BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037669
MSRATKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLG
NRILYREKEFRTADELVQMIAHFYYKARRPSWIDKTAV

High Scoring Gene Products

Symbol, full name Information P value
MRL7
AT4G28590 		protein from Arabidopsis thaliana 3.3e-40
MRL7-L
Mesophyll-cell RNAi Library line 7-like 		protein from Arabidopsis thaliana 3.9e-16

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037669
        (98 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2139850 - symbol:MRL7 "AT4G28590" species:3702...   428  3.3e-40   1
TAIR|locus:2045208 - symbol:MRL7-L "Mesophyll-cell RNAi L...   204  3.9e-16   1


>TAIR|locus:2139850 [details] [associations]
            symbol:MRL7 "AT4G28590" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IMP] [GO:0009658
            "chloroplast organization" evidence=IMP] [GO:0042644 "chloroplast
            nucleoid" evidence=IDA] EMBL:CP002687 GO:GO:0006355 GO:GO:0009658
            GO:GO:0042644 IPI:IPI00543971 RefSeq:NP_194588.2 UniGene:At.50374
            ProteinModelPortal:F4JLC1 SMR:F4JLC1 EnsemblPlants:AT4G28590.1
            GeneID:828977 KEGG:ath:AT4G28590 OMA:MIAHFYY Uniprot:F4JLC1
        Length = 331

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 81/96 (84%), Positives = 87/96 (90%)

Query:     3 RATKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNR 62
             RA+ NWKTLKELEKAI+VYW AKDRLPPRAVKID+NIE DLAYALK KECPQILFL GNR
Sbjct:   232 RASDNWKTLKELEKAIKVYWDAKDRLPPRAVKIDLNIETDLAYALKAKECPQILFLRGNR 291

Query:    63 ILYREKEFRTADELVQMIAHFYYKARRPSWIDKTAV 98
             ILYREK+FRTADELV MIAHFYYKA+RPS +DK  V
Sbjct:   292 ILYREKDFRTADELVHMIAHFYYKAKRPSCVDKANV 327


>TAIR|locus:2045208 [details] [associations]
            symbol:MRL7-L "Mesophyll-cell RNAi Library line 7-like"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IMP] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0009658 "chloroplast organization" evidence=IMP]
            GO:GO:0009570 EMBL:CP002685 GO:GO:0006355 Gene3D:3.40.30.10
            InterPro:IPR012336 SUPFAM:SSF52833 GO:GO:0009658 EMBL:AC006533
            UniGene:At.3459 IPI:IPI00524051 PIR:G84725 RefSeq:NP_180743.1
            UniGene:At.66404 ProteinModelPortal:Q9SKB6 SMR:Q9SKB6 PRIDE:Q9SKB6
            EnsemblPlants:AT2G31840.1 GeneID:817741 KEGG:ath:AT2G31840
            TAIR:At2g31840 InParanoid:Q9SKB6 OMA:LVHNRYK PhylomeDB:Q9SKB6
            ProtClustDB:CLSN2683269 ArrayExpress:Q9SKB6 Genevestigator:Q9SKB6
            Uniprot:Q9SKB6
        Length = 350

 Score = 204 (76.9 bits), Expect = 3.9e-16, P = 3.9e-16
 Identities = 46/89 (51%), Positives = 58/89 (65%)

Query:     3 RATKNWKTLKELEKAIQVYWSAKDRLP-PRAVKIDINIERDLAYALKVKECPQILFLLGN 61
             R  +N K  +ELEKAIQV W+    LP PR V +D  +E DL  ALKV   P+I+F    
Sbjct:   243 RPKENEKFREELEKAIQVIWNCG--LPSPRCVAVDAVVETDLVSALKVSVFPEIIFTKAG 300

Query:    62 RILYREKEFRTADELVQMIAHFYYKARRP 90
             +ILYREK  RTADEL +++A FYY A +P
Sbjct:   301 KILYREKGIRTADELSKIMAFFYYGAAKP 329


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       98        98   0.00091  102 3  11 22  0.48    29
                                                     29  0.45    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  572 (61 KB)
  Total size of DFA:  123 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.62u 0.10s 11.72t   Elapsed:  00:00:01
  Total cpu time:  11.62u 0.10s 11.72t   Elapsed:  00:00:01
  Start:  Tue May 21 04:42:54 2013   End:  Tue May 21 04:42:55 2013

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