Query 037667
Match_columns 69
No_of_seqs 79 out of 81
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 03:13:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 4.5E-30 9.7E-35 173.9 5.4 61 3-65 44-105 (118)
2 PF05617 Prolamin_like: Prolam 99.8 4.2E-21 9.1E-26 114.3 3.9 55 6-60 1-59 (70)
3 PLN00214 putative protein; Pro 80.6 2 4.3E-05 29.5 2.8 31 15-47 45-76 (115)
4 cd04660 nsLTP_like nsLTP_like: 60.8 8.6 0.00019 22.8 2.2 23 25-47 14-39 (73)
5 PF15062 ARL6IP6: Haemopoietic 51.5 11 0.00025 24.6 1.7 20 47-66 49-68 (85)
6 cd00010 AAI_LTSS AAI_LTSS: Alp 50.0 22 0.00048 19.8 2.6 22 24-45 6-28 (63)
7 smart00499 AAI Plant lipid tra 48.7 11 0.00025 20.7 1.2 19 30-48 22-41 (79)
8 cd01960 nsLTP1 nsLTP1: Non-spe 42.8 27 0.00058 21.1 2.3 33 7-44 3-36 (89)
9 PF14695 LINES_C: Lines C-term 38.1 25 0.00055 19.9 1.6 19 50-68 20-39 (39)
10 PF14368 LTP_2: Probable lipid 36.3 13 0.00029 22.0 0.2 24 25-48 35-61 (96)
11 TIGR01310 L7 60S ribosomal pro 32.0 59 0.0013 24.2 3.1 31 16-56 170-200 (235)
12 PF04109 APG9: Autophagy prote 26.4 46 0.00099 26.2 1.8 33 11-43 328-363 (370)
13 cd00578 L-fuc_L-ara-isomerases 24.0 34 0.00073 26.3 0.6 31 4-36 259-289 (452)
14 cd01959 nsLTP2 nsLTP2: Non-spe 23.3 80 0.0017 18.9 2.1 32 11-48 3-34 (66)
15 PF12607 DUF3772: Protein of u 22.6 43 0.00093 19.7 0.8 11 52-62 35-45 (64)
16 cd06369 PBP1_GC_C_enterotoxin_ 21.4 41 0.00089 26.8 0.7 36 10-45 54-99 (380)
17 cd08347 PcpA_C_like C-terminal 21.4 60 0.0013 21.3 1.4 18 52-69 137-154 (157)
18 PRK13737 conjugal transfer pil 21.4 25 0.00053 27.7 -0.6 16 40-55 31-46 (330)
19 PF04968 CHORD: CHORD ; Inter 20.5 32 0.0007 21.0 -0.1 11 8-18 49-59 (64)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.96 E-value=4.5e-30 Score=173.86 Aligned_cols=61 Identities=18% Similarity=0.391 Sum_probs=57.6
Q ss_pred chhhHHHhhhcccchHHHHHHHHHhcC-CCcChHhhHHHHHhhhcccCCCCCCCcchhHHHHHH
Q 037667 3 GLTECWNALMELNSCSNEIVIFFLNSQ-ADISPDCCCAIDIITRKMWACNAHLSQIYCRRRKHI 65 (69)
Q Consensus 3 ~~~kCWsSl~~l~gC~~EI~~~fl~G~-~~IGpaCCkAi~~i~~~CWP~mfplnp~f~~~~~~~ 65 (69)
.+.||||||++++||+.||++|+++|| ++||++|||||+++| ||||+| |+|||||+.+|..
T Consensus 44 d~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCKAf~~~d-nCwP~~-P~~P~fPp~LK~~ 105 (118)
T PLN00213 44 DITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCKAFLDAD-NCIPKI-PFIPFFPPMLKEQ 105 (118)
T ss_pred cHHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHHHHHhhh-ccccCC-cCCCccchHHHHH
Confidence 467999999999999999999999999 699999999999977 999996 9999999999974
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.83 E-value=4.2e-21 Score=114.32 Aligned_cols=55 Identities=22% Similarity=0.531 Sum_probs=53.9
Q ss_pred hHHHhhhcccchHHHHHHHHHhcC-CCcChHhhHHHHHhhhcccCC---CCCCCcchhH
Q 037667 6 ECWNALMELNSCSNEIVIFFLNSQ-ADISPDCCCAIDIITRKMWAC---NAHLSQIYCR 60 (69)
Q Consensus 6 kCWsSl~~l~gC~~EI~~~fl~G~-~~IGpaCCkAi~~i~~~CWP~---mfplnp~f~~ 60 (69)
|||+++.++++|+.||+.||++|+ .+||++||+||..++++|||+ |||.+|+|.+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~ 59 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKP 59 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccc
Confidence 799999999999999999999999 899999999999999999999 9999999999
No 3
>PLN00214 putative protein; Provisional
Probab=80.63 E-value=2 Score=29.45 Aligned_cols=31 Identities=16% Similarity=0.418 Sum_probs=26.7
Q ss_pred cchHHHHHHHHH-hcCCCcChHhhHHHHHhhhcc
Q 037667 15 NSCSNEIVIFFL-NSQADISPDCCCAIDIITRKM 47 (69)
Q Consensus 15 ~gC~~EI~~~fl-~G~~~IGpaCCkAi~~i~~~C 47 (69)
+-|..||+..++ ||. +-..||+-+...+..|
T Consensus 45 ~KCa~EI~a~i~~N~t--~s~~CC~~LVk~GK~C 76 (115)
T PLN00214 45 PKCALDIIAVVFENGT--LIDPCCNDLVKEGKVC 76 (115)
T ss_pred HhhHHHHHHHHHcCCC--CchHHHHHHHHHhhHH
Confidence 559999999999 443 5789999999999999
No 4
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=60.81 E-value=8.6 Score=22.82 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=16.6
Q ss_pred HHhcCC---CcChHhhHHHHHhhhcc
Q 037667 25 FLNSQA---DISPDCCCAIDIITRKM 47 (69)
Q Consensus 25 fl~G~~---~IGpaCCkAi~~i~~~C 47 (69)
+++|.+ .-.++||.+++.++..|
T Consensus 14 yl~~~~~~~~Ps~~CC~~vk~~~~~C 39 (73)
T cd04660 14 YVTGPNPPPPPSRECCAALRRADLPC 39 (73)
T ss_pred HHcCCCCCCCCCHHHHHHHHcCCcCC
Confidence 345443 46778999999987666
No 5
>PF15062 ARL6IP6: Haemopoietic lineage transmembrane helix
Probab=51.50 E-value=11 Score=24.60 Aligned_cols=20 Identities=10% Similarity=-0.060 Sum_probs=17.1
Q ss_pred ccCCCCCCCcchhHHHHHHH
Q 037667 47 MWACNAHLSQIYCRRRKHIE 66 (69)
Q Consensus 47 CWP~mfplnp~f~~~~~~~~ 66 (69)
=-|-|+|-.||-|+|+|..+
T Consensus 49 ~~PGv~PptPfSp~~~~r~~ 68 (85)
T PF15062_consen 49 SEPGVNPPTPFSPSRKKRFS 68 (85)
T ss_pred cCCCCCCCCCCCHHHHHhhh
Confidence 35899999999999988765
No 6
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=50.01 E-value=22 Score=19.82 Aligned_cols=22 Identities=18% Similarity=0.611 Sum_probs=17.1
Q ss_pred HHHhcC-CCcChHhhHHHHHhhh
Q 037667 24 FFLNSQ-ADISPDCCCAIDIITR 45 (69)
Q Consensus 24 ~fl~G~-~~IGpaCCkAi~~i~~ 45 (69)
.|++|. ....++||.+++.+.+
T Consensus 6 ~y~~~~~~~Ps~~CC~~l~~~~~ 28 (63)
T cd00010 6 SYLTGGATAPPSDCCSGLKSVVK 28 (63)
T ss_pred HHHcCCCCCCChHHHHHHHHHHh
Confidence 455666 5688999999999864
No 7
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=48.67 E-value=11 Score=20.74 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=15.7
Q ss_pred CCcChHhhHHHHHh-hhccc
Q 037667 30 ADISPDCCCAIDII-TRKMW 48 (69)
Q Consensus 30 ~~IGpaCCkAi~~i-~~~CW 48 (69)
......||.++..+ ...|.
T Consensus 22 ~~p~~~CC~~l~~~~~~~C~ 41 (79)
T smart00499 22 APPSQQCCSQLRGLNSAQCR 41 (79)
T ss_pred CCCchHHHHHHHHhcccCCc
Confidence 45678899999999 88785
No 8
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=42.79 E-value=27 Score=21.13 Aligned_cols=33 Identities=24% Similarity=0.563 Sum_probs=22.8
Q ss_pred HHHhhhcccchHHHHHHHHHhcC-CCcChHhhHHHHHhh
Q 037667 7 CWNALMELNSCSNEIVIFFLNSQ-ADISPDCCCAIDIIT 44 (69)
Q Consensus 7 CWsSl~~l~gC~~EI~~~fl~G~-~~IGpaCCkAi~~i~ 44 (69)
|=..+..+..|. .|++|. ..-.++||.++..+.
T Consensus 3 C~~v~~~l~~C~-----~y~~g~~~~Ps~~CC~~v~~l~ 36 (89)
T cd01960 3 CGQVTSLLAPCL-----GYLTGGGPAPSPACCSGVKSLN 36 (89)
T ss_pred HHHHHhhHHhHH-----HHHhCCCCCCChHHhhhhHHHh
Confidence 445555666664 356666 468899999999875
No 9
>PF14695 LINES_C: Lines C-terminus
Probab=38.10 E-value=25 Score=19.89 Aligned_cols=19 Identities=16% Similarity=0.044 Sum_probs=14.6
Q ss_pred CCCCCCcc-hhHHHHHHHhh
Q 037667 50 CNAHLSQI-YCRRRKHIERL 68 (69)
Q Consensus 50 ~mfplnp~-f~~~~~~~~~~ 68 (69)
++||-||- .=+|++++|.|
T Consensus 20 ~LFPYN~~pLLrlL~~~e~l 39 (39)
T PF14695_consen 20 NLFPYNPSPLLRLLEQVESL 39 (39)
T ss_pred CCCCCChHHHHHHHHHhhcC
Confidence 68999985 45778888865
No 10
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=36.25 E-value=13 Score=21.97 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=14.4
Q ss_pred HHhcCCCcChHhhHHHHHh---hhccc
Q 037667 25 FLNSQADISPDCCCAIDII---TRKMW 48 (69)
Q Consensus 25 fl~G~~~IGpaCCkAi~~i---~~~CW 48 (69)
+.++.....++||.+++.+ +.+|-
T Consensus 35 ~~~~~~~Ps~~CC~~l~~~~~~~~~Cl 61 (96)
T PF14368_consen 35 YVTGGPAPSAACCSALKSVVQADPPCL 61 (96)
T ss_dssp HHCC-----HHHHHHHCC----HCCHH
T ss_pred ccCCCCCCCHHHHHHHHHhccCCCCCH
Confidence 5667788999999999997 66663
No 11
>TIGR01310 L7 60S ribosomal protein L7, eukaryotic. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).
Probab=32.01 E-value=59 Score=24.24 Aligned_cols=31 Identities=13% Similarity=0.355 Sum_probs=26.3
Q ss_pred chHHHHHHHHHhcCCCcChHhhHHHHHhhhcccCCCCCCCc
Q 037667 16 SCSNEIVIFFLNSQADISPDCCCAIDIITRKMWACNAHLSQ 56 (69)
Q Consensus 16 gC~~EI~~~fl~G~~~IGpaCCkAi~~i~~~CWP~mfplnp 56 (69)
-|+.|++..+.+|+.+ |..++..=|| |-|||
T Consensus 170 ~ciEDliheI~t~g~~--------fk~i~~~L~P--FrL~~ 200 (235)
T TIGR01310 170 ICIEDLIHEIYTVGPH--------FKEVNNFLWP--FKLSS 200 (235)
T ss_pred ccHHHHHHHHHhCCCC--------HHHHhcCccC--ccCCC
Confidence 3999999999999855 6777777899 99997
No 12
>PF04109 APG9: Autophagy protein Apg9 ; InterPro: IPR007241 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg9 plays a direct role in the formation of the cytoplasm to vacuole targeting and autophagic vesicles, possibly serving as a marker for a specialised compartment essential for these vesicle-mediated alternative targeting pathways [].
Probab=26.35 E-value=46 Score=26.24 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=25.6
Q ss_pred hhcccchHHHHHHHHHhcC---CCcChHhhHHHHHh
Q 037667 11 LMELNSCSNEIVIFFLNSQ---ADISPDCCCAIDII 43 (69)
Q Consensus 11 l~~l~gC~~EI~~~fl~G~---~~IGpaCCkAi~~i 43 (69)
++.++.|+.||+.||-+=. .++|.-|--|--+.
T Consensus 328 ~f~Lp~~a~~IvdF~r~~TV~V~GvG~VCsfA~fdf 363 (370)
T PF04109_consen 328 WFSLPKCADEIVDFFREFTVHVDGVGYVCSFAQFDF 363 (370)
T ss_pred HhcccccHHHHHHHHHhceeecCCCCCeeeeceecc
Confidence 3678999999999998777 56888887664433
No 13
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=23.99 E-value=34 Score=26.30 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=24.5
Q ss_pred hhhHHHhhhcccchHHHHHHHHHhcCCCcChHh
Q 037667 4 LTECWNALMELNSCSNEIVIFFLNSQADISPDC 36 (69)
Q Consensus 4 ~~kCWsSl~~l~gC~~EI~~~fl~G~~~IGpaC 36 (69)
-.+||..+.+. +++.=+..++||.++ |+.+|
T Consensus 259 a~~C~~~l~~~-~~~pcla~s~L~~~g-ip~ac 289 (452)
T cd00578 259 TIQCFEDLTDL-GQLPCLAEQRLNAEG-IPFAC 289 (452)
T ss_pred Eecchhhhccc-CcchhHHHHHhccCC-ceeEE
Confidence 35899999999 888888999999884 43333
No 14
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=23.31 E-value=80 Score=18.87 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=21.9
Q ss_pred hhcccchHHHHHHHHHhcCCCcChHhhHHHHHhhhccc
Q 037667 11 LMELNSCSNEIVIFFLNSQADISPDCCCAIDIITRKMW 48 (69)
Q Consensus 11 l~~l~gC~~EI~~~fl~G~~~IGpaCCkAi~~i~~~CW 48 (69)
.+++..|..-|. .| +.-..+||.+++..+ .|-
T Consensus 3 ~~~L~~C~~ai~----~~-~~Ps~~CC~~Lk~~~-~CL 34 (66)
T cd01959 3 PTQLSPCLPAIL----GG-SPPSAACCAKLKEQQ-SCL 34 (66)
T ss_pred hhhcccCHHHHh----CC-CCCCHHHHHHHhcCC-CCe
Confidence 346667766433 23 567899999999865 674
No 15
>PF12607 DUF3772: Protein of unknown function (DUF3772); InterPro: IPR022249 This domain family is found in bacteria, and is approximately 60 amino acids in length. The family is found in association with PF00924 from PFAM.
Probab=22.61 E-value=43 Score=19.71 Aligned_cols=11 Identities=9% Similarity=0.193 Sum_probs=8.7
Q ss_pred CCCCcchhHHH
Q 037667 52 AHLSQIYCRRR 62 (69)
Q Consensus 52 fplnp~f~~~~ 62 (69)
-||||-||...
T Consensus 35 SpL~P~~W~~~ 45 (64)
T PF12607_consen 35 SPLNPAFWSPA 45 (64)
T ss_pred CCCCHHHHHHH
Confidence 48999998764
No 16
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=21.44 E-value=41 Score=26.85 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=27.1
Q ss_pred hhhcccchHH------HHHHHHHhcC--C--CcChHhhHHHHHhhh
Q 037667 10 ALMELNSCSN------EIVIFFLNSQ--A--DISPDCCCAIDIITR 45 (69)
Q Consensus 10 Sl~~l~gC~~------EI~~~fl~G~--~--~IGpaCCkAi~~i~~ 45 (69)
++.+-+||.+ |+++.+...+ + -+||.|=-|.-.+.+
T Consensus 54 ~~y~~~~C~sstceg~~~l~~l~~~~~~gcv~lGP~CtYat~~~~~ 99 (380)
T cd06369 54 SLYRSRGCRSSTCEGVELLKKLSVTGRLGCVLLGPSCTYATFQMVD 99 (380)
T ss_pred ceeccCCCCcccchHHHHHHHHHhcCccCcEEEcCccceehhhhhh
Confidence 4667789999 9999987655 3 499999877655543
No 17
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=21.42 E-value=60 Score=21.27 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=14.7
Q ss_pred CCCCcchhHHHHHHHhhC
Q 037667 52 AHLSQIYCRRRKHIERLL 69 (69)
Q Consensus 52 fplnp~f~~~~~~~~~~~ 69 (69)
+-|.||.-+||..||..|
T Consensus 137 ~~~~~~~~~~~~~~~~~~ 154 (157)
T cd08347 137 LKLPPFLEPRRAEIEAAL 154 (157)
T ss_pred cCCChhhhhhHHHHHhhc
Confidence 467899999999998654
No 18
>PRK13737 conjugal transfer pilus assembly protein TraU; Provisional
Probab=21.41 E-value=25 Score=27.72 Aligned_cols=16 Identities=38% Similarity=0.681 Sum_probs=14.2
Q ss_pred HHHhhhcccCCCCCCC
Q 037667 40 IDIITRKMWACNAHLS 55 (69)
Q Consensus 40 i~~i~~~CWP~mfpln 55 (69)
++-|++-||-.|||++
T Consensus 31 vNpITDICWsCiFPis 46 (330)
T PRK13737 31 VNPITDICWSCIFPLS 46 (330)
T ss_pred cCcccceeeccccceE
Confidence 5679999999999986
No 19
>PF04968 CHORD: CHORD ; InterPro: IPR007051 Cysteine- and histidine-rich domains (CHORDs) are 60-amino acid modules that bind two zinc ions. They are usually arranged in tandem and are found in all tested eukaryotes, with the exception of yeast, where they are involved in processes ranging from pressure sensing in the heart to maintenance of diploidy in fungi, and exhibit distinct protein-protein interaction specificity. Six cysteine and two histidine residues are invariant within the CHORD domain. Three other residues are also invariant and some positions are confined to positive, negative, or aromatic amino acids [, ]. Silencing of the Caenorhabditis elegansCHORD-containing gene results in semisterility and embryo lethality, suggesting an essential function of the wild-type gene in nematode development. The CHORD domain is sometimes found N-terminal to the CS domain, IPR007052 from INTERPRO, in metazoan proteins, but occurs separately from the CS domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains []. ; PDB: 2XCM_E 2YRT_A.
Probab=20.49 E-value=32 Score=21.01 Aligned_cols=11 Identities=9% Similarity=0.821 Sum_probs=6.8
Q ss_pred HHhhhcccchH
Q 037667 8 WNALMELNSCS 18 (69)
Q Consensus 8 WsSl~~l~gC~ 18 (69)
|+..++++||+
T Consensus 49 F~~Fl~i~GC~ 59 (64)
T PF04968_consen 49 FDEFLKIPGCT 59 (64)
T ss_dssp HHHHTT---SC
T ss_pred HHHHhcCCCCc
Confidence 78899999996
Done!