BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037669
         (98 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FEW|X Chain X, Structure And Function Of Colicin S4, A Colicin With A
           Duplicated Receptor Binding Domain
          Length = 505

 Score = 28.9 bits (63), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 15  EKAIQVYWSAKDRLPPRAVKIDINIER 41
           EKA Q    A DRLPP   K D+++E+
Sbjct: 195 EKAKQQAEDAWDRLPPNVRKFDVDVEQ 221


>pdb|3FD5|A Chain A, Crystal Structure Of Human Selenophosphate Synthetase 1
           Complex With Ampcp
 pdb|3FD5|B Chain B, Crystal Structure Of Human Selenophosphate Synthetase 1
           Complex With Ampcp
 pdb|3FD6|A Chain A, Crystal Structure Of Human Selenophosphate Synthetase 1
           Complex With Adp And Phosphate
 pdb|3FD6|B Chain B, Crystal Structure Of Human Selenophosphate Synthetase 1
           Complex With Adp And Phosphate
          Length = 394

 Score = 27.3 bits (59), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)

Query: 38  NIERDLAYALKVKECPQILFLLG--NRILYREKE 69
           N+  DL YA+ V EC  +L LLG  N++  RE++
Sbjct: 108 NVLSDL-YAMGVTECDNMLMLLGVSNKMTDRERD 140


>pdb|2JVF|A Chain A, Solution Structure Of M7, A Computationally-Designed
          Artificial Protein
          Length = 96

 Score = 26.2 bits (56), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 10 TLKELEKAIQVYWSAKDRLPPRAVKIDINIERD 42
          T KELE+A+Q    A  R   R V+I I+ E D
Sbjct: 27 TGKELERALQELEKALARAGARNVQITISAEND 59


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,738,078
Number of Sequences: 62578
Number of extensions: 88134
Number of successful extensions: 152
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 3
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)