Query 037667
Match_columns 69
No_of_seqs 79 out of 81
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 04:42:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljo_A Non-specific lipid-tran 39.2 26 0.00088 21.3 2.8 21 24-44 16-36 (93)
2 1bwo_A NS-LTP1, nonspecific li 33.6 36 0.0012 20.2 2.8 33 7-44 3-35 (90)
3 1n89_A Lipid transfer protein; 33.4 35 0.0012 19.3 2.6 20 27-47 15-34 (67)
4 1l6h_A LTP2, non-specific lipi 31.5 33 0.0011 19.5 2.3 21 26-47 15-35 (69)
5 2alg_A Non-specific lipid tran 31.2 34 0.0011 20.4 2.4 33 7-44 4-36 (92)
6 1siy_A LTP 1, NS-LTP1, nonspec 28.4 47 0.0016 19.6 2.7 19 25-43 16-34 (91)
7 1xnl_A ASLV/FP, membrane prote 23.4 30 0.001 17.9 0.9 10 60-69 19-28 (29)
8 1afh_A Maize nonspecific lipid 23.0 68 0.0023 19.0 2.7 33 7-44 4-37 (93)
9 3oaj_A Putative ring-cleaving 22.7 52 0.0018 23.0 2.4 22 48-69 283-304 (335)
10 2knp_A Mcocc-1; disulfide-rich 22.6 22 0.00077 18.7 0.4 8 46-53 18-25 (33)
No 1
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=39.23 E-value=26 Score=21.26 Aligned_cols=21 Identities=24% Similarity=0.632 Sum_probs=16.7
Q ss_pred HHHhcCCCcChHhhHHHHHhh
Q 037667 24 FFLNSQADISPDCCCAIDIIT 44 (69)
Q Consensus 24 ~fl~G~~~IGpaCCkAi~~i~ 44 (69)
.+++|.+...+.||.+++.+.
T Consensus 16 ~Yv~g~~~p~~~CC~gv~~l~ 36 (93)
T 2ljo_A 16 TYLTGGPGPSPQCCGGVKKLL 36 (93)
T ss_dssp HHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHcCCCCCCCchhhHHHHHH
Confidence 356777779999999998874
No 2
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=33.59 E-value=36 Score=20.21 Aligned_cols=33 Identities=15% Similarity=0.438 Sum_probs=21.3
Q ss_pred HHHhhhcccchHHHHHHHHHhcCCCcChHhhHHHHHhh
Q 037667 7 CWNALMELNSCSNEIVIFFLNSQADISPDCCCAIDIIT 44 (69)
Q Consensus 7 CWsSl~~l~gC~~EI~~~fl~G~~~IGpaCCkAi~~i~ 44 (69)
|=..+.++..|.. +++|.+...++||.+++.+.
T Consensus 3 C~~v~~~L~pCl~-----y~~~~~~Ps~~CC~~lk~l~ 35 (90)
T 1bwo_A 3 CGHVDSLVRPCLS-----YVQGGPGPSGQCCDGVKNLH 35 (90)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHhhcccHH-----HHcCCCCCCHHHhHHHHHHH
Confidence 3344555555643 44555447789999999875
No 3
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=33.35 E-value=35 Score=19.26 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=14.8
Q ss_pred hcCCCcChHhhHHHHHhhhcc
Q 037667 27 NSQADISPDCCCAIDIITRKM 47 (69)
Q Consensus 27 ~G~~~IGpaCCkAi~~i~~~C 47 (69)
+|.+...++||.+++.. ..|
T Consensus 15 ~~~~~Ps~~CC~~lk~~-~~C 34 (67)
T 1n89_A 15 LSGAKPSGECCGNLRAQ-QGC 34 (67)
T ss_dssp TTCCCCCHHHHHHHHHH-SSH
T ss_pred cCCCCCCHHHHHhhCCC-CCC
Confidence 44456889999999975 455
No 4
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=31.54 E-value=33 Score=19.47 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=15.1
Q ss_pred HhcCCCcChHhhHHHHHhhhcc
Q 037667 26 LNSQADISPDCCCAIDIITRKM 47 (69)
Q Consensus 26 l~G~~~IGpaCCkAi~~i~~~C 47 (69)
++|.+...++||.+++.. ..|
T Consensus 15 v~~~~~Ps~~CC~~lk~~-~~C 35 (69)
T 1l6h_A 15 IAGGARPTAACCSSLRAQ-QGC 35 (69)
T ss_dssp HTTCCSTTHHHHHHHHHH-HHH
T ss_pred HcCCCCCCHHHHHhhCCC-CCC
Confidence 344456888999999975 455
No 5
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=31.20 E-value=34 Score=20.37 Aligned_cols=33 Identities=21% Similarity=0.624 Sum_probs=21.4
Q ss_pred HHHhhhcccchHHHHHHHHHhcCCCcChHhhHHHHHhh
Q 037667 7 CWNALMELNSCSNEIVIFFLNSQADISPDCCCAIDIIT 44 (69)
Q Consensus 7 CWsSl~~l~gC~~EI~~~fl~G~~~IGpaCCkAi~~i~ 44 (69)
|=..+..+..|.. +++|.+..-++||.+++.+.
T Consensus 4 C~~v~~~L~pCl~-----y~~~~~~p~~~CC~~lk~l~ 36 (92)
T 2alg_A 4 CGQVSSSLAPCIP-----YVRGGGAVPPACCNGIRNVN 36 (92)
T ss_dssp HHHHHHHHGGGHH-----HHHHCSCCCHHHHHHHHHHH
T ss_pred hHHHHHhccCcHH-----HHcCCCCCCHHHHHHHHHHH
Confidence 4444555566654 34455457789999999864
No 6
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=28.39 E-value=47 Score=19.65 Aligned_cols=19 Identities=32% Similarity=0.838 Sum_probs=14.2
Q ss_pred HHhcCCCcChHhhHHHHHh
Q 037667 25 FLNSQADISPDCCCAIDII 43 (69)
Q Consensus 25 fl~G~~~IGpaCCkAi~~i 43 (69)
+++|.+...++||.+++.+
T Consensus 16 yv~~~~~Ps~~CC~~lk~l 34 (91)
T 1siy_A 16 FLQKGGVVPPSCCTGVKNI 34 (91)
T ss_dssp HHTSCSCCCHHHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHH
Confidence 4555544778999999997
No 7
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.45 E-value=30 Score=17.87 Aligned_cols=10 Identities=40% Similarity=0.564 Sum_probs=7.2
Q ss_pred HHHHHHHhhC
Q 037667 60 RRRKHIERLL 69 (69)
Q Consensus 60 ~~~~~~~~~~ 69 (69)
.-+|.||||.
T Consensus 19 qAL~eIERLa 28 (29)
T 1xnl_A 19 QALREIERLA 28 (29)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 4578888873
No 8
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=23.00 E-value=68 Score=19.00 Aligned_cols=33 Identities=18% Similarity=0.556 Sum_probs=21.0
Q ss_pred HHHhhhcccchHHHHHHHHHhcCC-CcChHhhHHHHHhh
Q 037667 7 CWNALMELNSCSNEIVIFFLNSQA-DISPDCCCAIDIIT 44 (69)
Q Consensus 7 CWsSl~~l~gC~~EI~~~fl~G~~-~IGpaCCkAi~~i~ 44 (69)
|=..+..+..|.. +++|.+ .-.++||.+++.+.
T Consensus 4 C~~v~~~L~pCl~-----y~~~~~~~Ps~~CC~gv~~l~ 37 (93)
T 1afh_A 4 CGQVASAIAPCIS-----YARGQGSGPSAGCCSGVRSLN 37 (93)
T ss_dssp SHHHHHHHGGGHH-----HHTTSCCSCCHHHHHHHHHHH
T ss_pred hHHHHHhccCcHH-----HHcCCCCCChHHHHHHHHHHH
Confidence 4344455555543 455553 46679999999985
No 9
>3oaj_A Putative ring-cleaving dioxygenase MHQO; structural genomics, protein structure initiative, PSI-biolo unknown function; 1.40A {Bacillus subtilis subsp}
Probab=22.72 E-value=52 Score=22.96 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=18.1
Q ss_pred cCCCCCCCcchhHHHHHHHhhC
Q 037667 48 WACNAHLSQIYCRRRKHIERLL 69 (69)
Q Consensus 48 WP~mfplnp~f~~~~~~~~~~~ 69 (69)
|-.=+-|.|+|-+||..||+.|
T Consensus 283 lg~~l~lp~~~e~~r~~i~~~l 304 (335)
T 3oaj_A 283 MGEKLMLPVQYEPHRTQIEQGL 304 (335)
T ss_dssp TTSSBCCCGGGGGGHHHHHHHS
T ss_pred hCccccCCchhhhhHHHHHhcC
Confidence 3345789999999999999865
No 10
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=22.56 E-value=22 Score=18.67 Aligned_cols=8 Identities=13% Similarity=0.547 Sum_probs=6.5
Q ss_pred cccCCCCC
Q 037667 46 KMWACNAH 53 (69)
Q Consensus 46 ~CWP~mfp 53 (69)
+|||..-|
T Consensus 18 rcwptvtp 25 (33)
T 2knp_A 18 RCWPTVTP 25 (33)
T ss_dssp CEEECSST
T ss_pred eeccccCC
Confidence 78998766
Done!