 PF02216 B: B domain; InterPr 36.1 36 0.00079 22.4 2.3 33 90-126 9-41 (54)
271 COG2956 Predicted N-acetylgluc 36.0 3.5E+02 0.0075 24.8 10.4 23 132-154 249-271 (389)
272 COG3071 HemY Uncharacterized e 36.0 2.5E+02 0.0053 26.1 8.3 116 42-162 156-310 (400)
273 PF12569 NARP1: NMDA receptor- 35.2 4.1E+02 0.0088 25.4 10.7 28 46-73 45-72 (517)
274 PF07637 PSD5: Protein of unkn 34.9 1.4E+02 0.003 19.9 5.1 45 27-71 12-57 (64)
275 PF04505 Dispanin: Interferon- 34.9 53 0.0011 23.2 3.2 23 46-68 44-66 (82)
276 PF13429 TPR_15: Tetratricopep 34.8 96 0.0021 26.0 5.4 34 44-77 219-252 (280)
277 PLN02789 farnesyltranstransfer 34.4 75 0.0016 28.2 4.8 41 20-72 64-105 (320)
278 KOG1076 Translation initiation 34.3 90 0.002 31.1 5.5 47 23-81 649-698 (843)
279 PRK15331 chaperone protein Sic 33.9 2.5E+02 0.0053 22.8 7.3 40 35-74 33-72 (165)
280 PTZ00112 origin recognition co 33.6 23 0.00051 36.4 1.6 19 50-68 970-988 (1164)
281 PF04781 DUF627: Protein of un 33.5 1.4E+02 0.003 22.6 5.4 30 45-74 2-31 (111)
282 PF07720 TPR_3: Tetratricopept 33.4 1.1E+02 0.0023 18.2 4.8 30 42-71 4-35 (36)
283 KOG1497 COP9 signalosome, subu 33.3 1.2E+02 0.0026 27.6 5.8 45 39-83 144-190 (399)
284 PF10849 DUF2654: Protein of u 33.2 1.3E+02 0.0028 21.0 4.7 37 35-71 12-48 (70)
285 PF13812 PPR_3: Pentatricopept 33.1 85 0.0018 16.9 3.5 23 45-67 7-29 (34)
286 KOG3364 Membrane protein invol 32.3 96 0.0021 24.7 4.5 43 42-84 74-116 (149)
287 KOG4642 Chaperone-dependent E3 32.1 62 0.0014 28.3 3.7 41 21-73 38-78 (284)
288 cd01389 MATA_HMG-box MATA_HMG- 31.9 1.2E+02 0.0025 20.6 4.5 43 110-156 12-54 (77)
289 PRK14720 transcript cleavage f 31.8 4.6E+02 0.01 27.0 10.2 39 43-81 35-73 (906)
290 PRK10454 PTS system N,N'-diace 31.6 1.1E+02 0.0023 23.3 4.6 64 35-102 27-90 (115)
291 PLN03014 carbonic anhydrase 31.2 3.3E+02 0.0073 24.7 8.3 23 51-73 79-101 (347)
292 KOG1128 Uncharacterized conser 31.1 1.5E+02 0.0033 29.7 6.5 101 22-147 468-568 (777)
293 KOG1155 Anaphase-promoting com 31.0 4.9E+02 0.011 25.0 11.1 109 21-154 358-488 (559)
294 smart00685 DM14 Repeats in fly 30.8 1.7E+02 0.0036 19.6 4.9 31 40-70 9-39 (59)
295 COG2015 Alkyl sulfatase and re 30.6 1E+02 0.0022 29.6 5.1 43 38-80 451-493 (655)
296 PF15290 Syntaphilin: Golgi-lo 30.1 95 0.002 27.5 4.5 27 20-52 49-75 (305)
297 COG3118 Thioredoxin domain-con 30.0 1.6E+02 0.0035 26.2 6.0 76 23-100 117-193 (304)
298 PF01535 PPR: PPR repeat; Int 30.0 84 0.0018 16.5 2.9 23 45-67 6-28 (31)
299 PF12854 PPR_1: PPR repeat 29.9 84 0.0018 18.0 3.0 20 45-64 13-32 (34)
300 PF06552 TOM20_plant: Plant sp 29.9 1.2E+02 0.0026 25.1 4.9 61 19-80 61-121 (186)
301 PF12434 Malate_DH: Malate deh 29.9 59 0.0013 18.5 2.1 17 106-122 9-25 (28)
302 KOG2376 Signal recognition par 29.9 4.7E+02 0.01 25.7 9.4 29 45-73 116-144 (652)
303 PLN02673 quinolinate synthetas 29.8 31 0.00067 34.1 1.7 35 38-72 81-116 (724)
304 cd05804 StaR_like StaR_like; a 29.7 71 0.0015 27.4 3.8 29 43-71 152-180 (355)
305 KOG4642 Chaperone-dependent E3 29.4 2.5E+02 0.0054 24.6 6.9 35 39-73 10-44 (284)
306 COG2956 Predicted N-acetylgluc 29.3 82 0.0018 28.7 4.1 30 43-72 218-247 (389)
307 KOG2997 F-box protein FBX9 [Ge 29.0 1.2E+02 0.0027 27.4 5.1 41 37-77 17-57 (366)
308 KOG4162 Predicted calmodulin-b 28.9 5.5E+02 0.012 26.0 9.9 81 46-149 691-771 (799)
309 KOG0775 Transcription factor S 28.6 1.4E+02 0.0031 26.4 5.3 54 45-102 69-126 (304)
310 PF08447 PAS_3: PAS fold; Int 28.3 12 0.00025 25.4 -1.1 31 91-126 5-36 (91)
311 PF09295 ChAPs: ChAPs (Chs5p-A 28.0 1.8E+02 0.0038 26.8 6.2 32 43-74 238-269 (395)
312 COG1729 Uncharacterized protei 27.9 1.1E+02 0.0024 26.6 4.6 41 45-85 184-224 (262)
313 PRK11788 tetratricopeptide rep 27.9 4E+02 0.0086 23.0 10.8 29 45-73 186-214 (389)
314 KOG0527 HMG-box transcription 27.7 67 0.0014 28.9 3.3 40 112-155 75-114 (331)
315 KOG4626 O-linked N-acetylgluco 27.7 84 0.0018 31.2 4.1 46 29-74 329-389 (966)
316 smart00671 SEL1 Sel1-like repe 27.6 1.1E+02 0.0025 16.7 3.6 28 41-68 3-34 (36)
317 PF13041 PPR_2: PPR repeat fam 27.3 1.5E+02 0.0033 17.9 4.8 35 45-79 9-45 (50)
318 KOG1586 Protein required for f 26.7 95 0.0021 27.1 3.9 41 33-73 67-107 (288)
319 PF05168 HEPN: HEPN domain; I 26.1 1.8E+02 0.004 20.4 5.0 29 38-66 7-35 (118)
320 COG3947 Response regulator con 25.8 2.6E+02 0.0056 25.3 6.5 36 44-79 284-319 (361)
321 PF14938 SNAP: Soluble NSF att 25.2 4.2E+02 0.0092 22.4 9.1 15 108-122 132-146 (282)
322 COG3898 Uncharacterized membra 24.5 1.6E+02 0.0036 27.6 5.2 46 22-80 324-369 (531)
323 PLN02205 alpha,alpha-trehalose 24.4 2.5E+02 0.0054 28.6 7.0 22 12-33 489-510 (854)
324 KOG2280 Vacuolar assembly/sort 24.4 1.3E+02 0.0027 30.3 4.7 41 26-66 750-797 (829)
325 PF09731 Mitofilin: Mitochondr 24.3 98 0.0021 29.4 4.0 32 23-66 519-550 (582)
326 PRK10564 maltose regulon perip 24.2 1.2E+02 0.0025 27.1 4.1 27 46-72 264-290 (303)
327 KOG2076 RNA polymerase III tra 24.2 2E+02 0.0043 29.4 6.0 34 40-73 140-173 (895)
328 smart00770 Zn_dep_PLPC Zinc de 24.2 1E+02 0.0023 26.4 3.7 58 14-71 87-146 (241)
329 PF10938 YfdX: YfdX protein; 24.1 1.5E+02 0.0033 23.4 4.5 33 39-71 2-34 (155)
330 PF07739 TipAS: TipAS antibiot 23.9 1.9E+02 0.004 20.8 4.7 52 99-158 51-102 (118)
331 COG4783 Putative Zn-dependent 23.7 2E+02 0.0042 27.4 5.6 42 22-75 335-376 (484)
332 KOG2076 RNA polymerase III tra 23.6 3.4E+02 0.0074 27.8 7.6 38 35-72 203-240 (895)
333 KOG4162 Predicted calmodulin-b 23.2 1.3E+02 0.0028 30.2 4.5 27 46-72 761-787 (799)
334 KOG2796 Uncharacterized conser 23.2 2.7E+02 0.0059 24.9 6.1 43 18-72 277-319 (366)
335 PF13763 DUF4167: Domain of un 23.2 1.8E+02 0.0038 20.8 4.1 27 40-66 40-66 (80)
336 KOG1585 Protein required for f 23.0 2.5E+02 0.0055 24.7 5.8 45 29-73 100-144 (308)
337 KOG1840 Kinesin light chain [C 23.0 2.9E+02 0.0063 26.4 6.8 28 44-71 372-399 (508)
338 PRK01773 hscB co-chaperone Hsc 23.0 2.7E+02 0.006 22.5 5.8 29 40-68 128-156 (173)
339 PRK10153 DNA-binding transcrip 23.0 2.9E+02 0.0063 26.2 6.8 42 38-79 338-382 (517)
340 KOG2396 HAT (Half-A-TPR) repea 22.4 2.3E+02 0.0049 27.3 5.8 63 39-102 139-202 (568)
341 KOG2376 Signal recognition par 22.3 3.7E+02 0.008 26.4 7.2 74 41-125 177-258 (652)
342 PF04910 Tcf25: Transcriptiona 22.1 1.7E+02 0.0036 26.4 4.9 46 22-68 24-69 (360)
343 KOG0495 HAT repeat protein [RN 22.0 4E+02 0.0086 26.9 7.5 107 46-159 591-713 (913)
344 KOG2758 Translation initiation 21.9 1.6E+02 0.0035 26.9 4.6 40 19-70 159-198 (432)
345 KOG1840 Kinesin light chain [C 21.5 1.8E+02 0.0038 27.8 5.0 44 28-71 272-315 (508)
346 KOG0551 Hsp90 co-chaperone CNS 21.4 85 0.0018 28.7 2.7 53 46-98 126-179 (390)
347 COG2250 Uncharacterized conser 21.0 3.2E+02 0.0069 20.9 5.6 30 39-68 13-42 (132)
348 KOG1155 Anaphase-promoting com 20.9 2.8E+02 0.006 26.6 6.0 26 46-71 439-464 (559)
349 PF06588 Muskelin_N: Muskelin 20.5 2.3E+02 0.005 23.7 4.9 51 18-68 144-194 (199)
350 PF03704 BTAD: Bacterial trans 20.2 2.3E+02 0.0051 21.0 4.7 67 39-117 78-145 (146)
351 KOG1129 TPR repeat-containing 20.2 1.5E+02 0.0032 27.4 3.9 37 36-72 426-462 (478)
352 PF10157 DUF2365: Uncharacteri 20.1 3.1E+02 0.0066 21.8 5.4 14 20-33 47-60 (149)
353 KOG1156 N-terminal acetyltrans 20.1 3.1E+02 0.0066 27.2 6.3 61 42-102 78-140 (700)
No 1
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.95 E-value=2e-27 Score=208.84 Aligned_cols=155 Identities=23% Similarity=0.257 Sum_probs=143.5
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccc
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGI 100 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv 100 (201)
.++|++++.|..| |++++..++|+.|+.+|++|..+++....++..+.....+......+|||+||||
T Consensus 335 ~~d~~dv~~l~dR------------AeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGV 402 (504)
T KOG0624|consen 335 DIDPDDVQVLCDR------------AEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGV 402 (504)
T ss_pred hcCchHHHHHHHH------------HHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhh
Confidence 4677777777777 9999999999999999999999999999999999988888788899999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCCCCCch----HHHHHHHHHHHHHHcCChhHHHHhhccCCCCccccccccCCCCCCc
Q 037661 101 RDHRAGVDVIKKRYEALVQLFKPDRCSSVG----ADTANKLINEAWEVLSDPKRREAYDLLMCFDKTVQIQAENQDPEMN 176 (201)
Q Consensus 101 ~~~~as~~eIkkaYrkla~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~~~~~~~~~~~~~ 176 (201)
.+ +|+..||.+|||+++.+||||...+.. |+++|..|..|-+||+||++|+.||.+.++-+...++++++++++.
T Consensus 403 kR-nAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPLD~Es~q~GGGg~~Hg 481 (504)
T KOG0624|consen 403 KR-NASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPLDPESQQGGGGGPFHG 481 (504)
T ss_pred cc-cccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCCCChhhccCCCCCCCCC
Confidence 99 999999999999999999999998766 8999999999999999999999999999998888888888899999
Q ss_pred ccccCCCCCCCC
Q 037661 177 VVKLENQDPEDN 188 (201)
Q Consensus 177 ~~~~~~~~~~~~ 188 (201)
++++-+|.|.-.
T Consensus 482 f~n~hgF~~F~~ 493 (504)
T KOG0624|consen 482 FWNEHGFNPFGG 493 (504)
T ss_pred CccccCCCCCCC
Confidence 999999988654
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.4e-25 Score=197.21 Aligned_cols=73 Identities=40% Similarity=0.622 Sum_probs=69.3
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCC-CchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKT 163 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~ 163 (201)
..+|||+||||++ +|+.+|||+|||+||++||||+|+ .+.|+++|++|++||+||+||+||+.||++++....
T Consensus 2 ~~~dyYeiLGV~k-~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 2 AKRDYYEILGVSK-DASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CccchhhhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 3579999999999 999999999999999999999999 667999999999999999999999999999988765
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.6e-23 Score=182.97 Aligned_cols=74 Identities=34% Similarity=0.492 Sum_probs=69.4
Q ss_pred hhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch-HHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661 89 AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG-ADTANKLINEAWEVLSDPKRREAYDLLMCFDKT 163 (201)
Q Consensus 89 ~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~-a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~ 163 (201)
...+|||+||||++ +|+..|||+||||||+++|||||++.. |.+.|+.|+.||+||+||++|+.||.+|..+-.
T Consensus 13 ~~~rDfYelLgV~k-~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~ 87 (336)
T KOG0713|consen 13 LAGRDFYELLGVPK-NASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK 87 (336)
T ss_pred hcCCCHHHHhCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence 45789999999999 999999999999999999999999877 999999999999999999999999999966544
No 4
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.4e-22 Score=176.51 Aligned_cols=133 Identities=24% Similarity=0.313 Sum_probs=121.9
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhcc
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLG 99 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLg 99 (201)
.-|||.++++|+.| |++++..++|++|+++++++.++..+ ..++++++.+...+..++.+|||+|||
T Consensus 314 l~iD~syikall~r------------a~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykilG 380 (486)
T KOG0550|consen 314 LKIDSSYIKALLRR------------ANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKILG 380 (486)
T ss_pred hhcCHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 35799999999999 99999999999999999999999988 568899998888878899999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--HHHHHHHHHHHHHHcCChhHHHHhhccCCCCccccc
Q 037661 100 IRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--ADTANKLINEAWEVLSDPKRREAYDLLMCFDKTVQI 166 (201)
Q Consensus 100 v~~~~as~~eIkkaYrkla~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~~~ 166 (201)
|.+ .++..+|+++||++++.||||++.... ++..|+.|.+||.+|+||.+|..||.+.+..+.+.+
T Consensus 381 i~~-~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle~~~~~ 448 (486)
T KOG0550|consen 381 ISR-NASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLEEVGSG 448 (486)
T ss_pred hhh-hcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchhhhcCC
Confidence 999 999999999999999999999998763 899999999999999999999999998876655544
No 5
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.5e-22 Score=175.24 Aligned_cols=88 Identities=28% Similarity=0.352 Sum_probs=78.5
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCccccccccC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTVQIQAEN 170 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~~~~~~~ 170 (201)
...||+||||++ +|+..|||+|||+|+++||||||+. +.++|++|..||+||+||++|..||++|..+.+..+.+++
T Consensus 3 ~~~~y~il~v~~-~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g 79 (337)
T KOG0712|consen 3 NTKLYDILGVSP-DASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGG 79 (337)
T ss_pred ccccceeeccCC-CcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCC
Confidence 457999999999 9999999999999999999999987 6899999999999999999999999999988877666666
Q ss_pred CCCCCcccccC
Q 037661 171 QDPEMNVVKLE 181 (201)
Q Consensus 171 ~~~~~~~~~~~ 181 (201)
.+.|.++|+++
T Consensus 80 ~~~f~~~F~~g 90 (337)
T KOG0712|consen 80 FGGFSQFFGFG 90 (337)
T ss_pred CccHHHhccCC
Confidence 66667777744
No 6
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1e-20 Score=169.97 Aligned_cols=69 Identities=38% Similarity=0.550 Sum_probs=64.7
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
.|||+||||++ +|+.++||+|||+||++||||+++. ..|+++|++|++||+||+||.+|+.||++|..+
T Consensus 3 ~dyY~vLgv~~-~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~ 72 (369)
T PRK14288 3 LSYYEILEVEK-HSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKG 72 (369)
T ss_pred CChHHHcCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccc
Confidence 69999999999 9999999999999999999999974 458999999999999999999999999998754
No 7
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.2e-20 Score=169.67 Aligned_cols=70 Identities=34% Similarity=0.488 Sum_probs=66.1
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
.+|||+||||++ +|+.++||+|||+||++||||+++.+.|+++|++|++||+||+||++|+.||+++..+
T Consensus 3 ~~dyY~~Lgv~~-~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~ 72 (372)
T PRK14296 3 KKDYYEVLGVSK-TASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAA 72 (372)
T ss_pred CCCHHHhcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchh
Confidence 369999999999 9999999999999999999999987779999999999999999999999999998653
No 8
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.3e-19 Score=162.88 Aligned_cols=70 Identities=36% Similarity=0.629 Sum_probs=66.0
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
..|||+||||++ +|+.++||+|||+|+++||||+++.+.++++|+.|++||++|+||.+|+.||+++..+
T Consensus 3 ~~d~y~~Lgv~~-~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~ 72 (371)
T PRK14287 3 KRDYYEVLGVDR-NASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTD 72 (371)
T ss_pred CCCHHHhcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcc
Confidence 369999999999 9999999999999999999999987778999999999999999999999999998754
No 9
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.2e-19 Score=163.41 Aligned_cols=70 Identities=34% Similarity=0.567 Sum_probs=66.1
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
.+|||+||||++ +|+.++||+|||+|+++||||+++...++++|++|++||+||+||.+|+.||+++..+
T Consensus 4 ~~d~y~iLgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (377)
T PRK14298 4 TRDYYEILGLSK-DASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAG 73 (377)
T ss_pred CCCHHHhhCCCC-CCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccc
Confidence 469999999999 9999999999999999999999987778999999999999999999999999998654
No 10
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=9.2e-20 Score=164.95 Aligned_cols=68 Identities=35% Similarity=0.552 Sum_probs=64.0
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV-GADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
.+|||+||||++ +|+.++||+|||+|+++||||+++.. .|+++|+.|++||+||+||+||+.||+++.
T Consensus 8 ~~Dyy~~Lgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSS-DASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 479999999999 99999999999999999999999743 589999999999999999999999999875
No 11
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2.5e-19 Score=156.23 Aligned_cols=70 Identities=41% Similarity=0.628 Sum_probs=66.0
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
..|||+||||++ +|+.++||+|||+|+++||||+++...++++|+.|++||++|+||.+|+.||+++...
T Consensus 3 ~~d~y~vLgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~ 72 (291)
T PRK14299 3 YKDYYAILGVPK-NASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA 72 (291)
T ss_pred CCCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence 369999999999 9999999999999999999999987778999999999999999999999999988753
No 12
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2.4e-19 Score=161.71 Aligned_cols=70 Identities=39% Similarity=0.600 Sum_probs=66.3
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
.+|||+||||++ +|+.++||+|||+|+++||||+++.+.++++|+.|++||+||+||.+|+.||+++..+
T Consensus 2 ~~d~Y~~Lgv~~-~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~ 71 (382)
T PRK14291 2 KKDYYEILGVSR-NATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA 71 (382)
T ss_pred CCCHHHhhCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence 369999999999 9999999999999999999999988778999999999999999999999999998754
No 13
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=1.8e-19 Score=162.06 Aligned_cols=70 Identities=33% Similarity=0.568 Sum_probs=65.1
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
..|||+||||++ +|+.++||+|||+|+++||||+++. ..|+++|++|++||+||+||.+|+.||+++..+
T Consensus 3 ~~d~y~~Lgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (372)
T PRK14286 3 ERSYYDILGVSK-SANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG 73 (372)
T ss_pred CCCHHHhcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence 369999999999 9999999999999999999999974 458999999999999999999999999998754
No 14
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2e-19 Score=162.18 Aligned_cols=70 Identities=37% Similarity=0.591 Sum_probs=66.4
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
.+|||+||||++ +|+.++||+|||+|+++||||+++...++++|+.|++||+||+||.+|+.||+++..+
T Consensus 3 ~~d~y~~Lgv~~-~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~ 72 (380)
T PRK14276 3 NTEYYDRLGVSK-DASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG 72 (380)
T ss_pred CCCHHHhhCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc
Confidence 369999999999 9999999999999999999999988779999999999999999999999999998754
No 15
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.78 E-value=1.9e-19 Score=164.11 Aligned_cols=67 Identities=33% Similarity=0.457 Sum_probs=62.7
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
.+|||+||||++ +|+..+||+|||+||++||||+++. .++|++|++||+||+||.+|+.||+++..+
T Consensus 27 ~~d~Y~vLGV~~-~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~ 93 (421)
T PTZ00037 27 NEKLYEVLNLSK-DCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEG 93 (421)
T ss_pred chhHHHHcCCCC-CCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchh
Confidence 469999999999 9999999999999999999999853 689999999999999999999999998754
No 16
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.3e-19 Score=161.58 Aligned_cols=70 Identities=37% Similarity=0.586 Sum_probs=66.2
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
.+|||+||||++ +|+.+|||+|||+|+++||||+++...++++|+.|++||++|+||.+|+.||+++..+
T Consensus 4 ~~d~y~~Lgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g 73 (378)
T PRK14283 4 KRDYYEVLGVDR-NADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAG 73 (378)
T ss_pred cCChHHhhCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccc
Confidence 579999999999 9999999999999999999999987779999999999999999999999999988654
No 17
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.9e-19 Score=159.50 Aligned_cols=69 Identities=32% Similarity=0.517 Sum_probs=64.5
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV-GADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
+|||+||||++ +|+.++||+|||+|+++||||+++.. .+.++|++|++||+||+||.+|..||+++..+
T Consensus 3 ~d~y~iLgv~~-~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~ 72 (365)
T PRK14285 3 RDYYEILGLSK-GASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA 72 (365)
T ss_pred CCHHHhcCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch
Confidence 69999999999 99999999999999999999998753 48899999999999999999999999998754
No 18
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.77 E-value=4.2e-19 Score=121.04 Aligned_cols=62 Identities=42% Similarity=0.656 Sum_probs=59.9
Q ss_pred CcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--HHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 93 SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--ADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 93 d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
|||+||||++ +++.++||++|+++++.+|||++.... +.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~-~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPP-DASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTT-TSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCC-CCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999 999999999999999999999998876 8899999999999999999999998
No 19
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4.6e-19 Score=159.24 Aligned_cols=70 Identities=40% Similarity=0.652 Sum_probs=64.9
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS--VGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
.+|||+||||++ +|+.++||+|||+|+++||||+++. ..|+++|++|++||+||+||.+|+.||+++..+
T Consensus 3 ~~d~y~~lgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~ 74 (369)
T PRK14282 3 KKDYYEILGVSR-NATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG 74 (369)
T ss_pred CCChHHhcCCCC-CCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence 469999999999 9999999999999999999999975 348899999999999999999999999998654
No 20
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.1e-19 Score=159.32 Aligned_cols=69 Identities=41% Similarity=0.608 Sum_probs=66.0
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
.|||+||||++ +|+.++||+|||+|+++||||+++...++++|++|++||+||+||.+|+.||+++..+
T Consensus 4 ~~~y~iLgv~~-~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 72 (376)
T PRK14280 4 RDYYEVLGVSK-SASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG 72 (376)
T ss_pred CChHHhhCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence 69999999999 9999999999999999999999988779999999999999999999999999998754
No 21
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4.7e-19 Score=159.67 Aligned_cols=68 Identities=34% Similarity=0.461 Sum_probs=65.0
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCC
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCF 160 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~ 160 (201)
+|||+||||++ +|+.++||+|||+|+++||||+++...++++|+.|++||+||+||.+|+.||+++..
T Consensus 3 ~d~y~iLgv~~-~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSR-NASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCC-CCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 69999999999 999999999999999999999998777899999999999999999999999998864
No 22
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=7.9e-19 Score=157.96 Aligned_cols=70 Identities=36% Similarity=0.545 Sum_probs=64.8
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
..|||+||||++ +|+.++||+|||+|+++||||+++. ..++++|+.|++||+||+||.+|+.||+++..+
T Consensus 3 ~~~~y~~Lgv~~-~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g 73 (373)
T PRK14301 3 QRDYYEVLGVSR-DASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAG 73 (373)
T ss_pred CCChHHhcCCCC-CCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccc
Confidence 369999999999 9999999999999999999999975 348899999999999999999999999998754
No 23
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1e-18 Score=156.79 Aligned_cols=70 Identities=39% Similarity=0.577 Sum_probs=65.3
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
.+|||+||||++ +|+..+||+|||+|+++||||+++. +.++++|+.|++||+||+||.+|+.||++|..+
T Consensus 3 ~~d~y~~lgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g 73 (366)
T PRK14294 3 KRDYYEILGVTR-DASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG 73 (366)
T ss_pred CCChHHHhCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence 469999999999 9999999999999999999999974 458899999999999999999999999998754
No 24
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.1e-18 Score=157.73 Aligned_cols=70 Identities=39% Similarity=0.610 Sum_probs=65.0
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
..|||+||||++ +|+.++||+|||+|+++||||+++. +.++++|++|++||+||+||.+|+.||+++..+
T Consensus 4 ~~d~y~~Lgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 74 (386)
T PRK14277 4 KKDYYEILGVDR-NATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAA 74 (386)
T ss_pred CCCHHHhcCCCC-CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccc
Confidence 469999999999 9999999999999999999999974 348899999999999999999999999988654
No 25
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.7e-18 Score=155.54 Aligned_cols=70 Identities=43% Similarity=0.638 Sum_probs=64.8
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
..|||+||||++ +|+.++||+|||+|+++||||+++. ..++++|++|++||++|+||.+|+.||+++..+
T Consensus 3 ~~d~y~iLgv~~-~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 73 (371)
T PRK10767 3 KRDYYEVLGVSR-NASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAA 73 (371)
T ss_pred CCChHHhcCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccc
Confidence 469999999999 9999999999999999999999874 348899999999999999999999999988654
No 26
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.3e-18 Score=156.75 Aligned_cols=70 Identities=39% Similarity=0.610 Sum_probs=65.1
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV-GADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
..|||+||||++ +|+.++||+|||+|+++||||+++.. .|+++|+.|++||+||+||.+|+.||+++..+
T Consensus 3 ~~d~y~~Lgv~~-~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~ 73 (380)
T PRK14297 3 SKDYYEVLGLEK-GASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD 73 (380)
T ss_pred CCChHHhhCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence 369999999999 99999999999999999999999753 48999999999999999999999999998754
No 27
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.8e-18 Score=156.40 Aligned_cols=68 Identities=38% Similarity=0.528 Sum_probs=63.4
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHcCChhHHHHhhc----cCCC
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV-GADTANKLINEAWEVLSDPKRREAYDL----LMCF 160 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsdp~kR~~YD~----~~~~ 160 (201)
.|||+||||++ +|+.++||+|||+|+++||||+++.. .++++|+.|++||+||+||.+|+.||+ ++..
T Consensus 9 ~d~y~~Lgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~ 81 (389)
T PRK14295 9 KDYYKVLGVPK-DATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNG 81 (389)
T ss_pred cCHHHhcCCCC-CCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccc
Confidence 69999999999 99999999999999999999998754 489999999999999999999999998 7654
No 28
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2e-18 Score=156.18 Aligned_cols=69 Identities=35% Similarity=0.555 Sum_probs=64.3
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
.|||+||||++ +|+.++||+|||+|+++||||+++. ..++++|+.|++||+||+||.+|+.||+++..+
T Consensus 1 ~d~y~iLgv~~-~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 70 (391)
T PRK14284 1 MDYYTILGVSK-TASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG 70 (391)
T ss_pred CCHHHhcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence 38999999999 9999999999999999999999985 348999999999999999999999999998753
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.7e-18 Score=155.58 Aligned_cols=69 Identities=36% Similarity=0.567 Sum_probs=64.5
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
.|||+||||++ +|+.++||+|||+|+++||||+++. ..++++|+.|++||++|+||.+|+.||+++..+
T Consensus 3 ~d~y~iLgv~~-~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~ 72 (397)
T PRK14281 3 RDYYEVLGVSR-SADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG 72 (397)
T ss_pred CChhhhcCCCC-CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence 59999999999 9999999999999999999999975 348899999999999999999999999998754
No 30
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.73 E-value=4.3e-18 Score=151.99 Aligned_cols=69 Identities=39% Similarity=0.615 Sum_probs=64.8
Q ss_pred CcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCc
Q 037661 93 SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDK 162 (201)
Q Consensus 93 d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~ 162 (201)
|||+||||++ +|+.++||+|||+|+++||||+++...++++|+.|++||++|+||.+|+.||+++..+.
T Consensus 1 d~y~~Lgv~~-~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 69 (354)
T TIGR02349 1 DYYEILGVSK-DASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF 69 (354)
T ss_pred ChHHhCCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence 7999999999 99999999999999999999999866689999999999999999999999999887543
No 31
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=4.3e-18 Score=153.12 Aligned_cols=69 Identities=32% Similarity=0.523 Sum_probs=65.2
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
.|||+||||++ +|+.++||+|||+|+++||||+++...++++|++|++||++|+||.+|+.||+++..+
T Consensus 3 ~~~y~iLgv~~-~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~ 71 (372)
T PRK14300 3 QDYYQILGVSK-TASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA 71 (372)
T ss_pred CChHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence 59999999999 9999999999999999999999987678999999999999999999999999988654
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.73 E-value=7.7e-18 Score=147.85 Aligned_cols=67 Identities=37% Similarity=0.673 Sum_probs=64.1
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
+|||+||||++ +++.++||+|||+|+++||||++....++++|+.|++||++|+||.+|+.||.++.
T Consensus 4 ~d~y~~Lgv~~-~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKP-TDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 69999999999 99999999999999999999998877799999999999999999999999999864
No 33
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.5e-18 Score=156.69 Aligned_cols=69 Identities=39% Similarity=0.576 Sum_probs=64.6
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--ADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
..++||+||||.+ +++..+||++||+|||+|||||++... +.++|+.|+.||+|||||..|+.||.+..
T Consensus 6 ~~~c~YE~L~v~~-~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 6 KKRCYYEVLGVER-DADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hhhHHHHHhcccc-cCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 4568999999999 999999999999999999999987665 89999999999999999999999998876
No 34
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.2e-18 Score=147.92 Aligned_cols=68 Identities=32% Similarity=0.524 Sum_probs=66.5
Q ss_pred CcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 93 SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 93 d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
|||+||||.+ +|+..|||+||++|++++|||.+....+.++|+.|.+||+||+|+++|..||..+..+
T Consensus 44 d~Y~vLgv~~-~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 44 DYYKVLGVSR-NATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred chhhhhCcCC-CCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999866
No 35
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.3e-18 Score=153.34 Aligned_cols=72 Identities=35% Similarity=0.502 Sum_probs=67.6
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch----HHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG----ADTANKLINEAWEVLSDPKRREAYDLLMCFDKT 163 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~ 163 (201)
+.|||.+|+|++ +||.+||++|||++++.+||||+.++. |++.|++|.+||+||+||++|+.||.+|.++-.
T Consensus 8 e~e~Ya~LNlpk-dAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPK-DATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCc-ccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 458999999999 999999999999999999999998776 999999999999999999999999999987744
No 36
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=7.2e-18 Score=151.52 Aligned_cols=69 Identities=36% Similarity=0.554 Sum_probs=65.6
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
.|||+||||++ +|+.++||+|||+|+++||||+++...++++|+.|++||+||+||.+|+.||+++..+
T Consensus 2 ~d~y~~Lgv~~-~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSR-TASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCC-CCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 48999999999 9999999999999999999999987779999999999999999999999999998754
No 37
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.6e-18 Score=144.38 Aligned_cols=72 Identities=35% Similarity=0.499 Sum_probs=66.4
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCCccc
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTV 164 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~ 164 (201)
.|+|+||||++ +++.++|||+||+|++++|||+++. +.+..+|++||+||++|+||.+|..||.+|..+-..
T Consensus 31 ~~LYdVLgl~k-~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l 103 (279)
T KOG0716|consen 31 LDLYDVLGLPK-TATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL 103 (279)
T ss_pred hHHHHHhCCCc-ccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence 48999999999 9999999999999999999999988 558999999999999999999999999998655443
No 38
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=9.8e-18 Score=150.88 Aligned_cols=69 Identities=36% Similarity=0.587 Sum_probs=65.6
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
.|||+||||++ +|+..+||+|||+|+++||||+++...++++|+.|++||+||+||.+|+.||.++..+
T Consensus 3 ~d~y~vLgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g 71 (374)
T PRK14293 3 ADYYEILGVSR-DADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAG 71 (374)
T ss_pred CChhhhcCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccc
Confidence 59999999999 9999999999999999999999987779999999999999999999999999988653
No 39
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=1.1e-17 Score=150.15 Aligned_cols=69 Identities=38% Similarity=0.601 Sum_probs=64.6
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV--GADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
.|||+||||++ +|+..+||+|||+|+++||||+++.. .|+++|+.|++||++|+||.+|+.||+++..+
T Consensus 3 ~d~y~vLgv~~-~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~ 73 (365)
T PRK14290 3 KDYYKILGVDR-NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVD 73 (365)
T ss_pred CChhhhcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcc
Confidence 59999999999 99999999999999999999999754 48899999999999999999999999998754
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.71 E-value=4.3e-18 Score=164.93 Aligned_cols=73 Identities=25% Similarity=0.365 Sum_probs=67.9
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKT 163 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~ 163 (201)
...+||+||||++ +|+..+||+|||+||++||||+++...|.++|+.|++||+||+||.+|+.||.+|..+..
T Consensus 571 ~d~dYYdILGVs~-dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 571 PDTLFYDILGVGV-NADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCCChHHHcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 4569999999999 999999999999999999999998777899999999999999999999999999976533
No 41
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.4e-17 Score=150.32 Aligned_cols=70 Identities=37% Similarity=0.572 Sum_probs=65.1
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV-GADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
..|||+||||++ +|+.+|||+|||+|+++||||+++.. .++++|+.|++||++|+||.+|+.||+++..+
T Consensus 4 ~~~~y~~Lgv~~-~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~ 74 (386)
T PRK14289 4 KRDYYEVLGVSK-TATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG 74 (386)
T ss_pred cCCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence 469999999999 99999999999999999999999754 48999999999999999999999999988653
No 42
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5.4e-18 Score=147.72 Aligned_cols=74 Identities=34% Similarity=0.466 Sum_probs=69.2
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch-HHHHHHHHHHHHHHcCChhHHHHhhccCCCCcccc
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG-ADTANKLINEAWEVLSDPKRREAYDLLMCFDKTVQ 165 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~-a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~~ 165 (201)
..|||.||||.. +++..+|+++||+.+++||||||++.. |.+.|+.|.+||+||+|+.+|..||..+..+...+
T Consensus 4 ~~dyY~lLgi~~-~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~ 78 (296)
T KOG0691|consen 4 DTDYYDLLGISE-DATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ 78 (296)
T ss_pred cchHHHHhCCCC-CCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence 569999999999 999999999999999999999998876 99999999999999999999999999998766554
No 43
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.68 E-value=8.3e-17 Score=107.98 Aligned_cols=57 Identities=42% Similarity=0.681 Sum_probs=53.4
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCC--CchHHHHHHHHHHHHHHcCChh
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS--SVGADTANKLINEAWEVLSDPK 149 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~--~~~a~~~f~~i~~Ay~vLsdp~ 149 (201)
+|||+||||++ +++.++||++|+++++.+|||++. ...+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~-~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPR-DASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999 999999999999999999999998 4558999999999999999985
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.66 E-value=2e-16 Score=104.21 Aligned_cols=54 Identities=41% Similarity=0.621 Sum_probs=51.4
Q ss_pred CcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCC
Q 037661 93 SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSD 147 (201)
Q Consensus 93 d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd 147 (201)
|||+||||++ +++.++||++|++|++.+|||++.. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~-~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPP-DASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999 9999999999999999999999987 5689999999999999986
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.8e-16 Score=132.72 Aligned_cols=72 Identities=31% Similarity=0.475 Sum_probs=65.3
Q ss_pred hhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch---HHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 89 AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG---ADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 89 ~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~---a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
..++|.|+||||.+ +|+..+|++||++|+++||||+++... +.+.|+.|+.||.||+|.++|+.||..|...
T Consensus 11 f~~~d~YevLGVer-~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 11 FNKKDLYEVLGVER-DATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccccCHHHHhhhcc-cCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 34569999999999 999999999999999999999995322 8999999999999999999999999988655
No 46
>PHA03102 Small T antigen; Reviewed
Probab=99.61 E-value=6.6e-16 Score=123.08 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=62.6
Q ss_pred cCcchhccccCCCC--CHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCccc
Q 037661 92 KSWYAVLGIRDHRA--GVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTV 164 (201)
Q Consensus 92 ~d~Y~vLgv~~~~a--s~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~ 164 (201)
..+|+||||++ +| +..+||+|||++++++|||+++. .++|+.|++||++|+|+.+|..||.++......
T Consensus 5 ~~l~~vLGl~~-~A~~s~~eIKkAYr~la~~~HPDkgg~---~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~ 75 (153)
T PHA03102 5 KELMDLLGLPR-SAWGNLPLMRKAYLRKCLEFHPDKGGD---EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSE 75 (153)
T ss_pred HHHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCch---hHHHHHHHHHHHHHhhHHHhccccccCCccccc
Confidence 35799999999 99 99999999999999999999643 689999999999999999999999999766443
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.61 E-value=1.3e-15 Score=145.16 Aligned_cols=70 Identities=37% Similarity=0.521 Sum_probs=65.7
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCc
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDK 162 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~ 162 (201)
+|||+||||++ +|+..+||++||+|+++||||++....+.++|+.|++||++|+||.+|+.||.++..+.
T Consensus 2 ~DYYeVLGVs~-dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~ 71 (871)
T TIGR03835 2 RDYYEVLGIDR-DADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGV 71 (871)
T ss_pred CChhHhcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 59999999999 99999999999999999999999887788999999999999999999999999886543
No 48
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2e-15 Score=122.44 Aligned_cols=67 Identities=40% Similarity=0.676 Sum_probs=63.2
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--HHHHHHHHHHHHHHcCChhHHHHhhcc
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--ADTANKLINEAWEVLSDPKRREAYDLL 157 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~kR~~YD~~ 157 (201)
...+||+||||++ +++..+|+++||++++++|||+++... +.+.|+.|++||++|+|+.+|..||..
T Consensus 4 ~~~~~y~iLgv~~-~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPP-NASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 3469999999999 999999999999999999999998775 789999999999999999999999986
No 49
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.8e-15 Score=123.60 Aligned_cols=72 Identities=29% Similarity=0.406 Sum_probs=66.3
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFDKT 163 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~ 163 (201)
.-|+|+||||++ +++..|||+|||+|++++||||++. .+.++.|..|++||..|+|+..|..|..+|+.+..
T Consensus 98 ~fDPyEILGl~p-gas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGp 170 (230)
T KOG0721|consen 98 KFDPYEILGLDP-GASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGP 170 (230)
T ss_pred cCCcHHhhCCCC-CCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCc
Confidence 449999999999 9999999999999999999999987 44788899999999999999999999999987654
No 50
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.55 E-value=9.9e-15 Score=118.53 Aligned_cols=67 Identities=25% Similarity=0.556 Sum_probs=59.2
Q ss_pred cCcchhccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 92 KSWYAVLGIRDHR--AGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 92 ~d~Y~vLgv~~~~--as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
.|||+||||++ . ++..+|+++||++++++|||++.... +.+.|..||+||++|+||.+|+.|+....
T Consensus 1 ~~yf~llgl~~-~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPA-RYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCC-CCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 38999999998 6 67899999999999999999986543 56789999999999999999999986544
No 51
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.53 E-value=2e-14 Score=116.28 Aligned_cols=67 Identities=22% Similarity=0.504 Sum_probs=58.8
Q ss_pred cCcchhccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCch----HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 92 KSWYAVLGIRDHR--AGVDVIKKRYEALVQLFKPDRCSSVG----ADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 92 ~d~Y~vLgv~~~~--as~~eIkkaYrkla~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
.|||+||||++ . ++..+|+++||+|++++|||++.... +...+..||+||+||+||.+|+.|+....
T Consensus 2 ~~yf~llgl~~-~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQ-EYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 48999999998 6 78999999999999999999987543 33457899999999999999999987664
No 52
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.50 E-value=5.6e-14 Score=114.29 Aligned_cols=69 Identities=26% Similarity=0.466 Sum_probs=61.2
Q ss_pred hccCcchhccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 90 EKKSWYAVLGIRDHR--AGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~--as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
+..|||++|||++ . .+..+|+++||+|++++|||++.... +.+.|..||+||.||+||.+|+.|+....
T Consensus 2 ~~~~~F~l~~l~~-~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 2 GTPCHFALFDLQP-SFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCChhhhcCcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 3579999999998 6 66899999999999999999986644 56789999999999999999999997654
No 53
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.7e-14 Score=129.28 Aligned_cols=71 Identities=28% Similarity=0.398 Sum_probs=67.1
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
+.+|+|.||||+. +++.++|||.||++|..+|||||..+.|++.|+.|..||++|+|+++|..||......
T Consensus 233 ~~~daYsvlGl~~-d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke 303 (490)
T KOG0720|consen 233 NILDAYSALGLPS-DCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE 303 (490)
T ss_pred cCCCchhhcCCCC-CCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 3679999999999 9999999999999999999999999999999999999999999999999999877544
No 54
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.49 E-value=6.5e-14 Score=114.24 Aligned_cols=68 Identities=26% Similarity=0.462 Sum_probs=58.7
Q ss_pred ccCcchhccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 91 KKSWYAVLGIRDHR--AGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~--as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
..|||+||||++ . ++..+|+++||+|++++|||++.... +.+.+..||+||.+|+||.+|+.|.....
T Consensus 5 ~~dyf~llglp~-~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 5 KDDHFSLFGLPA-RFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 369999999998 5 67899999999999999999987544 34456899999999999999999996444
No 55
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.6e-13 Score=115.08 Aligned_cols=71 Identities=41% Similarity=0.551 Sum_probs=64.7
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHHHcCChhHHHHhhccCCCCc
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV--GADTANKLINEAWEVLSDPKRREAYDLLMCFDK 162 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~ 162 (201)
..|||+||||.+ .++..+|++||++++++||||+++.. .++.+|++|.+||++|+||.+|..||+++....
T Consensus 2 ~~d~~~~l~i~~-~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~ 74 (306)
T KOG0714|consen 2 GKDYYKILGIAR-SASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGL 74 (306)
T ss_pred cccHHHHhCccc-cccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcccc
Confidence 358999999999 99999999999999999999998877 466689999999999999999999999998333
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.4e-13 Score=115.46 Aligned_cols=71 Identities=28% Similarity=0.417 Sum_probs=66.1
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
...|.|+||||.+ .++..+|.++||+|++++|||+++++.+.+.|+.|..||++|.|.+.|..||-..+..
T Consensus 31 G~enCYdVLgV~R-ea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhp 101 (329)
T KOG0722|consen 31 GAENCYDVLGVAR-EANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHP 101 (329)
T ss_pred cchhHHHHhhhhh-hccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCc
Confidence 4569999999999 9999999999999999999999999998999999999999999999999999766543
No 57
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.30 E-value=3.7e-12 Score=97.08 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=47.0
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcC
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLS 146 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLs 146 (201)
.++|+||||++ +++.++|+++||+|++++|||+.. ..+.|++|++||++|.
T Consensus 65 ~eAy~ILGv~~-~As~~eIkkaYRrLa~~~HPDkgG---s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISP-TASKERIREAHKQLMLRNHPDNGG---STYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCC-CCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHHh
Confidence 48999999999 999999999999999999999853 3689999999999985
No 58
>PHA02624 large T antigen; Provisional
Probab=99.28 E-value=1.1e-11 Score=116.99 Aligned_cols=60 Identities=18% Similarity=0.336 Sum_probs=56.4
Q ss_pred ccCcchhccccCCCC--CHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHh
Q 037661 91 KKSWYAVLGIRDHRA--GVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAY 154 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~a--s~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~Y 154 (201)
..++|+||||++ +| +..+||+|||++++++|||++. +.+.|+.|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~-~A~gs~~eIKkAYRkLAkkyHPDKgG---deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPM-AAWGNLPLMRKAYLRKCKEYHPDKGG---DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCC---cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 458999999999 99 9999999999999999999964 378999999999999999999999
No 59
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.25 E-value=1.6e-11 Score=99.95 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=59.9
Q ss_pred cCcchhccccCC-CCCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 92 KSWYAVLGIRDH-RAGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 92 ~d~Y~vLgv~~~-~as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
.|||++|||++. ..+...++++|++|.+.+|||+....+ +.+....||+||.+|+||.+|+.|=....
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 589999999981 388999999999999999999987665 56678999999999999999999986554
No 60
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.25 E-value=6.8e-12 Score=108.49 Aligned_cols=55 Identities=25% Similarity=0.429 Sum_probs=50.1
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc--------hHHHHHHHHHHHHHHcCC
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV--------GADTANKLINEAWEVLSD 147 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~--------~a~~~f~~i~~Ay~vLsd 147 (201)
.++|+||||++ +++.++||++||+|+++||||+..+. .++++|+.|++||++|+.
T Consensus 200 ~~ay~vLgv~~-~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSE-SDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCC-CCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999 99999999999999999999997542 278999999999999974
No 61
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.1e-11 Score=106.24 Aligned_cols=107 Identities=31% Similarity=0.325 Sum_probs=80.2
Q ss_pred hhhccCcchhccccCC--CCCHHHHHHHHHHHHHhhCCCCCCCch---HHHHHHHHHHHHHHcCChhHHHHhhccCCCCc
Q 037661 88 AAEKKSWYAVLGIRDH--RAGVDVIKKRYEALVQLFKPDRCSSVG---ADTANKLINEAWEVLSDPKRREAYDLLMCFDK 162 (201)
Q Consensus 88 ~~~~~d~Y~vLgv~~~--~as~~eIkkaYrkla~~~HPDk~~~~~---a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~ 162 (201)
.++..|+|.+|||+.+ .+++.+|.++.++.+.+||||+....+ ..+.|+.|..||+||+|+.+|..||.......
T Consensus 39 ~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~ad 118 (379)
T COG5269 39 NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDAD 118 (379)
T ss_pred hhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccC
Confidence 5677899999999943 688999999999999999999984433 78999999999999999999999998776555
Q ss_pred cccccccCCCCCCcccccCCCCCCCCCC---CCCCCCCCC
Q 037661 163 TVQIQAENQDPEMNVVKLENQDPEDNND---DKPKPKPSL 199 (201)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ps~ 199 (201)
..++.......|.+.|. |-+... ..-||-|||
T Consensus 119 vppp~~~t~~~Ffe~w~-----pvFe~earFSkKqPvPsL 153 (379)
T COG5269 119 VPPPRIYTPDEFFEVWE-----PVFEREARFSKKQPVPSL 153 (379)
T ss_pred CCCccCCCchhHHHHHH-----HHHHhhhhccccCCCCCC
Confidence 55444444444444433 221111 245677776
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.12 E-value=7.9e-11 Score=106.94 Aligned_cols=73 Identities=33% Similarity=0.426 Sum_probs=66.6
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCCCCccc
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMCFDKTV 164 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~ 164 (201)
.=|+|+||||.. +++..+||++||+|+.++||||.+.-. -++.++.|++||..|+|...|+.|-.+|+++.++
T Consensus 97 ~fDPyEILGI~~-~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQ 175 (610)
T COG5407 97 GFDPYEILGIDQ-DTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQ 175 (610)
T ss_pred CCChHHhhcccC-CCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCc
Confidence 349999999999 999999999999999999999987722 7889999999999999999999999999877654
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.07 E-value=3e-10 Score=91.09 Aligned_cols=56 Identities=27% Similarity=0.476 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 104 RAGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 104 ~as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
..+..+|+++||+|++++|||++...+ +...|..||+||++|+||.+|+.|.....
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 457889999999999999999975543 67889999999999999999999998765
No 64
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=6.7e-10 Score=91.65 Aligned_cols=64 Identities=28% Similarity=0.385 Sum_probs=58.8
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--HHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--ADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
+-|+|+||.|.+ ..+.++||+.||+|++.+|||||+... |..+|-.|.+||..|-|+..|..-+
T Consensus 52 nLNpfeVLqIdp-ev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 52 NLNPFEVLQIDP-EVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccChHHHHhcCC-CCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 459999999999 999999999999999999999999875 9999999999999999999665544
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=9.5e-07 Score=74.80 Aligned_cols=60 Identities=22% Similarity=0.381 Sum_probs=53.4
Q ss_pred hhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHH-HcCChh
Q 037661 89 AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWE-VLSDPK 149 (201)
Q Consensus 89 ~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~-vLsdp~ 149 (201)
..-..||.||||.. +|+..+|+.+|.+|++.+|||-.......+.|.+|.+||. ||....
T Consensus 44 e~~~e~fril~v~e-~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~ 104 (342)
T KOG0568|consen 44 EKIMECFRILGVEE-GADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKF 104 (342)
T ss_pred HHHHHHHHHhcccc-cCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 34458999999999 9999999999999999999999988878899999999999 776443
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2e-06 Score=85.25 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=45.5
Q ss_pred CcchhccccCC---CCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcC
Q 037661 93 SWYAVLGIRDH---RAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLS 146 (201)
Q Consensus 93 d~Y~vLgv~~~---~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLs 146 (201)
+-|+||.|+-. ...++.||++|++|+.+||||||+.. .+.|..|++||+.|.
T Consensus 1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEG--RemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEG--REMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchH--HHHHHHHHHHHHHHH
Confidence 78999999841 34458899999999999999999765 799999999999998
No 67
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=98.27 E-value=3.9e-06 Score=77.72 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=76.7
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCchhHHhhHHHHHHHHHhhhccCcchhcccc
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRAR-MKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIR 101 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~-~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~ 101 (201)
-+..+.....+.+.++ ..-.++|+..- .........-.+.. ........|+.||..|+.. .+.... |+=++|.
T Consensus 324 ~~~~~~~~~~~~~~d~-k~~~~~ae~~~--e~~r~~e~~d~~I~~W~~GKE~NIRALLSTLh~V--LW~es~-WqpVslt 397 (453)
T KOG0431|consen 324 FSDLLNPQGFKSTSDE-KRPREIAEMRK--ELSRLMEPLDEEIRRWSEGKEGNIRALLSTLHYV--LWPESG-WQPVSLT 397 (453)
T ss_pred hhhhhccccccchhhh-hhHHHHHHHHH--HHHhhcchHHHHHHHhcccccccHHHHHHHHhHh--hcCccC-cccCchh
Confidence 3444444445555555 55556665521 00011111112222 3344557799999999977 344444 5666898
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCCch--------HHHHHHHHHHHHHHcC
Q 037661 102 DHRAGVDVIKKRYEALVQLFKPDRCSSVG--------ADTANKLINEAWEVLS 146 (201)
Q Consensus 102 ~~~as~~eIkkaYrkla~~~HPDk~~~~~--------a~~~f~~i~~Ay~vLs 146 (201)
. -.+..+||++|||.+|.+||||.+..+ +++.|-.+++||....
T Consensus 398 D-LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 398 D-LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred h-ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 8 999999999999999999999998885 7788888888887543
No 68
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.4e-05 Score=59.82 Aligned_cols=49 Identities=29% Similarity=0.333 Sum_probs=43.4
Q ss_pred hhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCCh
Q 037661 96 AVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDP 148 (201)
Q Consensus 96 ~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp 148 (201)
.||||.+ +++.+.||.++|++.+..|||+...+ -.-..||||+++|...
T Consensus 60 lIL~v~~-s~~k~KikeaHrriM~~NHPD~GGSP---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTP-SLDKDKIKEAHRRIMLANHPDRGGSP---YLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCc-cccHHHHHHHHHHHHHcCCCcCCCCH---HHHHHHHHHHHHHhcc
Confidence 4899999 99999999999999999999999886 4445799999999753
No 69
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=4.7e-05 Score=60.76 Aligned_cols=71 Identities=23% Similarity=0.423 Sum_probs=56.4
Q ss_pred hhccCcchhccccCC-CCCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 89 AEKKSWYAVLGIRDH-RAGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 89 ~~~~d~Y~vLgv~~~-~as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
....+||.++|.... ...++.+..-|.-...++|||+...+. |.+....|++||.+|.||-+|+.|=....
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 345689999987631 455666776899999999999954433 88899999999999999999999975543
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0022 Score=52.11 Aligned_cols=53 Identities=32% Similarity=0.467 Sum_probs=47.4
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--------HHHHHHHHHHHHHHc
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--------ADTANKLINEAWEVL 145 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~--------a~~~f~~i~~Ay~vL 145 (201)
.+.|.+||+.. .....+|+++|+++....|||+....+ +.+.++.|++||+-+
T Consensus 113 ~~~l~~l~~~~-~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEI-KADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCch-hhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999 999999999999999999999976655 888889999998754
No 71
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0031 Score=57.32 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=49.1
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH 85 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~ 85 (201)
+.++|+|++||++| +++++..|+|+.|+.++++|+.+.|....++.-+..|...
T Consensus 284 Le~~~~N~KALyRr------------G~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 284 LELDPNNVKALYRR------------GQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HhcCCCchhHHHHH------------HHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45799999999999 9999999999999999999999999998888777776654
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0017 Score=52.79 Aligned_cols=67 Identities=25% Similarity=0.482 Sum_probs=52.2
Q ss_pred CcchhccccCC-CCCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 93 SWYAVLGIRDH-RAGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 93 d~Y~vLgv~~~-~as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
||+..+|..+. ....+.++..|+.+.+.+|||+....+ +.+.+..++.||.+|.||.+|..|=.-..
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 45555666540 223556889999999999999987766 55678999999999999999999975544
No 73
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.23 E-value=0.017 Score=33.15 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
|+-+..+|..++..|++++|+..++++.+++|+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3455667999999999999999999999999963
No 74
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.96 E-value=0.022 Score=35.31 Aligned_cols=39 Identities=18% Similarity=0.104 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
+...|..+...|++++|++.++++.+.+|....+...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 456699999999999999999999999999976655443
No 75
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.92 E-value=0.14 Score=47.63 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=41.2
Q ss_pred cCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 17 SSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 17 ~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
......+|++..++... +..++..|+|++|+..+++|..++|+...
T Consensus 65 ~~~~~~dP~~a~a~~NL------------G~AL~~lGryeEAIa~f~rALeL~Pd~ae 110 (453)
T PLN03098 65 KDGSEADVKTAEDAVNL------------GLSLFSKGRVKDALAQFETALELNPNPDE 110 (453)
T ss_pred CCCccCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCchH
Confidence 34445899999999999 99999999999999999999999999864
No 76
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.89 E-value=0.029 Score=32.41 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
+-+..+|..++..|+++.|+..+.+|.+++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 44566799999999999999999999999996
No 77
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.74 E-value=0.027 Score=37.88 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=36.8
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
.++|+++..+..+ |..++..|++.+|+..+.++..+.|+...+..+.
T Consensus 23 ~~~p~~~~~~~~~------------a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 23 ELDPDDPELWLQR------------ARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HhCcccchhhHHH------------HHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 3566667777666 9999999999999999999999999876554443
No 78
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.40 E-value=0.025 Score=37.69 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=27.7
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCC
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEE-KIDSALCVVDRARMKNP 70 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~-d~~~A~~~~~~a~~~~p 70 (201)
+||++..++..+ |..++..| ++.+|+.+++++..++|
T Consensus 32 ~~p~~~~~~~~~------------g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 32 LDPNNAEAYYNL------------GLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HSTTHHHHHHHH------------HHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred cCCCCHHHHHHH------------HHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 466666666666 88888887 68888888888887776
No 79
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.36 E-value=0.031 Score=37.00 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=23.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
|..+++.|++++|...+.++...+|....+..++.
T Consensus 32 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 32 AQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 77777777777777777777777777655554443
No 80
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.32 E-value=0.056 Score=35.62 Aligned_cols=39 Identities=26% Similarity=0.481 Sum_probs=31.1
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
.+|++.+++... |..++..|++++|+..++++..++|..
T Consensus 26 ~~P~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 26 QDPDNPEAWYLL------------GRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp CSTTHHHHHHHH------------HHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 457777777777 999999999999999999999988875
No 81
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.76 E-value=0.07 Score=35.45 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY 82 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 82 (201)
|+.+...|..++..|+|+.|+..+.++..++|....+-..+..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~ 46 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLA 46 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 56677779999999999999999999999999987655444443
No 82
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.46 E-value=0.062 Score=45.45 Aligned_cols=69 Identities=16% Similarity=0.063 Sum_probs=48.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHH----HhhhccCcchhccccCCCCCHHHHHHHHHHHHH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHK----LAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQ 119 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~----~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~ 119 (201)
|.+.++.+.|+.|+..+.+|..++|+...+ +.+....+- ....-.||-+||.+.| +..+.+++-++|-.
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kA--l~RRAeayek~ek~eealeDyKki~E~dP---s~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKA--LERRAEAYEKMEKYEEALEDYKKILESDP---SRREAREAIARLPP 213 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHH--HHHHHHHHHhhhhHHHHHHHHHHHHHhCc---chHHHHHHHHhcCH
Confidence 888999999999999999999999987533 223222221 1122348999999988 56666666665443
No 83
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=94.39 E-value=0.097 Score=40.66 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=38.7
Q ss_pred chhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHH
Q 037661 95 YAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRR 151 (201)
Q Consensus 95 Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR 151 (201)
..||||++ ..+.++|.+.|.+|-...+|++... .-.-..|..|.+.|....+.
T Consensus 61 ~~ILnv~~-~~~~eeI~k~y~~Lf~~Nd~~kGGS---fYLQSKV~rAKErl~~El~~ 113 (127)
T PF03656_consen 61 RQILNVKE-ELSREEIQKRYKHLFKANDPSKGGS---FYLQSKVFRAKERLEQELKE 113 (127)
T ss_dssp HHHHT--G---SHHHHHHHHHHHHHHT-CCCTS----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCC-ccCHHHHHHHHHHHHhccCCCcCCC---HHHHHHHHHHHHHHHHHHHH
Confidence 68999999 9999999999999999999998755 56666788888888755433
No 84
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.91 E-value=0.14 Score=28.76 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
....+|..++..|++++|+..++++...+|.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3456799999999999999999999999996
No 85
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=93.69 E-value=1.3 Score=32.84 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=42.8
Q ss_pred ccCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661 16 LSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC 81 (201)
Q Consensus 16 ~~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~ 81 (201)
+.....++|++..++... |..++..|++++|+..+.++..++|....+...+..
T Consensus 6 ~~~~l~~~p~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 59 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYAL------------AYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAA 59 (135)
T ss_pred HHHHHcCChhhHHHHHHH------------HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 444556778888777777 999999999999999999999999987655544443
No 86
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.31 E-value=0.2 Score=28.56 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
.-+..++..+...|+++.|+..+.++.++.|.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44667799999999999999999999999883
No 87
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.27 E-value=0.71 Score=30.32 Aligned_cols=44 Identities=14% Similarity=-0.017 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH 85 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~ 85 (201)
+--+|..+++.|+|..|++++..+.++.|....+..+...++-.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 34568999999999999999999999999998887777766544
No 88
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.75 E-value=0.23 Score=43.89 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=31.7
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+.++|++.--+..| |.+|.+.|.++.|+.++++|..++|..-
T Consensus 108 I~l~P~nAVyycNR------------AAAy~~Lg~~~~AVkDce~Al~iDp~ys 149 (304)
T KOG0553|consen 108 IELDPTNAVYYCNR------------AAAYSKLGEYEDAVKDCESALSIDPHYS 149 (304)
T ss_pred HhcCCCcchHHHHH------------HHHHHHhcchHHHHHHHHHHHhcChHHH
Confidence 45677777777777 7777888888888888888888877653
No 89
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.39 E-value=1.5 Score=33.49 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=38.6
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 29 ALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 29 ~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
....++...-...+...++.++..|+++.|++.+.++..++|..+.+...+-
T Consensus 52 ~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm 103 (146)
T PF03704_consen 52 PERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLM 103 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3444444555567777888899999999999999999999999976654443
No 90
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.34 E-value=0.36 Score=43.29 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=33.1
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
.++|++..++..+ |..++..|+++.|+.++.+|..++|....+...+.
T Consensus 30 ~~~P~~~~a~~~~------------a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg 77 (356)
T PLN03088 30 DLDPNNAELYADR------------AQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77 (356)
T ss_pred HhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 4577777777777 77777777777777777777777776654443333
No 91
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.16 E-value=1.8 Score=31.31 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
+.....+..|..++..|++++|+..+..+.+.++..
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 333444455999999999999999999999988876
No 92
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.89 E-value=0.44 Score=28.17 Aligned_cols=28 Identities=7% Similarity=0.050 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
+..+|..+...|+|++|+.+++++..+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4568999999999999999999966543
No 93
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=91.84 E-value=1.3 Score=39.63 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
.++..|..++..|+|+.|+..|.+|.+++|....+...+.
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a 43 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRA 43 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4666799999999999999999999999998865544433
No 94
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=91.53 E-value=0.69 Score=35.83 Aligned_cols=49 Identities=14% Similarity=0.086 Sum_probs=40.3
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
..++|.+..++... |..+.+.|++++|+..|.++..++|........+.
T Consensus 51 l~~~P~~~~a~~~l------------g~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 51 VMAQPWSWRAHIAL------------AGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred HHcCCCcHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 35789999999888 99999999999999999999999998755443333
No 95
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=91.37 E-value=0.41 Score=31.33 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV 83 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 83 (201)
..|..++..|++++|+..++++...+|....+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~ 41 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRIL 41 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4589999999999999999999999999876655555444
No 96
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=91.15 E-value=5.3 Score=32.14 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=15.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
|-.++..|++++|.++++-+..++|..
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp~~ 68 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDAWS 68 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 555555555555555555555555544
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=90.88 E-value=0.32 Score=44.21 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=58.5
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH--HHhhhccCcchhc
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH--KLAAEKKSWYAVL 98 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~--~~~~~~~d~Y~vL 98 (201)
..||++..++++| |..+|.+|.-..|+.++.++.++-|..-+++.....+... .+.....||-.||
T Consensus 66 e~dp~~Y~aifrR------------aT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl 133 (504)
T KOG0624|consen 66 EGDPNNYQAIFRR------------ATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVL 133 (504)
T ss_pred cCCchhHHHHHHH------------HHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHH
Confidence 4689999999999 9999999999999999999999999875444322221111 1122344888888
Q ss_pred cccCCCCCHHHHHHHHHHHHH
Q 037661 99 GIRDHRAGVDVIKKRYEALVQ 119 (201)
Q Consensus 99 gv~~~~as~~eIkkaYrkla~ 119 (201)
.-.+ +......++-+|++
T Consensus 134 ~~~~---s~~~~~eaqskl~~ 151 (504)
T KOG0624|consen 134 QHEP---SNGLVLEAQSKLAL 151 (504)
T ss_pred hcCC---CcchhHHHHHHHHh
Confidence 7655 66666666666554
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=90.78 E-value=0.65 Score=36.01 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=29.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
+..++..|++++|+..+.++..+.|........+.
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 65 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALA 65 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 88899999999999999999999998855543333
No 99
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.58 E-value=0.69 Score=40.32 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=43.2
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH-HhhHHHHH
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL-NSHFACYV 83 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~-~~~l~~~~ 83 (201)
...+|.|++||++| |.++....+.++|.+++.++.+++|....+ ++-++.++
T Consensus 257 L~~~~~nvKA~frR------------akAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le 309 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRR------------AKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLE 309 (329)
T ss_pred HhcCCchHHHHHHH------------HHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 45689999999999 999999999999999999999999988543 34444443
No 100
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.57 E-value=1.8 Score=34.26 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
.++++..++..++++.|+.-+.+-.+++|+.+.+
T Consensus 50 qL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 50 QLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3556777777777777777777777777777544
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=90.56 E-value=0.74 Score=37.80 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=13.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
|..++..|++++|+..++++..+.|..
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 444455555555555555555544443
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=90.56 E-value=1.1 Score=33.28 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=36.8
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY 82 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 82 (201)
++|++..++... |..++..|+++.|+..+.++..++|........+..+
T Consensus 46 ~~p~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 46 YDPYNSRYWLGL------------AACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred hCCCcHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 567777777777 8888888888888888888888888775555444443
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=2.5 Score=40.12 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=64.4
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH----HHhhhccCcch
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH----KLAAEKKSWYA 96 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~----~~~~~~~d~Y~ 96 (201)
-.||++...+..| |-+++..+.+..|+++++++.+++|.... ..++...++ .....-..|++
T Consensus 386 kr~P~Da~lYsNR------------Aac~~kL~~~~~aL~Da~~~ieL~p~~~k--gy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 386 KRDPEDARLYSNR------------AACYLKLGEYPEALKDAKKCIELDPNFIK--AYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred hcCCchhHHHHHH------------HHHHHHHhhHHHHHHHHHHHHhcCchHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666 77777777777777777777777776522 112211111 01112235777
Q ss_pred hccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHH---HHHHHcCChhHHH
Q 037661 97 VLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLIN---EAWEVLSDPKRRE 152 (201)
Q Consensus 97 vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~---~Ay~vLsdp~kR~ 152 (201)
-|.+.+ +..++-..|++.....|-|..+ ++....+. +.-.+|+||..|.
T Consensus 452 ale~dp---~~~e~~~~~~rc~~a~~~~~~~----ee~~~r~~~dpev~~il~d~~m~~ 503 (539)
T KOG0548|consen 452 ALELDP---SNAEAIDGYRRCVEAQRGDETP----EETKRRAMADPEVQAILQDPAMRQ 503 (539)
T ss_pred HHhcCc---hhHHHHHHHHHHHHHhhcCCCH----HHHHHhhccCHHHHHHHcCHHHHH
Confidence 777765 8888888898888876555443 23333221 2334477776663
No 104
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=90.00 E-value=7 Score=37.23 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
+.|..++..+..++..|+|+.|+..|.++..+.|..
T Consensus 125 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~ 160 (615)
T TIGR00990 125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP 160 (615)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch
Confidence 457788999999999999999999999999999964
No 105
>PRK12370 invasion protein regulator; Provisional
Probab=89.82 E-value=6.5 Score=37.16 Aligned_cols=44 Identities=9% Similarity=-0.080 Sum_probs=30.4
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
..+||++..++... |..+...|++++|+..+++|.+++|....+
T Consensus 331 l~ldP~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a 374 (553)
T PRK12370 331 TELDHNNPQALGLL------------GLINTIHSEYIVGSLLFKQANLLSPISADI 374 (553)
T ss_pred HhcCCCCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 45788888887766 666666677777777777777777765433
No 106
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.67 E-value=0.88 Score=42.99 Aligned_cols=64 Identities=22% Similarity=0.187 Sum_probs=49.9
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV 83 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 83 (201)
...+-+...++...--.+.|..++..+.++++.|.|+.|+.+|..|..++|+.+-.-.-+++|-
T Consensus 96 gep~~~~~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY 159 (606)
T KOG0547|consen 96 GEPDEEQKKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACY 159 (606)
T ss_pred CCcchhhhhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHH
Confidence 3444477777766655778899999999999999999999999999999999644444444443
No 107
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=89.54 E-value=3.3 Score=40.16 Aligned_cols=108 Identities=12% Similarity=0.170 Sum_probs=64.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH-----------H-HhhhccC---cchhcc--ccCCCCC
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH-----------K-LAAEKKS---WYAVLG--IRDHRAG 106 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~-----------~-~~~~~~d---~Y~vLg--v~~~~as 106 (201)
..|..++..|++++|+..++++..+.|....+...+..+... . .....++ ++-.+| +.. .-.
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~-~G~ 367 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ-AGK 367 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-CCC
Confidence 347888999999999999999999999986554443322110 0 0001111 111111 111 113
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHh
Q 037661 107 VDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAY 154 (201)
Q Consensus 107 ~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~Y 154 (201)
.++-...|++ ++..+|+..+..- .+....+.+|++.+..+.+|..+
T Consensus 368 ~deA~~~l~~-al~~~P~~~~~~~-~ea~~~~~~~~~~~~~~~~~~~W 413 (656)
T PRK15174 368 TSEAESVFEH-YIQARASHLPQSF-EEGLLALDGQISAVNLPPERLDW 413 (656)
T ss_pred HHHHHHHHHH-HHHhChhhchhhH-HHHHHHHHHHHHhcCCccchhhH
Confidence 3444455555 5667788764443 56778888999999888877433
No 108
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.34 E-value=4 Score=36.14 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 35 ADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 35 n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
++..|++++..+..++..++|.+|+..|.+|..++|+..
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA 115 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA 115 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc
Confidence 678899999999999999999999999999999999884
No 109
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.34 E-value=0.8 Score=23.78 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
+..+|..++..++++.|+..+.++..+.|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 345689999999999999999999988775
No 110
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.29 E-value=4.5 Score=34.30 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=18.0
Q ss_pred CCHHHHHHHH---HHHHHhhCCCCCCCchHHHHHHHHH
Q 037661 105 AGVDVIKKRY---EALVQLFKPDRCSSVGADTANKLIN 139 (201)
Q Consensus 105 as~~eIkkaY---rkla~~~HPDk~~~~~a~~~f~~i~ 139 (201)
-+....++|+ .+++. -+|+..-.+.+..+...|.
T Consensus 135 rD~~~~~~A~~~~~~li~-~yP~S~ya~~A~~rl~~l~ 171 (243)
T PRK10866 135 RDPQHARAAFRDFSKLVR-GYPNSQYTTDATKRLVFLK 171 (243)
T ss_pred cCHHHHHHHHHHHHHHHH-HCcCChhHHHHHHHHHHHH
Confidence 3556667554 44443 4577665554555544443
No 111
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.27 E-value=0.81 Score=28.93 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 037661 43 KHMAEELFKEEKIDSALCVVDRARM 67 (201)
Q Consensus 43 ~~~A~~~l~~~d~~~A~~~~~~a~~ 67 (201)
++.|..++.+||.++|+..++.+..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999885
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=88.64 E-value=1.3 Score=36.36 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC 81 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~ 81 (201)
.+.++.+..++..++..|+++.|+..+.+|.++.|....+...+..
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~ 115 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT 115 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3445556666999999999999999999999999998765544443
No 113
>PRK11189 lipoprotein NlpI; Provisional
Probab=88.19 E-value=3.9 Score=35.42 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
.++..+...|++++|+..+.++.+++|....+
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a 134 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 134 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 34778899999999999999999999987544
No 114
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=87.95 E-value=0.31 Score=43.10 Aligned_cols=55 Identities=24% Similarity=0.270 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCC-----CchHHHHHHHHHHHHHHcCChhHHHHhhccC
Q 037661 104 RAGVDVIKKRYEALVQLFKPDRCS-----SVGADTANKLINEAWEVLSDPKRREAYDLLM 158 (201)
Q Consensus 104 ~as~~eIkkaYrkla~~~HPDk~~-----~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~ 158 (201)
.++..+|+.+|+..++.+||++.. ....++.|+.|.+||++|.+.++|..+|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 457788999999999999999884 2236788999999999999977666666555
No 115
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.94 E-value=0.53 Score=27.70 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=26.0
Q ss_pred CCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHH
Q 037661 19 SPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSAL 59 (201)
Q Consensus 19 ~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~ 59 (201)
...++|++..++... |..+...|++++|+
T Consensus 5 Aie~~P~n~~a~~nl------------a~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 5 AIELNPNNAEAYNNL------------ANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHCCCCHHHHHHH------------HHHHHHCcCHHhhc
Confidence 456799999999999 99999999999986
No 116
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.83 E-value=0.72 Score=43.60 Aligned_cols=57 Identities=18% Similarity=0.114 Sum_probs=49.6
Q ss_pred cCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661 17 SSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH 85 (201)
Q Consensus 17 ~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~ 85 (201)
..++.+||++.++++++ +.++..+.+|+.|..-|.+++.++|....+...+..|-..
T Consensus 416 ~~~ieL~p~~~kgy~RK------------g~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 416 KKCIELDPNFIKAYLRK------------GAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHhcCchHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 35678899999999999 9999999999999999999999999998777666665443
No 117
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=87.83 E-value=1.3 Score=28.96 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=30.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661 49 LFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH 85 (201)
Q Consensus 49 ~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~ 85 (201)
++..|+|++|+..+.++...+|....+.-.+..+...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 37 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK 37 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999988777666655443
No 118
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.82 E-value=1.9 Score=36.66 Aligned_cols=38 Identities=26% Similarity=0.279 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 35 ADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 35 n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
++.+|.+++..+..+|..|+|.+|..-|..|..++|..
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~ 128 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST 128 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc
Confidence 57889999999999999999999999999999999976
No 119
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.76 E-value=3.8 Score=35.23 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHH
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQ 119 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~ 119 (201)
..-+.+|..+|+.||+..|+..+++|.+++|........++ -+|.-+|... .+ .+.||+ ++
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A------------~~Yq~~Ge~~-~A-----~e~Yrk-Al 96 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRA------------HYYQKLGEND-LA-----DESYRK-AL 96 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH------------HHHHHcCChh-hH-----HHHHHH-HH
Confidence 34477899999999999999999999999999864433322 2577777665 32 234444 67
Q ss_pred hhCCCCC
Q 037661 120 LFKPDRC 126 (201)
Q Consensus 120 ~~HPDk~ 126 (201)
..||+..
T Consensus 97 sl~p~~G 103 (250)
T COG3063 97 SLAPNNG 103 (250)
T ss_pred hcCCCcc
Confidence 7777654
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=86.19 E-value=2 Score=37.20 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=14.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+..+++.|+|..|+..+.++.++.|++.
T Consensus 107 gk~~~~~g~~~~A~~~~rkA~~l~p~d~ 134 (257)
T COG5010 107 GKNQIRNGNFGEAVSVLRKAARLAPTDW 134 (257)
T ss_pred HHHHHHhcchHHHHHHHHHHhccCCCCh
Confidence 4445555555555555555555555443
No 121
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=85.54 E-value=2.6 Score=35.66 Aligned_cols=39 Identities=21% Similarity=0.066 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
.+.-+...|..+.+.|+++.|+++++++.+++|....+.
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~ 183 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDAR 183 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 344556679999999999999999999999999986554
No 122
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=85.14 E-value=5.3 Score=29.59 Aligned_cols=57 Identities=16% Similarity=0.047 Sum_probs=46.1
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
-|..+..++.+-....+.+++..+...+..|||..|.+.+.++.+..+.+ .+..++.
T Consensus 43 ~p~~~~~~~~~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~-~l~~L~A 99 (108)
T PF07219_consen 43 LPSRVRRWRRRRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNP-LLNYLLA 99 (108)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHH
Confidence 36667777777788899999999999999999999999999998774443 3555543
No 123
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.03 E-value=2.9 Score=24.29 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNP 70 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p 70 (201)
..+-.+|..+...|++++|+.++.++..+.-
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 4566789999999999999999999886543
No 124
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=84.41 E-value=0.85 Score=42.62 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=48.8
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH 85 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~ 85 (201)
+.++|...+++++| |..+++.+.+..|++.+++...+.|+...+.+++..|+-.
T Consensus 65 ie~dP~~~K~Y~rr------------g~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 65 IELDPTYIKAYVRR------------GTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred hhcCchhhheeeec------------cHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 45689999999999 9999999999999999999999999999999999888855
No 125
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=84.19 E-value=6 Score=31.13 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV 83 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 83 (201)
++++++.|+.++..||+.-|..++..+...+|....++.+...+-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al 114 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADAL 114 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 467889999999999999999999999999999987777666443
No 126
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=84.12 E-value=18 Score=34.43 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=24.5
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
.++|.+...+..+ |..++..|++++|+..+.++..++|....
T Consensus 359 ~l~P~~~~~~~~l------------a~~~~~~g~~~eA~~~~~~al~~~p~~~~ 400 (615)
T TIGR00990 359 ELDPRVTQSYIKR------------ASMNLELGDPDKAEEDFDKALKLNSEDPD 400 (615)
T ss_pred HcCCCcHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 3566666666555 55555556666666666655555555443
No 127
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=83.21 E-value=0.74 Score=38.96 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCC
Q 037661 104 RAGVDVIKKRYEALVQLFKPDRCS 127 (201)
Q Consensus 104 ~as~~eIkkaYrkla~~~HPDk~~ 127 (201)
..|.+|--+.--.+-..+-|++..
T Consensus 159 PmTkEEyearQSvIRrVvDpETGR 182 (225)
T PF10500_consen 159 PMTKEEYEARQSVIRRVVDPETGR 182 (225)
T ss_pred CCCHHHHHHHHhhheeeecCCCCc
Confidence 456666666555566677787764
No 128
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.18 E-value=4.9 Score=37.39 Aligned_cols=95 Identities=17% Similarity=0.097 Sum_probs=67.4
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH---hhHHHHHHHHHhhh------
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN---SHFACYVVHKLAAE------ 90 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~---~~l~~~~v~~~~~~------ 90 (201)
.-+|+.+.+++.-| .....-.++.+.|+++++++.+++|.....- .+..+|++....+.
T Consensus 196 lkld~~n~~al~vr------------g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 196 LKLDATNAEALYVR------------GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred HhcccchhHHHHhc------------ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 34688888888888 9999999999999999999999999885544 44445554422111
Q ss_pred -----ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 037661 91 -----KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS 128 (201)
Q Consensus 91 -----~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~ 128 (201)
...|=+-|+|+| . +.+-.-+-|-.+++..++-....
T Consensus 264 ~y~~A~E~Yteal~idP-~-n~~~naklY~nra~v~~rLgrl~ 304 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDP-S-NKKTNAKLYGNRALVNIRLGRLR 304 (486)
T ss_pred chhHHHHHHHHhhcCCc-c-ccchhHHHHHHhHhhhcccCCch
Confidence 113556788887 5 45556777888888887766543
No 129
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.92 E-value=5.4 Score=34.34 Aligned_cols=106 Identities=16% Similarity=0.087 Sum_probs=68.5
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH-----------HHHHHh
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY-----------VVHKLA 88 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~-----------~v~~~~ 88 (201)
..+||++..++..+ |..+...|+.+.|.+.|++|..+.|....+..-.... .-...+
T Consensus 62 L~~DPs~~~a~~~~------------A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~A 129 (250)
T COG3063 62 LEHDPSYYLAHLVR------------AHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERA 129 (250)
T ss_pred HHhCcccHHHHHHH------------HHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHH
Confidence 44677777777777 9999999999999999999999999886554322211 111123
Q ss_pred hhccCcch------hccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHH
Q 037661 89 AEKKSWYA------VLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLIN 139 (201)
Q Consensus 89 ~~~~d~Y~------vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~ 139 (201)
...++||+ -+|+=...+....-.+.|-+.++.+.|+..... .+.++...
T Consensus 130 l~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~--l~~a~~~~ 184 (250)
T COG3063 130 LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPAL--LELARLHY 184 (250)
T ss_pred HhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHH--HHHHHHHH
Confidence 34445544 444422134445667778888999988776443 44444333
No 130
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=82.66 E-value=3.2 Score=27.42 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=30.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV 83 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 83 (201)
...+++.++|+.|+..++++..++|....+......+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 39 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCL 39 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 46789999999999999999999999765544444433
No 131
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=82.60 E-value=6.7 Score=35.47 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=49.8
Q ss_pred hCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH--HHhhhccCcchhccccC
Q 037661 34 LADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH--KLAAEKKSWYAVLGIRD 102 (201)
Q Consensus 34 ~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~--~~~~~~~d~Y~vLgv~~ 102 (201)
.++.||..++..|....+.|..++|.++++.|..+.|+...+--.+...... -+-.....|.+-|-+++
T Consensus 111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 4567899999999999999999999999999999999986553222222111 01122345777888877
No 132
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=82.42 E-value=2.3 Score=37.24 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=42.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCC
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPD 124 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPD 124 (201)
.|..++..|+|++|...+..|...+|....+-.-+.++ +..+|-+. ++-.+|....+..||+
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~------------~~~~gk~~------~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC------------SLHLGKPT------EAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH------------HHHTT-TC------HHHHHHHHHCHHHTTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH------------HHHhCCCh------hHHHHHHHHHHHhCCC
Confidence 39999999999999999999999998876432222222 22333332 3445777778888998
Q ss_pred CC
Q 037661 125 RC 126 (201)
Q Consensus 125 k~ 126 (201)
+.
T Consensus 269 h~ 270 (290)
T PF04733_consen 269 HP 270 (290)
T ss_dssp SH
T ss_pred Ch
Confidence 64
No 133
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=82.40 E-value=8.1 Score=33.63 Aligned_cols=86 Identities=16% Similarity=0.281 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHH
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQ 119 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~ 119 (201)
..+....+..+..|||.+|+..+...+.+--...++ ..+.- +..+-.+++. .....+...+.+++.
T Consensus 128 ~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~----~c~~~--L~~~L~e~~~--------~i~~~ld~~l~~~~~ 193 (291)
T PF10475_consen 128 QQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGY----SCVRH--LSSQLQETLE--------LIEEQLDSDLSKVCQ 193 (291)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc----hHHHH--HhHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 455566777899999999999999888764322211 11111 1111122332 245567777888887
Q ss_pred hhCCCCCCCchHHHHHHHHHHHHHHcCCh
Q 037661 120 LFKPDRCSSVGADTANKLINEAWEVLSDP 148 (201)
Q Consensus 120 ~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp 148 (201)
.+.| ..|..|.+||..|++.
T Consensus 194 ~Fd~---------~~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 194 DFDP---------DKYSKVQEAYQLLGKT 213 (291)
T ss_pred hCCH---------HHHHHHHHHHHHHhhh
Confidence 6644 5677889999988864
No 134
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=81.60 E-value=16 Score=29.68 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
.+.+|..++..|+++.|+..+.+..+.+|..+.
T Consensus 45 ~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 45 QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 344455666666666666666666666665543
No 135
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=81.16 E-value=22 Score=35.10 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=18.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
|+..++.|.+++|.+.++.+.+++|....
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd~~~ 121 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPDSSE 121 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCcHH
Confidence 66666666666666666666666666543
No 136
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=80.58 E-value=3.8 Score=31.04 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCch-----HHHHHHHHHHHHHHcCChh
Q 037661 104 RAGVDVIKKRYEALVQLFKPDRCSSVG-----ADTANKLINEAWEVLSDPK 149 (201)
Q Consensus 104 ~as~~eIkkaYrkla~~~HPDk~~~~~-----a~~~f~~i~~Ay~vLsdp~ 149 (201)
..+..+++.+.|.+-+++|||...... -++-++.|+.-.+.|..+.
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 556788999999999999999765544 4555778887777777553
No 137
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=79.96 E-value=5.8 Score=40.22 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=36.3
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
-.|.|+-+|+.+ |...+..+||.+|+.+|.++.+++|...
T Consensus 159 ~sp~Nil~LlGk------------A~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 159 QSPDNILALLGK------------ARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred hCCcchHHHHHH------------HHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 368888899999 9999999999999999999999999764
No 138
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=79.73 E-value=7 Score=30.07 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
+-+.+++.++..|++++|...+-+|...+|.+..+-.++
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 368889999999999999999999999999987554443
No 139
>PRK12370 invasion protein regulator; Provisional
Probab=78.77 E-value=6.2 Score=37.30 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
....|..++..|++++|+..++++.+++|.....
T Consensus 375 ~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 375 KYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 3444778899999999999999999999997543
No 140
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=78.35 E-value=10 Score=33.44 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661 35 ADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH 85 (201)
Q Consensus 35 n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~ 85 (201)
|...++.+.-+++.++..|++..|..-|.+|.++.|....+.-.+...-+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~ 202 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYY 202 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 445556666779999999999999999999999999987665555444333
No 141
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.00 E-value=3.3 Score=37.90 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
+++.+..+|..|.|++|+..|.++..++|.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~ 129 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPH 129 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCC
Confidence 455588899999999999999999988883
No 142
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.74 E-value=3.7 Score=22.41 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 037661 41 ASKHMAEELFKEEKIDSALCVVD 63 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~ 63 (201)
..+..|..++..||+++|.+.++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34567999999999999998875
No 143
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=76.71 E-value=8.2 Score=25.85 Aligned_cols=30 Identities=23% Similarity=0.139 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
+.-+..+|..++..|+|+.|+..++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444556799999999999999999999976
No 144
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=76.43 E-value=12 Score=30.16 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=55.5
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHH--HhhhccCcchhc
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHK--LAAEKKSWYAVL 98 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~--~~~~~~d~Y~vL 98 (201)
.+||++...++.- +..+...|+|.+|+..|.+|..+.|+.+....-+.+|.... +......|..++
T Consensus 63 ~~Dp~~~~y~~gL------------G~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 63 IYDAWSFDYWFRL------------GECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HhCcccHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3688999988888 99999999999999999999999998876666665554331 112233455555
Q ss_pred cccCCCCCHHHHHHHH
Q 037661 99 GIRDHRAGVDVIKKRY 114 (201)
Q Consensus 99 gv~~~~as~~eIkkaY 114 (201)
..-.......+||.+=
T Consensus 131 ~~~~~~~~~~~l~~~A 146 (157)
T PRK15363 131 RICGEVSEHQILRQRA 146 (157)
T ss_pred HHhccChhHHHHHHHH
Confidence 4442022445565543
No 145
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=76.43 E-value=39 Score=27.35 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=15.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+|..++..|+++.|+..+.++.+.+|...
T Consensus 76 la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 76 LAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 34555555555555555555555555443
No 146
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=76.21 E-value=8.2 Score=36.10 Aligned_cols=91 Identities=14% Similarity=0.062 Sum_probs=60.8
Q ss_pred ccCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHH--HhhhccC
Q 037661 16 LSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHK--LAAEKKS 93 (201)
Q Consensus 16 ~~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~--~~~~~~d 93 (201)
++++..++|.++.|.... |+.++..|.+..++.+++++...+|..- +...+..+-+.. ....-.-
T Consensus 427 ~ek~L~~~P~Y~~AV~~~------------AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 427 AEKSLKINPIYTPAVNLI------------AELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred HHhhhccCCccHHHHHHH------------HHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHH
Confidence 356778899999999998 9999999999999999999999999873 333333221110 0111124
Q ss_pred cchhccccCCCCCHHHHHHHHHHHHHhhC
Q 037661 94 WYAVLGIRDHRAGVDVIKKRYEALVQLFK 122 (201)
Q Consensus 94 ~Y~vLgv~~~~as~~eIkkaYrkla~~~H 122 (201)
||.-|.+.| ..+.-++-.++|=+.-.
T Consensus 494 y~~ALr~dP---~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 494 YYKALRQDP---KSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHhcCc---cchHHHHHHHHHHhccC
Confidence 666777776 44444555555554443
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=76.02 E-value=9.3 Score=24.24 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 43 KHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 43 ~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
..+|..++..|+++.|+..+.++....|...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 34 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNA 34 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccH
Confidence 4457777788888888888888888877764
No 148
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=75.99 E-value=16 Score=29.80 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=44.9
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661 27 REALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC 81 (201)
Q Consensus 27 ~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~ 81 (201)
.+..+..+...-|++-+.+|.-+++.|.|..|+..++.+...+|........+..
T Consensus 129 A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~ 183 (203)
T PF13525_consen 129 AKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALAR 183 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 3445566777888999999999999999999999999999999999766554443
No 149
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=75.75 E-value=6.6 Score=38.72 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=32.7
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
...|.+...+... |..+...|++++|+..++++..++|....+
T Consensus 387 ~~~P~n~~l~~~l------------A~l~~~~g~~~~A~~~l~~al~l~Pd~~~l 429 (765)
T PRK10049 387 YNAPGNQGLRIDY------------ASVLQARGWPRAAENELKKAEVLEPRNINL 429 (765)
T ss_pred HhCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Confidence 3467777777777 888888888888888888888888876543
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=75.34 E-value=13 Score=23.53 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
.-+..+|..++..++++.|+..+.++..+.|...
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 4566678888899999999999999999888776
No 151
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=75.29 E-value=4.5 Score=36.56 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhh
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSH 78 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~ 78 (201)
++-.+-.|..++..++|++|+..++++....|+......+
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~L 367 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWL 367 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3334455999999999999999999999999998753333
No 152
>PRK11189 lipoprotein NlpI; Provisional
Probab=75.23 E-value=5.6 Score=34.43 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=25.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+..++..|++++|+..+.++.+++|...
T Consensus 139 g~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 139 GIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 7778899999999999999999999875
No 153
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=74.63 E-value=11 Score=29.28 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=20.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
++..++..|+++.|+..+.++..+.|...
T Consensus 71 la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 71 LALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 45556667777777777777777777654
No 154
>PF13446 RPT: A repeated domain in UCH-protein
Probab=74.59 E-value=8.1 Score=25.59 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.3
Q ss_pred CcchhccccCCCCCHHHHHHHHHHHHH
Q 037661 93 SWYAVLGIRDHRAGVDVIKKRYEALVQ 119 (201)
Q Consensus 93 d~Y~vLgv~~~~as~~eIkkaYrkla~ 119 (201)
+-|++|||++ +.+.+.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~-~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDE-DTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCC-CCCHHHHHHHHHHHHH
Confidence 3489999999 9999999999998777
No 155
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.54 E-value=8.5 Score=31.07 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=26.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV 83 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 83 (201)
+..++..|+|.+|++.++.+..--|.......++..|-
T Consensus 51 ~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 51 GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 66777778888888888777766666665555555544
No 156
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=74.24 E-value=7.8 Score=35.64 Aligned_cols=75 Identities=11% Similarity=0.095 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHH----HhhhccCcchhccccCCCCCHHHHHHHHHHH
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHK----LAAEKKSWYAVLGIRDHRAGVDVIKKRYEAL 117 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~----~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkl 117 (201)
.+.+|..+++.++|..|+..++++..+.|.... .+.+.-.++. ......+|-++|.+.| .-.+|+....+|
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K--ALyRrG~A~l~~~e~~~A~~df~ka~k~~P---~Nka~~~el~~l 334 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVK--ALYRRGQALLALGEYDLARDDFQKALKLEP---SNKAARAELIKL 334 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHhhccHHHHHHHHHHHHHhCC---CcHHHHHHHHHH
Confidence 456788999999999999999999999998732 2333222221 1233457888888887 457777777777
Q ss_pred HHhh
Q 037661 118 VQLF 121 (201)
Q Consensus 118 a~~~ 121 (201)
..++
T Consensus 335 ~~k~ 338 (397)
T KOG0543|consen 335 KQKI 338 (397)
T ss_pred HHHH
Confidence 7665
No 157
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=73.72 E-value=23 Score=33.20 Aligned_cols=65 Identities=31% Similarity=0.114 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCcccCCCCCChhhHH----HHHHhhCHHHHHHHHH------------------HHHHHHhcCCHHHHHHH
Q 037661 4 SSSSSSSSSSSSLSSSPFNNPEARE----ALFSKLADKEAEASKH------------------MAEELFKEEKIDSALCV 61 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~r~n~~ea~~~~~------------------~A~~~l~~~d~~~A~~~ 61 (201)
+++|.|++.+.+.+...-.+++... +|...+.-++|..+.+ +|-.+...|++++|+..
T Consensus 55 ~~~~~~~~~~~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~ 134 (453)
T PLN03098 55 SSSSPSSSPAKDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADC 134 (453)
T ss_pred ccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444444455555555555443 4455556666665544 45567788999999999
Q ss_pred HHHHHHh
Q 037661 62 VDRARMK 68 (201)
Q Consensus 62 ~~~a~~~ 68 (201)
+.+|..+
T Consensus 135 LrrALel 141 (453)
T PLN03098 135 LRTALRD 141 (453)
T ss_pred HHHHHHh
Confidence 9999987
No 158
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=72.88 E-value=7.3 Score=23.76 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
-...+++.-+..++|+.|+.+|.++..+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456799999999999999999998865
No 159
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.67 E-value=2.2 Score=41.30 Aligned_cols=22 Identities=73% Similarity=0.641 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCcccCCCCCChh
Q 037661 4 SSSSSSSSSSSSLSSSPFNNPE 25 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~p~ 25 (201)
|+|||+||+|+|.++|...+|.
T Consensus 13 s~s~~~s~~~~ss~~s~~~ep~ 34 (1103)
T KOG1420|consen 13 SSSSSSSSSSSSSSSSSVHEPK 34 (1103)
T ss_pred ccccCCCCCCcccccccccCCc
Confidence 3333444444444555444443
No 160
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.02 E-value=2.6 Score=39.97 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=36.2
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
.+||+|...+..| +...|-.++++.|+.+++++++++|+.
T Consensus 388 ~ldp~n~dvYyHR------------gQm~flL~q~e~A~aDF~Kai~L~pe~ 427 (606)
T KOG0547|consen 388 DLDPENPDVYYHR------------GQMRFLLQQYEEAIADFQKAISLDPEN 427 (606)
T ss_pred hcCCCCCchhHhH------------HHHHHHHHHHHHHHHHHHHHhhcChhh
Confidence 4678888888888 999999999999999999999999987
No 161
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=71.82 E-value=13 Score=25.02 Aligned_cols=32 Identities=19% Similarity=-0.007 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
+.|..++..|..+=..|+++.|+..|.++...
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 46788889999999999999999999887743
No 162
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=71.35 E-value=35 Score=32.46 Aligned_cols=18 Identities=6% Similarity=0.045 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHcCCh
Q 037661 131 ADTANKLINEAWEVLSDP 148 (201)
Q Consensus 131 a~~~f~~i~~Ay~vLsdp 148 (201)
|.++|..|.+.|+..-+.
T Consensus 324 ALk~~~~v~k~f~~~~~D 341 (517)
T PF12569_consen 324 ALKRFHAVLKHFDDFEED 341 (517)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 666677777666655443
No 163
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=71.19 E-value=18 Score=25.68 Aligned_cols=64 Identities=13% Similarity=0.045 Sum_probs=41.6
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
++|.-+++|+.+ .++..||+.+-++.++++.=-..+.....+.|..-..+.. ...|...|....
T Consensus 2 CRNIk~LfnfdP-PAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~~ia----A~areLLDaLet 65 (88)
T COG5552 2 CRNIKELFNFDP-PATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVAEIA----ATARELLDALET 65 (88)
T ss_pred ccchHHHhCCCC-CCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHH----HHHHHHHHhccc
Confidence 356678899999 9999999999888777775444444444566655444333 233555555443
No 164
>PF15469 Sec5: Exocyst complex component Sec5
Probab=70.94 E-value=16 Score=29.25 Aligned_cols=77 Identities=10% Similarity=0.030 Sum_probs=49.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc----hhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHHhh
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNH----QGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLF 121 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~ 121 (201)
-..++..|||+.++++|.+|+.++... .-+..+...++.. +..-....|+.|.-+ ..+.++..+..+.|. .+
T Consensus 93 L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~i-i~~~r~~l~~~L~~~--~~s~~~~~~~i~~Ll-~L 168 (182)
T PF15469_consen 93 LRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKI-IEEFREKLWEKLLSP--PSSQEEFLKLIRKLL-EL 168 (182)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC--CCCHHHHHHHHHHHH-hC
Confidence 456889999999999999999988655 2344555555544 222233445555432 347777777775554 45
Q ss_pred CCCCC
Q 037661 122 KPDRC 126 (201)
Q Consensus 122 HPDk~ 126 (201)
+|+-+
T Consensus 169 ~~~~d 173 (182)
T PF15469_consen 169 NVEED 173 (182)
T ss_pred CCCCC
Confidence 66544
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=70.72 E-value=7.7 Score=26.62 Aligned_cols=42 Identities=14% Similarity=0.284 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
+..-+..+|..+++.|+|++|+.++.+ ..+.+....+.-++.
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a 65 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLA 65 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHH
Confidence 334455579999999999999999988 666665544444443
No 166
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=70.70 E-value=49 Score=26.81 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 43 KHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 43 ~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
..+|..++..|++..|+..+.++...+|..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence 4678889999999999999999999999764
No 167
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=70.56 E-value=8.4 Score=35.35 Aligned_cols=47 Identities=11% Similarity=-0.064 Sum_probs=34.4
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
+|--+++|+.+| +.+....|+..+|..+++.+.++-|....+...+.
T Consensus 160 Ld~~Y~KAYSRR------------~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 160 LDKLYVKAYSRR------------MQARESLGNNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred hhHHHHHHHHHH------------HHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 455566666666 77777888888888888888888888765554444
No 168
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=70.01 E-value=11 Score=26.83 Aligned_cols=33 Identities=15% Similarity=-0.070 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
=+.|.++|+.|..+-..|+.+.|+..|.++++.
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999998854
No 169
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=69.90 E-value=50 Score=28.67 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=56.1
Q ss_pred hHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccC
Q 037661 26 AREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRD 102 (201)
Q Consensus 26 ~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~ 102 (201)
+.++.+..+|..-|..=+.+|+=+++.|.|..|+.-++.+.+-+|....+...+..+... |.-|||..
T Consensus 154 dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~ea---------Y~~lgl~~ 221 (254)
T COG4105 154 DAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEA---------YYALGLTD 221 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHH---------HHHhCChH
Confidence 456666777888888889999999999999999999999999999887777777665555 55588876
No 170
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=69.83 E-value=29 Score=26.39 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhcc
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLG 99 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLg 99 (201)
++.+..|...+..+++..|-+.+++|.-+-..... .-...-+.-+..+...+|+-||+|
T Consensus 10 ~~el~~a~~a~~~~~~~~aw~hLErAHIlgQ~~~~-~H~~~H~~ML~~a~r~rd~rEv~G 68 (112)
T PF12487_consen 10 DAELEAAREALAAGDLQQAWRHLERAHILGQPYPW-LHTRVHWAMLRFALRQRDRREVLG 68 (112)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhHHhcCCchh-HHHHHHHHHHHHHHHccCHHHHHH
Confidence 45677899999999999999999999976655431 112222222234555666666665
No 171
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.38 E-value=27 Score=30.60 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
.+.+.++|+.++..|+|+.|.-.++...-+.|..+-....++
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rla 195 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLA 195 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 467888999999999999999999999999998875544443
No 172
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=69.32 E-value=66 Score=33.14 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=20.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
|..+.+.|++++|+..+.++..++|....+
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~Pd~~~a 645 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELEPNNSNY 645 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 666777777777777777777777766543
No 173
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=69.30 E-value=68 Score=33.24 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=29.5
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
.+|++...+... |..++..|++++|+..|.++..+.|....+
T Consensus 598 ~~p~~~~~~~~L------------a~~~~~~g~~~~A~~~y~~al~~~P~~~~a 639 (1157)
T PRK11447 598 QQPPSTRIDLTL------------ADWAQQRGDYAAARAAYQRVLTREPGNADA 639 (1157)
T ss_pred hCCCCchHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 355565555555 777788888888888888888888776443
No 174
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=69.06 E-value=7.5 Score=26.03 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
+.-...+|..+...|+++.|+..++++..++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5667788999999999999999999998764
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=68.80 E-value=26 Score=30.22 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=19.0
Q ss_pred HHHH-HhcCCHHHHHHHHHHHHHhCCCc
Q 037661 46 AEEL-FKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 46 A~~~-l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
|..+ +..|+|++|+..+.+....+|..
T Consensus 149 A~~l~~~~~~y~~Ai~af~~fl~~yP~s 176 (263)
T PRK10803 149 AIALVQDKSRQDDAIVAFQNFVKKYPDS 176 (263)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 5554 45677777777777777777766
No 176
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=68.64 E-value=79 Score=27.44 Aligned_cols=27 Identities=7% Similarity=0.132 Sum_probs=16.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
+...|+.|+|.+|++.++++...+|..
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s 67 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFS 67 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 555566666666666666666665554
No 177
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=67.71 E-value=24 Score=28.08 Aligned_cols=49 Identities=27% Similarity=0.394 Sum_probs=39.1
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEE-KIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~-d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
|++..++++.. .+.+++.++..| +++++...+-+|...+|.+..+-.++
T Consensus 82 d~~e~E~~Fl~--------eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iy 131 (148)
T TIGR00985 82 DPSEKEAFFLQ--------EVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIY 131 (148)
T ss_pred CHHHHHHHHHH--------HHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 55556666555 788899999999 99999999999999999987554433
No 178
>PRK05685 fliS flagellar protein FliS; Validated
Probab=67.04 E-value=26 Score=26.96 Aligned_cols=45 Identities=11% Similarity=-0.001 Sum_probs=35.9
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNP 70 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p 70 (201)
.+|.-+--++.. .+.+.+..|..++..+|++++...+.+|..+.-
T Consensus 22 asp~~Li~mLyd----gai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~ 66 (132)
T PRK05685 22 ASPHKLIQMLYE----GALSFLAQAKLAIEQGDIEAKGEYLSKAINIIN 66 (132)
T ss_pred CCHHHHHHHHHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 356666555554 789999999999999999999998888886643
No 179
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=65.50 E-value=1.4e+02 Score=30.92 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=22.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
+....+.|++++|+..+.++.++.|.
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l~P~ 608 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNIAPS 608 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 56666779999999999999999996
No 180
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=65.38 E-value=64 Score=29.07 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=43.6
Q ss_pred hhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 24 PEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 24 p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
|..+..++.+..+..+.+.+..|...+..|||..|.+.+.++....|..
T Consensus 69 p~~~~~~~~~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~ 117 (409)
T TIGR00540 69 GAHSRGWFSGRKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP 117 (409)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC
Confidence 6667777777777889999999999999999999999999999988875
No 181
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=65.31 E-value=27 Score=26.90 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=22.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
+..++..|+++.|...+.++...+|....+
T Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 171 (234)
T TIGR02521 142 GLCALKAGDFDKAEKYLTRALQIDPQRPES 171 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCChHH
Confidence 677778888888888888888877765433
No 182
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.24 E-value=2 Score=40.22 Aligned_cols=43 Identities=19% Similarity=0.094 Sum_probs=29.0
Q ss_pred CCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 18 SSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 18 ~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
+...+|||+..-...| |.++++.++|.+|+.++.+|.+++|..
T Consensus 29 KaI~ldpnca~~~anR------------a~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 29 KAIELDPNCAIYFANR------------ALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred HHHhcCCcceeeechh------------hhhheeechhhhHHHHHHhhhhcCchh
Confidence 3445666666666666 677777777777777777777777655
No 183
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=64.95 E-value=10 Score=25.92 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRA 65 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a 65 (201)
-..-.|..++..|++++|+..+.+|
T Consensus 60 ~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 60 IHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 3344599999999999999999875
No 184
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=64.79 E-value=18 Score=25.41 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=30.5
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 27 REALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 27 ~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
..+++.. +..++..|+++.|+..+.++...+|...
T Consensus 39 ~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 39 PNAHYWL------------GEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred HHHHHHH------------HHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 5667777 9999999999999999999999998853
No 185
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=64.45 E-value=17 Score=25.38 Aligned_cols=34 Identities=18% Similarity=-0.113 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
-..|..++..|...-..|++++|+.+|..+...+
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3567788888999999999999999998887543
No 186
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=63.73 E-value=28 Score=27.27 Aligned_cols=33 Identities=9% Similarity=-0.118 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
......|..++..|++++|+..++++..+.|..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 68 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDP 68 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 333444777777777777777777777666543
No 187
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=62.55 E-value=18 Score=35.11 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
.+|..++..|+++.|+..+.++..+.|....+
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a 146 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFSGNSQI 146 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 33777788888888888888888887776443
No 188
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=62.48 E-value=19 Score=24.60 Aligned_cols=32 Identities=16% Similarity=0.008 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
++|..++..|..+=..|++++|+..|..+...
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56777888899999999999999999887743
No 189
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.34 E-value=24 Score=34.84 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=18.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
|..+-+.|++++|+..|..|.++.|+.
T Consensus 395 a~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 666666777777777777777777654
No 190
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=62.25 E-value=1.4e+02 Score=29.50 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
....+|..+...|+++.|+..++++..+.|....+...+
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 356668889999999999999999999999876554333
No 191
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=61.62 E-value=20 Score=37.10 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=37.7
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
..++|++..++... ++.++..|+.++|...+.++.++.|....+.
T Consensus 55 ~~~~p~~p~~~~~~------------~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~ 99 (1157)
T PRK11447 55 ELIDPNNPDVIAAR------------FRLLLRQGDSDGAQKLLDRLSQLAPDSNAYR 99 (1157)
T ss_pred HccCCCCHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHhhCCCChHHH
Confidence 34577777777666 8999999999999999999999999886543
No 192
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=61.45 E-value=16 Score=30.26 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHH
Q 037661 104 RAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152 (201)
Q Consensus 104 ~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~ 152 (201)
+|+.+||.+|+.++..+|--| ++.-..|-.||+.+.=...|.
T Consensus 3 ~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~ILM~rL~~ 44 (194)
T PF11833_consen 3 DASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAILMERLRQ 44 (194)
T ss_pred CCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998322 566778999999866443333
No 193
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=61.17 E-value=53 Score=22.87 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
......|..++..|++++|+..+.++...+|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 36 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST 36 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence 3456679999999999999999999999998753
No 194
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=60.79 E-value=81 Score=24.88 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
..+-..|+..|+.|+|.+|+..++....-+|..+-.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya 46 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA 46 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc
Confidence 344455999999999999999999999999987644
No 195
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=60.72 E-value=56 Score=27.61 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=42.1
Q ss_pred HHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661 31 FSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC 81 (201)
Q Consensus 31 ~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~ 81 (201)
+..+...-|+..+.+|.-+++.|.|..|+.-++.+..-+|..+...+.+-.
T Consensus 167 l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~ 217 (243)
T PRK10866 167 LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPL 217 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 344556677888999999999999999999999999999998766554443
No 196
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=60.04 E-value=20 Score=25.10 Aligned_cols=32 Identities=22% Similarity=0.102 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
..|..++..|..+-..|++++|+.+|..+...
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35677777899999999999999999887743
No 197
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.44 E-value=22 Score=24.94 Aligned_cols=32 Identities=16% Similarity=0.039 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
.|..++..|..+-..|++++|+..|..+...+
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999987544
No 198
>PRK10941 hypothetical protein; Provisional
Probab=59.24 E-value=30 Score=30.07 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=33.3
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
++.|-....+..| =+-.+=..+++.++|+.|++..+....+.|...
T Consensus 170 ~L~~a~~~~il~R-------ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp 215 (269)
T PRK10941 170 DLDEADNIEVIRK-------LLDTLKAALMEEKQMELALRASEALLQFDPEDP 215 (269)
T ss_pred HcCCCCHHHHHHH-------HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH
Confidence 5666666666666 122234457888999999999999999999874
No 199
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.05 E-value=12 Score=36.43 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+.|-.++..+--.+|.+.|++++++|.+++|...
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa 455 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA 455 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc
Confidence 3444448888889999999999999999999663
No 200
>PRK14574 hmsH outer membrane protein; Provisional
Probab=58.85 E-value=90 Score=31.51 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=44.3
Q ss_pred CCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661 18 SSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC 81 (201)
Q Consensus 18 ~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~ 81 (201)
.+...||+..++...+ |..++-.||+.+|.+.+++.....|...++.-.++.
T Consensus 407 ~~~~pn~d~~~~~~l~------------a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~ 458 (822)
T PRK14574 407 PGKEPNDDWIEGQTLL------------VQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALAS 458 (822)
T ss_pred CCCCCCccHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4466789999998888 999999999999999999999999999877654443
No 201
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=58.81 E-value=1.4e+02 Score=28.23 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHcCCh
Q 037661 133 TANKLINEAWEVLSDP 148 (201)
Q Consensus 133 ~~f~~i~~Ay~vLsdp 148 (201)
..+..+.+||+.++|-
T Consensus 409 ~~w~~LAqay~~~g~~ 424 (484)
T COG4783 409 NGWDLLAQAYAELGNR 424 (484)
T ss_pred hHHHHHHHHHHHhCch
Confidence 5566677777777664
No 202
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=58.73 E-value=72 Score=31.51 Aligned_cols=53 Identities=9% Similarity=-0.025 Sum_probs=41.7
Q ss_pred CCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661 18 SSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY 82 (201)
Q Consensus 18 ~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 82 (201)
....+.|++..+.... |..+.+.+.+++|+..++++....|......-++..+
T Consensus 111 ~~~~~~Pd~~~a~~~~------------a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 111 GIHQRFPDSSEAFILM------------LRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred HHHhhCCCcHHHHHHH------------HHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 3456788899988888 8888888999999999999888888876555544443
No 203
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=58.64 E-value=52 Score=30.09 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=37.6
Q ss_pred CCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 18 SSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 18 ~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
....-.++.++...++ +|.-+|..+||+-|...|+-+++=+-.+.
T Consensus 198 ~~~~Y~~~S~E~q~R~-----------LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk 242 (414)
T PF12739_consen 198 SQNYYSADSPEAQMRR-----------LADLAFMLRDYELAYSTYRLLKKDFKNDK 242 (414)
T ss_pred ccCccCCCChHHHHHH-----------HHHHHHHHccHHHHHHHHHHHHHHHhhch
Confidence 3456678888888888 79999999999999999999998776554
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=58.28 E-value=28 Score=30.03 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=35.0
Q ss_pred Chhh---HHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhh
Q 037661 23 NPEA---REALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSH 78 (201)
Q Consensus 23 ~p~~---~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~ 78 (201)
.|++ ..+++.. |..++..|++++|+..+.++...+|........
T Consensus 173 yP~s~~a~~A~y~L------------G~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 173 YPDSTYQPNANYWL------------GQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CcCCcchHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 6666 4567666 999999999999999999999999986544433
No 205
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=57.68 E-value=22 Score=25.02 Aligned_cols=33 Identities=12% Similarity=-0.066 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
+.|..++..|...-..|++++|+.+|..|...+
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence 456667777888888999999999999988655
No 206
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=57.40 E-value=87 Score=24.15 Aligned_cols=37 Identities=19% Similarity=-0.042 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
...+.....++..++..|++++|+..+.++..+.|..
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~ 68 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP 68 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc
Confidence 4456777888999999999999999999999987754
No 207
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.32 E-value=41 Score=31.40 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=49.0
Q ss_pred HHHHHHhhCHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhcccc
Q 037661 27 REALFSKLADKEAEA-SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIR 101 (201)
Q Consensus 27 ~~~~~~r~n~~ea~~-~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~ 101 (201)
++.+...+-|+--.+ ..+++..++..|+++.|+++|-+++..+-....+-.|...+- .++-...||..||-..
T Consensus 137 Lk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i--~VSI~~~nw~hv~sy~ 210 (466)
T KOG0686|consen 137 LKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLI--LVSIYMGNWGHVLSYI 210 (466)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHH--HHHHhhcchhhhhhHH
Confidence 334444444444433 346788888899999999999999999988766655543322 2234566898888654
No 208
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=56.82 E-value=28 Score=30.27 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH 85 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~ 85 (201)
..+-.+.+.|++++|++.|.++..++|..+.+..-+.....+
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L 180 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence 347789999999999999999999999998766555544433
No 209
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=56.36 E-value=27 Score=23.99 Aligned_cols=32 Identities=19% Similarity=-0.005 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
+.|..++..|...-..|++++|+..|..+...
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45777888899999999999999999887744
No 210
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=56.35 E-value=53 Score=28.57 Aligned_cols=33 Identities=18% Similarity=0.076 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 43 KHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 43 ~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
..++..+...|+++.|+..+.++..+.|.....
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~ 285 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEYPGADLL 285 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH
Confidence 456788999999999999999999999976533
No 211
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=56.24 E-value=25 Score=33.29 Aligned_cols=29 Identities=7% Similarity=-0.067 Sum_probs=19.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+|..++..|+|+.|+..+.++....|...
T Consensus 62 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 90 (899)
T TIGR02917 62 LGKIYLALGDYAAAEKELRKALSLGYPKN 90 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCChh
Confidence 36667777777777777777777666543
No 212
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=56.22 E-value=22 Score=32.42 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=43.2
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY 82 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 82 (201)
.+++.++++++| +..++...+++.|++.+..++...|....|...+...
T Consensus 304 ~~~s~tka~~Rr------------~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 304 DERSKTKAHYRR------------GQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cChhhCcHHHHH------------HhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 688888999999 9999999999999999999999999998777665543
No 213
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=55.02 E-value=31 Score=30.44 Aligned_cols=40 Identities=18% Similarity=0.048 Sum_probs=28.6
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+||.++.++..= |..++..|+|..|+..++......|...
T Consensus 222 ~D~~~iral~lL------------A~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 222 LDPANIRALSLL------------AFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred cCCccHHHHHHH------------HHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 466666666666 7777888888888888887777776653
No 214
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=54.98 E-value=18 Score=32.74 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH--HHHHhCCCchhHH
Q 037661 42 SKHMAEELFKEEKIDSALCVVD--RARMKNPNHQGLN 76 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~--~a~~~~p~~~~~~ 76 (201)
..-.+..+++.|+|++|+..++ .+....|......
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 3356888999999999999999 4666788776433
No 215
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=54.84 E-value=48 Score=26.68 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=34.4
Q ss_pred HhhCHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 32 SKLADKEA-EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 32 ~r~n~~ea-~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
....+++- ....++|+.+++.||++.|++.|.++...+-.....-
T Consensus 28 ~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~i 73 (177)
T PF10602_consen 28 SNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKI 73 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHH
Confidence 34445554 4566789999999999999999999998877664433
No 216
>PRK11906 transcriptional regulator; Provisional
Probab=54.67 E-value=33 Score=32.25 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
..++|+...++... |..++-.|+.++|+..++++.++.|....+
T Consensus 365 ~~L~Pn~A~~~~~~------------~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 365 KIHSTDIASLYYYR------------ALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hhcCCccHHHHHHH------------HHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 34566666666666 777778888888888888888888876533
No 217
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.24 E-value=1e+02 Score=27.25 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=41.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCC
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPD 124 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPD 124 (201)
.|..++..|+|++|...++.|..-++..+..-.-+.++..+ +|.+. ++..+|-.-.+..||.
T Consensus 213 ~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~------------~Gkd~------~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 213 QAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALH------------LGKDA------EVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH------------hCCCh------HHHHHHHHHHHhcCCc
Confidence 48889999999999999999998888876443333232222 23332 3445566666777776
Q ss_pred CC
Q 037661 125 RC 126 (201)
Q Consensus 125 k~ 126 (201)
+.
T Consensus 275 h~ 276 (299)
T KOG3081|consen 275 HP 276 (299)
T ss_pred ch
Confidence 64
No 218
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=54.04 E-value=56 Score=25.47 Aligned_cols=37 Identities=19% Similarity=0.068 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
+..+..+|..+...|+++.|+..+.++..+.|.....
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 3456777888999999999999999999999987544
No 219
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=53.92 E-value=52 Score=25.48 Aligned_cols=36 Identities=14% Similarity=-0.096 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
.....+|..+...|+++.|+..+.++..+.|.....
T Consensus 73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~ 108 (168)
T CHL00033 73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA 108 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 345566888899999999999999999999887544
No 220
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=53.42 E-value=33 Score=23.33 Aligned_cols=32 Identities=16% Similarity=0.032 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
..|..++..|...-..|++++|+..|..+...
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35667777888888999999999999887743
No 221
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=52.80 E-value=28 Score=27.23 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=36.8
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
.|.-+-.++.. .+.+++..|..++..+|+.++...+.+|..++..+
T Consensus 19 SP~~Li~MLye----g~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL 64 (132)
T COG1516 19 SPHKLILMLYE----GALKFLKRAKEAIEQEDIEEKNESIDKAIDIITEL 64 (132)
T ss_pred CHHHHHHHHHH----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 35555555554 68899999999999999999999999999776543
No 222
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.27 E-value=46 Score=28.08 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 35 ADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 35 n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
.+....=.+++|+.++..|+|+.|+++++.+...+...
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e 211 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE 211 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC
Confidence 34444556789999999999999999999998776654
No 223
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=51.08 E-value=26 Score=33.22 Aligned_cols=28 Identities=11% Similarity=-0.103 Sum_probs=21.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+..+...|++++|+..+.+|.+++|..+
T Consensus 460 G~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 460 GKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 4455667788888888888888888776
No 224
>PRK14574 hmsH outer membrane protein; Provisional
Probab=50.71 E-value=34 Score=34.44 Aligned_cols=28 Identities=11% Similarity=-0.003 Sum_probs=15.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
|..+...|.+..|+..+..+..++|...
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l~P~~~ 484 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESLAPRSL 484 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCccH
Confidence 5555555555555555555555555543
No 225
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=50.36 E-value=40 Score=25.67 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=35.5
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNP 70 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p 70 (201)
+|.-+-.++.. .+.+.+..|..++..||++.+...+.+|+.+.-
T Consensus 19 sp~~Li~mLyd----g~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~ 62 (124)
T TIGR00208 19 SPGELTLMLYN----GCLKFIRLAAQAIENDDIERKNENLIKAQNIIQ 62 (124)
T ss_pred CHHHHHHHHHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 55555555554 789999999999999999999999988886653
No 226
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.74 E-value=9.4 Score=37.12 Aligned_cols=20 Identities=60% Similarity=0.429 Sum_probs=7.8
Q ss_pred CCCCCCCCCCcccCCCCCCh
Q 037661 5 SSSSSSSSSSSLSSSPFNNP 24 (201)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~p 24 (201)
+||+||||++|+---|..+|
T Consensus 18 ~s~~~~ss~~s~~~ep~~~~ 37 (1103)
T KOG1420|consen 18 SSSSSSSSSSSSVHEPKMDA 37 (1103)
T ss_pred CCCCCcccccccccCCccCc
Confidence 33333333344433444433
No 227
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=49.61 E-value=49 Score=23.24 Aligned_cols=30 Identities=20% Similarity=0.061 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRAR 66 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~ 66 (201)
..|..+...|..+-..|++.+|+..|.++.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 356777778999999999999999888766
No 228
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=49.53 E-value=45 Score=24.14 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
..|...+..|+..+..|+|..|..++..+...
T Consensus 43 ~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 43 KEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45778888899999999999999999988865
No 229
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=49.45 E-value=46 Score=31.57 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhhhccCcchhcccc-----------CCCCCHHHHHHHHHHHHHh
Q 037661 77 SHFACYVVHKLAAEKKSWYAVLGIR-----------DHRAGVDVIKKRYEALVQL 120 (201)
Q Consensus 77 ~~l~~~~v~~~~~~~~d~Y~vLgv~-----------~~~as~~eIkkaYrkla~~ 120 (201)
.+..+.+|+ .....+--|+++|.. + ..+++|||+-|+++.+.
T Consensus 57 ~i~~AyEVL-sDp~kRaIYD~~G~qGL~t~gwEl~~r-~~tpeEIreE~Erl~r~ 109 (546)
T KOG0718|consen 57 RIQRAYEVL-SDPQKRAIYDNYGEQGLKTEGWELGFR-GKTPEEIREEYERLQRE 109 (546)
T ss_pred HHHHHHHHh-cChHHHHHHHHhhhccccccCceeecC-CCCHHHHHHHHHHHHHH
Confidence 444455565 444555566666632 5 88999999999776653
No 230
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=48.49 E-value=55 Score=29.47 Aligned_cols=39 Identities=13% Similarity=-0.015 Sum_probs=32.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV 83 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 83 (201)
.++.++..|+++.|+..++++....|....+..++..+.
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~ 197 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY 197 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 378889999999999999999999999987766665544
No 231
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.07 E-value=52 Score=23.34 Aligned_cols=35 Identities=20% Similarity=0.059 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+..++..|..+...|++++|+..+++|.++.....
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 45677789999999999999999999998766543
No 232
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=47.83 E-value=99 Score=21.95 Aligned_cols=46 Identities=13% Similarity=-0.013 Sum_probs=33.0
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHH
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLI 138 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i 138 (201)
+|.-.+.|+.+ .+|.+||+.+-.+.++++.=-..+.....+.|..-
T Consensus 3 RnI~~L~~feP-paT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~A 48 (78)
T PF10041_consen 3 RNIKTLRNFEP-PATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRA 48 (78)
T ss_pred cchhhhcCCCC-CCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHH
Confidence 45566778899 99999999999888888865444444445555443
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=47.72 E-value=54 Score=26.26 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=21.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
+...-..|++++|+..+.++..+.|....+
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSa 79 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASA 79 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHh
Confidence 455556788888888888888888766443
No 234
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=47.69 E-value=1.3e+02 Score=25.57 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCC
Q 037661 40 EASKHMAEELFKE-EKIDSALCVVDRARMKNP 70 (201)
Q Consensus 40 ~~~~~~A~~~l~~-~d~~~A~~~~~~a~~~~p 70 (201)
..+..+|+.+... |+++.|+..|++|..++.
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3344444444444 566666666666555544
No 235
>PLN02789 farnesyltranstransferase
Probab=47.67 E-value=34 Score=30.33 Aligned_cols=40 Identities=8% Similarity=-0.065 Sum_probs=29.6
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+||.|..++..| +-.....|+|++|+.++.++.+.+|...
T Consensus 137 ~dpkNy~AW~~R------------~w~l~~l~~~~eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 137 LDAKNYHAWSHR------------QWVLRTLGGWEDELEYCHQLLEEDVRNN 176 (320)
T ss_pred hCcccHHHHHHH------------HHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence 455555555555 5666677889999999999999888774
No 236
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.07 E-value=92 Score=24.65 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=36.6
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
||+..+.++.. -++.++.++..|++++....+-.|..++|....+-
T Consensus 73 d~~~~E~~Fmq--------qv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL 118 (143)
T KOG4056|consen 73 DAEEVEKFFMQ--------QVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLL 118 (143)
T ss_pred CHHHHHHHHHH--------HHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHH
Confidence 45555555544 67889999999999999999999999999876443
No 237
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=46.92 E-value=40 Score=23.51 Aligned_cols=33 Identities=15% Similarity=-0.006 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
.+|..++..|...-..|++++|..+|..+...+
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 356677777888889999999999998887543
No 238
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=46.71 E-value=57 Score=30.90 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=20.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+..++..|+++.|+..+.++..+.|...
T Consensus 200 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 227 (899)
T TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNP 227 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCH
Confidence 5566677777777777777777777654
No 239
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=46.53 E-value=53 Score=24.86 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
...+.+|..++..|++++|+..|..+....|..
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~ 81 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAPDP 81 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH
Confidence 556778999999999999999999999877554
No 240
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=46.51 E-value=41 Score=25.27 Aligned_cols=43 Identities=14% Similarity=0.089 Sum_probs=33.9
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
+|.-+-.++.. .+.+.++.|..++..||++.+...+.+|+.+.
T Consensus 17 sp~~Li~~Lyd----~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii 59 (122)
T PF02561_consen 17 SPHQLILMLYD----GAIEFLKQAKEAIEQGDIEEKNEALQKAQDII 59 (122)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44444444443 78999999999999999999999999988654
No 241
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=46.45 E-value=12 Score=37.20 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCC
Q 037661 104 RAGVDVIKKRYEALVQLFKPDRCSS 128 (201)
Q Consensus 104 ~as~~eIkkaYrkla~~~HPDk~~~ 128 (201)
+.++..|-+..-++...|.||....
T Consensus 1351 wsdpskipqevlriisdyypdapga 1375 (1463)
T PHA03308 1351 WSDPSKIPQEVLRIISDYYPDAPGA 1375 (1463)
T ss_pred cCCcccchHHHHHHHhhhCCCCcch
Confidence 4556677777777888888887543
No 242
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=46.24 E-value=94 Score=29.35 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=38.6
Q ss_pred cCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 17 SSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 17 ~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
++++..||.++++|..+ +..+++++...+|+-.+..|+.+-|..
T Consensus 324 eK~I~~~~r~~~alilK------------G~lL~~~~R~~~A~IaFR~Aq~Lap~r 367 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILK------------GRLLIALERHTQAVIAFRTAQMLAPYR 367 (564)
T ss_pred HHHhccCcccchHHHhc------------cHHHHhccchHHHHHHHHHHHhcchhh
Confidence 46788999999999999 888888999999998899999888765
No 243
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=44.28 E-value=74 Score=31.12 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=25.3
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
..+||.+.--+..- ...+.+.|..+.|+.++++|..++|..
T Consensus 516 ~~INP~nsvi~~~~------------g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 516 VEINPSNSVILCHI------------GRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred hcCCccchhHHhhh------------hHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 34666666555544 556666666666666666666666654
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.88 E-value=2.2e+02 Score=24.81 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
++-..|-.++..|||..|..-+..-...+|...
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~ 175 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNST 175 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc
Confidence 366679999999999999999999999999875
No 245
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=43.15 E-value=74 Score=27.32 Aligned_cols=30 Identities=27% Similarity=0.107 Sum_probs=22.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
+..++..|+++.|+..++++..+.|....+
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~ 150 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWA 150 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHH
Confidence 666777788888888888888877776433
No 246
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=42.94 E-value=32 Score=33.32 Aligned_cols=28 Identities=14% Similarity=-0.005 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
+-.....+.+.|++++|+.++.......
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~ 117 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGC 117 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 4445666778889999998888877543
No 247
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=42.54 E-value=59 Score=23.97 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 35 ADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 35 n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
+-.+|..+.-.|....+.|||++|...+..|....-.
T Consensus 13 ~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~~ 49 (99)
T TIGR00823 13 YAGDARSKALEALKAAKAGDFAKARALVEQAGMCLNE 49 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3456777778889999999999999999988865443
No 248
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=41.67 E-value=44 Score=17.66 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHhCCCchh
Q 037661 53 EKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 53 ~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
|+++.|+..++++...+|....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~ 22 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVE 22 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChH
Confidence 5788899999999999986543
No 249
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=41.56 E-value=75 Score=20.16 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhcc
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLL 157 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~ 157 (201)
.+.++...+..||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 12 ~~~~~~~~~~~~~~~~----~~~i~~~~~~~W~~l~~~~k~~y~~~a 54 (66)
T cd00084 12 SQEHRAEVKAENPGLS----VGEISKILGEMWKSLSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHHHCcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556677777888833 478899999999999987776665543
No 250
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=41.52 E-value=18 Score=17.10 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHcC
Q 037661 134 ANKLINEAWEVLS 146 (201)
Q Consensus 134 ~f~~i~~Ay~vLs 146 (201)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888764
No 251
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=41.48 E-value=47 Score=26.64 Aligned_cols=37 Identities=11% Similarity=-0.066 Sum_probs=24.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY 82 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 82 (201)
+..++..|+|.+|++.+.....--+.......|+..|
T Consensus 51 g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 51 GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 5667777888888888877776665555444444443
No 252
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=40.99 E-value=51 Score=28.83 Aligned_cols=28 Identities=11% Similarity=-0.116 Sum_probs=13.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+-.+.+.|.+..|+.++....+.+|+.+
T Consensus 222 GliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 222 GLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 4444444444444444444444444443
No 253
>PHA02053 hypothetical protein
Probab=40.83 E-value=1.5e+02 Score=22.13 Aligned_cols=86 Identities=16% Similarity=0.185 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCC-CHHHHHHHHHHHHHhhCCCCCCCchHHHH
Q 037661 56 DSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRA-GVDVIKKRYEALVQLFKPDRCSSVGADTA 134 (201)
Q Consensus 56 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~a-s~~eIkkaYrkla~~~HPDk~~~~~a~~~ 134 (201)
.+|.++.++...-....+...+++..+-++...-...| .++- ++ +..+..++||+.-..|.-+-.......-.
T Consensus 24 ~kak~iIe~Ya~k~~~~~ts~kllns~MilK~li~sGd-----dmP~-D~~ta~~F~kayR~~~VIysr~lGS~DsVmWn 97 (115)
T PHA02053 24 PKAKAIIEKYASKTKQQDTSNKLLNSLMILKLLIASGD-----DMPI-DANTATEFQKAYRSWGVIYSRSLGSYDSVMWN 97 (115)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCC-----CCCC-CCCCHHHHHHHHHhcCeeeecCCCchhHHHHH
Confidence 45666776655433333335555554444422122222 2344 55 88999999999998887777665543333
Q ss_pred HHHHH-HHHHHcCC
Q 037661 135 NKLIN-EAWEVLSD 147 (201)
Q Consensus 135 f~~i~-~Ay~vLsd 147 (201)
...|. ..|+||+.
T Consensus 98 LMHlDk~iw~vl~e 111 (115)
T PHA02053 98 LMHLDKLIWEVLSE 111 (115)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333 35677763
No 254
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=40.68 E-value=61 Score=31.38 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=15.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 48 ELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 48 ~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
.+.-.|+++.|+.++++|..+.|...-+..++.
T Consensus 498 iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 498 IYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 344444444444444444444444444444443
No 255
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.08 E-value=70 Score=24.88 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=34.5
Q ss_pred chhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcC
Q 037661 95 YAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLS 146 (201)
Q Consensus 95 Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLs 146 (201)
-.||+|.. ..+.++|.+.|..|-....+.+.... -.-..|-.|.+-|-
T Consensus 62 ~qILnV~~-~ln~eei~k~yehLFevNdkskGGSF---YLQSKVfRAkErld 109 (132)
T KOG3442|consen 62 QQILNVKE-PLNREEIEKRYEHLFEVNDKSKGGSF---YLQSKVFRAKERLD 109 (132)
T ss_pred hhHhCCCC-CCCHHHHHHHHHHHHhccCcccCcce---eehHHHHHHHHHHH
Confidence 57999999 99999999999999888866665442 22233445555554
No 256
>PLN03014 carbonic anhydrase
Probab=39.94 E-value=17 Score=32.92 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=5.2
Q ss_pred CCCCChhhHHH
Q 037661 19 SPFNNPEAREA 29 (201)
Q Consensus 19 ~~~~~p~~~~~ 29 (201)
.|.+.|.-.+.
T Consensus 67 ~~~~~~~~~~~ 77 (347)
T PLN03014 67 APIIAPYWSEE 77 (347)
T ss_pred CcccCchhHhh
Confidence 34455554444
No 257
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=39.66 E-value=68 Score=23.77 Aligned_cols=32 Identities=22% Similarity=0.048 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
-|..+++.|+.++..||.+.|--++.+...+.
T Consensus 37 sa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 37 SANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999888665
No 258
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=39.47 E-value=71 Score=23.79 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccC
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRD 102 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~ 102 (201)
-.+|..+.-.|..+.+.|||++|...+.+|....-.-..+.- .+-.. -+......+.+|=|+-
T Consensus 17 aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l~~AH~~qt---~liq~-Ea~g~~~~~slLlvHA 79 (104)
T PRK09591 17 SGNARTEVHEAFAAMREGNFDLAEQKLNQSNEELLEAHHAQT---KLLQE-YASGTEIKIEIIMVHA 79 (104)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HhCCCCCccceeehhH
Confidence 456777777788899999999999999998865443332321 11111 2233455677777764
No 259
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=39.43 E-value=72 Score=23.42 Aligned_cols=63 Identities=14% Similarity=0.037 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccC
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRD 102 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~ 102 (201)
-.+|..+.-.|....+.|||++|...+.++....-.-..+.- .+-.. -+...+..+.+|=|+-
T Consensus 12 aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l~~AH~~qt---~liq~-ea~g~~~~~slLlvHA 74 (97)
T cd00215 12 AGNARSKALEALKAAKEGDFAEAEELLEEANDSLNEAHHAQT---KLLQQ-EASGEKVEVSLLLVHA 74 (97)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HhcCCCCccceeehhH
Confidence 456677777788899999999999999998864433322221 11111 2233455677776653
No 260
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=38.19 E-value=1.1e+02 Score=23.10 Aligned_cols=31 Identities=13% Similarity=-0.062 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
..+.|..+-..|+.++|+.+|+++...-...
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~ 34 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSG 34 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Confidence 4556888888888888888888888754443
No 261
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=37.79 E-value=67 Score=17.11 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=18.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 037661 45 MAEELFKEEKIDSALCVVDRARM 67 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~ 67 (201)
+...+.+.|++++|.+++.+..+
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 35568889999999999988765
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=37.23 E-value=2.9e+02 Score=24.27 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=37.7
Q ss_pred HHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 30 LFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 30 ~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
..+.........+...|+.++..++++.+...+++...++|..+.+.
T Consensus 144 ~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~ 190 (280)
T COG3629 144 QRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAY 190 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHH
Confidence 33444445556777889999999999999999999999999887553
No 263
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=37.16 E-value=2.5e+02 Score=27.83 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=24.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
|+.+..+|+++.|.+++..|+.++-.+..|.
T Consensus 412 aRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 412 ARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred HHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 6777888888888888888888887776555
No 264
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=37.08 E-value=2.3e+02 Score=26.11 Aligned_cols=72 Identities=8% Similarity=-0.037 Sum_probs=53.1
Q ss_pred hHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----CchhHHhhHHHHHHHHHhhhccCcchhcc
Q 037661 26 AREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNP-----NHQGLNSHFACYVVHKLAAEKKSWYAVLG 99 (201)
Q Consensus 26 ~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p-----~~~~~~~~l~~~~v~~~~~~~~d~Y~vLg 99 (201)
-++.++.| |+.-.--+|..|..--..|||.+|+.-+..|.++.- .++.++.++.-++.. +..-...-|.++.
T Consensus 361 EFEdiM~R-NraiSSSAIsrAvsdASaGDy~~AiETllTAI~lIKqSrv~~DdRCrvLissL~dc-Lhgiesksys~g~ 437 (498)
T KOG4849|consen 361 EFEDIMTR-NRAISSSAISRAVSDASAGDYKGAIETLLTAIQLIKQSRVGHDDRCRVLISSLEDC-LHGIESKSYSLGN 437 (498)
T ss_pred HHHHHHhh-cchhhHHHHHHHhcccccccchhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH-Hhhhhcccccccc
Confidence 35666666 777778889999999999999999999999988754 345667777766655 3344445677766
No 265
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=36.95 E-value=1.7e+02 Score=22.09 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
....|..+..+...|++++|+..+.++..-+|..+
T Consensus 38 ~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 38 RRALIQLASTLRNLGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence 35667789999999999999999999999999843
No 266
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=36.52 E-value=88 Score=20.97 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=31.5
Q ss_pred HHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhcc
Q 037661 112 KRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLL 157 (201)
Q Consensus 112 kaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~ 157 (201)
+..|.....-||+.. ..+..+.|.+.|..|++.++...++..
T Consensus 14 ~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~~a 55 (72)
T cd01388 14 KRHRRKVLQEYPLKE----NRAISKILGDRWKALSNEEKQPYYEEA 55 (72)
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344566667788753 368899999999999998887766643
No 267
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=36.49 E-value=97 Score=19.80 Aligned_cols=40 Identities=18% Similarity=0.368 Sum_probs=29.6
Q ss_pred HHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhcc
Q 037661 114 YEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLL 157 (201)
Q Consensus 114 Yrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~ 157 (201)
.|.-.+.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 15 ~r~~~~~~~p~~~----~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 15 QRPKLKKENPDAS----VTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHCcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4555566788732 478999999999999988777666543
No 268
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=36.43 E-value=84 Score=22.95 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
-.+|..+.-.|....+.|||++|...+.++....
T Consensus 11 aG~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l 44 (96)
T PF02255_consen 11 AGDARSLAMEALKAAREGDFEEAEELLKEADEEL 44 (96)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3456677777888899999999999998887543
No 269
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.28 E-value=63 Score=24.43 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=16.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 037661 45 MAEELFKEEKIDSALCVVDRA 65 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a 65 (201)
.+..+++.|++++|+..|.+|
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHh
Confidence 477788888888888888776
No 270
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=36.08 E-value=36 Score=22.43 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=23.1
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCC
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRC 126 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~ 126 (201)
...-||+||+++. -.++-|..|-+ .++-||+..
T Consensus 9 QQnAFY~vl~~~n---LteeQrn~yI~-~lKddPs~s 41 (54)
T PF02216_consen 9 QQNAFYEVLHMPN---LTEEQRNGYIQ-SLKDDPSRS 41 (54)
T ss_dssp HHHHHHHHHCSTT---S-HHHHHHHHH-HHHH-GCCH
T ss_pred HHHHHHHHHcCCC---cCHHHHHhHHH-HHhhChHHH
Confidence 3346999999987 55667778876 567788875
No 271
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=36.01 E-value=3.5e+02 Score=24.81 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHh
Q 037661 132 DTANKLINEAWEVLSDPKRREAY 154 (201)
Q Consensus 132 ~~~f~~i~~Ay~vLsdp~kR~~Y 154 (201)
.+....+.++|..|++|..-..|
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHH
Confidence 46666777888888887654444
No 272
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=36.00 E-value=2.5e+02 Score=26.05 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccC-------------------
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRD------------------- 102 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~------------------- 102 (201)
.+-.|+..+..||+..|+.-+..++.+.|....+-++...+.+. ..+|-++|-+-+
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~-----~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~ 230 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIR-----LGAWQALLAILPKLRKAGLLSDEEAARLEQQ 230 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHH-----hccHHHHHHHHHHHHHccCCChHHHHHHHHH
Confidence 34457777888888888888888888888776655554433322 112222222211
Q ss_pred ----------CCCCHHHHHHHHHHHHHhh--CCCCCCC--------chHHHHHHHHHHHHHHcCChhHHHHhhccCCCCc
Q 037661 103 ----------HRAGVDVIKKRYEALVQLF--KPDRCSS--------VGADTANKLINEAWEVLSDPKRREAYDLLMCFDK 162 (201)
Q Consensus 103 ----------~~as~~eIkkaYrkla~~~--HPDk~~~--------~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~ 162 (201)
.....+.++..++.+..+. ||--... ..-+++++.|.+++.-.-||.....|++-...+.
T Consensus 231 a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~ 310 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDP 310 (400)
T ss_pred HHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCc
Confidence 0111222333343332222 1111000 0046788899999999999999999987665443
No 273
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=35.17 E-value=4.1e+02 Score=25.37 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=19.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
|+.++..|++++|...|......+|...
T Consensus 45 A~ll~kLg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 45 AELLLKLGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 6666777777777777777777776654
No 274
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=34.92 E-value=1.4e+02 Score=19.92 Aligned_cols=45 Identities=22% Similarity=0.236 Sum_probs=36.1
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCC
Q 037661 27 REALFSKLADKEAEASKHMAEELFK-EEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 27 ~~~~~~r~n~~ea~~~~~~A~~~l~-~~d~~~A~~~~~~a~~~~p~ 71 (201)
..|+++..+.+|-...+.+...... .++++.|++....+.-..|.
T Consensus 12 ~rAfRRp~~~~e~~~~~~~~~~~~~~g~~~~~a~~~~l~aiL~SP~ 57 (64)
T PF07637_consen 12 RRAFRRPLTDEEVDRYLALYDSARAQGEDFEEALKEALQAILCSPS 57 (64)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCcc
Confidence 4677777888888999999999888 57799999888887765553
No 275
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=34.88 E-value=53 Score=23.23 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=20.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh
Q 037661 46 AEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
++.....||+++|.+.-.+|+.+
T Consensus 44 v~~~~~~Gd~~~A~~aS~~Ak~~ 66 (82)
T PF04505_consen 44 VRSRYAAGDYEGARRASRKAKKW 66 (82)
T ss_pred hHHHHHCCCHHHHHHHHHHhHHH
Confidence 67889999999999998888855
No 276
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=34.79 E-value=96 Score=25.97 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHh
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGLNS 77 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~ 77 (201)
..|..++..|+++.|+..++++....|.+..+..
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~ 252 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLL 252 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHH
T ss_pred HHHHHhcccccccccccccccccccccccccccc
Confidence 4566777788888888888888888887764433
No 277
>PLN02789 farnesyltranstransferase
Probab=34.45 E-value=75 Score=28.16 Aligned_cols=41 Identities=15% Similarity=0.108 Sum_probs=28.7
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCc
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEE-KIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~-d~~~A~~~~~~a~~~~p~~ 72 (201)
..++|++..++..| +..+...| ++.+|+.++.++...+|..
T Consensus 64 I~lnP~~ytaW~~R------------~~iL~~L~~~l~eeL~~~~~~i~~npkn 105 (320)
T PLN02789 64 IRLNPGNYTVWHFR------------RLCLEALDADLEEELDFAEDVAEDNPKN 105 (320)
T ss_pred HHHCchhHHHHHHH------------HHHHHHcchhHHHHHHHHHHHHHHCCcc
Confidence 34577777777766 55555555 5788888888888888766
No 278
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=34.31 E-value=90 Score=31.13 Aligned_cols=47 Identities=11% Similarity=0.084 Sum_probs=37.9
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HHHhCCCchhHHhhHHH
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDR---ARMKNPNHQGLNSHFAC 81 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~---a~~~~p~~~~~~~~l~~ 81 (201)
.|+++.-++-. |.++++.|+|..|..|+.. .=.++|+.+.+..|+..
T Consensus 649 PPEn~RehVva------------AsKAm~~Gnw~~c~~fi~nn~KvW~Lfpn~d~V~~Ml~~ 698 (843)
T KOG1076|consen 649 PPENTREHVVA------------ASKAMQKGNWQKCFEFIVNNIKVWDLFPNADTVLDMLTE 698 (843)
T ss_pred CchhHHHHHHH------------HHHHHhcCCHHHHHHHHHhhhhHHHhcccHHHHHHHHHH
Confidence 57777666666 9999999999999998766 44688998888888764
No 279
>PRK15331 chaperone protein SicA; Provisional
Probab=33.87 E-value=2.5e+02 Score=22.78 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 35 ADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 35 n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
..++-+..-..|-..+..|++++|..++.-...++|....
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~ 72 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD 72 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH
Confidence 3344444555599999999999999999999998887644
No 280
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=33.62 E-value=23 Score=36.43 Aligned_cols=19 Identities=21% Similarity=0.115 Sum_probs=15.4
Q ss_pred HhcCCHHHHHHHHHHHHHh
Q 037661 50 FKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 50 l~~~d~~~A~~~~~~a~~~ 68 (201)
...||...|+..+..|..+
T Consensus 970 q~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 970 NVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred hcCCHHHHHHHHHHHHHhh
Confidence 4468999999999888875
No 281
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=33.46 E-value=1.4e+02 Score=22.62 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
.|..+++.||.-+|++..+......++...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~ 31 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES 31 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc
Confidence 488999999999999999999999988764
No 282
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=33.37 E-value=1.1e+02 Score=18.17 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHHHhCCC
Q 037661 42 SKHMAEELFKEEKIDSALCV--VDRARMKNPN 71 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~--~~~a~~~~p~ 71 (201)
+...|-.+...|++++|+.+ +.-+..+++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44558889999999999999 4477777654
No 283
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.31 E-value=1.2e+02 Score=27.58 Aligned_cols=45 Identities=11% Similarity=0.167 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCchhHHhhHHHHH
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMK--NPNHQGLNSHFACYV 83 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 83 (201)
...|+.+|+.++..+|.++|..+..++--+ +...+.+.-....|.
T Consensus 144 l~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ 190 (399)
T KOG1497|consen 144 LLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCY 190 (399)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHH
Confidence 367999999999999999999999997643 334444443334433
No 284
>PF10849 DUF2654: Protein of unknown function (DUF2654); InterPro: IPR022558 This entry is represented by Bacteriophage T4, a-gt.4; it is a family of uncharacterised viral proteins.
Probab=33.19 E-value=1.3e+02 Score=20.98 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 35 ADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 35 n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
|+-|-.|+...|+.++-.|++++-+=-..+.+.++--
T Consensus 12 N~rEI~RL~~HAe~al~~~Nk~~Y~YAI~KLR~i~kQ 48 (70)
T PF10849_consen 12 NRREIKRLKKHAEEALIENNKEGYVYAIKKLRDIYKQ 48 (70)
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHcC
Confidence 7889999999999999999999988777777766543
No 285
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=33.06 E-value=85 Score=16.92 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=18.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 037661 45 MAEELFKEEKIDSALCVVDRARM 67 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~ 67 (201)
+...+.+.|+++.|...+....+
T Consensus 7 ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 7 LLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678889999999988887664
No 286
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=32.33 E-value=96 Score=24.70 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHH
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVV 84 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v 84 (201)
+.=+|..+.+.++|+.+++.+....+..|+...+..+-..++.
T Consensus 74 lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied 116 (149)
T KOG3364|consen 74 LYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIED 116 (149)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 3446888999999999999999999999998877666655443
No 287
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=32.14 E-value=62 Score=28.25 Aligned_cols=41 Identities=20% Similarity=0.083 Sum_probs=32.1
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
-++|....-+..| |..+|+..+|+.+..+..+|.++.|+.-
T Consensus 38 ~~nP~~~~Y~tnr------------alchlk~~~~~~v~~dcrralql~~N~v 78 (284)
T KOG4642|consen 38 CINPTVASYYTNR------------ALCHLKLKHWEPVEEDCRRALQLDPNLV 78 (284)
T ss_pred hcCCCcchhhhhH------------HHHHHHhhhhhhhhhhHHHHHhcChHHH
Confidence 4566666666666 8888888888888888888888888763
No 288
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=31.91 E-value=1.2e+02 Score=20.59 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhc
Q 037661 110 IKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDL 156 (201)
Q Consensus 110 IkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~ 156 (201)
-.+.++..++.-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 12 f~~~~r~~~~~~~p~~~----~~eisk~~g~~Wk~ls~eeK~~y~~~ 54 (77)
T cd01389 12 YRQDKHAQLKTENPGLT----NNEISRIIGRMWRSESPEVKAYYKEL 54 (77)
T ss_pred HHHHHHHHHHHHCCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 34566777888899863 36888999999999998777665553
No 289
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=31.78 E-value=4.6e+02 Score=27.02 Aligned_cols=39 Identities=8% Similarity=-0.021 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661 43 KHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC 81 (201)
Q Consensus 43 ~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~ 81 (201)
..++..+...++++.|+..+..+...+|..-.+.-.+..
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~ 73 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI 73 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH
Confidence 334888889999999999999999999988655444443
No 290
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=31.64 E-value=1.1e+02 Score=23.33 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccC
Q 037661 35 ADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRD 102 (201)
Q Consensus 35 n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~ 102 (201)
+-.+|.-+.-.|....+.|||++|...+.+|....-.-..+.- .+-.. -+......+.+|=|+-
T Consensus 27 ~aG~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~AH~~qt---~Liq~-Ea~Ge~~~~slLlvHA 90 (115)
T PRK10454 27 NSGQARSLAYAALKQAKQGDFAAAKAMMDQSRMALNEAHLVQT---KLIEG-DQGEGKMKVSLVLVHA 90 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HhcCCCCCcceeeehH
Confidence 3456777777788899999999999999998865443332321 11111 2334455677777664
No 291
>PLN03014 carbonic anhydrase
Probab=31.17 E-value=3.3e+02 Score=24.73 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=14.2
Q ss_pred hcCCHHHHHHHHHHHHHhCCCch
Q 037661 51 KEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 51 ~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
..+-|++|+.-+.+...-.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~ 101 (347)
T PLN03014 79 GTEAYDEAIEALKKLLIEKEELK 101 (347)
T ss_pred chhhHHHHHHHHHhhcccccccc
Confidence 33457777777777665555553
No 292
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=31.08 E-value=1.5e+02 Score=29.65 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=59.3
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhcccc
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIR 101 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~ 101 (201)
.||...+.-..=+|..-+..-...|...++.++|.+|.++++.+.+++|-..+.--.+..+..
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL----------------- 530 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAAL----------------- 530 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHH-----------------
Confidence 356655555555555555444444555677899999999999999999987543211111111
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCC
Q 037661 102 DHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSD 147 (201)
Q Consensus 102 ~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd 147 (201)
.+...++.-.+-..+...-||+. +.|..+..||-++.+
T Consensus 531 --qlek~q~av~aF~rcvtL~Pd~~------eaWnNls~ayi~~~~ 568 (777)
T KOG1128|consen 531 --QLEKEQAAVKAFHRCVTLEPDNA------EAWNNLSTAYIRLKK 568 (777)
T ss_pred --HHhhhHHHHHHHHHHhhcCCCch------hhhhhhhHHHHHHhh
Confidence 12223344444445666677764 556666666655554
No 293
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=31.00 E-value=4.9e+02 Score=25.02 Aligned_cols=109 Identities=22% Similarity=0.201 Sum_probs=62.2
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh----HHhhHHHHHH-------HHHhh
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQG----LNSHFACYVV-------HKLAA 89 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~v-------~~~~~ 89 (201)
.+||..+.++-.= +..++.+.+-.+|+.-|++|..++|.+-. +-+....+.. .+.+-
T Consensus 358 kLNp~~~~aWTLm------------GHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 358 KLNPKYLSAWTLM------------GHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred hcCcchhHHHHHh------------hHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 4677777776666 77788888888888888888888887621 1122111110 00111
Q ss_pred hcc-----------CcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHh
Q 037661 90 EKK-----------SWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAY 154 (201)
Q Consensus 90 ~~~-----------d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~Y 154 (201)
..+ +.|+-|+ ..++-.+.|++..+.- |.+ ......|.++|+-|+|-+.=+.|
T Consensus 426 ~~kPnDsRlw~aLG~CY~kl~------~~~eAiKCykrai~~~--dte-----~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 426 ELKPNDSRLWVALGECYEKLN------RLEEAIKCYKRAILLG--DTE-----GSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred hcCCCchHHHHHHHHHHHHhc------cHHHHHHHHHHHHhcc--ccc-----hHHHHHHHHHHHHHHhHHHHHHH
Confidence 111 2233222 2455667777755533 332 35677788888888877665443
No 294
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=30.79 E-value=1.7e+02 Score=19.63 Aligned_cols=31 Identities=16% Similarity=0.023 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNP 70 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p 70 (201)
.+....|...-+.||...|++++.-+..+.+
T Consensus 9 ~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~ 39 (59)
T smart00685 9 EQYKQAALQAKRAGDEEKARRHLRIAKQFDD 39 (59)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhHHH
Confidence 3566678888899999999999988885443
No 295
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.56 E-value=1e+02 Score=29.63 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
-+.+.+++|.+.+..|||.=+...+.++.-.+|....++.+.+
T Consensus 451 GadrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~A 493 (655)
T COG2015 451 GADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQA 493 (655)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHH
Confidence 4689999999999999999999999999999999987776665
No 296
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=30.10 E-value=95 Score=27.47 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=16.3
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhc
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKE 52 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~ 52 (201)
+-+.|-+.++|+.=+. .++++..||+.
T Consensus 49 HGikPP~PEQYLTPLQ------QKEV~iRHLka 75 (305)
T PF15290_consen 49 HGIKPPNPEQYLTPLQ------QKEVCIRHLKA 75 (305)
T ss_pred CCCCCCCHHHhcChHH------HHHHHHHHHHH
Confidence 4457888888887643 33445555544
No 297
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.04 E-value=1.6e+02 Score=26.22 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=55.3
Q ss_pred Chh-hHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccc
Q 037661 23 NPE-AREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGI 100 (201)
Q Consensus 23 ~p~-~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv 100 (201)
.|+ -+..++.+.-..+-+..+..+...+..|++..|...+..+.+..|....+.-.+..|-+. .+....+-.||.-
T Consensus 117 qPesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~--~g~~e~A~~iL~~ 193 (304)
T COG3118 117 QPESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA--AGDVEAAQAILAA 193 (304)
T ss_pred CcHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH--cCChHHHHHHHHh
Confidence 344 677788887777778888999999999999999999999999999886565555554433 2333334445543
No 298
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=30.01 E-value=84 Score=16.45 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=18.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 037661 45 MAEELFKEEKIDSALCVVDRARM 67 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~ 67 (201)
+-..+.+.|++++|.+++.+..+
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHccchHHHHHHHHHHHhH
Confidence 35567888999999999887654
No 299
>PF12854 PPR_1: PPR repeat
Probab=29.92 E-value=84 Score=17.97 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=16.2
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 037661 45 MAEELFKEEKIDSALCVVDR 64 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~ 64 (201)
+...+.+.|++++|.+++.+
T Consensus 13 lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 13 LIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHCCCHHHHHHHHHh
Confidence 35668889999999998875
No 300
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=29.89 E-value=1.2e+02 Score=25.07 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=34.8
Q ss_pred CCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 19 SPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 19 ~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
...+||+...++.+=+|-=-.. +.-.....-...-|+.|..++++|....|..+--+..+.
T Consensus 61 AL~I~P~~hdAlw~lGnA~ts~-A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 61 ALKINPNKHDALWCLGNAYTSL-AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHH-TT-HHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHH-HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3456888888888775543321 222223334445589999999999999999865444443
No 301
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=29.88 E-value=59 Score=18.49 Aligned_cols=17 Identities=0% Similarity=0.014 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHhhC
Q 037661 106 GVDVIKKRYEALVQLFK 122 (201)
Q Consensus 106 s~~eIkkaYrkla~~~H 122 (201)
..++.|.+.|+.++.||
T Consensus 9 ~~~~~r~~lR~AALeYH 25 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYH 25 (28)
T ss_pred chHHHHHHHHHHHHHhc
Confidence 35778899999999998
No 302
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.86 E-value=4.7e+02 Score=25.73 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=24.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
.|..+++.|+|++|+..|+..........
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 58889999999999999999977666553
No 303
>PLN02673 quinolinate synthetase A
Probab=29.80 E-value=31 Score=34.08 Aligned_cols=35 Identities=9% Similarity=0.002 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHhCCCc
Q 037661 38 EAEASKHMAEELFKEEKIDSALC-VVDRARMKNPNH 72 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~-~~~~a~~~~p~~ 72 (201)
-..++-++.+.+....||+.=.+ +++-+.++-|-.
T Consensus 81 lP~kl~eIveeF~~l~dWEeRYr~LIeLGKkLPpLP 116 (724)
T PLN02673 81 VPCKLQRLIKEFKSLTEPVDRVKRLLHYASLLPPLP 116 (724)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCC
Confidence 34778888999999999955444 444455554444
No 304
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=29.66 E-value=71 Score=27.43 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 43 KHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 43 ~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
..++..++..|++++|+.++.++....|.
T Consensus 152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 152 HAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 44566788888999999999888888774
No 305
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.41 E-value=2.5e+02 Score=24.65 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
|+++.+...+++....|..|+..|-+|..++|+..
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~ 44 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA 44 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcc
Confidence 56777779999999999999999999999999873
No 306
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=29.31 E-value=82 Score=28.71 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 43 KHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 43 ~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
|-.+..++..|+|.+|++.++.+.+.+|..
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence 334677888888999999988888888865
No 307
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=28.98 E-value=1.2e+02 Score=27.43 Aligned_cols=41 Identities=17% Similarity=0.000 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHh
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNS 77 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~ 77 (201)
++|+...+.|...-+.|..-.|+.|+..|.++.|+.+.+-+
T Consensus 17 kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 17 KKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 46778888899999999999999999999999999876554
No 308
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=28.92 E-value=5.5e+02 Score=25.95 Aligned_cols=81 Identities=19% Similarity=0.089 Sum_probs=51.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCC
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDR 125 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk 125 (201)
+..+...|.+.+|+..|..|..++|....+...+..+ |..+|=++ --.++.+-+-++++-|+.
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~------------lle~G~~~-----la~~~~~L~dalr~dp~n 753 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAEL------------LLELGSPR-----LAEKRSLLSDALRLDPLN 753 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHH------------HHHhCCcc-----hHHHHHHHHHHHhhCCCC
Confidence 4556667777888888888888888765333222221 22334222 123444667778888876
Q ss_pred CCCchHHHHHHHHHHHHHHcCChh
Q 037661 126 CSSVGADTANKLINEAWEVLSDPK 149 (201)
Q Consensus 126 ~~~~~a~~~f~~i~~Ay~vLsdp~ 149 (201)
. +++..+.+.+..++|-.
T Consensus 754 ~------eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 754 H------EAWYYLGEVFKKLGDSK 771 (799)
T ss_pred H------HHHHHHHHHHHHccchH
Confidence 4 77888888888888765
No 309
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=28.61 E-value=1.4e+02 Score=26.37 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=30.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH---HH-HHhhhccCcchhccccC
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV---VH-KLAAEKKSWYAVLGIRD 102 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~---v~-~~~~~~~d~Y~vLgv~~ 102 (201)
+++.+.+.||.++-.+|+...-. .+.+.....++. +. --.+.-+..|.||.-+.
T Consensus 69 vCe~L~q~Gd~erL~rFlwsLp~----~~~~~~nEsvLkArA~vafH~gnf~eLY~iLE~h~ 126 (304)
T KOG0775|consen 69 VCESLQQGGDIERLGRFLWSLPV----CEELLKNESVLKARAVVAFHSGNFRELYHILENHK 126 (304)
T ss_pred HHHHHHhccCHHHHHHHHHcCch----HHHHhhhHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 48889999999999999865432 222222212111 11 11234446788887664
No 310
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=28.30 E-value=12 Score=25.37 Aligned_cols=31 Identities=23% Similarity=0.547 Sum_probs=21.5
Q ss_pred ccCcchhccccCCCCCHHHH-HHHHHHHHHhhCCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVI-KKRYEALVQLFKPDRC 126 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eI-kkaYrkla~~~HPDk~ 126 (201)
..+++++||+++ +++ ......+...+|||-.
T Consensus 5 s~~~~~i~G~~~-----~~~~~~~~~~~~~~ihpdD~ 36 (91)
T PF08447_consen 5 SDNFYEIFGYSP-----EEIGKPDFEEWLERIHPDDR 36 (91)
T ss_dssp -THHHHHHTS-H-----HHHTCBEHHHHHHHB-TTTH
T ss_pred eHHHHHHhCCCH-----HHhccCCHHHHHhhcCHHHH
Confidence 346889998865 666 6667778889999864
No 311
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=28.05 E-value=1.8e+02 Score=26.82 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 43 KHMAEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 43 ~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
...|+-++..++++.|+..+.+|..+.|..-.
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~ 269 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVELSPSEFE 269 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCchhHH
Confidence 33466688999999999999999999998743
No 312
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.89 E-value=1.1e+02 Score=26.59 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=33.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH 85 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~ 85 (201)
+++.++..|++.+|...+..+.+-+|..+.+...+-++.+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 47889999999999999999999999987776555544443
No 313
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=27.88 E-value=4e+02 Score=22.99 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=19.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
++..++..|++++|+..+.++..+.|...
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~ 214 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCV 214 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence 34445566777777777777777766653
No 314
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=27.72 E-value=67 Score=28.94 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=32.2
Q ss_pred HHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 112 KRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 112 kaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
+..|+...+-.||.+. .|+.|+|.+-|..|++.+||-.+|
T Consensus 75 q~~RRkma~qnP~mHN----SEISK~LG~~WK~Lse~EKrPFi~ 114 (331)
T KOG0527|consen 75 QGQRRKLAKQNPKMHN----SEISKRLGAEWKLLSEEEKRPFVD 114 (331)
T ss_pred HHHHHHHHHhCcchhh----HHHHHHHHHHHhhcCHhhhccHHH
Confidence 4445555555688764 599999999999999999999988
No 315
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.66 E-value=84 Score=31.23 Aligned_cols=46 Identities=22% Similarity=0.078 Sum_probs=34.5
Q ss_pred HHHHhhCHHHHHHHHHH---------------HHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 29 ALFSKLADKEAEASKHM---------------AEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 29 ~~~~r~n~~ea~~~~~~---------------A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
||...+..+||++|... +..+...|.++.|.++|++|...+|....
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa 389 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA 389 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh
Confidence 44556666777666543 55677889999999999999999997743
No 316
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=27.62 E-value=1.1e+02 Score=16.67 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHHHh
Q 037661 41 ASKHMAEELFKE----EKIDSALCVVDRARMK 68 (201)
Q Consensus 41 ~~~~~A~~~l~~----~d~~~A~~~~~~a~~~ 68 (201)
.+..+|..++.. .|...|+..+.+|...
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 455667666654 3889999999888754
No 317
>PF13041 PPR_2: PPR repeat family
Probab=27.25 E-value=1.5e+02 Score=17.93 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=24.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--CCCchhHHhhH
Q 037661 45 MAEELFKEEKIDSALCVVDRARMK--NPNHQGLNSHF 79 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~--~p~~~~~~~~l 79 (201)
+-..+.+.|++++|.+++++..+. .|+.....-++
T Consensus 9 li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 9 LISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 356688999999999999998854 34444333333
No 318
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.68 E-value=95 Score=27.11 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=29.3
Q ss_pred hhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 33 KLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 33 r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
-++|++|--+...|-.+++..|..+|++.++++..++-...
T Consensus 67 ~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~G 107 (288)
T KOG1586|consen 67 AGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMG 107 (288)
T ss_pred cCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhh
Confidence 34667776677777777777788888888887777776553
No 319
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=26.06 E-value=1.8e+02 Score=20.37 Aligned_cols=29 Identities=28% Similarity=0.210 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRAR 66 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~ 66 (201)
.|.+.++.|+..+..|+|..|.-.+..|.
T Consensus 7 ~A~~~l~~A~~~~~~~~~~~a~~~a~~a~ 35 (118)
T PF05168_consen 7 KAEEDLKAAEILLEEGDYNWAVFHAYQAV 35 (118)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 48889999999999999999888776665
No 320
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=25.75 E-value=2.6e+02 Score=25.27 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
..|..++..|.+.+|+...++++.++|-.+.....+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~l 319 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGL 319 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHH
Confidence 457889999999999999999999999886655443
No 321
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=25.24 E-value=4.2e+02 Score=22.43 Aligned_cols=15 Identities=13% Similarity=0.390 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhhC
Q 037661 108 DVIKKRYEALVQLFK 122 (201)
Q Consensus 108 ~eIkkaYrkla~~~H 122 (201)
++--..|.+.+-.+-
T Consensus 132 e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 132 EKAIEYYQKAAELYE 146 (282)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 322
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=24.48 E-value=1.6e+02 Score=27.61 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=35.7
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
+.|||.+..+.. |+..+..|+|..|+.-.+.+.++.|... +.-++.
T Consensus 324 lk~nnaes~~~v------------a~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlA 369 (531)
T COG3898 324 LKPNNAESSLAV------------AEAALDAGEFSAARAKAEAAAREAPRES-AYLLLA 369 (531)
T ss_pred cCccchHHHHHH------------HHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHH
Confidence 455555555555 9999999999999999999999999864 444444
No 323
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=24.40 E-value=2.5e+02 Score=28.56 Aligned_cols=22 Identities=32% Similarity=0.209 Sum_probs=17.8
Q ss_pred CCCcccCCCCCChhhHHHHHHh
Q 037661 12 SSSSLSSSPFNNPEAREALFSK 33 (201)
Q Consensus 12 ~~~~~~~~~~~~p~~~~~~~~r 33 (201)
.|.+|+.....||++++++..-
T Consensus 489 aa~~L~~Ai~VNP~d~~~~a~a 510 (854)
T PLN02205 489 CSPSLSGAIRVNPWNIDAVADA 510 (854)
T ss_pred hhHHhCcCeEECCCCHHHHHHH
Confidence 3556777888999999988877
No 324
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.37 E-value=1.3e+02 Score=30.31 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=34.0
Q ss_pred hHHHHHHhhCHHHHHHHH-------HHHHHHHhcCCHHHHHHHHHHHH
Q 037661 26 AREALFSKLADKEAEASK-------HMAEELFKEEKIDSALCVVDRAR 66 (201)
Q Consensus 26 ~~~~~~~r~n~~ea~~~~-------~~A~~~l~~~d~~~A~~~~~~a~ 66 (201)
.+++++.+.|++||.+.+ +....+++.|++.+|...+-+.+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~l~ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGGLQEKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCChHHHHHHHHHhccHHHHHHHHHHhc
Confidence 688999999999998876 47788999999999987775544
No 325
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=24.26 E-value=98 Score=29.45 Aligned_cols=32 Identities=16% Similarity=0.328 Sum_probs=28.1
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRAR 66 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~ 66 (201)
...++.+++.| |+.+|..||++.|++.++...
T Consensus 519 ~~~d~~~ilar------------ae~~l~~gdL~~A~~~~~~L~ 550 (582)
T PF09731_consen 519 EGDDVESILAR------------AEYYLERGDLDKAARELNQLK 550 (582)
T ss_pred CCCCHHHHHHH------------HHHHHHCCCHHHHHHHHHhCc
Confidence 56778888888 999999999999999998744
No 326
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=24.25 E-value=1.2e+02 Score=27.13 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
.+++++.||+++|++++++|.++--..
T Consensus 264 I~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 264 IKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 667889999999999999999886554
No 327
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=24.19 E-value=2e+02 Score=29.41 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
...+..|...+..|+++.|.+.+..+.+.+|...
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~ 173 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP 173 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch
Confidence 3444447777777777777777777777777653
No 328
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=24.18 E-value=1e+02 Score=26.42 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=44.8
Q ss_pred CcccCCCCCChhhHHHHHHh--hCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 14 SSLSSSPFNNPEAREALFSK--LADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 14 ~~~~~~~~~~p~~~~~~~~r--~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
+.++.+++-||+.-+.++.. .-++++.+...+|..+++.|++..|.-++-.|.-+...
T Consensus 87 ~~~~~~HFydp~~~~~yL~~~~~A~~~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy~~D 146 (241)
T smart00770 87 YDLSQDHFYDPDTGKNYLPGFSNAKDTGRKYFKLALNEWKKGNYKKAFFYLGRACHYLGD 146 (241)
T ss_pred cccccccccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 33457899999877773322 22566789999999999999999999999998876543
No 329
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=24.09 E-value=1.5e+02 Score=23.39 Aligned_cols=33 Identities=18% Similarity=0.046 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
|.+-+..|+..|..|+.++|+..+.+|....-.
T Consensus 2 A~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~ 34 (155)
T PF10938_consen 2 AMRDIQKARLALFQGDTDEAKKLLEDAQGKLDA 34 (155)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 556678899999999999999999999865543
No 330
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=23.91 E-value=1.9e+02 Score=20.81 Aligned_cols=52 Identities=17% Similarity=0.360 Sum_probs=34.5
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccC
Q 037661 99 GIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLM 158 (201)
Q Consensus 99 gv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~ 158 (201)
|+++.+....+|-+.++.++..+++. ..+.+..|.+.| +.||.-+..||...
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~------~~~~~~~l~~~y--~~~~~~~~~~~~~~ 102 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG------DPELLRGLAQMY--VEDPRFAAMYDKKF 102 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS---------HHHHHHHHHHT--TSTHHHHHHHG-GG
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHH--HcCHHHHhhccccC
Confidence 55651333456777888888888771 267888999988 88999999998433
No 331
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=23.70 E-value=2e+02 Score=27.38 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=34.4
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
..|+|.+.+..+ ++.++..++..+|...+.++..++|...-+
T Consensus 335 ~~P~N~~~~~~~------------~~i~~~~nk~~~A~e~~~kal~l~P~~~~l 376 (484)
T COG4783 335 AQPDNPYYLELA------------GDILLEANKAKEAIERLKKALALDPNSPLL 376 (484)
T ss_pred hCCCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhcCCCccHH
Confidence 467888888888 888888899999999999988888886433
No 332
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=23.65 E-value=3.4e+02 Score=27.78 Aligned_cols=38 Identities=26% Similarity=0.227 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 35 ADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 35 n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
|+..-+-|+..|+...+.|++..|+-.|.+|.++.|..
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN 240 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence 33333445555666777777777777777777777765
No 333
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=23.24 E-value=1.3e+02 Score=30.22 Aligned_cols=27 Identities=15% Similarity=-0.021 Sum_probs=13.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
++.+.+.||.+.|..+|..|.++.++.
T Consensus 761 G~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHccchHHHHHHHHHHHhhccCC
Confidence 444445555555555555544444433
No 334
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.19 E-value=2.7e+02 Score=24.88 Aligned_cols=43 Identities=23% Similarity=0.175 Sum_probs=29.2
Q ss_pred CCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 18 SSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 18 ~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
.++..||.+..+.-.+ |.+.+=.|+...|++-++.+....|..
T Consensus 277 ~i~~~D~~~~~a~NnK------------ALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 277 EILRMDPRNAVANNNK------------ALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hccccCCCchhhhchH------------HHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3455666666666666 666777777777777777777777765
No 335
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=23.15 E-value=1.8e+02 Score=20.83 Aligned_cols=27 Identities=15% Similarity=0.042 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRAR 66 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~ 66 (201)
++...+|..++..||...|..+++.|-
T Consensus 40 EKY~~LArDA~ssGDrV~aEny~QHAe 66 (80)
T PF13763_consen 40 EKYNQLARDAQSSGDRVLAENYLQHAE 66 (80)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 679999999999999999999998876
No 336
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.02 E-value=2.5e+02 Score=24.75 Aligned_cols=45 Identities=18% Similarity=0.079 Sum_probs=38.0
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 29 ALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 29 ~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
.+..-+..+-|--+++.|-+.+..-+.+.|+.+|.++..+....+
T Consensus 100 lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d 144 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD 144 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Confidence 455567778888899999999999999999999999998876553
No 337
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=23.00 E-value=2.9e+02 Score=26.38 Aligned_cols=28 Identities=21% Similarity=0.088 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
.+|+.++.+|.|.+|..++.+|..+...
T Consensus 372 nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 372 NLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 4788999999999999999999987643
No 338
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=22.97 E-value=2.7e+02 Score=22.45 Aligned_cols=29 Identities=17% Similarity=0.144 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
..++.....+|..+||+.|...+.+.+=+
T Consensus 128 ~~~~~~l~~~~~~~d~~~A~~~~~rL~y~ 156 (173)
T PRK01773 128 QAILTELSTALNSQQWQQASQINDRLRFI 156 (173)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34444455667788888888777766633
No 339
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=22.97 E-value=2.9e+02 Score=26.23 Aligned_cols=42 Identities=10% Similarity=0.053 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 38 EAEASKHMAEELFKEEK---IDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d---~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
+|..|.-.|..++..++ +..|+.++++|..++|+...+...+
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~l 382 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEK 382 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 55556666888887766 8899999999999999985444443
No 340
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=22.43 E-value=2.3e+02 Score=27.31 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccC
Q 037661 39 AEASKHMAEELFKEEK-IDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRD 102 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~ 102 (201)
+.=++..|.-.+.-+. ++.|+..+.++.+.+|+.+.+..-.-.++.. -..+..+--++||...
T Consensus 139 ~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~-~~~Kl~~rr~~~g~~~ 202 (568)
T KOG2396|consen 139 PDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELM-YAEKLRNRREELGLDS 202 (568)
T ss_pred chhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHH-HHHHHHHHHHHhcccc
Confidence 3344555888777777 9999999999999999998765433333322 1223334456677664
No 341
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.34 E-value=3.7e+02 Score=26.44 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------chhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHH
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPN--------HQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKK 112 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~--------~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkk 112 (201)
.+...|-.++..|+|..|++.+++|.+++-. .+++..-+..+.+. + .|-+.-+.. .+|-..
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ-l------ayVlQ~~Gq----t~ea~~ 245 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ-L------AYVLQLQGQ----TAEASS 245 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH-H------HHHHHHhcc----hHHHHH
Confidence 3444499999999999999999999655432 24455555555544 1 232222222 334556
Q ss_pred HHHHHHHhhCCCC
Q 037661 113 RYEALVQLFKPDR 125 (201)
Q Consensus 113 aYrkla~~~HPDk 125 (201)
-|..+....|+|-
T Consensus 246 iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 246 IYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHhcCCCc
Confidence 6888888888887
No 342
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=22.13 E-value=1.7e+02 Score=26.42 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=39.1
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
.||+.+-.++ +-+.=....++.+++.+.+.||...|..++++|.-.
T Consensus 24 ~Dp~~l~~ll-~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~ 69 (360)
T PF04910_consen 24 HDPNALINLL-QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA 69 (360)
T ss_pred cCHHHHHHHH-HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3888888888 447667788999999999999999999999998643
No 343
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=22.04 E-value=4e+02 Score=26.86 Aligned_cols=107 Identities=17% Similarity=0.117 Sum_probs=53.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHH---------------HHHhhhccCcchhccccCCCCCHHHH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVV---------------HKLAAEKKSWYAVLGIRDHRAGVDVI 110 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v---------------~~~~~~~~d~Y~vLgv~~~~as~~eI 110 (201)
|..+...||..+|+..+..|...+|..+.|--..-.++. ...++..+=||+--.+.+ -.+.-+=
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er-~ld~~ee 669 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLER-YLDNVEE 669 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHH-HhhhHHH
Confidence 445556677777777777777777776544321111110 001222334454444443 1111111
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCCh-hHHHHhhccCC
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDP-KRREAYDLLMC 159 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp-~kR~~YD~~~~ 159 (201)
-.++-.-+++.-||.. +.|..+.+.|+-..+- ..|..|+++..
T Consensus 670 A~rllEe~lk~fp~f~------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFH------KLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHHHHhCCchH------HHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 1222355677777764 4555555555554443 34777877664
No 344
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=21.94 E-value=1.6e+02 Score=26.88 Aligned_cols=40 Identities=20% Similarity=0.080 Sum_probs=32.8
Q ss_pred CCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 037661 19 SPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNP 70 (201)
Q Consensus 19 ~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p 70 (201)
+...|+|++.+++.+ --..+-.-+|+.|+.++.+.+.+-.
T Consensus 159 ~~~~d~n~lsalwGK------------lASEIL~qnWd~A~edL~rLre~ID 198 (432)
T KOG2758|consen 159 VSDPDRNYLSALWGK------------LASEILTQNWDGALEDLTRLREYID 198 (432)
T ss_pred cCCcchhhHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 456799999999999 5555667899999999999987644
No 345
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=21.51 E-value=1.8e+02 Score=27.82 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=36.3
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 28 EALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 28 ~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
+..+...+..-|.-++.+|..+...|+|++|...+.+|..+.-.
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 34445566777788899999999999999999999999987654
No 346
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=21.38 E-value=85 Score=28.67 Aligned_cols=53 Identities=21% Similarity=0.082 Sum_probs=34.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH-HHhhhccCcchhc
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH-KLAAEKKSWYAVL 98 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~-~~~~~~~d~Y~vL 98 (201)
|-+.+-.|+|..|+.++.+|..+.|+.-...-.-+.|... .......||.+-+
T Consensus 126 AAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 126 AAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 7778888999999999999999999874333222222221 1223444666543
No 347
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=21.02 E-value=3.2e+02 Score=20.91 Aligned_cols=30 Identities=20% Similarity=0.070 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
|.+-++.|...+..|+|+-|.-..++|.++
T Consensus 13 A~~~l~~A~~~le~G~y~~a~f~aqQAvel 42 (132)
T COG2250 13 AERDLKLAKRDLELGDYDLACFHAQQAVEL 42 (132)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 788888899999999999988877776643
No 348
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=20.92 E-value=2.8e+02 Score=26.59 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=13.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
++.+.+.+..++|+..|.+|.....+
T Consensus 439 G~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcccc
Confidence 55555555555555555555544444
No 349
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=20.54 E-value=2.3e+02 Score=23.72 Aligned_cols=51 Identities=6% Similarity=0.075 Sum_probs=41.9
Q ss_pred CCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 18 SSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 18 ~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
.+..-||..+...+...++---.++++.+.++|+...+..|...+++-..+
T Consensus 144 L~Gi~dp~~v~~~~~~~~~~re~eaiRlcLKHlRq~~y~~aFesLqk~t~v 194 (199)
T PF06588_consen 144 LSGIDDPDIVQPCLQWYNKYREKEAIRLCLKHLRQRGYLEAFESLQKQTGV 194 (199)
T ss_pred EeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHcCC
Confidence 455668999988888877777788999999999999999998888775543
No 350
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=20.22 E-value=2.3e+02 Score=21.01 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHH
Q 037661 39 AEASKHMAEELFKEEKIDS-ALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEAL 117 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~-A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkl 117 (201)
..+++..+...+...-+++ +-+.+-++.........+.+....+... +++-||+.| ..+++.-|+++
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~--------l~~elg~~P----s~~~~~l~~~i 145 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR--------LREELGIEP----SPETRALYREI 145 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------HHHHHS--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH--------HHHHhCcCc----CHHHHHHHHHh
Confidence 3455555566555555544 3334444444444443333333333222 355677776 33455555543
No 351
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=20.20 E-value=1.5e+02 Score=27.36 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
.+.++.+..+|....+.|+.++|+.++..|....|.-
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 3344455555999999999999999999999998865
No 352
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=20.12 E-value=3.1e+02 Score=21.80 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=9.9
Q ss_pred CCCChhhHHHHHHh
Q 037661 20 PFNNPEAREALFSK 33 (201)
Q Consensus 20 ~~~~p~~~~~~~~r 33 (201)
|.+||+-+..|...
T Consensus 47 P~id~~~L~~LE~~ 60 (149)
T PF10157_consen 47 PPIDPAVLHDLERD 60 (149)
T ss_pred CcccHHHHHHHHHH
Confidence 55678877777666
No 353
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=20.09 E-value=3.1e+02 Score=27.22 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHH--HhhhccCcchhccccC
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHK--LAAEKKSWYAVLGIRD 102 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~--~~~~~~d~Y~vLgv~~ 102 (201)
|...+.......+|++|++.|..|..+.|+...|-+=++-+++.. ..+-..+++.+|.+.+
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 344455566778899999999999999999876655555444331 1112225566666554
Done!