BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037666
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA+ ++ V+ LLK + D+ K+K G T AA G +EIVE +K
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGA--DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLL 110
D+ DG P+ AA G + V +L
Sbjct: 93 DV-NAKDKDGYTPLHLAAREGHLEIVEVL 120
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA+ ++ V+ LLK + D+ K+K G T AA G +EIVE +K
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGA--DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 82 DI 83
D+
Sbjct: 126 DV 127
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 29 AAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNKDIAMVPG 88
AA+A D V+ L M + D+ K+K G T AA G +EIVE +K D+
Sbjct: 9 AARAGQDDEVRIL--MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKD 65
Query: 89 GDGTLPIVRAAALGQRQTVVLL 110
DG P+ AA G + V +L
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVL 87
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA+ ++ V+ LLK + D+ K+K G T AA G +EIVE +K
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGA--DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLL 110
D+ DG P+ AA G + V +L
Sbjct: 93 DV-NAKDKDGYTPLHLAAREGHLEIVEVL 120
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA+ ++ V+ LLK + D+ K+K G T AA G +EIVE +K
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGA--DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 82 DI 83
D+
Sbjct: 126 DV 127
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 29 AAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNKDIAMVPG 88
AA+A D V+ L M + D+ K+K G T AA G +EIVE +K D+
Sbjct: 9 AARAGQDDEVRIL--MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKD 65
Query: 89 GDGTLPIVRAAALGQRQTVVLL 110
DG P+ AA G + V +L
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVL 87
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA+ ++ V+ LLK + D+ K+K G T AA G +EIVE +K
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLK--AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLL 110
D+ DG P+ AA G + V +L
Sbjct: 105 DV-NAKDKDGYTPLHLAAREGHLEIVEVL 132
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA+ ++ V+ LLK + D+ K+K G T AA G +EIVE +K
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLK--AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 82 DI 83
D+
Sbjct: 138 DV 139
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 19 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMK 78
++LG L AA+A D V+ L M + D+ K+K G T AA G +EIVE +K
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRIL--MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 68
Query: 79 GNKDIAMVPGGDGTLPIVRAAALGQRQTVVLL 110
D+ DG P+ AA G + V +L
Sbjct: 69 AGADV-NAKDKDGYTPLHLAAREGHLEIVEVL 99
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 20 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKG 79
N G T LH+AA ++ V+ LLK + D+ + G T AA +G +EIVE +K
Sbjct: 45 NDGYTPLHLAASNGHLEIVEVLLK--NGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 80 NKDIAMVPGGDGTLPIVRAAALGQRQTVVLL 110
D+ DG P+ AA G + V +L
Sbjct: 103 GADVNAYD-NDGHTPLHLAAKYGHLEIVEVL 132
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 20 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVE 74
N G+T LH+AA+ ++ V+ LLK + D+ ++K G TAF + +G ++ E
Sbjct: 111 NDGHTPLHLAAKYGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAE 163
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA+ ++ VK LL+ + D+ K+K G T AA +G +E+V+ ++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLLYE 112
D+ +G P+ AA G + V LL E
Sbjct: 60 DVN-AKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 20 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKG 79
N G T LH+AA + ++ V+ LLK + D+ + G T AA G +EIVE +K
Sbjct: 45 NTGTTPLHLAAYSGHLEIVEVLLKHGA--DVDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 80 NKDIAMVPGGDGTLPIVRAAALGQRQTVVLL 110
D+ + DG P+ AA G + V +L
Sbjct: 103 GADVNAMD-SDGMTPLHLAAKWGYLEIVEVL 132
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVE 74
G T LH+AA+ ++ V+ LLK + D+ ++K G TAF + +G ++ E
Sbjct: 113 GMTPLHLAAKWGYLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAE 163
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA+ ++ VK LL+ + D+ K+K G T AA +G +E+V+ ++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLLYE 112
D+ +G P+ AA G + V LL E
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA+ ++ VK LL+ + D+ K+K G T AA +G +E+V+ ++
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLLYE 112
D+ +G P+ AA G + V LL E
Sbjct: 93 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH AA+ + VK L+ + D+ K+ G T YAA G EIV+ +
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLISKGA--DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 94
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLLYEK 113
D+ DG P+ AA G ++ V LL K
Sbjct: 95 DV-NAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH AA+ + VK LL + D K+ G T YAA +G EIV+ +
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSKGA--DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 94
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLLYEKTKGSLTDD 121
D DG P+ AA G ++ V LL K T D
Sbjct: 95 D-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSD 133
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 21 LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGN 80
LG+T LH+AA+ ++ V+ LLK + D+ + G T AA +G +EIVE +K
Sbjct: 46 LGHTPLHLAAKTGHLEIVEVLLKYGA--DVNAWDNYGATPLHLAADNGHLEIVEVLLKHG 103
Query: 81 KDIAMVPGGDGTLPIVRAAALGQRQTVVLL 110
D+ +G P+ AA G + V +L
Sbjct: 104 ADV-NAKDYEGFTPLHLAAYDGHLEIVEVL 132
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 20 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKG 79
N G T LH+AA ++ V+ LLK + D+ K+ G T AA G +EIVE +K
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGA--DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 80 NKDI 83
D+
Sbjct: 136 GADV 139
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA ++ V+ LLK + D+ K+ +G T AA G +EIVE +K
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLK--NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGA 104
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLLYEK 113
D+ G P+ AA G + V +L +
Sbjct: 105 DVN-ASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 21 LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGN 80
LG T LH+AA+ ++ V+ LLK + D+ + G T AA G +EIVE +K
Sbjct: 79 LGVTPLHLAARRGHLEIVEVLLK--NGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Query: 81 KDI 83
D+
Sbjct: 137 ADV 139
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH AA+ + VK L+ + D+ K+ G T +AA +G E+V+ +
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKGA--DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 94
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLLYEK 113
D+ DG P+ AA G ++ V LL K
Sbjct: 95 DV-NAKDSDGRTPLHHAAENGHKEVVKLLISK 125
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 21 LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGN 80
LG+T LH+AA ++ V+ LLK + D+ K+ G T AA G +EIVE +K
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLK--NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYG 136
Query: 81 KDI 83
D+
Sbjct: 137 ADV 139
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 21 LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGN 80
+G T LH+AA ++ V+ LLK + D+ + +G T AA G +EIVE +K
Sbjct: 46 VGWTPLHLAAYWGHLEIVEVLLK--NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNG 103
Query: 81 KDIAMVPGGDGTLPIVRAAALGQRQTVVLL 110
D+ +G P+ AA G + V +L
Sbjct: 104 ADVN-AKDDNGITPLHLAANRGHLEIVEVL 132
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA ++ V+ LLK + D+ K+ G T + AA G +EIVE +K
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGA--DVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 82 DI 83
D+
Sbjct: 126 DV 127
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA ++ V+ LL+ + D+ + G T AA G +EIVE +K
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLR--NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLL 110
D+ G P+ AA G + V +L
Sbjct: 93 DV-NAKDATGITPLYLAAYWGHLEIVEVL 120
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 20 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKG 79
++G T LH+AA ++ V+ LLK + D+ + +G T AA G +E+VE +K
Sbjct: 45 HVGWTPLHLAAYFGHLEIVEVLLK--NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKN 102
Query: 80 NKDIAMVPGGDGTLPIVRAAALGQRQTVVLL 110
D+ +G P+ AA +G + V +L
Sbjct: 103 GADVN-ANDHNGFTPLHLAANIGHLEIVEVL 132
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 21 LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGN 80
LG T LH+AA ++ V+ LLK + D+ + G T AA G +EIVE +K
Sbjct: 79 LGVTPLHLAADRGHLEVVEVLLK--NGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG 136
Query: 81 KDI 83
D+
Sbjct: 137 ADV 139
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G + LH+AA A + VK LL + + N+ GCT YAA EI ++G
Sbjct: 73 GWSPLHIAASAGXDEIVKALL--VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTV-VLLYEKTKGSLTDDE 122
+ D T + RAAA G + V +LL+ K ++ D E
Sbjct: 131 NPDAKDHYDAT-AMHRAAAKGNLKMVHILLFYKASTNIQDTE 171
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 35.8 bits (81), Expect = 0.037, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
GNT LH AA+ + VK+LL D+ ++K G T AA +G EIV+ +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLS--KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLLYEK 113
D+ DG P A G + V LL K
Sbjct: 67 DVN-ARSKDGNTPEHLAKKNGHHEIVKLLDAK 97
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G + LH+AA A + VK LL + + N+ GCT YAA EI ++G
Sbjct: 73 GWSPLHIAASAGRDEIVKALL--VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTV-VLLYEKTKGSLTDDE 122
+ D T + RAAA G + V +LL+ K ++ D E
Sbjct: 131 NPDAKDHYDAT-AMHRAAAKGNLKMVHILLFYKASTNIQDTE 171
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G + LH+AA A + VK LL + + +N GCT YAA EI ++G
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN--GCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTV-VLLYEKTKGSLTDDE 122
+ + T + RAAA G + + +LLY K ++ D E
Sbjct: 131 NPDAKDHYEAT-AMHRAAAKGNLKMIHILLYYKASTNIQDTE 171
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G + LH+AA A + VK LL + + +N GCT YAA EI ++G
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN--GCTPLHYAASKNRHEIAVMLLEGGA 131
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTV-VLLYEKTKGSLTDDE 122
+ + T + RAAA G + + +LLY K ++ D E
Sbjct: 132 NPDAKDHYEAT-AMHRAAAKGNLKMIHILLYYKASTNIQDTE 172
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
GNT LH+AA + ++ V+ LLK + D+ + G T AA G +EIVE +K
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGA--DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGA 104
Query: 82 DI 83
D+
Sbjct: 105 DV 106
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 20 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVE 74
N G+T LH+AA ++ V+ LLK + D+ ++K G TAF + +G ++ E
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAE 130
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AAQ ++ V+ LLK + D+ ++ G T AA G +EIVE +K
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGA--DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
Query: 82 DI 83
D+
Sbjct: 105 DV 106
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 9 KYEDEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSG 68
KY ++ E N G T LH+AA ++ V+ LLK + D+ ++K G TAF + +G
Sbjct: 68 KYGADVNAE-DNFGITPLHLAAIRGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNG 124
Query: 69 MVEIVE 74
++ E
Sbjct: 125 NEDLAE 130
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 2 VAKDIYDKYEDEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAF 61
V K +YD+ +ITN G T LH+A + + L++ ++ + K+K
Sbjct: 87 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI--KDKFNQIPL 144
Query: 62 FYAAGSGMVEIVEEAMKGNKDIAMVPGGDGTLPIVRAAALGQRQTVVLLYEK 113
AA G ++++E K G P+ A A G VLL EK
Sbjct: 145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 2 VAKDIYDKYEDEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAF 61
V K +YD+ +ITN G T LH+A + + L++ ++ + K+K
Sbjct: 87 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI--KDKFNQIPL 144
Query: 62 FYAAGSGMVEIVEEAMKGNKDIAMVPGGDGTLPIVRAAALGQRQTVVLLYEK 113
AA G ++++E K G P+ A A G VLL EK
Sbjct: 145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 18 ITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAM 77
+ N G T LH+AA + ++ V+ LLK + D A + G T AA +G +EIVE +
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA--DVYGFTPLHLAAMTGHLEIVEVLL 100
Query: 78 KGNKDIAMVPGGDGTLPIVRAAALGQRQTVVLL 110
K D+ G+ P+ AA G + V +L
Sbjct: 101 KYGADVNAFD-MTGSTPLHLAADEGHLEIVEVL 132
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA+ + VK LL + D K+ G T AA +G E+V+ +
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGA--DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 94
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLLYEKTKGSLTDD 121
D DG P+ AA G ++ V LL + T D
Sbjct: 95 D-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 2 VAKDIYDKYEDEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAF 61
V K +YD+ +ITN G T LH+A + + L++ ++ + K+K
Sbjct: 87 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI--KDKFNQIPL 144
Query: 62 FYAAGSGMVEIVEEAMKGNKDIAMVPGGDGTLPIVRAAALGQRQTVVLLYEK 113
AA G ++++E K G P+ A A G VLL EK
Sbjct: 145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA ++ V+ LLK + D+ ++ G T AA G +EIVE +K
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKYGA--DVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 82 DI 83
D+
Sbjct: 138 DV 139
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G+T LH+AA + V+ LLK + D+ ++ G T AA +G +EIVE +K
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGA--DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGA 104
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLL 110
D+ G P+ AA G + V +L
Sbjct: 105 DV-NAQDAYGLTPLHLAADRGHLEIVEVL 132
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVE 74
G T LH+AA ++ V+ LLK + D+ ++K G TAF + +G ++ E
Sbjct: 113 GLTPLHLAADRGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAE 163
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA ++ V+ LLK + D+ + +G T AA G +EIVE +K
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGA--DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLL 110
D+ V G P+ AA +G + V +L
Sbjct: 105 DVNAVDTW-GDTPLHLAAIMGHLEIVEVL 132
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 21 LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGN 80
+G+T LH+AA ++ V+ LLK + D+ + G T AA G +EIVE +K
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKHGA--DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 81 KDI 83
D+
Sbjct: 137 ADV 139
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G+T LH+AA+ ++ V+ LLK + D+ + G T AA G +EIVE +K
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLK--NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Query: 82 DIAMVPGGD--GTLPIVRAAALGQRQTVVLL 110
D V D G+ P+ AA G + V +L
Sbjct: 105 D---VNADDTIGSTPLHLAADTGHLEIVEVL 132
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 9 KYEDEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSG 68
KY ++ + T +G+T LH+AA ++ V+ LLK + D+ ++K G TAF + +G
Sbjct: 101 KYGADVNADDT-IGSTPLHLAADTGHLEIVEVLLKYGA--DVNAQDKFGKTAFDISIDNG 157
Query: 69 MVEIVE 74
++ E
Sbjct: 158 NEDLAE 163
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA ++ V+ LLK + D+ + G T AA G +EIVE +K
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLK--NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA 96
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLL 110
D+ G P+ AA GQ + V +L
Sbjct: 97 DVNAYDRA-GWTPLHLAALSGQLEIVEVL 124
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA ++ V+ LLK + D+ +K+G T AA G +EIVE +K
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGA--DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGA 104
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLL 110
D+ G P+ AA G + V +L
Sbjct: 105 DVNATDTY-GFTPLHLAADAGHLEIVEVL 132
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 21 LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGN 80
+G+T LH+AA ++ V+ LLK + D+ + G T AA +G +EIVE +K
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLK--NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG 136
Query: 81 KDI 83
D+
Sbjct: 137 ADV 139
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVE 74
G T LH+AA A ++ V+ LLK + D+ ++K G TAF + +G ++ E
Sbjct: 113 GFTPLHLAADAGHLEIVEVLLKYGA--DVNAQDKFGKTAFDISIDNGNEDLAE 163
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 20 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVE 74
N G T LH+AA A+ ++ V+ LLK + D+ ++K G TAF + +G ++ E
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAE 130
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G+T LH+AA ++ V+ LLK + D+ G T AA + +EIVE +K
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLK--NGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGA 104
Query: 82 DI 83
D+
Sbjct: 105 DV 106
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA ++ V+ LLK + D+ + G T AA G +EIVE +K
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGA--DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 82 DIAMVPGGDGTLPIVRAAALGQRQTVVLL 110
D+ V G P+ AA +G + V +L
Sbjct: 105 DVNAVDTW-GDTPLHLAAIMGHLEIVEVL 132
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G+T LH+AA ++ V+ LLK + D+ + G T AA G +EIVE +K
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGA--DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 82 DI 83
D+
Sbjct: 138 DV 139
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCT---AFFYAAGSGMVEIVEEAMK 78
G TALH+AA+ + D K LL+ ++ D ++ +G T A A G+ +I+
Sbjct: 22 GETALHLAARYSRSDAAKRLLE--ASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRA 79
Query: 79 GNKDIAMVPGGDGTLPIVRAAALG 102
+ D M DGT P++ AA L
Sbjct: 80 TDLDARM---HDGTTPLILAARLA 100
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 20 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKG 79
N+G T LH A A+ + LL+ +T DL + G T AA + ++E+ +
Sbjct: 53 NMGRTPLHAAVSADAQGVFQILLRNRAT-DLDARMHDGTTPLILAARLALEGMLEDLINS 111
Query: 80 NKDIAMV 86
+ D+ V
Sbjct: 112 HADVNAV 118
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 22 GNTALHVAAQANCIDFVKELL-KMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGN 80
G TALH AAQ + VK L+ + S +D K+++ G T AA G +E+V ++
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKD--KQDEDGKTPIXLAAQEGRIEVVXYLIQQG 336
Query: 81 KDIAMVPGGDGT 92
+ V D T
Sbjct: 337 ASVEAVDATDHT 348
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCT---AFFYAAGSGMVEIVEEAMK 78
G TALH+AA+ + D K LL+ ++ D ++ +G T A A G+ +I+
Sbjct: 25 GETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82
Query: 79 GNKDIAMVPGGDGTLPIVRAAALG 102
+ D M DGT P++ AA L
Sbjct: 83 TDLDARM---HDGTTPLILAARLA 103
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 21 LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGN 80
LG + LH+AAQ + LL+ + D + K+ T AA G IVE +K
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRAGVSRD--ARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Query: 81 KDI 83
D+
Sbjct: 91 ADV 93
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 19 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMK 78
T + T LH+AA + V+ LLK + D+ K+ + TA +A E+VE +K
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGA--DVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Query: 79 GNKDI 83
D+
Sbjct: 122 YGADV 126
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCT---AFFYAAGSGMVEIVEEAMK 78
G TALH+AA+ + D K LL+ ++ D ++ +G T A A G+ +I+
Sbjct: 57 GETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 79 GNKDIAMVPGGDGTLPIVRAAAL 101
+ D M DGT P++ AA L
Sbjct: 115 TDLDARM---HDGTTPLILAARL 134
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCT---AFFYAAGSGMVEIVEEAMK 78
G TALH+AA+ + D K LL+ ++ D ++ +G T A A G+ +I+
Sbjct: 58 GETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 115
Query: 79 GNKDIAMVPGGDGTLPIVRAAAL 101
+ D M DGT P++ AA L
Sbjct: 116 TDLDARM---HDGTTPLILAARL 135
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNK 81
G T LH+AA ++ V+ LLK + D+ + G T AA G +EIVE +K
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLLKYGA--DVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 82 DI 83
D+
Sbjct: 138 DV 139
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVE 74
G T LH+AA+ ++ V+ LLK + D+ ++K G TAF + +G ++ E
Sbjct: 113 GYTPLHLAAEDGHLEIVEVLLKYGA--DVNAQDKFGKTAFDISIDNGNEDLAE 163
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 19 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMK 78
++LG L AA+A D V+ L M + D+A K+K G T AA +G +E+V+ ++
Sbjct: 22 SDLGKKLLE-AARAGQDDEVRIL--MANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Query: 79 GNKDI 83
D+
Sbjct: 79 AGADV 83
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 34/161 (21%)
Query: 24 TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAM-KGNKD 82
T L AA+ N ++ VK L+K + D K+ G T AA G E+V+ + G D
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGALVD--PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD 103
Query: 83 IAMVPGGDGTLPIVRAAALGQRQTVVLLYEKTKG-SLTDDE------------CIELLVK 129
+ G G P++ A V LL K ++ D+E C+++
Sbjct: 104 VNCQDDG-GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162
Query: 130 LI--ETDLYAVALRLLKDRPQLATKRDRNEETALHVLARKN 168
L+ + DL+AV + D P LH+ AR+N
Sbjct: 163 LLAAKCDLHAVNIH--GDSP-------------LHIAAREN 188
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 18 ITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVE 74
+ + G T LH+AA+ ++ V+ LLK + D+ + G T AA G +EIVE
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGA--DVNASDSWGRTPLHLAATVGHLEIVE 97
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVE 74
G T LH A Q + D V+ LL+ + L KKN G T F AA +G V++++
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKN--GATPFILAAIAGSVKLLK 109
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 18 ITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVE 74
+ + G T LH+AA+ ++ V+ LLK + D+ ++ G T AA G +EIVE
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGA--DVNARDIWGRTPLHLAATVGHLEIVE 97
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVE 74
G T LH A Q + D V+ LL+ + L KKN G T F AA +G V++++
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKN--GATPFLLAAIAGSVKLLK 89
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVE 74
G+T LH+AA ++ V+ LLK + D+ ++K G TAF + +G ++ E
Sbjct: 113 GHTPLHLAAMFGHLEIVEVLLK--NGADVNAQDKFGKTAFDISIDNGNEDLAE 163
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 29 AAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNKDI 83
AA+A D V+ L M + D+ K+K G T AA G +EIVE +K D+
Sbjct: 9 AARAGQDDEVRIL--MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 29 AAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMKGNKDIAMVPG 88
AA+A D V+ L M + D+ ++K+G T AA + +EIVE +K D+ +
Sbjct: 21 AARAGQDDEVRIL--MANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID- 77
Query: 89 GDGTLPIVRAAALGQRQTVVLL 110
G P+ A G + V +L
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVL 99
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCT---AFFYAAGSGMVEIVEEAMK 78
G TALH+AA + D K LL+ ++ D ++ +G T A A G+ +I+
Sbjct: 57 GATALHLAAAYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 79 GNKDIAMVPGGDGTLPIVRAAAL 101
+ D M DGT P++ AA L
Sbjct: 115 TDLDARM---HDGTTPLILAARL 134
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMK 78
G T LH+AAQ + V LL + +L NK G T A G V + + +K
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLG--NKSGLTPLHLVAQEGHVPVADVLIK 299
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 19 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVE 74
T G+T LH+AA+ ++ V LL+ +++ A K G T AA G V + E
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEKEASQ--ACMTKKGFTPLHVAAKYGKVRVAE 163
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 22 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVEEAMK--G 79
G TALHVA C + V+ LL+ + D A K G + +A + + +V+ ++
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADID-AVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174
Query: 80 NKDIAMVPG--------GDGTLPIVR 97
N + M G G G LP+VR
Sbjct: 175 NVNAQMYSGSSALHSASGRGLLPLVR 200
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 18 ITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAGSGMVEIVE 74
+ + G T LH+AA+ ++ V+ LLK + D+ + G T AA G +EIVE
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGA--DVNASDIWGRTPLHLAATVGHLEIVE 97
>pdb|3LD1|A Chain A, Crystal Structure Of Ibv Nsp2a
Length = 359
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 60 AFFYAAGSGMVEIVEEAMKGNKDIAMVPGGDGTLPIVRAAALGQRQTVVLLYEKTK 115
AFF A +V+ + A +G K +V GT +VR G R + LL +K +
Sbjct: 259 AFFREAAVKIVDNIPNAPRGTKGFEVVGNAKGTQVVVR----GMRNDLTLLDQKAE 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,526,325
Number of Sequences: 62578
Number of extensions: 342878
Number of successful extensions: 874
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 127
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)