Query 037661
Match_columns 201
No_of_seqs 235 out of 1703
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 04:38:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hdj_A Human HSP40, HDJ-1; mol 99.9 4.1E-22 1.4E-26 140.1 8.3 71 92-163 3-73 (77)
2 2ctp_A DNAJ homolog subfamily 99.9 4.9E-22 1.7E-26 140.1 7.3 71 90-161 5-75 (78)
3 2ctr_A DNAJ homolog subfamily 99.9 6.3E-22 2.2E-26 142.8 6.1 72 90-162 5-76 (88)
4 2cug_A Mkiaa0962 protein; DNAJ 99.8 1.4E-21 4.8E-26 141.0 7.2 71 90-161 15-85 (88)
5 2dn9_A DNAJ homolog subfamily 99.8 1.7E-21 5.7E-26 137.6 7.4 71 90-161 5-76 (79)
6 2ej7_A HCG3 gene; HCG3 protein 99.8 3.5E-21 1.2E-25 136.8 7.7 70 91-161 8-79 (82)
7 2och_A Hypothetical protein DN 99.8 3.9E-21 1.3E-25 133.9 7.4 67 90-159 6-72 (73)
8 2yua_A Williams-beuren syndrom 99.8 3.2E-21 1.1E-25 142.0 7.3 75 90-165 15-90 (99)
9 2dmx_A DNAJ homolog subfamily 99.8 5E-21 1.7E-25 139.0 7.1 74 90-164 7-82 (92)
10 1wjz_A 1700030A21RIK protein; 99.8 4E-21 1.4E-25 139.7 5.9 70 90-160 14-90 (94)
11 2ctq_A DNAJ homolog subfamily 99.8 8.4E-21 2.9E-25 142.8 5.7 72 90-162 18-90 (112)
12 2o37_A Protein SIS1; HSP40, J- 99.8 8.4E-21 2.9E-25 138.0 5.5 70 90-162 6-75 (92)
13 2lgw_A DNAJ homolog subfamily 99.8 1.2E-20 3.9E-25 139.3 5.9 71 92-163 2-74 (99)
14 1bq0_A DNAJ, HSP40; chaperone, 99.8 9.8E-21 3.4E-25 140.3 5.3 73 91-164 2-75 (103)
15 2ctw_A DNAJ homolog subfamily 99.8 4.8E-20 1.7E-24 138.0 7.2 74 89-163 14-88 (109)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 4.9E-20 1.7E-24 137.7 4.4 71 89-160 12-87 (109)
17 2ys8_A RAB-related GTP-binding 99.8 1.8E-19 6.3E-24 130.5 5.6 62 90-152 25-86 (90)
18 3apq_A DNAJ homolog subfamily 99.8 3.4E-19 1.2E-23 145.1 7.6 71 92-163 2-73 (210)
19 2l6l_A DNAJ homolog subfamily 99.8 6.1E-19 2.1E-23 139.3 5.7 69 90-159 8-83 (155)
20 3hho_A CO-chaperone protein HS 99.7 2.9E-18 1E-22 138.3 5.8 68 91-159 3-78 (174)
21 2y4t_A DNAJ homolog subfamily 99.7 3.1E-17 1.1E-21 142.2 12.1 115 42-157 332-450 (450)
22 1gh6_A Large T antigen; tumor 99.7 4.7E-19 1.6E-23 133.9 0.3 67 90-160 6-74 (114)
23 3lz8_A Putative chaperone DNAJ 99.7 4.6E-19 1.6E-23 155.8 0.0 69 90-159 26-94 (329)
24 1fpo_A HSC20, chaperone protei 99.7 5.7E-18 2E-22 136.2 5.4 66 93-159 2-75 (171)
25 1n4c_A Auxilin; four helix bun 99.7 1.6E-18 5.5E-23 140.6 1.6 79 73-154 100-182 (182)
26 1faf_A Large T antigen; J doma 99.7 1E-17 3.5E-22 118.6 4.3 60 92-155 11-72 (79)
27 2pf4_E Small T antigen; PP2A, 99.7 2.1E-18 7.2E-23 139.1 -0.3 66 90-159 9-76 (174)
28 3bvo_A CO-chaperone protein HS 99.7 2.1E-17 7.3E-22 136.7 5.8 69 90-159 41-117 (207)
29 2qwo_B Putative tyrosine-prote 99.7 6.5E-18 2.2E-22 123.1 2.3 72 73-147 16-91 (92)
30 3ag7_A Putative uncharacterize 99.7 1.2E-17 4.1E-22 124.7 3.1 81 65-149 15-104 (106)
31 1iur_A KIAA0730 protein; DNAJ 99.6 2.9E-17 9.8E-22 118.7 2.2 59 92-151 16-76 (88)
32 3uo3_A J-type CO-chaperone JAC 99.6 1.8E-16 6.2E-21 128.6 3.3 68 89-158 8-81 (181)
33 3apo_A DNAJ homolog subfamily 99.6 1.5E-16 5.1E-21 151.8 2.6 75 89-164 18-93 (780)
34 2guz_A Mitochondrial import in 99.6 7.2E-16 2.4E-20 106.9 2.6 57 92-151 14-70 (71)
35 2guz_B Mitochondrial import in 98.8 3.2E-09 1.1E-13 72.2 4.8 50 94-147 6-58 (65)
36 2pzi_A Probable serine/threoni 97.6 6.8E-05 2.3E-09 70.3 6.6 50 87-144 624-675 (681)
37 4gco_A Protein STI-1; structur 97.1 0.018 6.2E-07 41.7 13.5 49 20-80 6-54 (126)
38 3gyz_A Chaperone protein IPGC; 96.6 0.075 2.6E-06 40.2 13.6 54 15-80 24-77 (151)
39 4gco_A Protein STI-1; structur 96.4 0.0059 2E-07 44.4 5.9 81 21-116 41-123 (126)
40 3rkv_A Putative peptidylprolyl 96.2 0.011 3.8E-07 43.8 6.7 42 23-76 59-100 (162)
41 2xcb_A PCRH, regulatory protei 96.0 0.28 9.7E-06 35.3 13.8 53 15-79 6-58 (142)
42 4gcn_A Protein STI-1; structur 95.8 0.22 7.4E-06 35.7 11.8 44 36-79 5-48 (127)
43 2ho1_A Type 4 fimbrial biogene 95.7 0.12 4E-06 40.2 10.9 47 18-76 27-74 (252)
44 3upv_A Heat shock protein STI1 95.7 0.11 3.6E-06 36.5 9.5 39 42-80 7-45 (126)
45 2vgx_A Chaperone SYCD; alterna 95.5 0.51 1.8E-05 34.7 13.5 52 16-79 10-61 (148)
46 4ga2_A E3 SUMO-protein ligase 95.3 0.11 3.8E-06 38.4 9.0 51 20-82 24-74 (150)
47 4ga2_A E3 SUMO-protein ligase 95.2 0.4 1.4E-05 35.2 11.7 43 34-76 60-102 (150)
48 2l6j_A TPR repeat-containing p 95.1 0.44 1.5E-05 31.8 11.3 39 38-76 3-41 (111)
49 3ma5_A Tetratricopeptide repea 95.1 0.055 1.9E-06 37.2 6.1 47 22-80 2-48 (100)
50 3gyz_A Chaperone protein IPGC; 95.0 0.16 5.6E-06 38.3 9.2 48 22-81 65-112 (151)
51 3sz7_A HSC70 cochaperone (SGT) 95.0 0.72 2.4E-05 33.7 12.8 43 38-80 10-52 (164)
52 3upv_A Heat shock protein STI1 94.9 0.58 2E-05 32.5 13.3 91 36-145 35-125 (126)
53 3sz7_A HSC70 cochaperone (SGT) 94.8 0.071 2.4E-06 39.4 6.5 34 43-76 49-82 (164)
54 3bee_A Putative YFRE protein; 94.6 0.06 2E-06 37.7 5.3 35 46-80 13-50 (93)
55 2y4t_A DNAJ homolog subfamily 94.6 0.69 2.4E-05 38.9 12.9 57 8-76 7-63 (450)
56 2lni_A Stress-induced-phosphop 94.5 0.12 3.9E-06 35.7 6.7 49 15-75 4-52 (133)
57 2hr2_A Hypothetical protein; a 94.3 0.04 1.4E-06 43.1 4.1 50 21-82 92-145 (159)
58 1hxi_A PEX5, peroxisome target 94.0 0.14 4.9E-06 36.5 6.4 34 46-79 24-57 (121)
59 1na3_A Designed protein CTPR2; 94.0 0.23 7.8E-06 32.1 7.0 31 46-76 16-46 (91)
60 2kck_A TPR repeat; tetratricop 93.8 0.88 3E-05 29.8 9.9 41 23-75 2-42 (112)
61 3k9i_A BH0479 protein; putativ 93.8 0.15 5E-06 35.6 6.0 47 23-81 23-69 (117)
62 2kc7_A BFR218_protein; tetratr 93.8 0.23 7.8E-06 33.1 6.8 31 44-74 5-35 (99)
63 2if4_A ATFKBP42; FKBP-like, al 93.7 0.03 1E-06 47.6 2.5 36 46-81 271-306 (338)
64 3mkr_A Coatomer subunit epsilo 93.7 0.41 1.4E-05 39.5 9.5 31 45-75 206-236 (291)
65 2vgx_A Chaperone SYCD; alterna 93.5 0.11 3.8E-06 38.4 5.2 86 22-119 50-137 (148)
66 2dba_A Smooth muscle cell asso 93.4 0.2 6.7E-06 35.2 6.2 81 22-117 57-142 (148)
67 3rkv_A Putative peptidylprolyl 93.4 0.2 6.8E-06 36.8 6.4 41 45-85 103-144 (162)
68 2kat_A Uncharacterized protein 93.4 0.22 7.6E-06 34.3 6.4 46 22-79 14-59 (115)
69 2fbn_A 70 kDa peptidylprolyl i 93.2 0.29 9.8E-06 37.2 7.4 27 46-72 95-121 (198)
70 3q49_B STIP1 homology and U bo 93.2 1.4 4.9E-05 30.4 12.6 39 42-80 12-50 (137)
71 3vtx_A MAMA; tetratricopeptide 93.2 1.8 6.3E-05 31.7 12.5 27 46-72 12-38 (184)
72 2xcb_A PCRH, regulatory protei 93.2 0.23 8E-06 35.8 6.4 36 44-79 57-92 (142)
73 2l6j_A TPR repeat-containing p 93.1 0.3 1E-05 32.7 6.5 31 42-72 41-71 (111)
74 3k9i_A BH0479 protein; putativ 93.0 0.24 8.2E-06 34.5 6.0 41 45-85 67-107 (117)
75 2xev_A YBGF; tetratricopeptide 92.8 0.38 1.3E-05 33.1 7.0 27 46-72 46-72 (129)
76 1ihg_A Cyclophilin 40; ppiase 92.7 0.26 8.9E-06 42.5 7.1 41 22-74 268-308 (370)
77 3urz_A Uncharacterized protein 92.7 0.2 6.8E-06 38.8 5.8 35 46-80 95-129 (208)
78 1elw_A TPR1-domain of HOP; HOP 92.7 0.35 1.2E-05 32.1 6.4 47 22-80 33-79 (118)
79 3ieg_A DNAJ homolog subfamily 92.6 0.35 1.2E-05 38.8 7.4 30 46-75 279-308 (359)
80 1p5q_A FKBP52, FK506-binding p 92.6 0.22 7.5E-06 42.0 6.4 31 46-76 203-233 (336)
81 4gcn_A Protein STI-1; structur 92.6 0.081 2.8E-06 38.1 3.1 41 22-74 37-77 (127)
82 2kc7_A BFR218_protein; tetratr 92.3 0.88 3E-05 30.0 8.1 40 37-76 32-72 (99)
83 1kt0_A FKBP51, 51 kDa FK506-bi 92.2 0.18 6.2E-06 44.5 5.5 30 46-75 324-353 (457)
84 4gyw_A UDP-N-acetylglucosamine 92.1 2 7E-05 40.6 12.9 115 22-156 4-136 (723)
85 2vyi_A SGTA protein; chaperone 91.9 0.61 2.1E-05 31.4 7.0 43 23-77 42-84 (131)
86 4gyw_A UDP-N-acetylglucosamine 91.9 1.7 5.8E-05 41.2 12.1 43 21-75 37-79 (723)
87 3q49_B STIP1 homology and U bo 91.8 0.62 2.1E-05 32.4 7.0 38 42-79 46-83 (137)
88 1elr_A TPR2A-domain of HOP; HO 91.7 2 7E-05 28.7 11.1 39 38-76 3-41 (131)
89 1zu2_A Mitochondrial import re 91.7 0.2 6.9E-06 39.0 4.6 48 21-80 74-132 (158)
90 2pl2_A Hypothetical conserved 91.6 0.4 1.4E-05 37.3 6.4 45 22-78 34-78 (217)
91 3vtx_A MAMA; tetratricopeptide 91.6 0.37 1.3E-05 35.7 5.9 28 46-73 114-141 (184)
92 2e2e_A Formate-dependent nitri 91.6 0.43 1.5E-05 35.2 6.3 30 46-75 85-117 (177)
93 1hxi_A PEX5, peroxisome target 91.5 2.6 8.8E-05 29.6 10.8 36 42-77 54-89 (121)
94 2xev_A YBGF; tetratricopeptide 91.5 1.6 5.6E-05 29.8 9.0 30 44-73 7-36 (129)
95 2c2l_A CHIP, carboxy terminus 91.4 3.3 0.00011 33.5 12.1 41 40-80 5-45 (281)
96 2kck_A TPR repeat; tetratricop 91.4 0.56 1.9E-05 30.8 6.2 31 41-71 42-72 (112)
97 2lni_A Stress-induced-phosphop 91.4 0.56 1.9E-05 32.0 6.4 48 21-80 44-91 (133)
98 3ma5_A Tetratricopeptide repea 91.1 0.22 7.6E-06 34.0 3.9 29 45-73 47-75 (100)
99 3qky_A Outer membrane assembly 91.1 2.5 8.5E-05 33.1 10.7 38 37-74 146-183 (261)
100 3urz_A Uncharacterized protein 91.0 0.57 2E-05 36.1 6.7 36 45-80 60-95 (208)
101 1elw_A TPR1-domain of HOP; HOP 91.0 0.61 2.1E-05 30.9 6.1 39 38-76 3-41 (118)
102 1na3_A Designed protein CTPR2; 90.8 0.99 3.4E-05 28.8 6.8 43 39-81 43-85 (91)
103 1a17_A Serine/threonine protei 90.6 0.87 3E-05 32.4 7.0 47 22-80 42-88 (166)
104 3ax2_A Mitochondrial import re 90.5 0.9 3.1E-05 30.9 6.4 39 41-79 19-57 (73)
105 2dba_A Smooth muscle cell asso 90.4 3.2 0.00011 28.6 14.6 44 17-72 18-61 (148)
106 3qou_A Protein YBBN; thioredox 90.3 0.93 3.2E-05 37.0 7.7 62 21-82 99-160 (287)
107 1na0_A Designed protein CTPR3; 90.1 1.2 4.2E-05 29.5 7.0 30 46-75 50-79 (125)
108 1pc2_A Mitochondria fission pr 89.7 0.99 3.4E-05 34.9 6.9 47 39-85 71-117 (152)
109 1p5q_A FKBP52, FK506-binding p 89.2 4.3 0.00015 33.8 11.2 42 40-81 231-272 (336)
110 2pl2_A Hypothetical conserved 88.9 4.9 0.00017 30.9 10.6 34 46-79 80-124 (217)
111 1ihg_A Cyclophilin 40; ppiase 88.9 3.9 0.00013 34.9 10.9 41 44-84 312-352 (370)
112 4i17_A Hypothetical protein; T 88.5 1.1 3.8E-05 34.2 6.6 28 46-73 83-110 (228)
113 1om2_A Protein (mitochondrial 88.5 1.2 4.2E-05 31.8 6.1 49 23-79 12-60 (95)
114 2r5s_A Uncharacterized protein 88.4 1 3.4E-05 33.5 6.1 32 41-72 110-141 (176)
115 2kat_A Uncharacterized protein 88.0 0.62 2.1E-05 31.9 4.3 31 42-72 56-86 (115)
116 2e2e_A Formate-dependent nitri 87.9 0.94 3.2E-05 33.3 5.6 40 38-77 43-82 (177)
117 1hh8_A P67PHOX, NCF-2, neutrop 87.9 1.4 4.7E-05 33.1 6.6 28 45-72 77-104 (213)
118 2hr2_A Hypothetical protein; a 87.9 0.68 2.3E-05 35.9 4.8 37 36-72 8-44 (159)
119 2vsy_A XCC0866; transferase, g 87.6 7.3 0.00025 34.5 12.2 45 20-76 16-60 (568)
120 3uq3_A Heat shock protein STI1 87.4 0.87 3E-05 34.7 5.2 48 23-82 169-216 (258)
121 2vsy_A XCC0866; transferase, g 87.1 11 0.00038 33.3 13.0 36 44-79 62-97 (568)
122 2fbn_A 70 kDa peptidylprolyl i 87.1 7.8 0.00027 28.9 13.3 38 36-73 35-72 (198)
123 3o48_A Mitochondria fission 1 86.9 1.4 4.9E-05 33.4 5.9 46 40-85 79-124 (134)
124 2pzi_A Probable serine/threoni 86.6 5 0.00017 37.1 10.8 38 42-79 436-473 (681)
125 1kt0_A FKBP51, 51 kDa FK506-bi 86.5 8.2 0.00028 33.7 11.7 36 37-72 266-301 (457)
126 2yhc_A BAMD, UPF0169 lipoprote 86.2 9.7 0.00033 29.2 11.5 34 42-75 44-77 (225)
127 3qky_A Outer membrane assembly 86.1 10 0.00035 29.4 12.9 40 21-72 9-48 (261)
128 3uq3_A Heat shock protein STI1 86.0 9.2 0.00031 28.7 11.9 37 36-73 2-38 (258)
129 1fch_A Peroxisomal targeting s 86.0 8.6 0.00029 30.9 10.9 29 46-74 224-252 (368)
130 3qou_A Protein YBBN; thioredox 85.9 1.7 5.9E-05 35.3 6.6 33 40-72 220-252 (287)
131 1nzn_A CGI-135 protein, fissio 85.9 2.2 7.5E-05 31.9 6.5 46 40-85 75-120 (126)
132 1elr_A TPR2A-domain of HOP; HO 85.8 3.4 0.00012 27.6 7.2 44 39-83 79-122 (131)
133 3fp2_A TPR repeat-containing p 85.4 3.6 0.00012 35.2 8.7 47 35-81 21-67 (537)
134 4eqf_A PEX5-related protein; a 85.3 13 0.00046 30.0 12.3 36 40-75 214-249 (365)
135 1wao_1 Serine/threonine protei 84.8 2.4 8E-05 37.6 7.4 38 45-82 80-117 (477)
136 3cv0_A Peroxisome targeting si 83.7 14 0.00048 28.8 13.3 39 23-73 168-206 (327)
137 2v5f_A Prolyl 4-hydroxylase su 83.6 4.4 0.00015 27.8 7.0 43 41-83 48-90 (104)
138 2vq2_A PILW, putative fimbrial 83.5 3.1 0.00011 30.8 6.6 28 46-73 15-42 (225)
139 1xnf_A Lipoprotein NLPI; TPR, 83.4 13 0.00045 28.3 12.9 43 37-79 41-83 (275)
140 1a17_A Serine/threonine protei 83.2 9.6 0.00033 26.6 13.5 40 37-76 11-50 (166)
141 2c2l_A CHIP, carboxy terminus 83.1 1.7 6E-05 35.2 5.4 30 46-75 45-74 (281)
142 1xnf_A Lipoprotein NLPI; TPR, 83.0 2.6 9E-05 32.5 6.2 32 44-75 82-113 (275)
143 3u4t_A TPR repeat-containing p 83.0 2.3 7.7E-05 32.9 5.8 46 40-85 222-267 (272)
144 2r5s_A Uncharacterized protein 82.7 0.41 1.4E-05 35.7 1.3 31 44-74 11-41 (176)
145 4i17_A Hypothetical protein; T 82.7 2.3 7.7E-05 32.5 5.6 32 51-82 192-223 (228)
146 3u4t_A TPR repeat-containing p 82.6 14 0.00049 28.2 11.2 35 42-76 6-40 (272)
147 1hh8_A P67PHOX, NCF-2, neutrop 82.5 13 0.00043 27.5 12.9 35 41-75 39-73 (213)
148 2h6f_A Protein farnesyltransfe 82.4 2.1 7.3E-05 37.0 5.9 29 45-73 137-166 (382)
149 2gw1_A Mitochondrial precursor 82.4 8.7 0.0003 32.4 9.7 95 42-155 415-512 (514)
150 1y8m_A FIS1; mitochondria, unk 82.2 3.5 0.00012 31.6 6.3 46 40-85 78-123 (144)
151 3ieg_A DNAJ homolog subfamily 81.8 17 0.00059 28.6 14.1 56 25-80 106-161 (359)
152 2h6f_A Protein farnesyltransfe 81.7 1.2 4E-05 38.7 4.0 28 46-73 207-234 (382)
153 2vq2_A PILW, putative fimbrial 81.5 13 0.00046 27.1 11.8 34 42-75 45-78 (225)
154 2ho1_A Type 4 fimbrial biogene 81.4 15 0.00052 27.7 12.5 38 39-76 71-108 (252)
155 2vyi_A SGTA protein; chaperone 81.3 9.3 0.00032 25.2 13.1 36 41-76 14-49 (131)
156 2q7f_A YRRB protein; TPR, prot 81.2 1.9 6.6E-05 32.6 4.7 45 23-79 155-199 (243)
157 2v5f_A Prolyl 4-hydroxylase su 81.2 2.4 8.2E-05 29.2 4.8 32 39-70 5-36 (104)
158 4abn_A Tetratricopeptide repea 81.0 7.2 0.00025 34.1 9.0 28 43-70 217-252 (474)
159 3fp2_A TPR repeat-containing p 80.9 3 0.0001 35.7 6.3 45 23-79 55-99 (537)
160 1fch_A Peroxisomal targeting s 80.6 3.9 0.00013 33.1 6.6 32 45-76 104-135 (368)
161 2fo7_A Synthetic consensus TPR 80.0 5.6 0.00019 26.3 6.3 27 46-72 42-68 (136)
162 2fo7_A Synthetic consensus TPR 79.9 5.6 0.00019 26.3 6.3 32 42-73 72-103 (136)
163 4abn_A Tetratricopeptide repea 79.8 3.7 0.00013 36.1 6.6 44 38-81 257-300 (474)
164 2gw1_A Mitochondrial precursor 78.0 5.3 0.00018 33.8 6.9 36 36-71 3-38 (514)
165 4eqf_A PEX5-related protein; a 77.9 5 0.00017 32.7 6.5 32 44-75 104-135 (365)
166 2yhc_A BAMD, UPF0169 lipoprote 77.7 20 0.00068 27.3 9.7 37 39-75 147-183 (225)
167 3as5_A MAMA; tetratricopeptide 77.1 16 0.00056 25.5 12.7 31 45-75 48-78 (186)
168 3hym_B Cell division cycle pro 76.9 24 0.00083 27.4 11.2 39 22-72 120-158 (330)
169 3bee_A Putative YFRE protein; 76.7 15 0.00051 24.9 10.9 37 38-74 42-78 (93)
170 1qqe_A Vesicular transport pro 76.6 15 0.00052 29.4 9.1 33 40-72 78-110 (292)
171 2ooe_A Cleavage stimulation fa 76.4 11 0.00036 33.0 8.6 41 22-75 8-48 (530)
172 1w3b_A UDP-N-acetylglucosamine 76.4 5.4 0.00019 32.8 6.3 34 41-74 69-102 (388)
173 3hym_B Cell division cycle pro 75.6 26 0.0009 27.2 12.1 43 22-76 85-128 (330)
174 1wao_1 Serine/threonine protei 75.5 5.2 0.00018 35.4 6.3 38 39-76 40-77 (477)
175 2xpi_A Anaphase-promoting comp 75.2 4.7 0.00016 35.2 5.9 47 22-80 510-557 (597)
176 1zu2_A Mitochondrial import re 73.9 2.9 0.0001 32.3 3.8 32 46-77 43-84 (158)
177 4g1t_A Interferon-induced prot 73.8 13 0.00044 31.3 8.2 37 44-80 252-288 (472)
178 3cv0_A Peroxisome targeting si 72.8 31 0.0011 26.7 12.9 25 49-73 148-172 (327)
179 1w3b_A UDP-N-acetylglucosamine 72.6 7.6 0.00026 31.9 6.3 27 46-72 244-270 (388)
180 1na0_A Designed protein CTPR3; 72.4 17 0.00058 23.6 12.7 36 40-75 10-45 (125)
181 4g1t_A Interferon-induced prot 72.1 6.7 0.00023 33.1 6.0 33 43-75 338-370 (472)
182 2q7f_A YRRB protein; TPR, prot 70.6 30 0.001 25.6 13.1 37 40-76 58-94 (243)
183 2ff4_A Probable regulatory pro 69.3 24 0.00083 30.3 9.0 86 31-120 163-257 (388)
184 4f3v_A ESX-1 secretion system 69.1 9.6 0.00033 32.0 6.2 34 46-80 215-248 (282)
185 2ond_A Cleavage stimulation fa 67.6 45 0.0016 26.6 11.9 15 106-120 218-232 (308)
186 2v6y_A AAA family ATPase, P60 67.0 8.6 0.00029 26.2 4.6 32 37-68 9-40 (83)
187 2xpi_A Anaphase-promoting comp 66.9 62 0.0021 27.9 11.6 27 46-72 414-440 (597)
188 1orj_A Flagellar protein FLIS; 66.4 5.9 0.0002 29.6 3.9 45 21-69 15-63 (130)
189 2ond_A Cleavage stimulation fa 66.1 12 0.00043 30.1 6.2 29 45-73 105-133 (308)
190 4a1s_A PINS, partner of inscut 66.0 15 0.0005 30.2 6.7 38 36-73 45-82 (411)
191 2w2u_A Hypothetical P60 katani 65.2 11 0.00036 25.9 4.7 32 37-68 17-48 (83)
192 1wfd_A Hypothetical protein 15 63.0 11 0.00038 26.3 4.6 31 38-68 14-44 (93)
193 3nf1_A KLC 1, kinesin light ch 62.5 8.7 0.0003 29.8 4.4 36 36-71 275-310 (311)
194 3mkr_A Coatomer subunit epsilo 61.2 62 0.0021 25.9 11.9 42 32-73 113-164 (291)
195 4b4t_Q 26S proteasome regulato 60.7 40 0.0014 27.8 8.5 31 42-72 7-37 (434)
196 3ro3_A PINS homolog, G-protein 59.3 21 0.00072 24.1 5.6 34 39-72 9-42 (164)
197 3nf1_A KLC 1, kinesin light ch 59.2 21 0.00072 27.5 6.2 44 13-68 13-56 (311)
198 2if4_A ATFKBP42; FKBP-like, al 59.1 12 0.00042 31.1 5.0 35 41-75 232-266 (338)
199 1qqe_A Vesicular transport pro 58.9 45 0.0015 26.5 8.3 34 41-74 160-193 (292)
200 3ro2_A PINS homolog, G-protein 58.4 23 0.00077 27.3 6.2 35 39-73 5-39 (338)
201 2cpt_A SKD1 protein, vacuolar 58.4 13 0.00044 27.1 4.4 30 38-67 17-46 (117)
202 2v6x_A Vacuolar protein sortin 57.5 16 0.00055 24.7 4.6 31 38-68 12-42 (85)
203 4a5x_A MITD1, MIT domain-conta 57.0 15 0.00053 25.2 4.4 29 40-68 17-45 (86)
204 2crb_A Nuclear receptor bindin 57.0 24 0.00082 25.0 5.4 23 45-67 21-43 (97)
205 3iqc_A FLIS, flagellar protein 56.2 19 0.00066 26.7 5.1 46 21-70 22-67 (131)
206 2cfu_A SDSA1; SDS-hydrolase, l 55.0 25 0.00086 32.8 6.8 44 39-82 449-492 (658)
207 3rjv_A Putative SEL1 repeat pr 53.8 9.8 0.00034 29.1 3.3 42 27-68 6-47 (212)
208 3as5_A MAMA; tetratricopeptide 53.5 52 0.0018 22.7 13.5 34 42-75 79-112 (186)
209 3edt_B KLC 2, kinesin light ch 53.3 24 0.00081 26.6 5.5 33 36-68 124-156 (283)
210 3ro3_A PINS homolog, G-protein 52.8 34 0.0012 23.0 5.8 33 40-72 50-82 (164)
211 1vh6_A Flagellar protein FLIS; 52.6 23 0.0008 26.7 5.1 45 21-69 19-63 (145)
212 3edt_B KLC 2, kinesin light ch 50.2 42 0.0014 25.2 6.5 34 36-69 40-73 (283)
213 3sf4_A G-protein-signaling mod 49.8 33 0.0011 27.6 6.1 33 41-73 11-43 (406)
214 4b4t_P 26S proteasome regulato 48.4 65 0.0022 28.3 8.1 108 41-152 139-258 (445)
215 3dra_A Protein farnesyltransfe 46.3 22 0.00077 29.7 4.6 41 20-72 60-102 (306)
216 3gw4_A Uncharacterized protein 45.0 32 0.0011 24.8 4.8 34 37-70 105-138 (203)
217 2ifu_A Gamma-SNAP; membrane fu 43.4 1.2E+02 0.0042 24.0 9.9 38 35-72 31-69 (307)
218 2ifu_A Gamma-SNAP; membrane fu 42.5 1.3E+02 0.0043 23.9 10.3 30 40-70 117-146 (307)
219 3ro2_A PINS homolog, G-protein 42.1 36 0.0012 26.1 4.9 35 37-71 261-295 (338)
220 4fx5_A VON willebrand factor t 41.5 40 0.0014 30.0 5.7 37 34-70 377-413 (464)
221 4a1s_A PINS, partner of inscut 41.4 50 0.0017 26.9 6.0 33 39-71 303-335 (411)
222 3mv2_B Coatomer subunit epsilo 39.6 55 0.0019 27.7 6.0 28 44-71 141-168 (310)
223 4a3n_A Transcription factor SO 39.0 45 0.0015 21.0 4.3 41 111-155 14-54 (71)
224 3gw4_A Uncharacterized protein 38.3 57 0.0019 23.3 5.3 31 38-68 65-95 (203)
225 1ckt_A High mobility group 1 p 37.4 65 0.0022 20.3 4.9 41 113-155 15-55 (71)
226 1xi4_A Clathrin heavy chain; a 37.2 47 0.0016 34.6 5.9 81 41-122 1282-1366(1630)
227 2vkj_A TM1634; membrane protei 37.1 90 0.0031 22.1 5.7 41 37-78 51-91 (106)
228 3u64_A Protein TP_0956; tetrat 36.8 22 0.00076 30.3 3.0 19 53-71 254-272 (301)
229 3ulq_A Response regulator aspa 36.3 1.3E+02 0.0045 24.4 7.8 35 39-73 143-177 (383)
230 1o3u_A Conserved hypothetical 36.1 61 0.0021 23.5 5.1 31 37-67 14-44 (135)
231 2e2a_A Protein (enzyme IIA); h 35.8 57 0.002 23.3 4.7 34 35-68 16-49 (105)
232 2xze_A STAM-binding protein; h 35.6 86 0.0029 23.5 5.9 32 38-69 39-70 (146)
233 2ooe_A Cleavage stimulation fa 35.3 37 0.0013 29.5 4.4 28 45-72 52-79 (530)
234 3sf4_A G-protein-signaling mod 34.8 53 0.0018 26.3 5.0 34 38-71 266-299 (406)
235 1wcr_A PTS system, N, N'-diace 34.5 62 0.0021 23.0 4.7 33 35-67 14-46 (103)
236 1hry_A Human SRY; DNA, DNA-bin 34.4 63 0.0022 20.7 4.5 41 111-155 16-56 (76)
237 3qwp_A SET and MYND domain-con 34.1 2.3E+02 0.0078 24.5 10.0 87 43-143 333-424 (429)
238 3k1s_A PTS system, cellobiose- 34.0 63 0.0022 23.2 4.7 34 35-68 18-51 (109)
239 4b4t_Q 26S proteasome regulato 33.8 1.9E+02 0.0065 23.5 8.8 105 41-148 137-252 (434)
240 3q15_A PSP28, response regulat 32.9 63 0.0022 26.4 5.3 34 39-72 261-294 (378)
241 3l8r_A PTCA, putative PTS syst 32.9 66 0.0023 23.6 4.7 35 34-68 32-66 (120)
242 3ulq_A Response regulator aspa 32.8 1.6E+02 0.0055 23.8 7.8 34 39-72 184-217 (383)
243 3qww_A SET and MYND domain-con 32.6 90 0.0031 27.3 6.5 33 37-69 380-412 (433)
244 1klx_A Cysteine rich protein B 32.6 1.3E+02 0.0043 21.1 7.7 30 39-68 57-90 (138)
245 3o10_A Sacsin; all-helical dom 32.1 66 0.0022 23.7 4.7 39 23-66 5-43 (141)
246 3q7a_A Farnesyltransferase alp 31.8 57 0.002 28.0 4.9 41 21-73 82-123 (349)
247 2rkl_A Vacuolar protein sortin 31.5 98 0.0034 19.4 5.9 45 24-68 4-49 (53)
248 1wz6_A HMG-box transcription f 31.3 74 0.0025 20.8 4.5 41 111-155 19-59 (82)
249 1i11_A Transcription factor SO 31.3 64 0.0022 21.1 4.2 42 111-156 16-57 (81)
250 2crj_A SWI/SNF-related matrix- 31.0 72 0.0025 21.5 4.5 42 111-156 19-60 (92)
251 3f27_D Transcription factor SO 30.9 75 0.0026 20.7 4.5 41 111-155 18-58 (83)
252 1dce_A Protein (RAB geranylger 30.7 60 0.0021 29.4 5.1 40 22-73 102-143 (567)
253 1wgf_A Upstream binding factor 30.4 68 0.0023 21.6 4.3 43 111-157 32-74 (90)
254 2eqz_A High mobility group pro 30.3 73 0.0025 21.1 4.4 43 111-155 27-69 (86)
255 1hme_A High mobility group pro 29.4 85 0.0029 20.1 4.5 41 111-155 18-58 (77)
256 2wxu_A Phospholipase C; cytoly 29.2 78 0.0027 27.7 5.3 55 15-69 63-128 (370)
257 3u64_A Protein TP_0956; tetrat 28.5 72 0.0025 27.1 4.9 27 46-72 206-237 (301)
258 2dl1_A Spartin; SPG20, MIT, st 27.9 1.8E+02 0.006 21.2 6.4 43 22-66 7-49 (116)
259 1dce_A Protein (RAB geranylger 27.9 53 0.0018 29.7 4.2 39 22-72 58-106 (567)
260 3u3w_A Transcriptional activat 27.2 2.2E+02 0.0075 22.1 11.3 38 38-75 74-111 (293)
261 1k99_A Upstream binding factor 27.2 1.4E+02 0.0046 20.5 5.4 43 111-157 22-64 (99)
262 2yhe_A SEC-alkyl sulfatase; hy 32.5 14 0.00047 34.8 0.0 43 39-81 461-503 (668)
263 3u3w_A Transcriptional activat 26.2 1E+02 0.0035 24.1 5.3 31 41-71 198-228 (293)
264 2d7l_A WD repeat and HMG-box D 26.1 74 0.0025 21.2 3.7 45 111-158 17-61 (81)
265 3u2b_C Transcription factor SO 25.8 1E+02 0.0035 19.8 4.4 41 111-155 14-54 (79)
266 2e6o_A HMG box-containing prot 25.6 80 0.0027 21.0 3.9 41 111-155 29-69 (87)
267 3nm9_A HMG-D, high mobility gr 25.6 87 0.003 20.0 3.9 38 111-155 15-52 (73)
268 2cs1_A PMS1 protein homolog 1; 25.5 68 0.0023 21.6 3.5 44 111-158 19-62 (92)
269 2ijq_A Hypothetical protein; s 25.5 76 0.0026 24.4 4.1 26 43-68 79-104 (161)
270 3qww_A SET and MYND domain-con 24.9 2.8E+02 0.0094 24.1 8.3 25 44-68 345-369 (433)
271 2uy1_A Cleavage stimulation fa 24.1 2.2E+02 0.0076 24.9 7.5 38 36-73 11-48 (493)
272 3mv2_B Coatomer subunit epsilo 24.0 1.8E+02 0.0062 24.4 6.6 43 41-83 102-144 (310)
273 2rpa_A Katanin P60 ATPase-cont 23.9 1.1E+02 0.0036 20.7 4.1 28 40-67 13-40 (78)
274 2xm6_A Protein corresponding t 23.8 2.7E+02 0.0091 23.5 7.9 43 26-68 26-72 (490)
275 3n71_A Histone lysine methyltr 23.7 3.8E+02 0.013 23.6 11.6 43 22-69 297-339 (490)
276 3ly7_A Transcriptional activat 23.6 1.1E+02 0.0038 26.6 5.3 26 46-71 284-309 (372)
277 2a9u_A Ubiquitin carboxyl-term 23.4 1.2E+02 0.004 22.8 4.8 32 38-69 41-72 (144)
278 3ly7_A Transcriptional activat 23.4 87 0.003 27.3 4.6 41 33-73 290-344 (372)
279 1klx_A Cysteine rich protein B 23.4 1.2E+02 0.0041 21.2 4.7 32 38-69 92-127 (138)
280 4h7y_A Dual specificity protei 23.1 1.8E+02 0.0061 22.4 5.8 33 41-73 96-128 (161)
281 3q15_A PSP28, response regulat 23.1 3E+02 0.01 22.2 8.9 30 40-69 223-252 (378)
282 2hsb_A Hypothetical UPF0332 pr 23.0 1.5E+02 0.0051 20.6 5.1 29 38-66 11-39 (126)
283 3kae_A CDC27, possible protein 22.5 1.4E+02 0.0049 23.9 5.2 69 45-122 120-188 (242)
284 3qwp_A SET and MYND domain-con 22.1 1.2E+02 0.0041 26.3 5.3 32 38-69 370-401 (429)
285 1ouv_A Conserved hypothetical 21.8 1.1E+02 0.0036 23.4 4.5 32 38-69 145-180 (273)
286 1gt0_D Transcription factor SO 21.8 84 0.0029 20.3 3.3 42 111-156 14-55 (80)
287 1ufb_A TT1696 protein; structu 21.7 2.1E+02 0.0072 19.9 5.8 29 38-66 10-38 (127)
288 1ouv_A Conserved hypothetical 21.5 2.6E+02 0.009 21.0 12.5 25 43-67 10-34 (273)
289 3n71_A Histone lysine methyltr 21.4 1.3E+02 0.0044 26.8 5.4 32 38-69 392-423 (490)
290 4fm3_A Uncharacterized hypothe 21.3 1.7E+02 0.0058 20.7 4.9 28 39-66 34-61 (98)
291 4e6h_A MRNA 3'-END-processing 21.0 3E+02 0.01 25.5 8.0 54 22-75 47-102 (679)
292 1wol_A ST0689, 122AA long cons 20.9 1.7E+02 0.0059 20.3 5.1 29 38-66 10-38 (122)
293 4b4t_R RPN7, 26S proteasome re 20.8 95 0.0032 26.9 4.3 32 42-73 134-165 (429)
294 1olp_A Alpha-toxin; zinc phosp 20.7 89 0.003 27.3 4.0 56 15-70 63-129 (370)
295 3uo3_A J-type CO-chaperone JAC 20.5 2.1E+02 0.0072 22.0 5.9 40 26-66 122-161 (181)
296 1wjt_A Transcription elongatio 20.4 1E+02 0.0035 21.8 3.7 28 45-72 20-47 (103)
297 2rg8_A Programmed cell death p 20.4 2.8E+02 0.0095 20.9 8.3 104 40-159 11-120 (165)
298 2jpu_A ORF C02003 protein; sol 20.2 1.4E+02 0.0049 22.0 4.6 30 37-66 5-34 (129)
299 2co9_A Thymus high mobility gr 20.1 86 0.0029 21.6 3.2 41 111-155 29-69 (102)
300 1j46_A SRY, sex-determining re 20.1 1E+02 0.0034 20.3 3.4 41 111-155 16-56 (85)
No 1
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.86 E-value=4.1e-22 Score=140.13 Aligned_cols=71 Identities=34% Similarity=0.525 Sum_probs=66.7
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKT 163 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~ 163 (201)
.|||+||||++ +++.++||++||+|++++|||+++.+.+.+.|+.|++||++|+||.+|..||.++..+..
T Consensus 3 ~~~y~iLgv~~-~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 73 (77)
T 1hdj_A 3 KDYYQTLGLAR-GASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK 73 (77)
T ss_dssp CCSHHHHTCCT-TCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred CCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence 58999999999 999999999999999999999999888999999999999999999999999998865443
No 2
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.9e-22 Score=140.07 Aligned_cols=71 Identities=34% Similarity=0.549 Sum_probs=67.2
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
...|||+||||++ +++..+||++||+|++++|||++..+.+.+.|+.|++||++|+||.+|..||.++..+
T Consensus 5 ~~~~~y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 5 SSGDYYEILGVSR-GASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CSCCHHHHHTCCT-TCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 4569999999999 9999999999999999999999988889999999999999999999999999988754
No 3
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6.3e-22 Score=142.80 Aligned_cols=72 Identities=35% Similarity=0.509 Sum_probs=67.2
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCc
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDK 162 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~ 162 (201)
...|||+||||++ +++.++||++||+|+++||||+++.+.+.+.|+.|++||++|+||.+|..||.++....
T Consensus 5 ~~~~~y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 76 (88)
T 2ctr_A 5 SSGSYYDILGVPK-SASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAF 76 (88)
T ss_dssp CCCSHHHHHTCCT-TCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHH
T ss_pred CCCCHHHHcCcCC-CCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence 4569999999999 99999999999999999999999987899999999999999999999999999886443
No 4
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.4e-21 Score=140.99 Aligned_cols=71 Identities=31% Similarity=0.424 Sum_probs=67.0
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
...|||+||||++ +++..+||++||+|+++||||++..+.+.+.|+.|++||++|+||.+|..||.++...
T Consensus 15 ~~~d~y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 15 LDFDPYRVLGVSR-TASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSSCHHHHHTCCT-TCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred CCCCHHHHcCcCC-CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 4569999999999 9999999999999999999999998889999999999999999999999999988643
No 5
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=137.56 Aligned_cols=71 Identities=31% Similarity=0.450 Sum_probs=65.7
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
...|||+||||++ +++..+||++||+|+++||||+++. +.+.+.|+.|++||++|+||.+|..||.++..+
T Consensus 5 ~~~~~y~iLgv~~-~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 5 SSGDYYQILGVPR-NASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp CCSCHHHHHTCCT-TCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 4569999999999 9999999999999999999999974 458999999999999999999999999988654
No 6
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.5e-21 Score=136.78 Aligned_cols=70 Identities=34% Similarity=0.502 Sum_probs=65.0
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHHHcCChhHHHHhhccCCCC
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV--GADTANKLINEAWEVLSDPKRREAYDLLMCFD 161 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~ 161 (201)
..|||+||||++ +++..+||++||+|+++||||+++.. .+.+.|+.|++||++|+||.+|..||.++..+
T Consensus 8 ~~~~y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 79 (82)
T 2ej7_A 8 MVDYYEVLDVPR-QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGP 79 (82)
T ss_dssp SCCHHHHTTCCT-TCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCS
T ss_pred CcCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 469999999999 99999999999999999999999765 47889999999999999999999999988654
No 7
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.84 E-value=3.9e-21 Score=133.89 Aligned_cols=67 Identities=34% Similarity=0.535 Sum_probs=62.4
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
...|||+||||++ +++..+||++||+|++++|||+++.. .+.|+.|++||++|+||.+|..||.+|.
T Consensus 6 ~~~~~y~iLgl~~-~a~~~eIk~ayr~l~~~~HPD~~~~~--~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 6 KETGYYDVLGVKP-DASDNELKKAYRKMALKFHPDKNPDG--AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCCCHHHHHTCCT-TCCHHHHHHHHHHHHHHTCTTTCTTC--HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCcCH--HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 4579999999999 99999999999999999999999764 6899999999999999999999999885
No 8
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.2e-21 Score=142.04 Aligned_cols=75 Identities=28% Similarity=0.398 Sum_probs=67.0
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCCcccc
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTVQ 165 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~~ 165 (201)
...|||+||||++ +++.++||++||+|+++||||++.. +.+.+.|+.|++||+||+||.+|..||..+.......
T Consensus 15 ~~~~~Y~vLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~e~~~ 90 (99)
T 2yua_A 15 SRTALYDLLGVPS-TATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDEDLR 90 (99)
T ss_dssp CSSHHHHHHTCCT-TCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCHHHHH
T ss_pred CccCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccccccc
Confidence 4569999999999 9999999999999999999999964 5589999999999999999999999999876554443
No 9
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5e-21 Score=138.97 Aligned_cols=74 Identities=36% Similarity=0.553 Sum_probs=67.0
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHHHcCChhHHHHhhccCCCCccc
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV--GADTANKLINEAWEVLSDPKRREAYDLLMCFDKTV 164 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~ 164 (201)
...|||+||||++ +++..+||++||+|+++||||+++.. .+.+.|+.|++||++|+||.+|..||..+......
T Consensus 7 ~~~~~y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 82 (92)
T 2dmx_A 7 GMANYYEVLGVQA-SASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA 82 (92)
T ss_dssp CCCCHHHHHTCCT-TCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred CCcCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 3469999999999 99999999999999999999999765 47899999999999999999999999998765443
No 10
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.83 E-value=4e-21 Score=139.71 Aligned_cols=70 Identities=30% Similarity=0.597 Sum_probs=64.5
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-------chHHHHHHHHHHHHHHcCChhHHHHhhccCCC
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-------VGADTANKLINEAWEVLSDPKRREAYDLLMCF 160 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-------~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~ 160 (201)
...|||+||||++ +++..+||++||+|+++||||+++. ..+.+.|+.|++||++|+||.+|+.||..+..
T Consensus 14 ~~~~~y~iLgv~~-~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 14 LKKDWYSILGADP-SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp SCSCHHHHTTCCT-TCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred CCCChHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 4569999999999 9999999999999999999999874 34889999999999999999999999998764
No 11
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.4e-21 Score=142.78 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=66.2
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCC-CchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCc
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLSDPKRREAYDLLMCFDK 162 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~ 162 (201)
...|||+||||++ +++..+||++||+|+++||||+++ .+.+.+.|+.|++||++|+||.+|..||.++..+.
T Consensus 18 ~~~d~Y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 90 (112)
T 2ctq_A 18 DTEDYYTLLGCDE-LSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM 90 (112)
T ss_dssp CCCCHHHHTTCCT-TSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence 4579999999999 999999999999999999999998 45689999999999999999999999999886543
No 12
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.82 E-value=8.4e-21 Score=138.02 Aligned_cols=70 Identities=30% Similarity=0.476 Sum_probs=64.2
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCc
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCFDK 162 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~ 162 (201)
...|||+||||++ +++..+||++||+|+++||||+++.. .+.|+.|++||++|+||.+|+.||.++....
T Consensus 6 ~~~~~y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~--~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 75 (92)
T 2o37_A 6 KETKLYDLLGVSP-SANEQELKKGYRKAALKYHPDKPTGD--TEKFKEISEAFEILNDPQKREIYDQYGLEAA 75 (92)
T ss_dssp SCCHHHHHHTCCT-TCCHHHHHHHHHHHHHHHCTTSTTCC--HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHH
T ss_pred cCCCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCh--HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHh
Confidence 4569999999999 99999999999999999999999765 6899999999999999999999999886443
No 13
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=139.31 Aligned_cols=71 Identities=35% Similarity=0.465 Sum_probs=63.8
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--HHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--ADTANKLINEAWEVLSDPKRREAYDLLMCFDKT 163 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~ 163 (201)
.|||+||||++ +++.++||++||+|++++|||+++... +.+.|+.|++||++|+||.+|+.||.++..+..
T Consensus 2 ~d~Y~iLgv~~-~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~ 74 (99)
T 2lgw_A 2 ASYYEILDVPR-SASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT 74 (99)
T ss_dssp CCHHHHSSSCT-TSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred CCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 58999999999 999999999999999999999997653 789999999999999999999999998865544
No 14
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.81 E-value=9.8e-21 Score=140.27 Aligned_cols=73 Identities=34% Similarity=0.522 Sum_probs=67.1
Q ss_pred ccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCCccc
Q 037661 91 KKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTV 164 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~ 164 (201)
..|||+||||++ +++.++||++||+|+++||||+++. +.+++.|+.|++||++|+||.+|..||..+..+...
T Consensus 2 ~~~~y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 75 (103)
T 1bq0_A 2 KQDYYEILGVSK-TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 75 (103)
T ss_dssp CCCSTTTTSSCS-SCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCS
T ss_pred CCCHHHHcCcCC-CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcc
Confidence 368999999999 9999999999999999999999985 558999999999999999999999999999876543
No 15
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=4.8e-20 Score=138.04 Aligned_cols=74 Identities=32% Similarity=0.452 Sum_probs=67.0
Q ss_pred hhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661 89 AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSS-VGADTANKLINEAWEVLSDPKRREAYDLLMCFDKT 163 (201)
Q Consensus 89 ~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~ 163 (201)
....|||+||||++ +++.++||++||+|++++|||+++. +.+.+.|+.|++||++|+||.+|+.||.++..+..
T Consensus 14 ~~~~~~Y~vLgv~~-~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~ 88 (109)
T 2ctw_A 14 TSGESLYHVLGLDK-NATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109)
T ss_dssp SCSCCHHHHHTCCT-TCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred CCCCCHHHHcCcCC-CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence 34569999999999 9999999999999999999999975 45889999999999999999999999998865543
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.79 E-value=4.9e-20 Score=137.72 Aligned_cols=71 Identities=25% Similarity=0.430 Sum_probs=65.5
Q ss_pred hhccCcchhccccCCCC-CHHHHHHHHHHHHHhhCCCCCCC----chHHHHHHHHHHHHHHcCChhHHHHhhccCCC
Q 037661 89 AEKKSWYAVLGIRDHRA-GVDVIKKRYEALVQLFKPDRCSS----VGADTANKLINEAWEVLSDPKRREAYDLLMCF 160 (201)
Q Consensus 89 ~~~~d~Y~vLgv~~~~a-s~~eIkkaYrkla~~~HPDk~~~----~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~ 160 (201)
....|||+||||++ ++ +..+||++||+|++++|||+++. ..+.+.|+.|++||++|+||.+|+.||..+..
T Consensus 12 ~~~~~~y~iLgv~~-~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 12 CGLENCYDVLEVNR-EEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TTTSCHHHHTTCCG-GGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred cCCCCHHHHcCCCC-CCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 35679999999999 99 99999999999999999999986 44889999999999999999999999998854
No 17
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-19 Score=130.53 Aligned_cols=62 Identities=27% Similarity=0.478 Sum_probs=59.2
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHH
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~ 152 (201)
...|||+||||++ +++..+||++||+|+++||||+++..++.+.|+.|++||++|+||.+|+
T Consensus 25 ~~~~~y~iLgv~~-~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 25 NSKDSWDMLGVKP-GASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp TCSSHHHHHTCCT-TCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCHHHHcCcCC-CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence 4689999999999 9999999999999999999999998889999999999999999999876
No 18
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.77 E-value=3.4e-19 Score=145.13 Aligned_cols=71 Identities=27% Similarity=0.405 Sum_probs=65.6
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCC-CchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCcc
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKT 163 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~ 163 (201)
.|||+||||++ +++..+||++||+|++++|||+++ .+.+.++|+.|++||++|+||.+|+.||+++..+..
T Consensus 2 ~~~y~~l~~~~-~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~ 73 (210)
T 3apq_A 2 QNFYSLLGVSK-TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE 73 (210)
T ss_dssp CCHHHHHTCCT-TCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred CCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence 58999999999 999999999999999999999996 455899999999999999999999999999876544
No 19
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.75 E-value=6.1e-19 Score=139.32 Aligned_cols=69 Identities=30% Similarity=0.681 Sum_probs=63.7
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch-------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG-------ADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~-------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
...|||+||||++ +++.++||++||+|++++|||++.... +.+.|+.|++||++|+||.+|+.||..+.
T Consensus 8 ~~~~~y~iLgv~~-~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 8 PKKDWYSILGADP-SANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCSHHHHHHTCCT-TCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CCCChhHhcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3569999999999 999999999999999999999998763 67999999999999999999999998764
No 20
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.72 E-value=2.9e-18 Score=138.26 Aligned_cols=68 Identities=25% Similarity=0.473 Sum_probs=62.4
Q ss_pred ccCcchhccccCCCCC--HHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 91 KKSWYAVLGIRDHRAG--VDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 91 ~~d~Y~vLgv~~~~as--~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
..|||+||||++ +++ ..+||++||+|+++||||+++... +.+.|..|++||+||+||.+|+.||..+.
T Consensus 3 ~~d~Y~iLgl~~-~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 3 AMNYFELFGLPI-QFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp -CCHHHHTTCCS-SSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 569999999999 888 999999999999999999998765 67899999999999999999999998664
No 21
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.72 E-value=3.1e-17 Score=142.21 Aligned_cols=115 Identities=29% Similarity=0.333 Sum_probs=98.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHHhh
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLF 121 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~ 121 (201)
+..+|..++..|+++.|+..++++..++|....+...+..+..........++|.+||+.+ .++..+|+++|+++++++
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~-~~~~~~~~~~y~~~~l~~ 410 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR-NAKKQEIIKAYRKLALQW 410 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST-TCCTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc-cCCHHHHHHHHHHHHHHh
Confidence 3444788899999999999999999999999888888877776656667789999999999 999999999999999999
Q ss_pred CCCCCCCch----HHHHHHHHHHHHHHcCChhHHHHhhcc
Q 037661 122 KPDRCSSVG----ADTANKLINEAWEVLSDPKRREAYDLL 157 (201)
Q Consensus 122 HPDk~~~~~----a~~~f~~i~~Ay~vLsdp~kR~~YD~~ 157 (201)
|||+.+... +++.|+.|++||++|+||++|..||++
T Consensus 411 ~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g 450 (450)
T 2y4t_A 411 HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG 450 (450)
T ss_dssp CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence 999998754 889999999999999999999999974
No 22
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.72 E-value=4.7e-19 Score=133.94 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=61.5
Q ss_pred hccCcchhccccCCCCCH--HHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCCC
Q 037661 90 EKKSWYAVLGIRDHRAGV--DVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMCF 160 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~--~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~ 160 (201)
...+||+||||++ +++. .+||++||+|++++|||+++. .++|+.|++||+||+||.+|+.||.++..
T Consensus 6 ~~~~~Y~iLgv~~-~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~~ 74 (114)
T 1gh6_A 6 ESLQLMDLLGLER-SAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGGF 74 (114)
T ss_dssp HHHHHHHHTTCCT-TSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred hhhhHHHHcCCCC-CCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhcccc
Confidence 3458999999999 9999 999999999999999999876 58999999999999999999999987753
No 23
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.72 E-value=4.6e-19 Score=155.82 Aligned_cols=69 Identities=38% Similarity=0.642 Sum_probs=0.0
Q ss_pred hccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 90 EKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
..+|||+||||++ +|+.++||+|||+|+++||||+++...++++|++|++||++|+||.+|+.||+++.
T Consensus 26 ~~~d~Y~vLgv~~-~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 26 ELKDYYAILGVQP-TDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccCHHHHcCcCC-CCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 3469999999999 99999999999999999999999887899999999999999999999999999854
No 24
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.71 E-value=5.7e-18 Score=136.23 Aligned_cols=66 Identities=26% Similarity=0.540 Sum_probs=61.4
Q ss_pred CcchhccccCCCC--CHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 93 SWYAVLGIRDHRA--GVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 93 d~Y~vLgv~~~~a--s~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
|||+||||++ ++ +..+||++||+|+++||||+++..+ +.+.|..|++||+||+||.+|+.||....
T Consensus 2 d~y~lLgl~~-~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 2 DYFTLFGLPA-RYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp HHHHHTTCCS-SSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CHHHHCCCCC-CCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 7999999999 98 9999999999999999999998764 55799999999999999999999998765
No 25
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.70 E-value=1.6e-18 Score=140.62 Aligned_cols=79 Identities=16% Similarity=0.312 Sum_probs=68.2
Q ss_pred hhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch----HHHHHHHHHHHHHHcCCh
Q 037661 73 QGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG----ADTANKLINEAWEVLSDP 148 (201)
Q Consensus 73 ~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsdp 148 (201)
..++.++..+... .+...|||+||||++ .++..+||++||+|+++||||+++... +.+.|+.|++||++|+||
T Consensus 100 ~niRaLLssl~~v--l~~~~d~Y~vLgv~~-~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~ 176 (182)
T 1n4c_A 100 RNIRALLSTMHTV--LWAGETKWKPVGMAD-LVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ 176 (182)
T ss_dssp TCHHHHHHHGGGG--SCTTCCCCCCCCGGG-GSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hcCccchhhcCCCCC-CCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCH
Confidence 4566677665543 345579999999999 999999999999999999999998665 789999999999999999
Q ss_pred hHHHHh
Q 037661 149 KRREAY 154 (201)
Q Consensus 149 ~kR~~Y 154 (201)
.+|+.|
T Consensus 177 ~kR~~Y 182 (182)
T 1n4c_A 177 GQKPLY 182 (182)
T ss_dssp HSSCCC
T ss_pred HhhhhC
Confidence 999876
No 26
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.69 E-value=1e-17 Score=118.63 Aligned_cols=60 Identities=13% Similarity=0.284 Sum_probs=55.7
Q ss_pred cCcchhccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 92 KSWYAVLGIRDHR--AGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 92 ~d~Y~vLgv~~~~--as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
.++|+||||++ + ++..+||++||+|++++|||++.. .+.|+.|++||++|+|+.+|..++
T Consensus 11 ~~~y~iLgl~~-~~~a~~~eIk~aYr~la~~~HPDk~~~---~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 11 ERLLELLKLPR-QLWGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHTCCS-SSTTCHHHHHHHHHHHHHHSSGGGSCC---HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 48999999999 9 999999999999999999999764 689999999999999999998844
No 27
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.68 E-value=2.1e-18 Score=139.07 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=58.6
Q ss_pred hccCcchhccccCCCCC--HHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 90 EKKSWYAVLGIRDHRAG--VDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~as--~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
...|||+||||++ +++ .++||+|||++++++|||+++. +++|+.|++||++|+||.+|+.||++|.
T Consensus 9 ~~~d~Y~vLGl~~-~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 9 ESLQLMDLLGLER-SAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHTTTCCG-GGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccHHHHcCCCC-CCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 3458999999999 998 6999999999999999999876 4899999999999999999999999986
No 28
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.68 E-value=2.1e-17 Score=136.66 Aligned_cols=69 Identities=22% Similarity=0.453 Sum_probs=61.5
Q ss_pred hccCcchhccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCch------HHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 90 EKKSWYAVLGIRDHR--AGVDVIKKRYEALVQLFKPDRCSSVG------ADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 90 ~~~d~Y~vLgv~~~~--as~~eIkkaYrkla~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
...|||+||||++ . ++..+||++||+|+++||||+++... +.+.|+.|++||+||+||.+|+.||....
T Consensus 41 ~~~d~y~lLgv~~-~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~ 117 (207)
T 3bvo_A 41 PTRDYFSLMDCNR-SFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH 117 (207)
T ss_dssp TTCCHHHHTTSCS-CSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCCHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 4569999999998 6 78999999999999999999997653 56789999999999999999999996543
No 29
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.68 E-value=6.5e-18 Score=123.07 Aligned_cols=72 Identities=15% Similarity=0.264 Sum_probs=62.4
Q ss_pred hhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch----HHHHHHHHHHHHHHcCC
Q 037661 73 QGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG----ADTANKLINEAWEVLSD 147 (201)
Q Consensus 73 ~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsd 147 (201)
..++.++..+... .+...++|++|||.+ .++..+||+|||++++++|||+++... |++.|+.|++||+||.+
T Consensus 16 ~~ir~lL~~l~~~--L~~~~~~y~~Lgv~~-~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 16 RNIRALLSTMHTV--LWAGETKWKPVGMAD-LVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp TCHHHHHHHGGGT--SCTTCCSCCCCCGGG-SSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--hcccccCCeecCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 4578888888776 233368999999999 999999999999999999999997653 78999999999999964
No 30
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.68 E-value=1.2e-17 Score=124.68 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=66.0
Q ss_pred HHHhCCCc-hhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCc--------hHHHHH
Q 037661 65 ARMKNPNH-QGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSV--------GADTAN 135 (201)
Q Consensus 65 a~~~~p~~-~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~--------~a~~~f 135 (201)
...+.+.. ..++.++..+... .+...|||+|||++. ++..+||++||++++++||||++.. .|+++|
T Consensus 15 i~~W~~~~~~~ir~lL~~l~~~--l~~~~d~Y~vl~~~~--As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F 90 (106)
T 3ag7_A 15 IRKWSSGKSGNIRSLLSTLQYI--LWSGSGWKPVPLMDM--IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVF 90 (106)
T ss_dssp HHHHHTTTTTCHHHHHTTGGGT--SCTTSCCCCCCGGGS--CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHH--hcccCCHHHHcCCCC--CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHH
Confidence 34444444 3488888887764 456689999999874 9999999999999999999998642 268999
Q ss_pred HHHHHHHHHcCChh
Q 037661 136 KLINEAWEVLSDPK 149 (201)
Q Consensus 136 ~~i~~Ay~vLsdp~ 149 (201)
+.|++||++|+|+.
T Consensus 91 ~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 91 ELLQEAWDHFNTLG 104 (106)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCcc
Confidence 99999999999985
No 31
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.65 E-value=2.9e-17 Score=118.74 Aligned_cols=59 Identities=17% Similarity=0.062 Sum_probs=54.8
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCch--HHHHHHHHHHHHHHcCChhHH
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVG--ADTANKLINEAWEVLSDPKRR 151 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsdp~kR 151 (201)
.++|+||||.+ +++.++||++||+|+++||||+++... +.+.|+.|++||++|+|...|
T Consensus 16 ~~~y~vLgv~~-~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 16 KEVTSVVEQAW-KLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHHTT-SSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 48999999999 999999999999999999999998753 789999999999999998766
No 32
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.61 E-value=1.8e-16 Score=128.60 Aligned_cols=68 Identities=22% Similarity=0.409 Sum_probs=60.4
Q ss_pred hhccCcchhc------cccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccC
Q 037661 89 AEKKSWYAVL------GIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLM 158 (201)
Q Consensus 89 ~~~~d~Y~vL------gv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~ 158 (201)
....|||+|| |+++.+++..+||++||+|++++|||+++. +.+.|+.|++||+||+||.+|+.||..+
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 3456999999 455338999999999999999999999986 5789999999999999999999999865
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.60 E-value=1.5e-16 Score=151.82 Aligned_cols=75 Identities=25% Similarity=0.372 Sum_probs=40.8
Q ss_pred hhccCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCC-CchHHHHHHHHHHHHHHcCChhHHHHhhccCCCCccc
Q 037661 89 AEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCS-SVGADTANKLINEAWEVLSDPKRREAYDLLMCFDKTV 164 (201)
Q Consensus 89 ~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~~~~~~ 164 (201)
....|||+||||++ +|+.++||+|||+|+++||||+++ .+.+.++|+.|++||++|+||.+|+.||++|..+...
T Consensus 18 ~~~~~~y~~lg~~~-~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~ 93 (780)
T 3apo_A 18 RHDQNFYSLLGVSK-TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED 93 (780)
T ss_dssp -----CHHHHTCCT-TCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-------
T ss_pred CCCCCHHHHcCCCC-CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccccc
Confidence 45679999999999 999999999999999999999985 4458899999999999999999999999999765443
No 34
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.56 E-value=7.2e-16 Score=106.89 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=50.2
Q ss_pred cCcchhccccCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHH
Q 037661 92 KSWYAVLGIRDHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRR 151 (201)
Q Consensus 92 ~d~Y~vLgv~~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR 151 (201)
.++|+||||++.+++.++||++||+|++++|||++.. .+.|+.|++||++|+|+..|
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~---~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS---PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC---HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHhhhhhc
Confidence 3789999999713999999999999999999999643 68999999999999988654
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.83 E-value=3.2e-09 Score=72.21 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=45.0
Q ss_pred cchhccccCCC---CCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCC
Q 037661 94 WYAVLGIRDHR---AGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSD 147 (201)
Q Consensus 94 ~Y~vLgv~~~~---as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd 147 (201)
-|.||||++ . ++.++|+++||+|....|||+... ......|++|+++|..
T Consensus 6 A~~ILgv~~-~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS---~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 6 SCKILNIEE-SKGDLNMDKINNRFNYLFEVNDKEKGGS---FYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHTTCCG-GGTCCSHHHHHHHHHHHHHHTCGGGTCC---HHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCC-CcCcCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHHHH
Confidence 378999999 8 999999999999999999999755 5788899999999864
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.63 E-value=6.8e-05 Score=70.35 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=39.2
Q ss_pred HhhhccCcchhccccCCCCCH--HHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH
Q 037661 87 LAAEKKSWYAVLGIRDHRAGV--DVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEV 144 (201)
Q Consensus 87 ~~~~~~d~Y~vLgv~~~~as~--~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~v 144 (201)
+....+|||.+||++. +... .+|+++||++++..+++ .+++..|..|+.|
T Consensus 624 ~~~~~~~~~~~lG~~~-~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 624 LKDNKASTNHILGFPF-TSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV 675 (681)
T ss_dssp HTSCCCSSSEETTEES-SHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred HHccCCCCcccCCCCC-ChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence 4566778999999987 4433 56999999999966554 5788889988876
No 37
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.15 E-value=0.018 Score=41.72 Aligned_cols=49 Identities=27% Similarity=0.330 Sum_probs=39.7
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
-++||+..+++..+ +..+++.|+|++|+..+.++..++|....+...+.
T Consensus 6 a~inP~~a~~~~~~------------G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 54 (126)
T 4gco_A 6 AYINPELAQEEKNK------------GNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRA 54 (126)
T ss_dssp -CCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHCHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHh
Confidence 35777777777777 99999999999999999999999999865544443
No 38
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.63 E-value=0.075 Score=40.19 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=44.9
Q ss_pred cccCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 15 SLSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 15 ~~~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
++..-..++|++..++... |..++..|++++|+..+.++..++|....+-..+.
T Consensus 24 ~l~~al~l~p~~~~~~~~l------------g~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg 77 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSY------------AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLA 77 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHhCCCHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3455667899999998888 99999999999999999999999998865544433
No 39
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.42 E-value=0.0059 Score=44.40 Aligned_cols=81 Identities=14% Similarity=0.064 Sum_probs=55.0
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHH--HhhhccCcchhc
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHK--LAAEKKSWYAVL 98 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~--~~~~~~d~Y~vL 98 (201)
.++|++..++..+ |..++..|++++|+..+.++..++|....+-..+..+.... .......|-++|
T Consensus 41 ~~~p~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 41 KRDPENAILYSNR------------AACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHH------------hhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4578888888888 99999999999999999999999998765544444433220 011223566677
Q ss_pred cccCCCCCHHHHHHHHHH
Q 037661 99 GIRDHRAGVDVIKKRYEA 116 (201)
Q Consensus 99 gv~~~~as~~eIkkaYrk 116 (201)
.+.| +..+++....+
T Consensus 109 ~l~P---~~~~a~~~l~~ 123 (126)
T 4gco_A 109 QVDP---SNEEAREGVRN 123 (126)
T ss_dssp HHCT---TCHHHHHHHHH
T ss_pred HHCc---CCHHHHHHHHH
Confidence 7777 44555555444
No 40
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.24 E-value=0.011 Score=43.85 Aligned_cols=42 Identities=2% Similarity=-0.057 Sum_probs=30.0
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
+|.+...+..+ |..++..|+|+.|+..+.++..++|....+.
T Consensus 59 ~~~~~~~~~nl------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 100 (162)
T 3rkv_A 59 DRKNIPLYANM------------SQCYLNIGDLHEAEETSSEVLKREETNEKAL 100 (162)
T ss_dssp HHTHHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHH------------HHHHHhcCcHHHHHHHHHHHHhcCCcchHHH
Confidence 56666666666 7777777777777777777777777765443
No 41
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.95 E-value=0.28 Score=35.33 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=42.6
Q ss_pred cccCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 15 SLSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 15 ~~~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
++.....++|++..++... |..++..|++++|+..+.++..++|....+...+
T Consensus 6 ~l~~al~~~p~~~~~~~~~------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 58 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYAL------------GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGL 58 (142)
T ss_dssp ---CCTTCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHH------------HHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4566677889988888888 9999999999999999999999999886554333
No 42
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.79 E-value=0.22 Score=35.71 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
.+.|.....++..+++.|+|++|+..|.+|..++|....+-..+
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nl 48 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNK 48 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhH
Confidence 46677888899999999999999999999999999876544333
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.74 E-value=0.12 Score=40.19 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=33.4
Q ss_pred CCCCCChhh-HHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 18 SSPFNNPEA-REALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 18 ~~~~~~p~~-~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
.....+|.. ...+... |..++..|+++.|+..+.++..+.|....+.
T Consensus 27 ~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 74 (252)
T 2ho1_A 27 LKTDKGRDEARDAYIQL------------GLGYLQRGNTEQAKVPLRKALEIDPSSADAH 74 (252)
T ss_dssp ----CCHHHHHHHHHHH------------HHHHHHTTCTGGGHHHHHHHHHHCTTCHHHH
T ss_pred cccccchHHHHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhcCCChHHHH
Confidence 345567776 5666666 8888899999999999999988888765433
No 44
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.11 Score=36.46 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
+...|..++..|+|++|+..+.++..++|....+...+.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a 45 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 45 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 344477788888888888888888888877654443333
No 45
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.45 E-value=0.51 Score=34.68 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=41.4
Q ss_pred ccCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 16 LSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 16 ~~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
+.....++|++..++... |..++..|++++|+..+.++..++|....+...+
T Consensus 10 ~~~al~~~p~~~~~~~~~------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 61 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSL------------AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61 (148)
T ss_dssp HHHHTTCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCHhhHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHH
Confidence 344456778877777777 9999999999999999999999999886554333
No 46
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.34 E-value=0.11 Score=38.39 Aligned_cols=51 Identities=8% Similarity=-0.062 Sum_probs=37.5
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY 82 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 82 (201)
...+|++..+++.- |..++..|+|+.|+..+.++..++|....+...+..+
T Consensus 24 ~~~~p~~~~~~~~l------------a~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 74 (150)
T 4ga2_A 24 TPSPRQKSIKGFYF------------AKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLL 74 (150)
T ss_dssp SCSHHHHHTTHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccCcccHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34566666666666 8888888888888888888888888876655554443
No 47
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.17 E-value=0.4 Score=35.22 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=35.8
Q ss_pred hCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 34 LADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 34 ~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
.+.+.+.....+|..++..|+++.|+..+.++..++|....+.
T Consensus 60 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 102 (150)
T 4ga2_A 60 VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLV 102 (150)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHH
Confidence 3555566777788899999999999999999999999986543
No 48
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.44 Score=31.78 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
.++.+..+|..++..|++++|+..+.++..+.|....+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 41 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGY 41 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 345667779999999999999999999999999875443
No 49
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.05 E-value=0.055 Score=37.22 Aligned_cols=47 Identities=21% Similarity=0.368 Sum_probs=37.0
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
.+|++..++... |..++..|++++|+..+.++..++|....+...+.
T Consensus 2 ~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 48 (100)
T 3ma5_A 2 EDPEDPFTRYAL------------AQEHLKHDNASRALALFEELVETDPDYVGTYYHLG 48 (100)
T ss_dssp ---CCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred CCccCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 367777777777 99999999999999999999999998765444333
No 50
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.02 E-value=0.16 Score=38.28 Aligned_cols=48 Identities=13% Similarity=-0.086 Sum_probs=37.7
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC 81 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~ 81 (201)
++|++..++... +..++..|++++|+..|.++..++|....+.-.+..
T Consensus 65 ~~P~~~~~~~~l------------g~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 65 YDFYNVDYIMGL------------AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred hCCCCHHHHHHH------------HHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 356666666655 999999999999999999999999998655444433
No 51
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=94.99 E-value=0.72 Score=33.74 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
.+..+..+|..++..|+|++|+..+.++..++|....+...+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 52 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRA 52 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHH
Confidence 3444455599999999999999999999999998755443333
No 52
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.58 Score=32.46 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHH
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYE 115 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYr 115 (201)
.+.+.-...+|..++..|++++|+..+.++..++|....+...+..+... +| ..++-...|+
T Consensus 35 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------------~~------~~~~A~~~~~ 96 (126)
T 3upv_A 35 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA------------VK------EYASALETLD 96 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------TT------CHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------------Hh------CHHHHHHHHH
Confidence 33445566788889999999999999999999999876443333222211 11 2344555555
Q ss_pred HHHHhhCCCCCCCchHHHHHHHHHHHHHHc
Q 037661 116 ALVQLFKPDRCSSVGADTANKLINEAWEVL 145 (201)
Q Consensus 116 kla~~~HPDk~~~~~a~~~f~~i~~Ay~vL 145 (201)
+. +...|+....+........+..+...|
T Consensus 97 ~a-l~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 97 AA-RTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HH-HHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HH-HHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 53 445555444444566666666665543
No 53
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=94.81 E-value=0.071 Score=39.41 Aligned_cols=34 Identities=12% Similarity=0.012 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 43 KHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 43 ~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
..+|..++..|++++|+..+.++..++|....+.
T Consensus 49 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 82 (164)
T 3sz7_A 49 SNRAAAYSASGQHEKAAEDAELATVVDPKYSKAW 82 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3448899999999999999999999999875443
No 54
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.59 E-value=0.06 Score=37.67 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=18.7
Q ss_pred HHHHHhcCC---HHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 46 AEELFKEEK---IDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 46 A~~~l~~~d---~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
|+.++..++ .+.|...+.+|..++|......-++.
T Consensus 13 a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg 50 (93)
T 3bee_A 13 ATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIA 50 (93)
T ss_dssp HHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 555544443 45666666666666665554444443
No 55
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=94.56 E-value=0.69 Score=38.92 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=36.1
Q ss_pred CCCCCCCcccCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 8 SSSSSSSSLSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 8 ~~~~~~~~~~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
+++.....+..-...+|++...+... |..++..|+++.|+..+.++...+|....+.
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~------------~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 63 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSMADVEKHLEL------------GKKLLAAGQLADALSQFHAAVDGDPDNYIAY 63 (450)
T ss_dssp ----------------CHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccccccccccccccccHHHHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCCccHHHH
Confidence 33334444455556688888888888 9999999999999999999999999875443
No 56
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=94.54 E-value=0.12 Score=35.67 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=40.6
Q ss_pred cccCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 15 SLSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 15 ~~~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
.....+...|....++... |..++..|+++.|+..+.++..++|....+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 52 (133)
T 2lni_A 4 HHHHHSHMNPDLALMVKNK------------GNECFQKGDYPQAMKHYTEAIKRNPKDAKL 52 (133)
T ss_dssp CCCTTCCSSSCHHHHHHHH------------HHHHHHTTCSHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCCCCcCcccHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 3444555678888898888 999999999999999999999999977433
No 57
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=94.25 E-value=0.04 Score=43.08 Aligned_cols=50 Identities=12% Similarity=-0.026 Sum_probs=42.2
Q ss_pred CCChhhHHHH----HHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661 21 FNNPEAREAL----FSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY 82 (201)
Q Consensus 21 ~~~p~~~~~~----~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 82 (201)
.++|++.+++ ..+ +..+...|++++|+..|.+|..+.|.+.++..-+..+
T Consensus 92 e~~pd~~~A~~~~~~~r------------G~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSR------------ALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp CTTSTHHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred cCCCchHHHHHHHHHhH------------HHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 4588998888 888 9999999999999999999999999886655444443
No 58
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.02 E-value=0.14 Score=36.46 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=20.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
|..+++.|++++|+..+.++..++|....+...+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 57 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL 57 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 6666666666666666666666666654443333
No 59
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.01 E-value=0.23 Score=32.06 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=23.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
|..++..|+++.|+..+.++..+.|....+.
T Consensus 16 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 46 (91)
T 1na3_A 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAW 46 (91)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 7778888888888888888888887765443
No 60
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=93.78 E-value=0.88 Score=29.83 Aligned_cols=41 Identities=7% Similarity=0.163 Sum_probs=33.7
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
+|++...+... |..++..|++++|+..+.++..+.|....+
T Consensus 2 ~p~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 42 (112)
T 2kck_A 2 VDQNPEEYYLE------------GVLQYDAGNYTESIDLFEKAIQLDPEESKY 42 (112)
T ss_dssp CCSSTTGGGGH------------HHHHHSSCCHHHHHHHHHHHHHHCCCCHHH
T ss_pred CCCcHHHHHHH------------HHHHHHhhhHHHHHHHHHHHHHhCcCCHHH
Confidence 55666666666 999999999999999999999999987543
No 61
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=93.77 E-value=0.15 Score=35.64 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=37.2
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC 81 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~ 81 (201)
+|++..++... |..++..|++++|+..+.++..++|....+...+..
T Consensus 23 ~p~~~~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 69 (117)
T 3k9i_A 23 GKDLAECYLGL------------GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69 (117)
T ss_dssp HHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CccHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 45555555555 999999999999999999999999998655444443
No 62
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.76 E-value=0.23 Score=33.09 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
..|..++..|++++|+..+.++..++|....
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 35 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKD 35 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Confidence 3455555666666666666666666655543
No 63
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=93.70 E-value=0.03 Score=47.62 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=15.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC 81 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~ 81 (201)
|..++..|++++|+..+.++..++|....+...+..
T Consensus 271 g~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~ 306 (338)
T 2if4_A 271 GKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA 306 (338)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 666666666666666666666666665544444433
No 64
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.66 E-value=0.41 Score=39.45 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=26.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
+|..++..|++++|...+.++..++|....+
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4667889999999999999999999987654
No 65
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=93.51 E-value=0.11 Score=38.44 Aligned_cols=86 Identities=8% Similarity=0.059 Sum_probs=54.7
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHH--HhhhccCcchhcc
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHK--LAAEKKSWYAVLG 99 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~--~~~~~~d~Y~vLg 99 (201)
++|++..++... |..++..|++++|+..+.++..++|....+...+..+.... .......|-++|.
T Consensus 50 ~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 50 LDHYDSRFFLGL------------GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578888888888 99999999999999999999999998865544444333220 0011123445666
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q 037661 100 IRDHRAGVDVIKKRYEALVQ 119 (201)
Q Consensus 100 v~~~~as~~eIkkaYrkla~ 119 (201)
+.+......+++.....+..
T Consensus 118 ~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 118 LIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp HHTTCGGGHHHHHHHHHHHH
T ss_pred HCcCCCcchHHHHHHHHHHH
Confidence 65512333445544444433
No 66
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.41 E-value=0.2 Score=35.23 Aligned_cols=81 Identities=11% Similarity=-0.006 Sum_probs=49.7
Q ss_pred CChhh---HHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHH--HhhhccCcch
Q 037661 22 NNPEA---REALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHK--LAAEKKSWYA 96 (201)
Q Consensus 22 ~~p~~---~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~--~~~~~~d~Y~ 96 (201)
++|++ ...+... |..++..|+++.|+..+.++..++|....+...+..+.... .......|-+
T Consensus 57 ~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 57 LDATPQDQAVLHRNR------------AACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp SCCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HcccchHHHHHHHHH------------HHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45665 6666666 89999999999999999999999998754443333332220 0011123445
Q ss_pred hccccCCCCCHHHHHHHHHHH
Q 037661 97 VLGIRDHRAGVDVIKKRYEAL 117 (201)
Q Consensus 97 vLgv~~~~as~~eIkkaYrkl 117 (201)
+|.+.+ ...++...+.++
T Consensus 125 al~~~p---~~~~~~~~l~~~ 142 (148)
T 2dba_A 125 CVSLEP---KNKVFQEALRNI 142 (148)
T ss_dssp HHHHCS---SCHHHHHHHHHH
T ss_pred HHHcCC---CcHHHHHHHHHH
Confidence 666655 344455555444
No 67
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=93.39 E-value=0.2 Score=36.81 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=35.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCch-hHHhhHHHHHHH
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQ-GLNSHFACYVVH 85 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~v~ 85 (201)
+|..++..|+++.|+..+.++..++|... .+...+..+...
T Consensus 103 ~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 103 RAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 39999999999999999999999999987 667777766654
No 68
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.38 E-value=0.22 Score=34.30 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=36.3
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
++|++..++... |..++..|++++|+..+.++..++|....+...+
T Consensus 14 ~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 59 (115)
T 2kat_A 14 QGTDNMLLRFTL------------GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWL 59 (115)
T ss_dssp TTCCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCcHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 456666655555 9999999999999999999999999875444333
No 69
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=93.25 E-value=0.29 Score=37.18 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=14.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
|..++..|+++.|+..+.++..++|..
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~p~~ 121 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKIDKNN 121 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCccc
Confidence 555555555555555555555555544
No 70
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=93.17 E-value=1.4 Score=30.43 Aligned_cols=39 Identities=26% Similarity=0.208 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
+..+|..++..|+|+.|+..+.++..++|....+...+.
T Consensus 12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 50 (137)
T 3q49_B 12 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRA 50 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHH
Confidence 333499999999999999999999999998765443333
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=93.17 E-value=1.8 Score=31.69 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=14.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
|..++..|++++|+..++++.+++|..
T Consensus 12 G~~~~~~g~~~~A~~~~~~al~~~p~~ 38 (184)
T 3vtx_A 12 GDKKRTKGDFDGAIRAYKKVLKADPNN 38 (184)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 455555555555555555555555544
No 72
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=93.16 E-value=0.23 Score=35.79 Aligned_cols=36 Identities=11% Similarity=-0.023 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
.+|..++..|+++.|+..+.++..++|....+.-.+
T Consensus 57 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 57 GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 348999999999999999999999999886554333
No 73
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=93.12 E-value=0.3 Score=32.70 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
...+|..++..|++++|+..+.++..++|..
T Consensus 41 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 41 YSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 3344999999999999999999999999987
No 74
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=92.95 E-value=0.24 Score=34.48 Aligned_cols=41 Identities=7% Similarity=0.100 Sum_probs=33.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH 85 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~ 85 (201)
+|..++..|++++|+..+.++..+.|....+......+...
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 48899999999999999999999999988776655554433
No 75
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=92.84 E-value=0.38 Score=33.15 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=24.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
|..++..|++++|+..+.++...+|..
T Consensus 46 g~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 46 GESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 888889999999999999999888887
No 76
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=92.75 E-value=0.26 Score=42.49 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=25.7
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
++|.+...+... |..++..|++++|+..+.+|..++|....
T Consensus 268 ~~~~~~~~~~nl------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 308 (370)
T 1ihg_A 268 LQPVALSCVLNI------------GACKLKMSDWQGAVDSCLEALEIDPSNTK 308 (370)
T ss_dssp GHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHH------------HHHHHhccCHHHHHHHHHHHHHhCchhHH
Confidence 455666666555 66666666666666666666666665543
No 77
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=92.69 E-value=0.2 Score=38.83 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=26.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
|..++..|++++|+..++++..++|....+...+.
T Consensus 95 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 129 (208)
T 3urz_A 95 AEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129 (208)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 77788888888888888888888887755443333
No 78
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=92.66 E-value=0.35 Score=32.12 Aligned_cols=47 Identities=13% Similarity=-0.009 Sum_probs=37.1
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
++|++...+... |..++..|+++.|+..+.++..++|....+...+.
T Consensus 33 ~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 33 LDPHNHVLYSNR------------SAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HCCCcHHHHHHH------------HHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 356777777777 88999999999999999999999998755444433
No 79
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=92.65 E-value=0.35 Score=38.83 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=19.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
|..++..|+++.|+..+.++..++|....+
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 308 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNA 308 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccHHH
Confidence 666666677777777777766666655433
No 80
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=92.63 E-value=0.22 Score=42.01 Aligned_cols=31 Identities=16% Similarity=0.054 Sum_probs=23.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
|..++..|++++|+..+.++..++|....+.
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 233 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGL 233 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 7778888888888888888888887764443
No 81
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=92.61 E-value=0.081 Score=38.08 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=34.3
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
++|++..++..+ |..++..|+|++|+.++.++..+.|....
T Consensus 37 ~~p~~~~~~~nl------------g~~~~~~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 37 LDPSNITFYNNK------------AAVYFEEKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hCCCCHHHHHhH------------HHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence 466776666666 99999999999999999999999886543
No 82
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=92.32 E-value=0.88 Score=30.04 Aligned_cols=40 Identities=23% Similarity=0.122 Sum_probs=33.8
Q ss_pred HHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 37 KEAE-ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 37 ~ea~-~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
+.+. ....+|..++..|++++|+..+.++..++|....+.
T Consensus 32 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 32 VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3445 677788899999999999999999999999986554
No 83
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=92.22 E-value=0.18 Score=44.55 Aligned_cols=30 Identities=17% Similarity=0.044 Sum_probs=22.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
|..++..|+|+.|+..+.+|..++|....+
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a 353 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLDSANEKG 353 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Confidence 777777777777777777777777766433
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=92.09 E-value=2 Score=40.63 Aligned_cols=115 Identities=14% Similarity=0.155 Sum_probs=67.3
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH---------------H
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH---------------K 86 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~---------------~ 86 (201)
..|++.+++... |..++..|++++|+..|++|.+++|....+...+..+... .
T Consensus 4 s~P~~a~al~nL------------G~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~ 71 (723)
T 4gyw_A 4 SCPTHADSLNNL------------ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71 (723)
T ss_dssp --CHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357777777777 9999999999999999999999999875443333322111 0
Q ss_pred HhhhccCcchhcccc--CCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhH-HHHhhc
Q 037661 87 LAAEKKSWYAVLGIR--DHRAGVDVIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKR-REAYDL 156 (201)
Q Consensus 87 ~~~~~~d~Y~vLgv~--~~~as~~eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~k-R~~YD~ 156 (201)
+.....+.|-.||.- . .-..++-.+.|++ ++..+|+. .+.+..+..+|..+++... ...|.+
T Consensus 72 l~P~~~~a~~nLg~~l~~-~g~~~~A~~~~~k-Al~l~P~~------~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 72 ISPTFADAYSNMGNTLKE-MQDVQGALQCYTR-AIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp HCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHH-HHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHH-HHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 000111222233321 1 1133444455555 45667764 4677788889998887543 344443
No 85
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=91.90 E-value=0.61 Score=31.41 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=31.9
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHh
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNS 77 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~ 77 (201)
+|++...+... |..++..|+++.|+..+.++..+.|....+..
T Consensus 42 ~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 42 NPANAVYFCNR------------AAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp CTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCHHHHHHH------------HHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 56666666666 88888888888888888888888887654433
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=91.90 E-value=1.7 Score=41.18 Aligned_cols=43 Identities=23% Similarity=0.113 Sum_probs=31.3
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
.++|++..++... |..+++.|++++|+..|++|.+++|....+
T Consensus 37 ~l~P~~~~a~~nL------------g~~l~~~g~~~eA~~~~~~Al~l~P~~~~a 79 (723)
T 4gyw_A 37 EVFPEFAAAHSNL------------ASVLQQQGKLQEALMHYKEAIRISPTFADA 79 (723)
T ss_dssp HHCSCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3577777777776 777777777777777777777777776433
No 87
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=91.77 E-value=0.62 Score=32.42 Aligned_cols=38 Identities=16% Similarity=0.030 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
+..+|..++..|+++.|+..+.++..++|....+...+
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 46 YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 33448889999999999999999999999875443333
No 88
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=91.70 E-value=2 Score=28.74 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
.+..+..+|..++..|+++.|+..+.++..++|....+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 41 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYI 41 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH
Confidence 456677789999999999999999999999999875443
No 89
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=91.70 E-value=0.2 Score=38.97 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=37.0
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKE-----------EKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~-----------~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
.+||++..++... +..+... |++++|+..|++|..++|........+.
T Consensus 74 ~ldP~~~~A~~~L------------G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 74 LIDPKKDEAVWCI------------GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHCTTCHHHHHHH------------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCcCcHHHHHHH------------HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4567777777766 7777766 5999999999999999999865544444
No 90
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=91.64 E-value=0.4 Score=37.33 Aligned_cols=45 Identities=24% Similarity=0.208 Sum_probs=34.9
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhh
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSH 78 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~ 78 (201)
++|++..++... |..++..|++++|+..+.++..++|....+...
T Consensus 34 ~~p~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 34 ENPQDPEALYWL------------ARTQLKLGLVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp TSSSCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 456666666665 888999999999999999999999987544433
No 91
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=91.60 E-value=0.37 Score=35.67 Aligned_cols=28 Identities=11% Similarity=0.009 Sum_probs=14.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
|..++..|++++|+..++++..++|...
T Consensus 114 g~~~~~~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 114 GLVYDSMGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence 4455555555555555555555555443
No 92
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=91.58 E-value=0.43 Score=35.23 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=16.8
Q ss_pred HHH-HHhcCCH--HHHHHHHHHHHHhCCCchhH
Q 037661 46 AEE-LFKEEKI--DSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 46 A~~-~l~~~d~--~~A~~~~~~a~~~~p~~~~~ 75 (201)
|.. ++..|++ +.|+..+.++..++|....+
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 117 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHH
Confidence 555 4555555 66666666666666555433
No 93
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=91.54 E-value=2.6 Score=29.59 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHh
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNS 77 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~ 77 (201)
+..+|..++..|++++|+..+.++..++|....+..
T Consensus 54 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 89 (121)
T 1hxi_A 54 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 89 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 344566788999999999999999999999865443
No 94
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=91.46 E-value=1.6 Score=29.76 Aligned_cols=30 Identities=23% Similarity=0.112 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
..|..++..|++++|+..+.++...+|...
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 36 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGV 36 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSST
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCc
Confidence 348999999999999999999999999886
No 95
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=91.42 E-value=3.3 Score=33.52 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
..+...|..++..|++++|+..+.++..++|....+...+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 45 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRA 45 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 34455599999999999999999999999998755444333
No 96
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=91.41 E-value=0.56 Score=30.83 Aligned_cols=31 Identities=10% Similarity=0.002 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
.+..+|..++..|+++.|+..+.++..+.|.
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3455689999999999999999999999998
No 97
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=91.41 E-value=0.56 Score=32.01 Aligned_cols=48 Identities=17% Similarity=0.040 Sum_probs=37.5
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
.++|++...+... |..++..|++++|+..+.++..++|....+...+.
T Consensus 44 ~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 44 KRNPKDAKLYSNR------------AACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp TTCTTCHHHHHHH------------HHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HcCCCcHHHHHHH------------HHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3577787777777 88899999999999999999999988754444433
No 98
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=91.11 E-value=0.22 Score=34.02 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=25.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+|..++..|++++|+..+.++..+.|...
T Consensus 47 lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 47 LGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 39999999999999999999999877543
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=91.08 E-value=2.5 Score=33.13 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
.-+.....+|..++..|+++.|+..+.++...+|....
T Consensus 146 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 183 (261)
T 3qky_A 146 KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW 183 (261)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence 33445578899999999999999999999999998653
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=91.05 E-value=0.57 Score=36.13 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=31.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
+|..++..|++++|+..+.++..++|....+...+.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 95 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACA 95 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 699999999999999999999999999865544443
No 101
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=90.97 E-value=0.61 Score=30.86 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
.+..+...|..++..|+++.|+..+.++..++|....+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 41 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLY 41 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH
Confidence 456677779999999999999999999999999875443
No 102
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=90.82 E-value=0.99 Score=28.83 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC 81 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~ 81 (201)
+.-+..+|..++..|++++|+..+.++..++|....+...+..
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3445567788999999999999999999999988655444433
No 103
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=90.59 E-value=0.87 Score=32.40 Aligned_cols=47 Identities=17% Similarity=-0.041 Sum_probs=37.6
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
++|++...+... |..++..|+++.|+..+.++..++|....+...+.
T Consensus 42 ~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a 88 (166)
T 1a17_A 42 LNPSNAIYYGNR------------SLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 88 (166)
T ss_dssp HSTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hCCCChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 366777777777 99999999999999999999999998755444433
No 104
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=90.54 E-value=0.9 Score=30.94 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
+.+..++.+++.|++++|...+-+|...+|....+-.++
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 368899999999999999999999999999987554444
No 105
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.39 E-value=3.2 Score=28.65 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=37.8
Q ss_pred cCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 17 SSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 17 ~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
......+|.....+... |..++..|+++.|+..+.++..++|..
T Consensus 18 ~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~a~~~~~~~ 61 (148)
T 2dba_A 18 PRPATPGASSVEQLRKE------------GNELFKCGDYGGALAAYTQALGLDATP 61 (148)
T ss_dssp CCCCCTTCCCHHHHHHH------------HHHHHTTTCHHHHHHHHHHHHTSCCCH
T ss_pred CcCCccchHHHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHHcccc
Confidence 34455677788888877 999999999999999999999999986
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=90.30 E-value=0.93 Score=36.98 Aligned_cols=62 Identities=21% Similarity=0.184 Sum_probs=50.7
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY 82 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 82 (201)
..+++.+..++.+.-.+.+...+..|..++..|++++|+..+.++..++|....+...+..+
T Consensus 99 ~~~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 160 (287)
T 3qou_A 99 PQPEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAET 160 (287)
T ss_dssp CCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence 45666777777776777778889999999999999999999999999999987665555543
No 107
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=90.06 E-value=1.2 Score=29.54 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=23.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
|..++..|+++.|+..+.++..+.|....+
T Consensus 50 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 79 (125)
T 1na0_A 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEA 79 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHH
Confidence 778888888888888888888888776443
No 108
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=89.75 E-value=0.99 Score=34.85 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH 85 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~ 85 (201)
.+.+.-+|..+++.|+|+.|++.++++.++.|....+..+...++..
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~ 117 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 117 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 45667779999999999999999999999999998777777766654
No 109
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=89.20 E-value=4.3 Score=33.85 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC 81 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~ 81 (201)
..+..+|..++..|++++|+..+.++..++|....+...+..
T Consensus 231 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 231 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 344556778899999999999999999999988755444443
No 110
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=88.89 E-value=4.9 Score=30.87 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=27.8
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 46 AEELFKE-----------EKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 46 A~~~l~~-----------~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
+..++.. |++++|+..+.++..++|....+...+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 124 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 7778888 999999999999999999876544333
No 111
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=88.88 E-value=3.9 Score=34.95 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHH
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVV 84 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v 84 (201)
.+|..++..|++++|+..+++|.+++|....+...+..+..
T Consensus 312 ~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 312 RRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33899999999999999999999999988766655555443
No 112
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=88.52 E-value=1.1 Score=34.25 Aligned_cols=28 Identities=4% Similarity=0.039 Sum_probs=19.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
|..++..|++++|+..+.++..++|...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~ 110 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNA 110 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 6666777777777777777777777655
No 113
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=88.49 E-value=1.2 Score=31.78 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=39.4
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
|++..++++.+ .+..++.++..|+++.|+..+-+|...+|....+-.++
T Consensus 12 d~e~~e~~Fl~--------eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~ 60 (95)
T 1om2_A 12 DAEAVQKFFLE--------EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 60 (95)
T ss_dssp SHHHHHHHHHH--------HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHH--------HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55666666655 68899999999999999999999999999986554333
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=88.44 E-value=1 Score=33.50 Aligned_cols=32 Identities=13% Similarity=-0.027 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
-....|..++..|++++|+..+.++.+++|..
T Consensus 110 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 110 LACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 33445778888888888888888888888865
No 115
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=87.99 E-value=0.62 Score=31.92 Aligned_cols=31 Identities=10% Similarity=-0.009 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
+..+|..++..|++++|+..+.++..+.|..
T Consensus 56 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 56 WKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 3445889999999999999999999988754
No 116
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=87.92 E-value=0.94 Score=33.29 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHh
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNS 77 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~ 77 (201)
.+.-+..+|..++..|+++.|+..+.++..++|....+..
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 82 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYA 82 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3344555699999999999999999999999998754433
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=87.92 E-value=1.4 Score=33.10 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=17.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
+|..++..|++++|+..+.++..+.|..
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~ 104 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGN 104 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCc
Confidence 3566666666666666666666666654
No 118
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=87.86 E-value=0.68 Score=35.93 Aligned_cols=37 Identities=16% Similarity=-0.032 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
..+|..++..+..++..|+|++|+..|.+|.++.|..
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~ 44 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM 44 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC
Confidence 4578899999999999999999999999999999983
No 119
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=87.57 E-value=7.3 Score=34.50 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=31.0
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
..++|++..++... |..++..|++++|+..++++..++|....+.
T Consensus 16 l~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 60 (568)
T 2vsy_A 16 VRHRPQDFVAWLML------------ADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60 (568)
T ss_dssp -----CCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHTTSTTCHHHH
T ss_pred HHhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34566666666555 8888888888888888888888888775443
No 120
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=87.40 E-value=0.87 Score=34.72 Aligned_cols=48 Identities=23% Similarity=0.192 Sum_probs=36.3
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY 82 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 82 (201)
+|.+...+... |..++..|+++.|+..+.++..+.|....+...+..+
T Consensus 169 ~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 216 (258)
T 3uq3_A 169 APEDARGYSNR------------AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216 (258)
T ss_dssp CTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcccHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 56666666666 8888899999999999999999888876665555443
No 121
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=87.06 E-value=11 Score=33.34 Aligned_cols=36 Identities=14% Similarity=0.334 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
.+|..++..|++++|+..++++..++|....+...+
T Consensus 62 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 97 (568)
T 2vsy_A 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL 97 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 348899999999999999999999999875444333
No 122
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=87.05 E-value=7.8 Score=28.89 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
...+..+...|..++..|+|+.|+..+.++..+.|...
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~ 72 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE 72 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 34567788889999999999999999999999988764
No 123
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.88 E-value=1.4 Score=33.40 Aligned_cols=46 Identities=13% Similarity=-0.012 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH 85 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~ 85 (201)
+.+.-+|..+++.|+|..|++++....++.|....+..+...++-.
T Consensus 79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~k 124 (134)
T 3o48_A 79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDK 124 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 5567789999999999999999999999999998887777766654
No 124
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=86.62 E-value=5 Score=37.12 Aligned_cols=38 Identities=11% Similarity=-0.114 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
...+|..++..|++++|+..+.++..++|....+...+
T Consensus 436 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 473 (681)
T 2pzi_A 436 PLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYR 473 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHH
Confidence 33446678899999999999999999999885544333
No 125
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=86.47 E-value=8.2 Score=33.72 Aligned_cols=36 Identities=17% Similarity=0.028 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
+.+..+...+..++..|+|+.|+..|.+|..++|..
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~ 301 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME 301 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc
Confidence 445556666999999999999999999999999987
No 126
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=86.22 E-value=9.7 Score=29.18 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
...+|..++..|+|++|+..+.++..++|....+
T Consensus 44 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~ 77 (225)
T 2yhc_A 44 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 77 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence 4445888889999999999999999999987643
No 127
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=86.13 E-value=10 Score=29.41 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=24.9
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
.++|++..+++.. |..++..|+|++|+..+.++...+|..
T Consensus 9 ~~~~~~~~~~~~~------------a~~~~~~g~~~~A~~~~~~~l~~~p~~ 48 (261)
T 3qky_A 9 RLRHSSPQEAFER------------AMEFYNQGKYDRAIEYFKAVFTYGRTH 48 (261)
T ss_dssp --CCSSHHHHHHH------------HHHHHHTTCHHHHHHHHHHHGGGCSCS
T ss_pred CCCCCCHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 3566666777666 666666666666666666666666655
No 128
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=86.03 E-value=9.2 Score=28.74 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+.+++.+..+|..++..|+++.|+..+.++..++ ...
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~ 38 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI 38 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH
Confidence 4677888888999999999999999999999998 443
No 129
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=86.00 E-value=8.6 Score=30.94 Aligned_cols=29 Identities=17% Similarity=0.013 Sum_probs=21.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
|..++..|+++.|+..+.++..+.|....
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 252 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYL 252 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 77777777777777777777777776543
No 130
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=85.95 E-value=1.7 Score=35.33 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
.....+|..++..|++++|+..+.++.+.+|..
T Consensus 220 ~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 220 ALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 344455889999999999999999999999987
No 131
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=85.88 E-value=2.2 Score=31.91 Aligned_cols=46 Identities=11% Similarity=-0.003 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH 85 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~ 85 (201)
+.+.-+|..+++.|+|..|++++....++.|....+..+...++-.
T Consensus 75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 75 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 120 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4556679999999999999999999999999998777766655543
No 132
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=85.82 E-value=3.4 Score=27.58 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV 83 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 83 (201)
+.-+..+|..++..|+++.|+..+.++..+.|.. .+...+..+.
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~ 122 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-DVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence 3445666889999999999999999999999954 3444444433
No 133
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=85.41 E-value=3.6 Score=35.22 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661 35 ADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC 81 (201)
Q Consensus 35 n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~ 81 (201)
..+.++.+...|..++..|++++|+..+.++..++|....+...+..
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 67 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISA 67 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 34467888889999999999999999999999999988654444433
No 134
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=85.35 E-value=13 Score=30.01 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
.-+..++..++..|++++|+..+.++..++|....+
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 249 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 344556888899999999999999999999987543
No 135
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=84.78 E-value=2.4 Score=37.64 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=30.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY 82 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 82 (201)
+|..++..|++++|+..++++..+.|....+...+..+
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 37888899999999999999999998876665555544
No 136
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=83.68 E-value=14 Score=28.85 Aligned_cols=39 Identities=23% Similarity=0.163 Sum_probs=25.8
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+|++...+... |..++..|++++|+..+.++..++|...
T Consensus 168 ~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 206 (327)
T 3cv0_A 168 NPNDAQLHASL------------GVLYNLSNNYDSAAANLRRAVELRPDDA 206 (327)
T ss_dssp STTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCCHHHHHHH------------HHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 45555555555 6667777777777777777777776653
No 137
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=83.63 E-value=4.4 Score=27.79 Aligned_cols=43 Identities=16% Similarity=0.344 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV 83 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 83 (201)
-....|..+++.|+++.|+..++++..+.|....+..-+..++
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~ 90 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFE 90 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHH
Confidence 3456688899999999999999999999999976644444333
No 138
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=83.55 E-value=3.1 Score=30.76 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=19.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
|..++..|+++.|+..+.++..++|...
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 42 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDPKNE 42 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCccch
Confidence 6667777777777777777776666553
No 139
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=83.38 E-value=13 Score=28.32 Aligned_cols=43 Identities=9% Similarity=-0.136 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
..+.-+..+|..++..|+++.|+..+.++..++|....+...+
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 83 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL 83 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 3445556669999999999999999999999999875444333
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=83.16 E-value=9.6 Score=26.62 Aligned_cols=40 Identities=28% Similarity=0.309 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
+.+..+..+|..++..|+++.|+..+.++..+.|....+.
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 50 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYY 50 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Confidence 4567778889999999999999999999999999875443
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=83.09 E-value=1.7 Score=35.23 Aligned_cols=30 Identities=20% Similarity=0.059 Sum_probs=23.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
|..++..|++++|+..+.++..++|....+
T Consensus 45 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 74 (281)
T 2c2l_A 45 ALCYLKMQQPEQALADCRRALELDGQSVKA 74 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence 777888888888888888888888876433
No 142
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=83.05 E-value=2.6 Score=32.45 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
.+|..++..|++++|+..+.++..++|....+
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 113 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 113 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCccccHH
Confidence 34667888888888888888888888876443
No 143
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=82.99 E-value=2.3 Score=32.94 Aligned_cols=46 Identities=13% Similarity=0.009 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH 85 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~ 85 (201)
+....++..+...|++++|+..+.++..++|....+.+.+..+...
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 4455578899999999999999999999999998887777665443
No 144
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=82.73 E-value=0.41 Score=35.70 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
..|..++..|++++|+..+.++..++|....
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~ 41 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGD 41 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Confidence 3355555555555555555555555555433
No 145
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=82.66 E-value=2.3 Score=32.47 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=25.5
Q ss_pred hcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661 51 KEEKIDSALCVVDRARMKNPNHQGLNSHFACY 82 (201)
Q Consensus 51 ~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 82 (201)
..+++++|+..++++..+.|....+..++..+
T Consensus 192 ~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 192 ADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 33445999999999999999998777766554
No 146
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=82.62 E-value=14 Score=28.20 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
.+..|..++..|+++.|+..+.++..++|....+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 40 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIY 40 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Confidence 45569999999999999999999999999875443
No 147
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=82.47 E-value=13 Score=27.51 Aligned_cols=35 Identities=6% Similarity=-0.093 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
-+..+|..++..|++++|+..+.++..++|....+
T Consensus 39 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 73 (213)
T 1hh8_A 39 ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 73 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 34455888899999999999999999998876543
No 148
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=82.42 E-value=2.1 Score=37.02 Aligned_cols=29 Identities=10% Similarity=0.075 Sum_probs=20.3
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHhCCCch
Q 037661 45 MAEELFKEEK-IDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 45 ~A~~~l~~~d-~~~A~~~~~~a~~~~p~~~ 73 (201)
++..++..|+ +++|+.++.++..++|...
T Consensus 137 ~g~~l~~~g~d~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 137 RRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence 3556666774 7777777777777777663
No 149
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=82.42 E-value=8.7 Score=32.40 Aligned_cols=95 Identities=15% Similarity=0.071 Sum_probs=54.6
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHH
Q 037661 42 SKHMAEELFK---EEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALV 118 (201)
Q Consensus 42 ~~~~A~~~l~---~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla 118 (201)
+..+|..++. .|+++.|+..+.++..+.|....+...+..+... +| ..++-...|++ +
T Consensus 415 ~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~------------~g------~~~~A~~~~~~-a 475 (514)
T 2gw1_A 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ------------QE------DIDEAITLFEE-S 475 (514)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------TT------CHHHHHHHHHH-H
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH------------hc------CHHHHHHHHHH-H
Confidence 3445667777 9999999999999999999876443333222211 11 23334444444 4
Q ss_pred HhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 119 QLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 119 ~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
+...|+.............+.....++.+|+.+..|.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (514)
T 2gw1_A 476 ADLARTMEEKLQAITFAEAAKVQQRIRSDPVLAKKIQ 512 (514)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHTSTHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHhhCCHHHHHHhh
Confidence 4555643221112223333344456678888877765
No 150
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.20 E-value=3.5 Score=31.60 Aligned_cols=46 Identities=13% Similarity=-0.012 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH 85 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~ 85 (201)
+.+.-+|..+++.|+|..|++++....++.|....+..+...++..
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~ 123 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDK 123 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 4556679999999999999999999999999998777776665544
No 151
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=81.79 E-value=17 Score=28.58 Aligned_cols=56 Identities=18% Similarity=0.120 Sum_probs=42.8
Q ss_pred hhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 25 EAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 25 ~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
++...+...+.-..+...+..|..++..|++++|+..+.++....|....+...+.
T Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 66666655555555666777789999999999999999999999998765444333
No 152
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=81.65 E-value=1.2 Score=38.68 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=21.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+..+...|++++|+.++.++..++|...
T Consensus 207 g~~~~~~g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 207 QWVIQEFKLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCH
Confidence 6777777777778888888777777653
No 153
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=81.45 E-value=13 Score=27.11 Aligned_cols=34 Identities=18% Similarity=-0.044 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
...+|..++..|+++.|+..+.++..+.|....+
T Consensus 45 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 78 (225)
T 2vq2_A 45 WLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI 78 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence 3345778899999999999999999999986543
No 154
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=81.42 E-value=15 Score=27.73 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
+.....+|..++..|++++|+..+.++..+.|....+.
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 108 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL 108 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH
Confidence 34455567889999999999999999999999875443
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=81.27 E-value=9.3 Score=25.16 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
.+..+|..++..|+++.|+..+.++..+.|....+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 49 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYF 49 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHH
Confidence 334449999999999999999999999999875443
No 156
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=81.23 E-value=1.9 Score=32.55 Aligned_cols=45 Identities=24% Similarity=0.231 Sum_probs=31.9
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
+|++...+... |..++..|+++.|+..+.++....|....+...+
T Consensus 155 ~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 199 (243)
T 2q7f_A 155 NENDTEARFQF------------GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA 199 (243)
T ss_dssp CTTCHHHHHHH------------HHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCccHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 45555555555 8888888888888888888888888765444333
No 157
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=81.16 E-value=2.4 Score=29.22 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNP 70 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p 70 (201)
++-|.+++..++..++|..|+..++.|....+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~ 36 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLD 36 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhh
Confidence 56799999999999999999999999998753
No 158
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=81.03 E-value=7.2 Score=34.13 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=24.4
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHhCC
Q 037661 43 KHMAEELFKE--------EKIDSALCVVDRARMKNP 70 (201)
Q Consensus 43 ~~~A~~~l~~--------~d~~~A~~~~~~a~~~~p 70 (201)
..+|..++.. |++++|+..+.++..++|
T Consensus 217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 3447778888 999999999999999999
No 159
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=80.93 E-value=3 Score=35.70 Aligned_cols=45 Identities=9% Similarity=0.088 Sum_probs=35.3
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhH
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHF 79 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l 79 (201)
+|++..++... |..++..|++++|+..+.++..++|....+...+
T Consensus 55 ~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 99 (537)
T 3fp2_A 55 DPNEPVFYSNI------------SACYISTGDLEKVIEFTTKALEIKPDHSKALLRR 99 (537)
T ss_dssp CTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 45555555555 9999999999999999999999999875544333
No 160
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=80.58 E-value=3.9 Score=33.08 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=25.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
+|..++..|+++.|+..+.++..++|....+.
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 135 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLELKPDNQTAL 135 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHH
Confidence 46778888999999999999999888765443
No 161
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=80.05 E-value=5.6 Score=26.28 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=13.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
|..++..|+++.|+..+.++..+.|..
T Consensus 42 a~~~~~~~~~~~A~~~~~~~~~~~~~~ 68 (136)
T 2fo7_A 42 GNAYYKQGDYDEAIEYYQKALELDPRS 68 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCc
Confidence 444455555555555555555554443
No 162
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=79.94 E-value=5.6 Score=26.26 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+..++..++..|+++.|+..+.++....|...
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 103 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 103 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 34457778899999999999999999988764
No 163
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=79.82 E-value=3.7 Score=36.06 Aligned_cols=44 Identities=16% Similarity=0.007 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC 81 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~ 81 (201)
.+.-+..+|..++..|++++|+..+.++..++|....+...+..
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~ 300 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQ 300 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 33444455999999999999999999999999998755444433
No 164
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=77.98 E-value=5.3 Score=33.76 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
++.++.++..|..++..|+|+.|+..+.++....|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 38 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED 38 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc
Confidence 345666777788888888888888888888777774
No 165
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=77.86 E-value=5 Score=32.66 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
.++..++..|+++.|+..+.++..++|....+
T Consensus 104 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 135 (365)
T 4eqf_A 104 FLGITQAENENEQAAIVALQRCLELQPNNLKA 135 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 34666788899999999999999999876443
No 166
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=77.69 E-value=20 Score=27.33 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
+...+.+|..++..|++.+|+..+.++...+|.....
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 183 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQAT 183 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCcc
Confidence 3344678899999999999999999999999997643
No 167
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=77.08 E-value=16 Score=25.54 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=25.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
+|..++..|+++.|+..+.++..+.|....+
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 78 (186)
T 3as5_A 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKV 78 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Confidence 3888889999999999999999888876544
No 168
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=76.86 E-value=24 Score=27.43 Aligned_cols=39 Identities=13% Similarity=-0.023 Sum_probs=24.5
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
++|++..++... |..++..|+++.|+..+.++..+.|..
T Consensus 120 ~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~a~~~~~~~ 158 (330)
T 3hym_B 120 LEKTYGPAWIAY------------GHSFAVESEHDQAMAAYFTAAQLMKGC 158 (330)
T ss_dssp TCTTCTHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHTTTC
T ss_pred hCCccHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHhcccc
Confidence 456666665555 666666666666666666666666654
No 169
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=76.68 E-value=15 Score=24.93 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
.....+-++..++..|+|++|+..++++....|....
T Consensus 42 ~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 42 NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 3344445599999999999999999999999998443
No 170
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=76.57 E-value=15 Score=29.40 Aligned_cols=33 Identities=6% Similarity=-0.115 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
..+..++..+...|++++|+..+.+|..+++..
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 344455566667777777777777777776543
No 171
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=76.37 E-value=11 Score=33.03 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=31.0
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
.+|.+..++... +. +...|+++.|+..++++...+|....+
T Consensus 8 ~~P~~~~~w~~l------------~~-~~~~~~~~~a~~~~e~al~~~P~~~~~ 48 (530)
T 2ooe_A 8 ENPYDLDAWSIL------------IR-EAQNQPIDKARKTYERLVAQFPSSGRF 48 (530)
T ss_dssp HCTTCHHHHHHH------------HH-HHHSSCHHHHHHHHHHHHTTCTTCHHH
T ss_pred hCCCCHHHHHHH------------HH-HHHhCCHHHHHHHHHHHHHHCCCCHHH
Confidence 366677666665 55 367889999999999999999987544
No 172
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=76.35 E-value=5.4 Score=32.84 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
.+..++..++..|++++|+..+.++..+.|....
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 102 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID 102 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHH
Confidence 3445577788888888888888888888887643
No 173
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=75.59 E-value=26 Score=27.22 Aligned_cols=43 Identities=12% Similarity=-0.034 Sum_probs=36.7
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCchhHH
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEE-KIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~-d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
.+|++..++... +..++..| +++.|+..+.++..+.|....+.
T Consensus 85 ~~~~~~~~~~~l------------~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 128 (330)
T 3hym_B 85 LYPSNPVSWFAV------------GCYYLMVGHKNEHARRYLSKATTLEKTYGPAW 128 (330)
T ss_dssp HCTTSTHHHHHH------------HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHH
T ss_pred hCcCCHHHHHHH------------HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHH
Confidence 467777888777 99999999 99999999999999999875443
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=75.49 E-value=5.2 Score=35.39 Aligned_cols=38 Identities=16% Similarity=-0.095 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
+.-+..+|..++..|++++|+..+.+|.+++|....+.
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 77 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY 77 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34445559999999999999999999999999875443
No 175
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=75.22 E-value=4.7 Score=35.18 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=32.2
Q ss_pred CChhh-HHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 22 NNPEA-REALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 22 ~~p~~-~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
.+|++ ...+... +..+...|++++|+..++++..+.|....+...+.
T Consensus 510 ~~p~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 510 SNEKPWAATWANL------------GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp CCSGGGHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred cchhhHHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 35665 5666666 77788888888888888888888876654443333
No 176
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=73.92 E-value=2.9 Score=32.25 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=24.9
Q ss_pred HHHHHhcCC----------HHHHHHHHHHHHHhCCCchhHHh
Q 037661 46 AEELFKEEK----------IDSALCVVDRARMKNPNHQGLNS 77 (201)
Q Consensus 46 A~~~l~~~d----------~~~A~~~~~~a~~~~p~~~~~~~ 77 (201)
+..++..+. +++|+..|++|..++|....+--
T Consensus 43 G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~ 84 (158)
T 1zu2_A 43 GGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHH
Confidence 666666655 56999999999999999865443
No 177
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=73.85 E-value=13 Score=31.30 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
.+|..+...|+++.|+..+.++..++|....+...+.
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 4577889999999999999999999999865544443
No 178
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=72.76 E-value=31 Score=26.75 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=16.0
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 49 LFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 49 ~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
++..|+++.|+..+.++....|...
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~ 172 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDA 172 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCH
Confidence 4555666667777777666666553
No 179
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=72.60 E-value=7.6 Score=31.92 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=13.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
+..++..|++++|+..+.++..+.|..
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~~ 270 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPHF 270 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 444555555555555555555555543
No 180
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=72.44 E-value=17 Score=23.55 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
..+..+|..++..|+++.|+..+.++....|....+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 45 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHH
Confidence 344455999999999999999999999999876533
No 181
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=72.12 E-value=6.7 Score=33.11 Aligned_cols=33 Identities=9% Similarity=-0.040 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 43 KHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 43 ~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
..+|..+...|++++|+..++++..+.+.....
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~ 370 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSKELTPVAK 370 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence 456888999999999999999999999887543
No 182
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=70.58 E-value=30 Score=25.63 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHH
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLN 76 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~ 76 (201)
.-+..+|..++..|+++.|+..+.++..+.|....+.
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 94 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAY 94 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHH
Confidence 3344458888889999999999999998888765443
No 183
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=69.26 E-value=24 Score=30.35 Aligned_cols=86 Identities=13% Similarity=0.133 Sum_probs=54.9
Q ss_pred HHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHH--------H-HhhhccCcchhcccc
Q 037661 31 FSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVH--------K-LAAEKKSWYAVLGIR 101 (201)
Q Consensus 31 ~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~--------~-~~~~~~d~Y~vLgv~ 101 (201)
..++...-...+...++.++..|++..|+..+..+...+|..+.+...+-.+... . ...-..-+.+-|||.
T Consensus 163 r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~ 242 (388)
T 2ff4_A 163 ATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3333333334556678889999999999999999999999987655433322110 0 011122355678998
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q 037661 102 DHRAGVDVIKKRYEALVQL 120 (201)
Q Consensus 102 ~~~as~~eIkkaYrkla~~ 120 (201)
| ..+++.-|+.+...
T Consensus 243 P----~~~l~~l~~~il~~ 257 (388)
T 2ff4_A 243 P----GPTLRALNERILRQ 257 (388)
T ss_dssp C----CHHHHHHHHHHHTT
T ss_pred C----CHHHHHHHHHHHcC
Confidence 8 34577777776543
No 184
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=69.13 E-value=9.6 Score=31.99 Aligned_cols=34 Identities=9% Similarity=0.166 Sum_probs=27.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHH
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFA 80 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~ 80 (201)
+..+.+.|+.++|+..++++...+|. ..+...+.
T Consensus 215 glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 215 AMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 66778889999999999999999998 65555443
No 185
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=67.59 E-value=45 Score=26.59 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=9.8
Q ss_pred CHHHHHHHHHHHHHh
Q 037661 106 GVDVIKKRYEALVQL 120 (201)
Q Consensus 106 s~~eIkkaYrkla~~ 120 (201)
..++.+..|.+....
T Consensus 218 ~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 218 EDNNTRVLFERVLTS 232 (308)
T ss_dssp CHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhc
Confidence 456677777776654
No 186
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=67.05 E-value=8.6 Score=26.25 Aligned_cols=32 Identities=22% Similarity=0.134 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
+.|..++..|...-..|++.+|+..|..+...
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46888888899999999999999999887743
No 187
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=66.90 E-value=62 Score=27.87 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=14.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
+..+...|++++|+..+.++..+.|..
T Consensus 414 ~~~~~~~g~~~~A~~~~~~~~~~~~~~ 440 (597)
T 2xpi_A 414 AHSFAIEGEHDQAISAYTTAARLFQGT 440 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 555555555555555555555555543
No 188
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=66.40 E-value=5.9 Score=29.59 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=35.0
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCH-HHH---HHHHHHHHHhC
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKI-DSA---LCVVDRARMKN 69 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~-~~A---~~~~~~a~~~~ 69 (201)
..+|.-+-.++.. .+.+.+..|..++..||+ +++ -..+.+|+.+.
T Consensus 15 tAsP~~Li~mLyd----gai~~l~~A~~ai~~~d~~~~k~~~~~~i~KA~~Ii 63 (130)
T 1orj_A 15 TATPLEQIILLYD----KAIECLERAIEIYDQVNELEKRKEFVENIDRVYDII 63 (130)
T ss_dssp CCHHHHHHHHHHH----HHHHHHHHHHHTGGGTTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3467777777665 889999999999999999 888 66677776543
No 189
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=66.06 E-value=12 Score=30.07 Aligned_cols=29 Identities=10% Similarity=-0.021 Sum_probs=25.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
.|..+...|++++|+..|+++..+.|...
T Consensus 105 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (308)
T 2ond_A 105 YADYEESRMKYEKVHSIYNRLLAIEDIDP 133 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhccccCc
Confidence 37888889999999999999999998764
No 190
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=66.04 E-value=15 Score=30.18 Aligned_cols=38 Identities=8% Similarity=0.002 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
...+..++.+|..++..|+++.|+..+.++..+.|...
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~ 82 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh
Confidence 45667777889999999999999999999999999864
No 191
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=65.25 E-value=11 Score=25.90 Aligned_cols=32 Identities=19% Similarity=0.010 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
+.|..++..|...-..|++.+|+..|..+...
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45788888899999999999999999887743
No 192
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=62.99 E-value=11 Score=26.27 Aligned_cols=31 Identities=26% Similarity=0.100 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
.|..++..|...-..|+|++|+..|..+..+
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566667799999999999999999887754
No 193
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=62.46 E-value=8.7 Score=29.82 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
...+.-+..+|..++..|++++|+..+.++.++.|.
T Consensus 275 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 275 PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 334444555699999999999999999999988764
No 194
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=61.18 E-value=62 Score=25.94 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=32.5
Q ss_pred HhhCHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 32 SKLADKEAEAS----------KHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 32 ~r~n~~ea~~~----------~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
..++-++|.++ ..++..+++.|+++.|+..+.++..++|...
T Consensus 113 ~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 164 (291)
T 3mkr_A 113 YDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT 164 (291)
T ss_dssp HTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH
Confidence 44556666543 3457889999999999999999999998763
No 195
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.66 E-value=40 Score=27.79 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
-++.|+.++..|+|.+|+..+.++....+..
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~ 37 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQ 37 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCccc
Confidence 3556888888899999999999888888764
No 196
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=59.28 E-value=21 Score=24.15 Aligned_cols=34 Identities=6% Similarity=0.075 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
+.-+..+|..++..|+++.|+..+.++..+.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 42 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 42 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 4456667888889999999999999988876643
No 197
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=59.19 E-value=21 Score=27.53 Aligned_cols=44 Identities=9% Similarity=0.116 Sum_probs=36.7
Q ss_pred CCcccCCCCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 13 SSSLSSSPFNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 13 ~~~~~~~~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
-.-.+..+.-+|+....+... |..++..|+++.|+..+.++..+
T Consensus 13 ~~~~q~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~a~~~ 56 (311)
T 3nf1_A 13 NLYFQGGGYEIPARLRTLHNL------------VIQYASQGRYEVAVPLCKQALED 56 (311)
T ss_dssp GGSCSSSCTTSCHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccCCCCcchHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHH
Confidence 334555666688888888888 99999999999999999999986
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=59.15 E-value=12 Score=31.06 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
.+..+|..++..|+|+.|+..+.++..++|....+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a 266 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKA 266 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 45677999999999999999999999999987544
No 199
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=58.89 E-value=45 Score=26.49 Aligned_cols=34 Identities=6% Similarity=-0.146 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQG 74 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~ 74 (201)
-...++..++..|++++|+..+.++..+.|....
T Consensus 160 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 3456678888999999999999999999987643
No 200
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=58.43 E-value=23 Score=27.34 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+..+...|..++..|+++.|+..+.++..+.|...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~ 39 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL 39 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH
Confidence 34555669999999999999999999999988764
No 201
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=58.43 E-value=13 Score=27.15 Aligned_cols=30 Identities=20% Similarity=0.050 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARM 67 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~ 67 (201)
.|..++..|...-..|+|++|+.+|..+..
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456666678888899999999999988773
No 202
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=57.48 E-value=16 Score=24.69 Aligned_cols=31 Identities=10% Similarity=-0.081 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
.|..++..|...-..|++++|+..|..+..+
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667777788889999999999999887754
No 203
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=56.98 E-value=15 Score=25.19 Aligned_cols=29 Identities=21% Similarity=0.060 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
..++..|...-..|++++|+..|..+..+
T Consensus 17 ~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 17 ATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556688889999999999999887744
No 204
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=56.98 E-value=24 Score=25.04 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=19.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 037661 45 MAEELFKEEKIDSALCVVDRARM 67 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~ 67 (201)
.|+.+++.|.|++|+....+|..
T Consensus 21 rAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 39999999999999888777663
No 205
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=56.24 E-value=19 Score=26.67 Aligned_cols=46 Identities=11% Similarity=0.136 Sum_probs=38.9
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNP 70 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p 70 (201)
..+|.-+-.++.. .+.+.+..|..++..+|++++-..+.||+.+.-
T Consensus 22 tasP~~Li~mLyd----gal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~ 67 (131)
T 3iqc_A 22 VESPAKLIEMLYE----GILRFSSQAKRCIENEDIEKKIYYINRVTDIFT 67 (131)
T ss_dssp -CCHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4578888877776 899999999999999999999999999886553
No 206
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=54.97 E-value=25 Score=32.79 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHH
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACY 82 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 82 (201)
++++++.|+.++..|+|.-|...+..+...+|....++.+.+.+
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~ 492 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADA 492 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 46788889999999999999999999999999998877766543
No 207
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=53.81 E-value=9.8 Score=29.10 Aligned_cols=42 Identities=10% Similarity=0.055 Sum_probs=28.4
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 27 REALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 27 ~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
+..+..-.+...+..+..++..++..+|+++|+..+.++...
T Consensus 6 ~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 47 (212)
T 3rjv_A 6 GSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ 47 (212)
T ss_dssp THHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 333333333445666777788888888888888888887765
No 208
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=53.50 E-value=52 Score=22.70 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
+..+|..++..|+++.|+..+.++..++|....+
T Consensus 79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 112 (186)
T 3as5_A 79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHH
Confidence 3445778889999999999999999999986543
No 209
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=53.33 E-value=24 Score=26.62 Aligned_cols=33 Identities=15% Similarity=-0.009 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
...+.-...+|..++..|++++|+..+.++..+
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445556667799999999999999999999988
No 210
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=52.80 E-value=34 Score=23.02 Aligned_cols=33 Identities=6% Similarity=-0.010 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
.-...+|..++..|++++|+..+.++..+.+..
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 456677899999999999999999999877654
No 211
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=52.59 E-value=23 Score=26.74 Aligned_cols=45 Identities=7% Similarity=0.025 Sum_probs=38.2
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
..+|.-+-.++.. .+.+.+..|..++..||++++-..+.||+.+.
T Consensus 19 tAsP~~Li~mLyd----gal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii 63 (145)
T 1vh6_A 19 TATPGELTLMLYN----GCLKFIRLAAQAIENDDMERKNENLIKAQNII 63 (145)
T ss_dssp -CCTTHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4577777777776 89999999999999999999999999998665
No 212
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=50.23 E-value=42 Score=25.16 Aligned_cols=34 Identities=15% Similarity=0.029 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
...+.-+..+|..++..|+++.|+..+.++..+.
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 73 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIR 73 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 5566777788999999999999999999999885
No 213
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=49.78 E-value=33 Score=27.58 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
.+...|..++..|++++|+..+.++..+.|...
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~ 43 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL 43 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH
Confidence 344559999999999999999999999988764
No 214
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.38 E-value=65 Score=28.27 Aligned_cols=108 Identities=14% Similarity=0.097 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCchh---HHhhHHHHHHHHHhhhccCcch-------hc-cccCCCCCHH
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARM-KNPNHQG---LNSHFACYVVHKLAAEKKSWYA-------VL-GIRDHRAGVD 108 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~-~~p~~~~---~~~~l~~~~v~~~~~~~~d~Y~-------vL-gv~~~~as~~ 108 (201)
-...+|..+...|+|.+|...+...+. .+...+. +.-.+...... -...||=+ +. .+.. .....
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~---l~~~d~~~a~~~~~ki~~~~~~-~~~~~ 214 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS---ILKGDYSQATVLSRKILKKTFK-NPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH---HHHTCHHHHHHHHHHHHHHHHH-SSCCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHhhcc-cCCcH
Confidence 345679999999999999999999763 4443322 22222222211 11222211 10 0111 23456
Q ss_pred HHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHH
Q 037661 109 VIKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRRE 152 (201)
Q Consensus 109 eIkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~ 152 (201)
+++-.|+.+.-++|-....-..|...|..+-+.+.+..|+.++.
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~ 258 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWK 258 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHH
Confidence 78888888888887655444457888888988999999987664
No 215
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=46.32 E-value=22 Score=29.73 Aligned_cols=41 Identities=7% Similarity=-0.044 Sum_probs=35.8
Q ss_pred CCCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCc
Q 037661 20 PFNNPEAREALFSKLADKEAEASKHMAEELFKEE--KIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 20 ~~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~--d~~~A~~~~~~a~~~~p~~ 72 (201)
..+||++..++..| .......+ ++++++.++.++..++|..
T Consensus 60 L~~nP~~~taWn~R------------~~~L~~l~~~~~~eeL~~~~~~L~~nPk~ 102 (306)
T 3dra_A 60 INELASHYTIWIYR------------FNILKNLPNRNLYDELDWCEEIALDNEKN 102 (306)
T ss_dssp HHHCTTCHHHHHHH------------HHHHHTCTTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHCcHHHHHHHHH------------HHHHHHcccccHHHHHHHHHHHHHHCccc
Confidence 34688888888888 88888888 9999999999999999987
No 216
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=44.96 E-value=32 Score=24.78 Aligned_cols=34 Identities=6% Similarity=0.003 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNP 70 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p 70 (201)
..+.-...++..++..|+++.|+..+.++..+.+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4566667778888888888888888888876654
No 217
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=43.38 E-value=1.2e+02 Score=24.03 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=25.1
Q ss_pred CHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 35 ADKEAEASKHM-AEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 35 n~~ea~~~~~~-A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
+-++|..+... +..+...|+|+.|+..+.++..+++..
T Consensus 31 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~ 69 (307)
T 2ifu_A 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN 69 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 33444444443 456777888888888888888776543
No 218
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=42.45 E-value=1.3e+02 Score=23.93 Aligned_cols=30 Identities=10% Similarity=-0.011 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNP 70 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p 70 (201)
..+..+|..+.. |+++.|+..+++|..+++
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~ 146 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFE 146 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 334444555555 555555555555555544
No 219
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=42.06 E-value=36 Score=26.14 Aligned_cols=35 Identities=9% Similarity=-0.013 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
..+.-+..+|..++..|+++.|+..+.++..+.+.
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 34455666788999999999999999988877654
No 220
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=41.53 E-value=40 Score=29.96 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=32.3
Q ss_pred hCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 037661 34 LADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNP 70 (201)
Q Consensus 34 ~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p 70 (201)
.++-++-+++..|...++.||+++|.+.+..|.++.-
T Consensus 377 ~~~~~~a~~~~~a~~~~~~gd~~~A~~~L~~A~~~~~ 413 (464)
T 4fx5_A 377 TGQAEMAAAIQEGLDAQAAGDLDTATARLGRAMDLAV 413 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999987643
No 221
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=41.44 E-value=50 Score=26.85 Aligned_cols=33 Identities=9% Similarity=0.072 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
+.-+..+|..++..|+++.|+..+.++..+.+.
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666666666665443
No 222
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=39.57 E-value=55 Score=27.69 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
.++..+++.|+.+.|++.+.++++.+|.
T Consensus 141 l~vqi~L~~~r~d~A~k~l~~~~~~~~d 168 (310)
T 3mv2_B 141 LAIEVALLNNNVSTASTIFDNYTNAIED 168 (310)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 3467799999999999999999999983
No 223
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=38.97 E-value=45 Score=21.01 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH----NAELSKMLGKSWKALTLAEKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4556777777888865 3688999999999999777666554
No 224
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=38.33 E-value=57 Score=23.34 Aligned_cols=31 Identities=16% Similarity=-0.049 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
.+.-...+|..++..|++++|+..+.++..+
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445556678889999999999999999888
No 225
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=37.43 E-value=65 Score=20.30 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=30.1
Q ss_pred HHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 113 RYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 113 aYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
..|...+.-||+.... ..+..+.|.+.|..|++.++....+
T Consensus 15 ~~r~~~~~~~p~~~~~--~~eisk~lg~~Wk~ls~~eK~~y~~ 55 (71)
T 1ckt_A 15 TCREEHKKKHPDASVN--FSEFSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHHCTTCCCC--HHHHHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHHCCCCCCc--HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 3455556678986532 2688999999999999888766554
No 226
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=37.25 E-value=47 Score=34.62 Aligned_cols=81 Identities=11% Similarity=0.163 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHH----HHHhhhccCcchhccccCCCCCHHHHHHHHHH
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVV----HKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEA 116 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v----~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrk 116 (201)
.+-+++.-+...|.|++|++.++++..+++..-++...+..+.. ..+..--+-|+..+.+++ -....+--..|..
T Consensus 1282 eLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k-~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A 1282 ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK-VLRAAEQAHLWAE 1360 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch-HhHHHHHHHHHHH
Confidence 33366677889999999999999999999877555433333322 112222235677777776 5555555566777
Q ss_pred HHHhhC
Q 037661 117 LVQLFK 122 (201)
Q Consensus 117 la~~~H 122 (201)
++..||
T Consensus 1361 lv~LY~ 1366 (1630)
T 1xi4_A 1361 LVFLYD 1366 (1630)
T ss_pred HHHHHH
Confidence 777765
No 227
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=37.14 E-value=90 Score=22.06 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhh
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSH 78 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~ 78 (201)
..|.-.++.|...++.++|-.|..+++++..+..+.. +..+
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~-i~ki 91 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEE-IKKI 91 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-HHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHH-HHHH
Confidence 5677888999999999999999999999998776653 4433
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=36.78 E-value=22 Score=30.28 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=11.3
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 037661 53 EKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 53 ~d~~~A~~~~~~a~~~~p~ 71 (201)
||+++|.+.+++|.++.|.
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 5566666666666665554
No 229
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=36.31 E-value=1.3e+02 Score=24.36 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+.-...+|..++..|+++.|+..+.+|..+++...
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 34445556677777778888888877777766543
No 230
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=36.11 E-value=61 Score=23.50 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARM 67 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~ 67 (201)
|.|++-++.|+..+..|.|+.|.-.++.|.+
T Consensus 14 ~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~E 44 (135)
T 1o3u_A 14 DAAKDDLEHAKHDLEHGFYNWACFSSQQAAE 44 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 6788999999999999999999888777663
No 231
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=35.84 E-value=57 Score=23.30 Aligned_cols=34 Identities=15% Similarity=-0.042 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 35 ADKEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 35 n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
+-.+|.-+.-.|..+.+.|||++|...+..|...
T Consensus 16 ~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~ 49 (105)
T 2e2a_A 16 YAGDARSKLLEALKAAENGDFAKADSLVVEAGSC 49 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456777777788889999999999999988853
No 232
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=35.56 E-value=86 Score=23.48 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
-|..++..|..+...||++.|.-+|.+...+.
T Consensus 39 ta~~llr~A~~y~~egd~e~AYily~R~~~L~ 70 (146)
T 2xze_A 39 SGVEIIRMASIYSEEGNIEHAFILYNKYITLF 70 (146)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 37889999999999999999999998876543
No 233
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=35.26 E-value=37 Score=29.46 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=25.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
.+...++.|+++.|+..+.++...+|..
T Consensus 52 ~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 52 YIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 3888889999999999999999999954
No 234
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=34.79 E-value=53 Score=26.32 Aligned_cols=34 Identities=9% Similarity=0.004 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
.+.-+..+|..++..|++++|+..+.++..+.+.
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 3445555677777788888888887777776543
No 235
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=34.45 E-value=62 Score=23.01 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037661 35 ADKEAEASKHMAEELFKEEKIDSALCVVDRARM 67 (201)
Q Consensus 35 n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~ 67 (201)
+-.+|.-+.-.|..+.+.|||++|...+.++..
T Consensus 14 ~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 14 NSGQARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345666677778888899999999999988875
No 236
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=34.45 E-value=63 Score=20.73 Aligned_cols=41 Identities=12% Similarity=0.315 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
.+.+|..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 16 ~~~~r~~~~~~~p~~~~----~eisk~lg~~Wk~ls~~eK~~y~~ 56 (76)
T 1hry_A 16 SRDQRRKMALENPRMRN----SEISKQLGYQWKMLTEAEKWPFFQ 56 (76)
T ss_dssp HHHHHHHHHHHCSCCSS----SHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCH----HHHHHHHHhHHHhCCHHHHHHHHH
Confidence 44566666777898653 477899999999998776655544
No 237
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=34.10 E-value=2.3e+02 Score=24.47 Aligned_cols=87 Identities=8% Similarity=-0.011 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHH
Q 037661 43 KHMAEELFKEEKIDSALCVVDRARMKN-----PNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEAL 117 (201)
Q Consensus 43 ~~~A~~~l~~~d~~~A~~~~~~a~~~~-----p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkl 117 (201)
-.+|..+...|+|++|+.+++++..++ |..+.+...+..+... |.-+|--. .-..-+++|..-+
T Consensus 333 ~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~---------~~~~g~~~--eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 333 DCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKL---------QLHQGMFP--QAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH---------HHHTTCHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHH---------HHhcCCHH--HHHHHHHHHHHHH
Confidence 345778899999999999999988654 3444444444433333 22222111 1233466777776
Q ss_pred HHhhCCCCCCCchHHHHHHHHHHHHH
Q 037661 118 VQLFKPDRCSSVGADTANKLINEAWE 143 (201)
Q Consensus 118 a~~~HPDk~~~~~a~~~f~~i~~Ay~ 143 (201)
...+-||+. ...+....+.++..
T Consensus 402 ~~~lG~~Hp---~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 402 RVTHGREHS---LIEDLILLLEECDA 424 (429)
T ss_dssp HHHTCTTSH---HHHHHHHHHHHHHH
T ss_pred HHhcCCCCh---HHHHHHHHHHHHHH
Confidence 666666653 22334444544443
No 238
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=33.98 E-value=63 Score=23.24 Aligned_cols=34 Identities=18% Similarity=0.078 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 35 ADKEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 35 n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
+-.+|.-+.-.|..+.+.|||++|...+..|...
T Consensus 18 ~aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~~ 51 (109)
T 3k1s_A 18 NSGNARSFAMEALQFAKQGKMAEADEAMVKAKEA 51 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456666777788888999999999999988743
No 239
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.81 E-value=1.9e+02 Score=23.47 Aligned_cols=105 Identities=9% Similarity=0.012 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchh----HHhhHHHHHHHHHhhhccCc------c-hhccccCCCCCHHH
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQG----LNSHFACYVVHKLAAEKKSW------Y-AVLGIRDHRAGVDV 109 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~v~~~~~~~~d~------Y-~vLgv~~~~as~~e 109 (201)
-...+|..++..|+|.+|+..+.++......... +.-.+....+. ....|| | +.|.+.+....+..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~A~~~~~~al~~~~~~~~~~~ 213 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVY---HKLRNLAKSKASLTAARTAANSIYCPTQ 213 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH---HHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence 3456788999999999999999998876543321 11111111111 011111 1 12222210112334
Q ss_pred HHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCCh
Q 037661 110 IKKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDP 148 (201)
Q Consensus 110 IkkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp 148 (201)
+...+....-.+|-.......+...|...-+.+..+.+.
T Consensus 214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~ 252 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTH 252 (434)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Confidence 555566666666655444444566666666666665554
No 240
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=32.90 E-value=63 Score=26.41 Aligned_cols=34 Identities=9% Similarity=0.038 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
+..+..+|..++..|+++.|+..+.++..+.+..
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 4445566888999999999999999999997754
No 241
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=32.86 E-value=66 Score=23.61 Aligned_cols=35 Identities=20% Similarity=0.109 Sum_probs=28.0
Q ss_pred hCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 34 LADKEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 34 ~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
++-.+|.-+.-.|..+.+.|||++|...+..|...
T Consensus 32 ~~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e~ 66 (120)
T 3l8r_A 32 LNSGNARSIVHEAFDAMREKNYILAEQKLQEANDE 66 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566777777788888999999999999988743
No 242
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=32.80 E-value=1.6e+02 Score=23.77 Aligned_cols=34 Identities=9% Similarity=0.147 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
+.....+|..+...|+++.|+..+.+|..+.+..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 217 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE 217 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence 3445556788889999999999999999887654
No 243
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=32.61 E-value=90 Score=27.33 Aligned_cols=33 Identities=9% Similarity=-0.071 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
+-|..+..+|..+...|++++|+..+++|..+.
T Consensus 380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 380 NVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 344445567888899999999999999998654
No 244
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=32.59 E-value=1.3e+02 Score=21.05 Aligned_cols=30 Identities=7% Similarity=0.041 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHh
Q 037661 39 AEASKHMAEELFK----EEKIDSALCVVDRARMK 68 (201)
Q Consensus 39 a~~~~~~A~~~l~----~~d~~~A~~~~~~a~~~ 68 (201)
+..+..++..++. .+|++.|+..+++|...
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence 4455556666666 66777777777776654
No 245
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=32.08 E-value=66 Score=23.75 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=28.1
Q ss_pred ChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037661 23 NPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRAR 66 (201)
Q Consensus 23 ~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~ 66 (201)
|++..+.++.+ |.+-++.|+..+..|+|+-|.-.+++|.
T Consensus 5 ~~ee~~~wl~~-----A~~dl~~A~~~~~~g~y~~a~F~aqQA~ 43 (141)
T 3o10_A 5 NPVEARRWLRQ-----ARANFSAARNDLHKNANEWVCFKCYLST 43 (141)
T ss_dssp CHHHHHHHHHH-----HHHHHHHHGGGTTTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHH-----HHhhhhHHhhHHhhCccceEeeehhHHH
Confidence 56666666666 6677777778888999988776665554
No 246
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=31.82 E-value=57 Score=28.00 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=33.4
Q ss_pred CCChhhHHHHHHhhCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCch
Q 037661 21 FNNPEAREALFSKLADKEAEASKHMAEELFKEE-KIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 21 ~~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~-d~~~A~~~~~~a~~~~p~~~ 73 (201)
.+||++..++..| .......+ ++++++.++.++...+|..-
T Consensus 82 ~~nP~~ytaWn~R------------~~iL~~l~~~l~eEL~~~~~~L~~nPKny 123 (349)
T 3q7a_A 82 RMNPAHYTVWQYR------------FSLLTSLNKSLEDELRLMNEFAVQNLKSY 123 (349)
T ss_dssp HHCTTCHHHHHHH------------HHHHHHTTCCHHHHHHHHHHHHHTTCCCH
T ss_pred HhCchhHHHHHHH------------HHHHHHhhhhHHHHHHHHHHHHHhCCCcH
Confidence 4578888888887 66666777 69999999999999999773
No 247
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=31.48 E-value=98 Score=19.44 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=33.0
Q ss_pred hhhHHHHHHhh-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 24 PEAREALFSKL-ADKEAEASKHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 24 p~~~~~~~~r~-n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
|++++.+.-+- .-.+|.+.-.-|...+.-.|+.-|++.+.+|.++
T Consensus 4 ~~~~~~~~~~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~l 49 (53)
T 2rkl_A 4 KDELTKIMDRASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred chhhhhcCCCHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 55666665552 2345677777788899999999999999888754
No 248
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=31.27 E-value=74 Score=20.78 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
.+.+|..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 19 ~~~~r~~~~~~~p~~~~----~eisk~lg~~Wk~ls~~eK~~y~~ 59 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDN----RGATKILADWWAVLDPKEKQKYTD 59 (82)
T ss_dssp HHHHHHHHHHHCSSSCT----THHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH----HHHHHHHHHHHhhCCHHHHHHHHH
Confidence 45566777778898643 478889999999999877665554
No 249
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=31.26 E-value=64 Score=21.06 Aligned_cols=42 Identities=14% Similarity=0.325 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhc
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDL 156 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~ 156 (201)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 16 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 16 AKDERRKILQAFPDMH----NSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHHTTCSSCC----HHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 4455666677788754 36889999999999999888776653
No 250
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=31.01 E-value=72 Score=21.49 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhc
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDL 156 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~ 156 (201)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~~ 60 (92)
T 2crj_A 19 LNERREQIRTRHPDLP----FPEITKMLGAEWSKLQPAEKQRYLDE 60 (92)
T ss_dssp HHHHHHHHHHHCTTCC----HHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4456666777788854 37889999999999998887766553
No 251
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=30.88 E-value=75 Score=20.72 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
...+|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 18 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH----NAELSKMLGKSWKALTLAEKRPFVE 58 (83)
T ss_dssp HHHHHHHHHHHCSSSC----HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4556777778889865 3688999999999999777766554
No 252
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=30.72 E-value=60 Score=29.35 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=34.0
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCch
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEE--KIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~--d~~~A~~~~~~a~~~~p~~~ 73 (201)
.+|.+..++..| +......+ +|++|+.++.++..++|..-
T Consensus 102 ~~pK~y~aW~hR------------~w~l~~l~~~~~~~el~~~~k~l~~d~~N~ 143 (567)
T 1dce_A 102 VNPKSYGTWHHR------------CWLLSRLPEPNWARELELCARFLEADERNF 143 (567)
T ss_dssp HCTTCHHHHHHH------------HHHHHTCSSCCHHHHHHHHHHHHHHCTTCH
T ss_pred hCCCCHHHHHHH------------HHHHHHcccccHHHHHHHHHHHHhhccccc
Confidence 477777888777 77778888 88999999999999999873
No 253
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=30.38 E-value=68 Score=21.55 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhcc
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLL 157 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~ 157 (201)
...+|...+.-||+.. ..+..+.|.+.|..|++.++....+.-
T Consensus 32 ~~~~r~~~k~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~~A 74 (90)
T 1wgf_A 32 SEEKRRQLQEERPELS----ESELTRLLARMWNDLSEKKKAKYKARE 74 (90)
T ss_dssp HHHTHHHHHHHCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455666777788843 378899999999999988777666543
No 254
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.26 E-value=73 Score=21.10 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
....|...+.-||+.... ..+..+.|.+.|..|++.++....+
T Consensus 27 ~~~~r~~~k~~~p~~~~~--~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPVN--FAEFSKKCSERWKTMSGKEKSKFDE 69 (86)
T ss_dssp HHHHHHHHHHHCTTSCCC--HHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 344556666778986532 2688999999999999877766554
No 255
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=29.38 E-value=85 Score=20.12 Aligned_cols=41 Identities=12% Similarity=0.200 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 18 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS----IGDVAKKLGEMWNNTAADDKQPYEK 58 (77)
T ss_dssp HHHHHHHHHHHCTTCC----HHHHHHHHHHHHHHSCGGGSHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3445556666788753 3788999999999999887766554
No 256
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A
Probab=29.19 E-value=78 Score=27.70 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=41.3
Q ss_pred cccCCCCCChhhHHHHHHhh-----------CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 15 SLSSSPFNNPEAREALFSKL-----------ADKEAEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 15 ~~~~~~~~~p~~~~~~~~r~-----------n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
++-.+++.||+.-+.+...+ -..++++...+|..+++.|++..|.-.+-.|..+.
T Consensus 63 ~~f~~Hfydp~~~~~~~~~~~w~~~~~~~~tA~~~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy~ 128 (370)
T 2wxu_A 63 DLYQDHFWDPDIDNNFSKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYF 128 (370)
T ss_dssp TTCGGGCCCTTC---------CTTTBCBCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCCCcccccccccccCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 46678999999998875442 36788999999999999999999999999888654
No 257
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=28.53 E-value=72 Score=27.10 Aligned_cols=27 Identities=7% Similarity=0.008 Sum_probs=22.5
Q ss_pred HHHHHh-----cCCHHHHHHHHHHHHHhCCCc
Q 037661 46 AEELFK-----EEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 46 A~~~l~-----~~d~~~A~~~~~~a~~~~p~~ 72 (201)
+..+.. .||.++|...+++|.+++|+.
T Consensus 206 G~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 206 TKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 444555 499999999999999999964
No 258
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.92 E-value=1.8e+02 Score=21.21 Aligned_cols=43 Identities=9% Similarity=-0.078 Sum_probs=34.1
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRAR 66 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~ 66 (201)
.+|..++.+... =+.|.++|..|...-..|+-+.|+.+|.+.+
T Consensus 7 ~e~~~l~~ik~~--h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI 49 (116)
T 2dl1_A 7 GEPAEIKIIREA--YKKAFLFVNKGLNTDELGQKEEAKNYYKQGI 49 (116)
T ss_dssp TSCSHHHHHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 467766666554 6778999999999888999999998887754
No 259
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=27.91 E-value=53 Score=29.74 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=32.4
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCc
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEK----------IDSALCVVDRARMKNPNH 72 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d----------~~~A~~~~~~a~~~~p~~ 72 (201)
++|++..++..| +......|+ +++|+.++.++...+|..
T Consensus 58 ~nP~~~taW~~R------------~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~ 106 (567)
T 1dce_A 58 ANPDFATLWNCR------------REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 106 (567)
T ss_dssp HCTTCHHHHHHH------------HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HCchhHHHHHHH------------HHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 578888888887 666666666 999999999999999976
No 260
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=27.21 E-value=2.2e+02 Score=22.11 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
....+.+.+..++..|+++.|...+.++....+.....
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~ 111 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF 111 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHH
Confidence 34455566899999999999999999999887766543
No 261
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=27.18 E-value=1.4e+02 Score=20.48 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhcc
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLL 157 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~ 157 (201)
.+..|..++.-||+... .+..+.|.+.|..|++.++....+..
T Consensus 22 ~~~~r~~ik~~~P~~~~----~eisk~lg~~Wk~ls~eeK~~Y~~~A 64 (99)
T 1k99_A 22 FMEKRAKYAKLHPEMSN----LDLTKILSKKYKELPEKKKMKYIQDF 64 (99)
T ss_dssp HHHHHHHHHTTCTTSCS----HHHHHHHHHHHHHSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44456666677888542 68899999999999998887766543
No 262
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=32.46 E-value=14 Score=34.81 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHH
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFAC 81 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~ 81 (201)
++++++.|+.++..|||.-|..++..+...+|....++.+.+.
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~ 503 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQAD 503 (668)
Confidence 4678888999999999999999999999999999877766553
No 263
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=26.16 E-value=1e+02 Score=24.12 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
-+..+|..++..|+++.|+.++.++..+.+.
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4455677788889999999999888876543
No 264
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.07 E-value=74 Score=21.22 Aligned_cols=45 Identities=16% Similarity=0.003 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccC
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLM 158 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~ 158 (201)
-..+|...+.-||+.. . ..+..+.|.+.|..|++.++....+.-.
T Consensus 17 ~~e~R~~ik~~~P~~~-~--~~eisK~lge~Wk~ls~eeK~~y~~~A~ 61 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS-D--EADIIKEGMIRFRVLSTEERKVWANKAK 61 (81)
T ss_dssp HHHHHHHHHHHCTTCC-S--HHHHHHHHHHHHSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCc-h--hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456777778899874 1 3689999999999999888777665443
No 265
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=25.75 E-value=1e+02 Score=19.78 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH----NAEISKRLGKRWKLLKDSDKIPFIQ 54 (79)
T ss_dssp HHHHHHHHHTTSTTSC----HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4556666777788754 3688999999999999777666554
No 266
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=25.62 E-value=80 Score=20.98 Aligned_cols=41 Identities=15% Similarity=0.329 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 29 ~~~~r~~~~~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~y~~ 69 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKD----NRAISVILGDRWKKMKNEERRMYTL 69 (87)
T ss_dssp HHHTHHHHHHHCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 4556666777888753 3688899999999999777665544
No 267
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=25.58 E-value=87 Score=19.97 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
.+.+|...+.-||+.. ..+..+.|.+.|..|++ |..|.
T Consensus 15 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~---K~~y~ 52 (73)
T 3nm9_A 15 LNSARESIKRENPGIK----VTEVAKRGGELWRAMKD---KSEWE 52 (73)
T ss_dssp HHHHHHHHHHHSSSCC----HHHHHHHHHHHHHHCSC---CHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCc---hHHHH
Confidence 3455666777888864 37889999999999997 54443
No 268
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.54 E-value=68 Score=21.61 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccC
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLM 158 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~ 158 (201)
.+..|...+.-||+.. ..+..+.|.+.|..|++.++....+.-.
T Consensus 19 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~A~ 62 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS----LEDATLQIEELWKTLSEEEKLKYEEKAT 62 (92)
T ss_dssp HHHHHHHHHHHCCSSC----HHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445666677788864 3688999999999999887776665443
No 269
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.52 E-value=76 Score=24.37 Aligned_cols=26 Identities=15% Similarity=-0.027 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 43 KHMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 43 ~~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
+.+|..+++.|++.+|.+.+.++...
T Consensus 79 lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 79 AAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 55677789999999999999999763
No 270
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=24.90 E-value=2.8e+02 Score=24.11 Aligned_cols=25 Identities=8% Similarity=-0.069 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh
Q 037661 44 HMAEELFKEEKIDSALCVVDRARMK 68 (201)
Q Consensus 44 ~~A~~~l~~~d~~~A~~~~~~a~~~ 68 (201)
.+|..+...|+|++|+.+++++..+
T Consensus 345 nLa~~y~~~g~~~eA~~~~~~aL~i 369 (433)
T 3qww_A 345 QAMGVCLYMQDWEGALKYGQKIIKP 369 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 4577788899999999999998854
No 271
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=24.11 E-value=2.2e+02 Score=24.90 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 36 DKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 36 ~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
-+.|..+.+.|...+-.++++++...|+++....|..+
T Consensus 11 i~~aR~vyer~l~~~P~~~~e~~~~iferal~~~ps~~ 48 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLD 48 (493)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHH
T ss_pred hHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHH
Confidence 34566777779999999999999999999999888543
No 272
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=23.99 E-value=1.8e+02 Score=24.37 Aligned_cols=43 Identities=7% Similarity=-0.098 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHH
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYV 83 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 83 (201)
..+-+|..+...|++++|++.+.+.....|....+...+..+.
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vq 144 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIE 144 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHH
Confidence 3467789999999999999999999777763333443333333
No 273
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.88 E-value=1.1e+02 Score=20.71 Aligned_cols=28 Identities=18% Similarity=0.049 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARM 67 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~ 67 (201)
-..+..|+.+-..|+|+.|+.+|+.+.+
T Consensus 13 ~e~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 13 VENVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3456679999999999999999988774
No 274
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=23.84 E-value=2.7e+02 Score=23.55 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=31.5
Q ss_pred hHHHHHHhhCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHh
Q 037661 26 AREALFSKLADKEAEASKHMAEELFK----EEKIDSALCVVDRARMK 68 (201)
Q Consensus 26 ~~~~~~~r~n~~ea~~~~~~A~~~l~----~~d~~~A~~~~~~a~~~ 68 (201)
.+..+....+...+.....++..++. .+|++.|+..+.++...
T Consensus 26 ~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~ 72 (490)
T 2xm6_A 26 NLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ 72 (490)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 34455544455566777888888888 88899999998888765
No 275
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=23.65 E-value=3.8e+02 Score=23.63 Aligned_cols=43 Identities=7% Similarity=0.037 Sum_probs=32.2
Q ss_pred CChhhHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 22 NNPEAREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 22 ~~p~~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
.+++.+..+... +..+++.|..+...|+|++|+.+++++..+.
T Consensus 297 ~s~e~v~~~l~~-----a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~ 339 (490)
T 3n71_A 297 PSQEVVKEMIQF-----SKDTLEKIDKARSEGLYHEVVKLCRECLEKQ 339 (490)
T ss_dssp CCHHHHHHHHHH-----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 344444444333 5667888899999999999999999998764
No 276
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=23.60 E-value=1.1e+02 Score=26.60 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=12.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC
Q 037661 46 AEELFKEEKIDSALCVVDRARMKNPN 71 (201)
Q Consensus 46 A~~~l~~~d~~~A~~~~~~a~~~~p~ 71 (201)
|..++..|++++|+..+++|..++|.
T Consensus 284 al~~l~~gd~d~A~~~l~rAl~Ln~s 309 (372)
T 3ly7_A 284 AVSALVKGKTDESYQAINTGIDLEMS 309 (372)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 33444445555555555555555543
No 277
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=23.44 E-value=1.2e+02 Score=22.79 Aligned_cols=32 Identities=16% Similarity=-0.045 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
-|..++..|..+...||.+.|--+|.+...++
T Consensus 41 sa~~L~r~A~~y~~EGd~E~AYilymRy~~L~ 72 (144)
T 2a9u_A 41 SALKIFKTAEECRLDRDEERAYVLYMKYVTVY 72 (144)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 37889999999999999999999998876553
No 278
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=23.38 E-value=87 Score=27.27 Aligned_cols=41 Identities=12% Similarity=-0.099 Sum_probs=33.7
Q ss_pred hhCHHHHHHHHHHHHH--------------HHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 33 KLADKEAEASKHMAEE--------------LFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 33 r~n~~ea~~~~~~A~~--------------~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
+++.++|.+.++.|.. +.-.|++++|+..+.+|.+++|..+
T Consensus 290 ~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 290 KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 6788888777665543 4578999999999999999999886
No 279
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=23.37 E-value=1.2e+02 Score=21.19 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhC
Q 037661 38 EAEASKHMAEELFK----EEKIDSALCVVDRARMKN 69 (201)
Q Consensus 38 ea~~~~~~A~~~l~----~~d~~~A~~~~~~a~~~~ 69 (201)
.+..+..++..+.. .+|++.|+..+.+|...-
T Consensus 92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 34556777788888 899999999999998763
No 280
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=23.14 E-value=1.8e+02 Score=22.43 Aligned_cols=33 Identities=6% Similarity=0.051 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 41 ASKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 41 ~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
=++--|+=.++.|++.+|+..+.+|..+.|.+.
T Consensus 96 iwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 96 VHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 344456667888999999999999999888764
No 281
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=23.12 E-value=3e+02 Score=22.18 Aligned_cols=30 Identities=10% Similarity=-0.023 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
.-...+|..++..|+++.|+..+.++..+.
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 344456777888999999999999999843
No 282
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=22.99 E-value=1.5e+02 Score=20.64 Aligned_cols=29 Identities=17% Similarity=0.044 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRAR 66 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~ 66 (201)
.|++-++.|+..+..|+|.-|...+..|.
T Consensus 11 ~A~~~L~~A~~~~~~g~y~~a~~~ay~a~ 39 (126)
T 2hsb_A 11 KAEKLVQDAKKEFEMGLYERCCSTAYYAM 39 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 48899999999999999997755444433
No 283
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=22.55 E-value=1.4e+02 Score=23.86 Aligned_cols=69 Identities=13% Similarity=-0.007 Sum_probs=40.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhhccCcchhccccCCCCCHHHHHHHHHHHHHhhC
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAEKKSWYAVLGIRDHRAGVDVIKKRYEALVQLFK 122 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~~~d~Y~vLgv~~~~as~~eIkkaYrkla~~~H 122 (201)
.|..+-+.|+.++|++.+...-..+|-...++.++-.-.|. .+.|+-.|+-- ...-|++.|-.=.-.+|
T Consensus 120 ~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp----~~~d~~~i~~~-----~~~~i~~~y~~d~~~lH 188 (242)
T 3kae_A 120 LGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVP----QKRDKENVRQT-----GRRGIEEEYVSDSIEFH 188 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCC----CCC----------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCC----cccchHHHHhh-----hhccchhhhhhhHHHHH
Confidence 57778899999999999999999999887776665432222 23455555432 23446666654444444
No 284
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=22.12 E-value=1.2e+02 Score=26.29 Aligned_cols=32 Identities=6% Similarity=-0.102 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
-|..+..+|..+...|++++|+..+.+|..+.
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33444556788889999999999999998654
No 285
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=21.85 E-value=1.1e+02 Score=23.39 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhC
Q 037661 38 EAEASKHMAEELFK----EEKIDSALCVVDRARMKN 69 (201)
Q Consensus 38 ea~~~~~~A~~~l~----~~d~~~A~~~~~~a~~~~ 69 (201)
.+..+..++..++. .+++++|+..+.++....
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 180 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK 180 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 34556666777777 778888888888777664
No 286
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=21.84 E-value=84 Score=20.35 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhc
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDL 156 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~ 156 (201)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~ 55 (80)
T 1gt0_D 14 SRGQRRKMAQENPKMH----NSEISKRLGAEWKLLSETEKRPFIDE 55 (80)
T ss_dssp HHHHHHHHHTTSTTSC----HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445666667788743 36888999999999998776665553
No 287
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=21.67 E-value=2.1e+02 Score=19.92 Aligned_cols=29 Identities=14% Similarity=0.014 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRAR 66 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~ 66 (201)
.|.+-++.|+..+..|.|+.|.-.++.|.
T Consensus 10 ~A~~~L~~A~~~~~~g~y~~a~f~a~qa~ 38 (127)
T 1ufb_A 10 QARHNLRHAQGSLGLGDYAWACFAAQQAA 38 (127)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 37888899999999999999887777665
No 288
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=21.55 E-value=2.6e+02 Score=21.02 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 037661 43 KHMAEELFKEEKIDSALCVVDRARM 67 (201)
Q Consensus 43 ~~~A~~~l~~~d~~~A~~~~~~a~~ 67 (201)
..++..++..|+++.|+..+.++..
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~ 34 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACD 34 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3337777777777777777777666
No 289
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=21.40 E-value=1.3e+02 Score=26.76 Aligned_cols=32 Identities=9% Similarity=-0.044 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRARMKN 69 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~ 69 (201)
-|..+..+|..+...|++++|+..+++|..+.
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 33444556778888999999999999988653
No 290
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=21.28 E-value=1.7e+02 Score=20.66 Aligned_cols=28 Identities=18% Similarity=0.162 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037661 39 AEASKHMAEELFKEEKIDSALCVVDRAR 66 (201)
Q Consensus 39 a~~~~~~A~~~l~~~d~~~A~~~~~~a~ 66 (201)
|..=+..|+..+..++|..|+++++++.
T Consensus 34 A~dKl~~A~~Am~~~~y~~Ar~lAEqAe 61 (98)
T 4fm3_A 34 AQDKYAAAQIAMTAESYKKARLLAEQAE 61 (98)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4455777999999999999999999886
No 291
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=21.02 E-value=3e+02 Score=25.52 Aligned_cols=54 Identities=6% Similarity=0.038 Sum_probs=38.9
Q ss_pred CChhhHHHHHHhh--CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhH
Q 037661 22 NNPEAREALFSKL--ADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGL 75 (201)
Q Consensus 22 ~~p~~~~~~~~r~--n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~ 75 (201)
++++.+..+...+ |...-..++..++.+...+++..|+..|+++...+|....+
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~l 102 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANI 102 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHH
Confidence 3444444444332 33445677777888888999999999999999999998644
No 292
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=20.89 E-value=1.7e+02 Score=20.34 Aligned_cols=29 Identities=14% Similarity=-0.009 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037661 38 EAEASKHMAEELFKEEKIDSALCVVDRAR 66 (201)
Q Consensus 38 ea~~~~~~A~~~l~~~d~~~A~~~~~~a~ 66 (201)
.|.+-++.|+..+..|.|+.|.-.++.|.
T Consensus 10 ~A~~dL~~A~~~~~~g~y~~a~f~aqQa~ 38 (122)
T 1wol_A 10 QAERDLEEARYAKSGGYYELACFLSQQCA 38 (122)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 37888899999999999999887777665
No 293
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.79 E-value=95 Score=26.91 Aligned_cols=32 Identities=13% Similarity=-0.013 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch
Q 037661 42 SKHMAEELFKEEKIDSALCVVDRARMKNPNHQ 73 (201)
Q Consensus 42 ~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~ 73 (201)
..+.|+-+++.||+++|.+.+.+++..+....
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~ 165 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTG 165 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH
Confidence 45789999999999999999999998776654
No 294
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3
Probab=20.68 E-value=89 Score=27.32 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=46.0
Q ss_pred cccCCCCCChhhHHHHHHh-------h----CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 037661 15 SLSSSPFNNPEAREALFSK-------L----ADKEAEASKHMAEELFKEEKIDSALCVVDRARMKNP 70 (201)
Q Consensus 15 ~~~~~~~~~p~~~~~~~~r-------~----n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p 70 (201)
++-.+++.||+.-+.+... . -..++++...+|..+++.|++..|.-.+-.|..+..
T Consensus 63 ~~f~~Hfydp~~~~~~~~~~~w~~~~~~~~tA~~~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy~~ 129 (370)
T 1olp_A 63 SLYQDHFWDPDTDHNFTQDNKWYLSYAVPDNAESQTRKFATLAKNEWDKGNYEKAAWYLGQGMHYFG 129 (370)
T ss_dssp TTCGGGCCBTTTTBCHHHHSGGGGGGCCSCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCCCcccccccccccCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 4667899999888877444 2 367889999999999999999999999998886653
No 295
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=20.46 E-value=2.1e+02 Score=21.97 Aligned_cols=40 Identities=5% Similarity=0.094 Sum_probs=25.5
Q ss_pred hHHHHHHhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037661 26 AREALFSKLADKEAEASKHMAEELFKEEKIDSALCVVDRAR 66 (201)
Q Consensus 26 ~~~~~~~r~n~~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~ 66 (201)
.+..+..+ ++..-..|......+|..+||+.|...+.+.+
T Consensus 122 ~l~~l~~~-~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~ 161 (181)
T 3uo3_A 122 GVKLLEKQ-NKERIQDIEAQLGQCYNDKDYAAAVKLTVELK 161 (181)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34444333 44445566666777888889988877766554
No 296
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=20.45 E-value=1e+02 Score=21.76 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=15.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 037661 45 MAEELFKEEKIDSALCVVDRARMKNPNH 72 (201)
Q Consensus 45 ~A~~~l~~~d~~~A~~~~~~a~~~~p~~ 72 (201)
..++....++.+.++..+.+...+.++.
T Consensus 20 ~L~k~~~~~~~~~~l~~L~~L~~~~iT~ 47 (103)
T 1wjt_A 20 KLEKMVSRKKTEGALDLLKKLNSCQMSI 47 (103)
T ss_dssp HHHHHHHTTCCSSHHHHHHHHHTSCCCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCCCCCH
Confidence 3555555555566666666665554444
No 297
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.39 E-value=2.8e+02 Score=20.85 Aligned_cols=104 Identities=11% Similarity=0.103 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchhHHhhHHHHHHHHHhhh--cc----CcchhccccCCCCCHHHHHHH
Q 037661 40 EASKHMAEELFKEEKIDSALCVVDRARMKNPNHQGLNSHFACYVVHKLAAE--KK----SWYAVLGIRDHRAGVDVIKKR 113 (201)
Q Consensus 40 ~~~~~~A~~~l~~~d~~~A~~~~~~a~~~~p~~~~~~~~l~~~~v~~~~~~--~~----d~Y~vLgv~~~~as~~eIkka 113 (201)
.++..+-+.||..+|.++|...++... .|... ..+...+-...+..+ .+ ....-| ... -.+.++|.+.
T Consensus 11 kk~~~ii~EYf~~~D~~Ea~~~l~eL~--~p~~~--~~~V~~~I~~aldrk~~ere~~s~LL~~L-~~~-~ls~~~i~~G 84 (165)
T 2rg8_A 11 KTLTPIIQEYFEHGDTNEVAEMLRDLN--LGEMK--SGVPVLAVSLALEGKASHREMTSKLLSDL-CGT-VMSTTDVEKS 84 (165)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHT--CSGGG--GHHHHHHHHHHHTSCHHHHHHHHHHHHHH-BTT-TBCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhC--CcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHC-CCCHHHHHHH
Confidence 456778889999999999999998754 23221 111111111100000 00 111122 235 7789999999
Q ss_pred HHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhhccCC
Q 037661 114 YEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYDLLMC 159 (201)
Q Consensus 114 Yrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~~~ 159 (201)
|..+.... ......+-.|++.|..=..|..-|....
T Consensus 85 f~~lle~l----------dDl~iDiP~a~~~la~fiarav~d~~l~ 120 (165)
T 2rg8_A 85 FDKLLKDL----------PELALDTPRAPQLVGQFIARAVGDGILC 120 (165)
T ss_dssp HHHHHHHH----------HHHHHHCTTHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHhC----------hhhcccccchHHHHHHHHHHHHHcCCCC
Confidence 99988766 5556666777777777677777765544
No 298
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=20.17 E-value=1.4e+02 Score=22.01 Aligned_cols=30 Identities=23% Similarity=0.139 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037661 37 KEAEASKHMAEELFKEEKIDSALCVVDRAR 66 (201)
Q Consensus 37 ~ea~~~~~~A~~~l~~~d~~~A~~~~~~a~ 66 (201)
+-|++.++.|+.++..||...|-.-+-+|.
T Consensus 5 ~lAe~yL~EA~ell~kGD~vQAsEK~ykAa 34 (129)
T 2jpu_A 5 TSAEVYYEEAEEFLSKGDLVQACEKYYKAA 34 (129)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 357888899999999999988877666655
No 299
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.14 E-value=86 Score=21.60 Aligned_cols=41 Identities=12% Similarity=0.281 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 29 ~~~~r~~i~~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~ 69 (102)
T 2co9_A 29 FRDTQAAIKGQNPNAT----FGEVSKIVASMWDGLGEEQKQVYKK 69 (102)
T ss_dssp HHHHHHHHHHHCTTSC----HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3445666667788863 3688899999999999777766555
No 300
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=20.07 E-value=1e+02 Score=20.35 Aligned_cols=41 Identities=12% Similarity=0.305 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHcCChhHHHHhh
Q 037661 111 KKRYEALVQLFKPDRCSSVGADTANKLINEAWEVLSDPKRREAYD 155 (201)
Q Consensus 111 kkaYrkla~~~HPDk~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD 155 (201)
...+|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 16 ~~~~r~~~~~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~y~~ 56 (85)
T 1j46_A 16 SRDQRRKMALENPRMR----NSEISKQLGYQWKMLTEAEKWPFFQ 56 (85)
T ss_dssp HHHHHHHHHHHSTTSC----HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 3455666667788753 3688899999999999777655544
Done!