Query 037669
Match_columns 98
No_of_seqs 111 out of 317
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 03:13:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11509 hydrogenase-1 operon 99.8 5.9E-18 1.3E-22 121.6 9.1 75 5-86 52-126 (132)
2 cd03065 PDI_b_Calsequestrin_N 99.7 2.5E-17 5.5E-22 115.5 9.2 69 12-84 51-119 (120)
3 cd02965 HyaE HyaE family; HyaE 99.7 3.9E-16 8.4E-21 109.2 8.3 71 3-78 40-110 (111)
4 KOG0910 Thioredoxin-like prote 99.7 3.6E-16 7.9E-21 115.0 8.2 74 6-84 75-148 (150)
5 cd02954 DIM1 Dim1 family; Dim1 99.6 2.6E-15 5.7E-20 105.2 9.9 76 7-87 29-114 (114)
6 PLN00410 U5 snRNP protein, DIM 99.6 6.2E-15 1.3E-19 106.8 9.1 79 7-90 38-126 (142)
7 PF00085 Thioredoxin: Thioredo 99.6 3.8E-14 8.1E-19 90.1 10.7 74 5-83 30-103 (103)
8 PHA02278 thioredoxin-like prot 99.6 2.9E-14 6.3E-19 97.0 9.1 68 7-79 29-100 (103)
9 cd02956 ybbN ybbN protein fami 99.5 1.6E-13 3.5E-18 88.0 8.8 72 5-81 25-96 (96)
10 cd02963 TRX_DnaJ TRX domain, D 99.5 2.3E-13 5E-18 91.6 9.5 74 6-83 38-111 (111)
11 COG3118 Thioredoxin domain-con 99.5 1.7E-13 3.8E-18 110.0 8.0 80 2-86 53-132 (304)
12 PRK10996 thioredoxin 2; Provis 99.5 6.8E-13 1.5E-17 93.1 9.7 73 7-84 67-139 (139)
13 cd02949 TRX_NTR TRX domain, no 99.5 6.1E-13 1.3E-17 86.7 8.8 71 6-81 27-97 (97)
14 cd02975 PfPDO_like_N Pyrococcu 99.4 1.6E-12 3.5E-17 88.4 9.2 74 6-85 36-111 (113)
15 TIGR01068 thioredoxin thioredo 99.4 2.8E-12 6E-17 80.9 9.4 74 5-83 27-100 (101)
16 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 1E-12 2.2E-17 85.6 7.1 70 5-79 31-100 (101)
17 cd02948 TRX_NDPK TRX domain, T 99.4 2.6E-12 5.7E-17 84.9 8.9 72 6-83 31-102 (102)
18 cd02985 TRX_CDSP32 TRX family, 99.4 3.9E-12 8.5E-17 84.4 9.6 69 6-81 29-100 (103)
19 cd03006 PDI_a_EFP1_N PDIa fami 99.4 1.6E-12 3.4E-17 89.8 7.9 70 5-79 42-112 (113)
20 PRK09381 trxA thioredoxin; Pro 99.4 4.5E-12 9.7E-17 83.4 9.6 74 6-84 35-108 (109)
21 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 1.9E-12 4.1E-17 84.3 7.5 70 6-80 33-104 (104)
22 TIGR02187 GlrX_arch Glutaredox 99.4 3E-12 6.5E-17 94.9 9.1 74 7-84 37-111 (215)
23 cd02996 PDI_a_ERp44 PDIa famil 99.4 4.8E-12 1E-16 83.5 9.0 76 5-80 31-108 (108)
24 cd02989 Phd_like_TxnDC9 Phosdu 99.4 4.9E-12 1.1E-16 86.2 8.5 61 6-72 36-96 (113)
25 cd02994 PDI_a_TMX PDIa family, 99.4 6.4E-12 1.4E-16 81.4 8.5 71 6-81 30-100 (101)
26 cd02984 TRX_PICOT TRX domain, 99.3 9.9E-12 2.1E-16 79.4 8.9 69 6-80 28-96 (97)
27 KOG0907 Thioredoxin [Posttrans 99.3 3.1E-12 6.6E-17 88.1 6.7 68 9-83 38-105 (106)
28 cd02950 TxlA TRX-like protein 99.3 1.9E-11 4.2E-16 86.3 10.5 82 6-93 34-118 (142)
29 cd02999 PDI_a_ERp44_like PDIa 99.3 7.2E-12 1.6E-16 83.4 7.6 68 6-80 32-100 (100)
30 cd03005 PDI_a_ERp46 PDIa famil 99.3 1.2E-11 2.7E-16 79.2 8.2 73 6-80 30-102 (102)
31 TIGR00411 redox_disulf_1 small 99.3 2E-11 4.4E-16 75.8 8.8 69 6-83 13-81 (82)
32 cd02962 TMX2 TMX2 family; comp 99.3 1.3E-11 2.7E-16 89.6 8.3 71 6-80 61-148 (152)
33 cd02957 Phd_like Phosducin (Ph 99.3 9.9E-12 2.1E-16 83.5 6.6 60 6-72 38-97 (113)
34 cd02986 DLP Dim1 family, Dim1- 99.3 3.8E-11 8.2E-16 84.8 9.1 58 30-87 47-114 (114)
35 cd02947 TRX_family TRX family; 99.3 6.3E-11 1.4E-15 71.9 9.0 70 6-81 24-93 (93)
36 TIGR01126 pdi_dom protein disu 99.3 6E-11 1.3E-15 75.3 8.6 75 6-83 27-101 (102)
37 cd02953 DsbDgamma DsbD gamma f 99.2 3.1E-11 6.8E-16 78.9 6.8 53 29-81 46-104 (104)
38 PTZ00051 thioredoxin; Provisio 99.2 6.4E-11 1.4E-15 76.0 7.9 66 6-78 32-97 (98)
39 cd02997 PDI_a_PDIR PDIa family 99.2 9.7E-11 2.1E-15 75.0 8.1 72 6-80 31-104 (104)
40 PTZ00443 Thioredoxin domain-co 99.2 1.1E-10 2.3E-15 89.5 9.6 77 6-87 66-142 (224)
41 cd02982 PDI_b'_family Protein 99.2 5.8E-11 1.3E-15 76.5 6.9 74 6-84 26-103 (103)
42 TIGR01295 PedC_BrcD bacterioci 99.2 2.2E-10 4.7E-15 79.5 9.3 69 6-81 37-121 (122)
43 cd02987 Phd_like_Phd Phosducin 99.2 7E-11 1.5E-15 86.6 7.0 54 28-82 113-173 (175)
44 cd03000 PDI_a_TMX3 PDIa family 99.2 3.2E-10 6.9E-15 74.5 8.6 74 6-82 29-102 (104)
45 cd02961 PDI_a_family Protein D 99.2 1.4E-10 3E-15 72.0 6.5 72 6-80 29-101 (101)
46 cd02951 SoxW SoxW family; SoxW 99.1 6.1E-10 1.3E-14 75.1 9.4 57 30-86 50-121 (125)
47 cd03001 PDI_a_P5 PDIa family, 99.1 1.3E-09 2.8E-14 69.9 8.1 70 6-80 32-102 (103)
48 cd03002 PDI_a_MPD1_like PDI fa 99.0 1E-09 2.2E-14 71.4 6.6 71 6-81 32-109 (109)
49 TIGR02187 GlrX_arch Glutaredox 99.0 2.4E-09 5.3E-14 79.3 8.8 52 28-82 163-214 (215)
50 cd02995 PDI_a_PDI_a'_C PDIa fa 99.0 2E-09 4.3E-14 68.7 7.2 71 6-80 32-104 (104)
51 PTZ00102 disulphide isomerase; 99.0 4.2E-09 9.1E-14 83.9 9.9 77 6-85 63-139 (477)
52 cd02998 PDI_a_ERp38 PDIa famil 99.0 2.7E-09 5.9E-14 68.0 7.2 73 5-80 31-105 (105)
53 TIGR01130 ER_PDI_fam protein d 99.0 4.2E-09 9.1E-14 82.5 9.7 78 6-85 32-110 (462)
54 cd03026 AhpF_NTD_C TRX-GRX-lik 99.0 3.2E-09 6.8E-14 70.4 7.6 63 6-78 26-88 (89)
55 cd02988 Phd_like_VIAF Phosduci 98.9 7.8E-09 1.7E-13 77.2 8.7 67 7-82 117-190 (192)
56 PHA02125 thioredoxin-like prot 98.9 5.2E-09 1.1E-13 66.3 6.2 48 30-80 25-73 (75)
57 cd03007 PDI_a_ERp29_N PDIa fam 98.9 5.3E-09 1.2E-13 73.6 6.1 54 29-82 51-114 (116)
58 PF13098 Thioredoxin_2: Thiore 98.8 1.1E-08 2.3E-13 67.0 5.7 72 7-80 20-112 (112)
59 TIGR00412 redox_disulf_2 small 98.8 2.1E-08 4.5E-13 64.0 6.6 62 7-80 13-75 (76)
60 PTZ00102 disulphide isomerase; 98.8 4.2E-08 9.1E-13 78.2 8.9 85 6-93 389-474 (477)
61 KOG0190 Protein disulfide isom 98.7 2.4E-08 5.2E-13 84.7 7.2 77 7-85 57-133 (493)
62 PTZ00062 glutaredoxin; Provisi 98.7 8.9E-08 1.9E-12 72.7 8.5 50 27-85 46-95 (204)
63 cd02973 TRX_GRX_like Thioredox 98.7 9.1E-08 2E-12 58.1 6.6 51 7-65 14-64 (67)
64 cd02993 PDI_a_APS_reductase PD 98.7 1.1E-07 2.5E-12 63.2 7.1 71 6-80 35-109 (109)
65 KOG0908 Thioredoxin-like prote 98.6 5.9E-08 1.3E-12 77.6 6.3 61 27-88 50-110 (288)
66 TIGR00385 dsbE periplasmic pro 98.5 5.9E-07 1.3E-11 64.4 7.2 50 35-84 121-171 (173)
67 cd02952 TRP14_like Human TRX-r 98.5 2.5E-07 5.4E-12 65.0 5.0 52 6-62 42-101 (119)
68 cd02958 UAS UAS family; UAS is 98.5 1.4E-06 3E-11 58.4 8.2 56 30-85 53-112 (114)
69 PRK00293 dipZ thiol:disulfide 98.5 3.8E-07 8.2E-12 77.4 6.5 55 29-83 508-569 (571)
70 cd02992 PDI_a_QSOX PDIa family 98.4 7.4E-07 1.6E-11 60.5 6.2 61 6-69 33-95 (114)
71 TIGR00424 APS_reduc 5'-adenyly 98.4 1.3E-06 2.9E-11 73.4 8.4 74 6-83 385-462 (463)
72 PRK14018 trifunctional thiored 98.4 7.4E-07 1.6E-11 75.9 6.5 49 33-81 121-170 (521)
73 PRK03147 thiol-disulfide oxido 98.4 6.4E-06 1.4E-10 57.3 9.6 74 6-83 75-171 (173)
74 PLN02309 5'-adenylylsulfate re 98.3 2.6E-06 5.7E-11 71.5 8.3 74 6-83 379-456 (457)
75 PRK15412 thiol:disulfide inter 98.3 7.4E-06 1.6E-10 59.5 9.6 44 43-86 134-178 (185)
76 cd03010 TlpA_like_DsbE TlpA-li 98.3 1.4E-06 3E-11 58.4 5.3 42 35-76 84-126 (127)
77 TIGR02196 GlrX_YruB Glutaredox 98.3 6.7E-06 1.5E-10 48.9 7.0 46 29-80 24-73 (74)
78 cd02966 TlpA_like_family TlpA- 98.2 7.6E-06 1.7E-10 51.0 6.7 60 6-69 33-116 (116)
79 PRK10877 protein disulfide iso 98.2 3.3E-06 7.2E-11 64.4 5.4 53 27-83 178-230 (232)
80 PF13192 Thioredoxin_3: Thiore 98.2 1.7E-05 3.7E-10 50.4 7.6 47 30-81 29-76 (76)
81 TIGR02740 TraF-like TraF-like 98.1 2.9E-05 6.2E-10 60.7 10.1 56 30-85 197-265 (271)
82 KOG1672 ATP binding protein [P 98.1 2.1E-06 4.5E-11 66.5 3.5 62 14-81 106-175 (211)
83 TIGR01130 ER_PDI_fam protein d 98.1 9.5E-06 2E-10 63.7 7.2 78 5-86 377-456 (462)
84 cd03020 DsbA_DsbC_DsbG DsbA fa 98.1 1.6E-06 3.6E-11 63.1 2.3 48 29-80 150-197 (197)
85 cd03011 TlpA_like_ScsD_MtbDsbE 98.1 6.6E-06 1.4E-10 54.3 5.0 43 37-79 79-121 (123)
86 PF02114 Phosducin: Phosducin; 98.1 4.1E-06 9E-11 65.7 4.6 55 27-82 175-236 (265)
87 TIGR02738 TrbB type-F conjugat 98.1 4.4E-05 9.5E-10 55.3 9.1 71 7-84 65-153 (153)
88 cd02955 SSP411 TRX domain, SSP 98.1 1E-05 2.2E-10 56.9 5.4 53 30-82 51-117 (124)
89 cd02959 ERp19 Endoplasmic reti 98.0 6.6E-06 1.4E-10 56.5 4.2 74 6-84 33-113 (117)
90 cd03009 TryX_like_TryX_NRX Try 98.0 2.6E-05 5.6E-10 52.6 6.7 60 6-67 32-116 (131)
91 TIGR03143 AhpF_homolog putativ 98.0 3.4E-05 7.4E-10 64.6 8.7 62 13-80 493-554 (555)
92 PLN02919 haloacid dehalogenase 98.0 3.5E-05 7.6E-10 69.8 8.9 48 38-85 489-537 (1057)
93 COG2143 Thioredoxin-related pr 97.9 1.5E-05 3.3E-10 60.4 5.0 42 40-81 104-146 (182)
94 cd02964 TryX_like_family Trypa 97.9 6.5E-05 1.4E-09 51.2 7.4 63 5-69 30-118 (132)
95 PF07449 HyaE: Hydrogenase-1 e 97.9 2.4E-05 5.2E-10 54.7 4.4 64 4-75 43-106 (107)
96 TIGR02200 GlrX_actino Glutared 97.7 9.2E-05 2E-09 45.0 4.4 46 30-80 25-75 (77)
97 smart00594 UAS UAS domain. 97.7 8.7E-05 1.9E-09 50.8 4.7 51 30-80 63-121 (122)
98 cd02991 UAS_ETEA UAS family, E 97.7 0.0002 4.4E-09 49.6 6.6 55 30-84 53-113 (116)
99 cd02983 P5_C P5 family, C-term 97.6 0.0008 1.7E-08 47.3 9.5 83 8-94 40-125 (130)
100 KOG0191 Thioredoxin/protein di 97.6 0.00025 5.4E-09 56.7 7.4 76 6-86 61-136 (383)
101 cd01659 TRX_superfamily Thiore 97.6 0.00044 9.5E-09 37.4 6.0 50 6-61 11-63 (69)
102 cd02969 PRX_like1 Peroxiredoxi 97.6 0.0014 3E-08 46.3 10.1 54 40-93 98-161 (171)
103 KOG0191 Thioredoxin/protein di 97.6 0.00027 5.7E-09 56.6 6.8 85 9-96 179-264 (383)
104 KOG0912 Thiol-disulfide isomer 97.6 0.00028 6.1E-09 58.3 7.1 75 10-84 31-106 (375)
105 KOG4277 Uncharacterized conser 97.5 0.00015 3.3E-09 60.4 5.1 53 27-80 76-128 (468)
106 PRK15317 alkyl hydroperoxide r 97.5 0.00077 1.7E-08 55.8 8.6 63 14-82 134-196 (517)
107 PRK13728 conjugal transfer pro 97.4 0.002 4.2E-08 48.6 9.8 55 30-84 100-171 (181)
108 PF01216 Calsequestrin: Calseq 97.4 0.0011 2.5E-08 55.2 9.0 76 5-85 69-145 (383)
109 COG0526 TrxA Thiol-disulfide i 97.4 0.00074 1.6E-08 40.6 6.0 56 29-84 64-124 (127)
110 PF13848 Thioredoxin_6: Thiore 97.4 0.0022 4.7E-08 44.5 9.1 69 9-82 112-184 (184)
111 PF08534 Redoxin: Redoxin; In 97.4 0.00034 7.3E-09 47.6 4.4 43 38-80 92-146 (146)
112 TIGR01626 ytfJ_HI0045 conserve 97.3 0.00054 1.2E-08 51.5 5.7 46 35-80 129-176 (184)
113 KOG0914 Thioredoxin-like prote 97.3 0.00016 3.6E-09 57.4 2.6 45 24-69 173-223 (265)
114 PF05768 DUF836: Glutaredoxin- 97.3 0.0021 4.6E-08 41.3 7.4 55 26-81 25-81 (81)
115 cd03012 TlpA_like_DipZ_like Tl 97.3 0.0013 2.9E-08 44.2 6.6 34 37-70 91-125 (126)
116 PF13848 Thioredoxin_6: Thiore 97.3 0.0038 8.2E-08 43.3 8.8 71 6-85 4-76 (184)
117 cd03017 PRX_BCP Peroxiredoxin 97.2 0.0036 7.7E-08 41.9 8.2 45 37-81 86-140 (140)
118 cd02976 NrdH NrdH-redoxin (Nrd 97.2 0.0025 5.4E-08 37.6 6.6 44 30-79 25-72 (73)
119 PF13905 Thioredoxin_8: Thiore 97.1 0.0045 9.7E-08 39.2 7.7 24 40-63 71-95 (95)
120 KOG3414 Component of the U4/U6 97.1 0.0057 1.2E-07 45.1 9.1 78 7-89 38-125 (142)
121 PF01323 DSBA: DSBA-like thior 97.1 0.00051 1.1E-08 48.3 3.4 42 36-81 152-193 (193)
122 TIGR03140 AhpF alkyl hydropero 97.1 0.0037 7.9E-08 51.9 8.7 52 28-83 147-198 (515)
123 PRK09437 bcp thioredoxin-depen 97.0 0.013 2.9E-07 40.4 9.4 45 38-82 94-151 (154)
124 cd03008 TryX_like_RdCVF Trypar 96.9 0.0068 1.5E-07 43.8 8.0 25 42-66 103-128 (146)
125 cd02978 KaiB_like KaiB-like fa 96.8 0.0015 3.2E-08 43.1 3.5 48 5-56 13-60 (72)
126 PRK11200 grxA glutaredoxin 1; 96.8 0.014 3E-07 37.2 7.9 64 7-84 14-83 (85)
127 PF11009 DUF2847: Protein of u 96.7 0.019 4E-07 40.2 8.3 65 7-76 34-104 (105)
128 cd03023 DsbA_Com1_like DsbA fa 96.7 0.0018 3.8E-08 43.3 3.0 40 37-81 115-154 (154)
129 PF13462 Thioredoxin_4: Thiore 96.7 0.002 4.4E-08 43.9 3.3 42 36-82 121-162 (162)
130 PLN02412 probable glutathione 96.6 0.0071 1.5E-07 43.4 6.1 37 49-85 128-165 (167)
131 cd03024 DsbA_FrnE DsbA family, 96.6 0.0022 4.8E-08 45.7 3.4 44 34-81 158-201 (201)
132 cd03072 PDI_b'_ERp44 PDIb' fam 96.6 0.015 3.1E-07 39.8 7.3 78 7-86 29-110 (111)
133 TIGR03143 AhpF_homolog putativ 96.6 0.017 3.7E-07 48.5 8.8 67 30-96 398-466 (555)
134 PF00462 Glutaredoxin: Glutare 96.6 0.014 3E-07 34.8 6.1 33 30-64 24-60 (60)
135 TIGR02194 GlrX_NrdH Glutaredox 96.5 0.012 2.5E-07 36.5 5.7 57 6-78 11-70 (72)
136 COG2761 FrnE Predicted dithiol 96.5 0.0041 8.9E-08 48.6 4.2 50 39-92 172-221 (225)
137 TIGR02742 TrbC_Ftype type-F co 96.4 0.014 3.1E-07 41.9 6.3 64 11-81 38-112 (130)
138 COG4232 Thiol:disulfide interc 96.3 0.0069 1.5E-07 52.8 5.3 57 27-83 506-567 (569)
139 TIGR02180 GRX_euk Glutaredoxin 96.3 0.026 5.6E-07 34.7 6.6 43 30-80 28-75 (84)
140 PF13728 TraF: F plasmid trans 96.3 0.021 4.6E-07 43.3 7.2 52 29-80 150-214 (215)
141 PRK11657 dsbG disulfide isomer 96.3 0.0041 8.8E-08 48.0 3.4 44 37-81 205-249 (251)
142 cd03015 PRX_Typ2cys Peroxiredo 96.1 0.019 4.2E-07 40.8 5.9 48 37-84 99-157 (173)
143 cd03073 PDI_b'_ERp72_ERp57 PDI 96.1 0.025 5.5E-07 38.8 6.0 73 8-84 34-111 (111)
144 cd03029 GRX_hybridPRX5 Glutare 96.1 0.053 1.2E-06 33.2 6.9 43 30-80 26-71 (72)
145 PRK13190 putative peroxiredoxi 96.0 0.028 6.1E-07 41.7 6.5 49 37-85 96-155 (202)
146 TIGR02661 MauD methylamine deh 96.0 0.019 4.2E-07 41.9 5.4 43 40-83 135-178 (189)
147 PLN02399 phospholipid hydroper 96.0 0.014 3E-07 45.3 4.8 35 50-84 199-234 (236)
148 PF13743 Thioredoxin_5: Thiore 96.0 0.0031 6.7E-08 46.1 1.1 42 37-78 133-176 (176)
149 cd03022 DsbA_HCCA_Iso DsbA fam 95.9 0.0068 1.5E-07 42.6 2.8 38 38-80 154-191 (192)
150 PF14595 Thioredoxin_9: Thiore 95.9 0.014 3.1E-07 41.1 4.3 61 6-73 55-119 (129)
151 cd02066 GRX_family Glutaredoxi 95.9 0.057 1.2E-06 31.3 6.2 46 16-67 15-64 (72)
152 PF09673 TrbC_Ftype: Type-F co 95.7 0.039 8.4E-07 38.2 5.8 64 10-79 36-111 (113)
153 PF07912 ERp29_N: ERp29, N-ter 95.7 0.03 6.5E-07 40.7 5.3 60 24-83 49-118 (126)
154 TIGR02190 GlrX-dom Glutaredoxi 95.7 0.068 1.5E-06 33.8 6.4 43 30-80 33-78 (79)
155 TIGR02654 circ_KaiB circadian 95.7 0.02 4.3E-07 39.0 4.0 62 10-73 17-78 (87)
156 cd00340 GSH_Peroxidase Glutath 95.6 0.017 3.6E-07 40.3 3.7 26 54-79 125-151 (152)
157 KOG2603 Oligosaccharyltransfer 95.6 0.024 5.2E-07 46.7 4.9 66 29-95 104-181 (331)
158 TIGR03137 AhpC peroxiredoxin. 95.5 0.26 5.6E-06 35.9 9.6 47 39-85 100-157 (187)
159 PTZ00056 glutathione peroxidas 95.4 0.15 3.2E-06 37.9 8.3 33 54-86 148-180 (199)
160 PRK09301 circadian clock prote 95.3 0.029 6.2E-07 39.4 4.0 62 10-73 20-81 (103)
161 KOG0911 Glutaredoxin-related p 95.3 0.025 5.4E-07 44.5 4.1 49 28-76 47-95 (227)
162 PF07689 KaiB: KaiB domain; I 95.2 0.0057 1.2E-07 40.9 0.2 50 3-56 7-56 (82)
163 cd02967 mauD Methylamine utili 95.1 0.03 6.4E-07 36.3 3.4 27 41-67 85-112 (114)
164 cd03019 DsbA_DsbA DsbA family, 95.1 0.027 6E-07 38.9 3.3 45 37-84 129-173 (178)
165 TIGR02739 TraF type-F conjugat 95.0 0.21 4.5E-06 39.5 8.4 58 29-86 180-250 (256)
166 PRK10638 glutaredoxin 3; Provi 94.9 0.12 2.7E-06 32.7 5.8 45 15-65 16-64 (83)
167 PRK10329 glutaredoxin-like pro 94.9 0.37 8E-06 31.1 8.1 48 30-83 26-76 (81)
168 PRK10954 periplasmic protein d 94.7 0.051 1.1E-06 40.1 4.1 44 38-83 154-203 (207)
169 cd03018 PRX_AhpE_like Peroxire 94.6 0.56 1.2E-05 31.6 8.8 41 41-81 97-148 (149)
170 TIGR02181 GRX_bact Glutaredoxi 94.6 0.15 3.3E-06 31.5 5.5 33 30-64 24-60 (79)
171 KOG3171 Conserved phosducin-li 94.4 0.047 1E-06 43.7 3.4 50 18-69 180-229 (273)
172 PF02966 DIM1: Mitosis protein 94.3 0.52 1.1E-05 34.5 8.5 60 30-90 53-123 (133)
173 TIGR02183 GRXA Glutaredoxin, G 94.3 0.58 1.3E-05 30.1 7.9 49 28-84 28-82 (86)
174 PTZ00256 glutathione peroxidas 94.2 0.099 2.1E-06 37.9 4.6 37 48-84 141-181 (183)
175 cd02981 PDI_b_family Protein D 94.2 0.23 5.1E-06 31.4 5.8 64 10-82 32-96 (97)
176 cd03027 GRX_DEP Glutaredoxin ( 94.1 0.31 6.7E-06 29.9 6.2 34 30-65 26-63 (73)
177 cd03418 GRX_GRXb_1_3_like Glut 94.1 0.33 7.2E-06 29.3 6.2 33 30-64 25-62 (75)
178 cd03419 GRX_GRXh_1_2_like Glut 94.0 0.39 8.5E-06 29.3 6.5 34 29-64 26-64 (82)
179 cd02960 AGR Anterior Gradient 93.9 0.083 1.8E-06 37.9 3.6 42 30-73 59-102 (130)
180 PRK15000 peroxidase; Provision 93.9 0.26 5.6E-06 36.7 6.4 49 37-85 104-163 (200)
181 PF00578 AhpC-TSA: AhpC/TSA fa 93.8 0.38 8.3E-06 31.2 6.4 28 39-66 90-124 (124)
182 KOG2507 Ubiquitin regulatory p 93.8 0.16 3.5E-06 43.7 5.7 58 27-84 49-111 (506)
183 PRK13189 peroxiredoxin; Provis 93.7 0.23 5E-06 37.6 6.0 48 38-85 105-164 (222)
184 cd03016 PRX_1cys Peroxiredoxin 93.6 1.5 3.2E-05 32.4 9.9 49 38-86 95-156 (203)
185 PF03190 Thioredox_DsbH: Prote 93.6 0.16 3.5E-06 37.9 4.8 43 30-73 73-124 (163)
186 KOG0190 Protein disulfide isom 93.4 0.13 2.9E-06 44.2 4.6 74 6-84 398-473 (493)
187 PRK10382 alkyl hydroperoxide r 93.3 0.35 7.7E-06 35.9 6.3 49 37-85 98-157 (187)
188 TIGR02540 gpx7 putative glutat 92.8 0.16 3.5E-06 35.2 3.7 33 51-83 115-152 (153)
189 PTZ00137 2-Cys peroxiredoxin; 92.7 2.7 5.8E-05 33.2 10.7 49 37-85 168-226 (261)
190 cd03014 PRX_Atyp2cys Peroxired 92.5 0.91 2E-05 30.6 7.0 40 41-80 93-141 (143)
191 cd03025 DsbA_FrnE_like DsbA fa 92.3 0.14 3E-06 36.0 2.8 26 37-62 155-180 (193)
192 PRK13599 putative peroxiredoxi 92.3 2.6 5.7E-05 31.8 9.9 49 37-85 97-157 (215)
193 PRK13703 conjugal pilus assemb 92.2 1.2 2.6E-05 35.1 8.2 57 30-86 174-243 (248)
194 PF13899 Thioredoxin_7: Thiore 91.7 0.53 1.1E-05 29.6 4.7 29 30-59 53-81 (82)
195 PTZ00253 tryparedoxin peroxida 91.6 2.8 6E-05 30.7 9.1 49 38-86 107-166 (199)
196 PF06110 DUF953: Eukaryotic pr 91.4 1 2.2E-05 31.9 6.3 57 5-69 39-104 (119)
197 cd02970 PRX_like2 Peroxiredoxi 91.4 0.37 8.1E-06 32.1 4.0 33 37-69 86-148 (149)
198 TIGR02189 GlrX-like_plant Glut 91.2 0.79 1.7E-05 30.5 5.4 33 30-64 33-72 (99)
199 COG1651 DsbG Protein-disulfide 90.2 0.3 6.6E-06 36.1 2.9 43 36-83 200-242 (244)
200 cd03028 GRX_PICOT_like Glutare 90.0 1.8 3.9E-05 28.0 6.2 33 30-64 38-74 (90)
201 PRK13730 conjugal transfer pil 90.0 1 2.2E-05 35.3 5.8 64 11-82 129-192 (212)
202 cd02971 PRX_family Peroxiredox 89.6 0.67 1.5E-05 30.7 4.0 35 38-72 87-131 (140)
203 COG3531 Predicted protein-disu 88.9 0.86 1.9E-05 35.7 4.6 45 40-84 163-209 (212)
204 PRK13191 putative peroxiredoxi 88.5 2.3 5.1E-05 32.0 6.7 49 37-85 102-162 (215)
205 PRK00522 tpx lipid hydroperoxi 87.9 0.93 2E-05 32.3 4.0 47 35-81 104-163 (167)
206 PF00352 TBP: Transcription fa 86.7 1.4 3.1E-05 28.6 4.1 31 52-84 49-79 (86)
207 cd02972 DsbA_family DsbA famil 86.4 0.62 1.3E-05 28.1 2.1 21 39-59 71-91 (98)
208 KOG0913 Thiol-disulfide isomer 86.0 0.98 2.1E-05 36.1 3.5 63 27-90 70-132 (248)
209 cd03066 PDI_b_Calsequestrin_mi 85.8 1.6 3.5E-05 28.6 4.1 43 39-82 55-99 (102)
210 KOG1364 Predicted ubiquitin re 84.6 1.1 2.5E-05 37.4 3.4 54 33-86 136-191 (356)
211 PF06491 Disulph_isomer: Disul 84.3 2 4.4E-05 31.6 4.2 59 26-84 64-132 (136)
212 TIGR00365 monothiol glutaredox 83.9 6.1 0.00013 26.1 6.2 34 30-65 42-79 (97)
213 COG0695 GrxC Glutaredoxin and 83.2 3.7 7.9E-05 26.4 4.8 42 16-63 16-63 (80)
214 cd02967 mauD Methylamine utili 81.8 2.7 5.9E-05 26.9 3.8 45 7-56 36-83 (114)
215 COG3634 AhpF Alkyl hydroperoxi 80.3 2 4.3E-05 37.1 3.4 64 13-82 133-196 (520)
216 KOG2501 Thioredoxin, nucleored 77.8 2.3 5E-05 31.8 2.7 37 30-66 94-131 (157)
217 cd00652 TBP_TLF TATA box bindi 77.7 4.8 0.0001 29.8 4.4 29 54-84 141-169 (174)
218 PRK00394 transcription factor; 77.6 4.9 0.00011 30.0 4.4 30 53-84 140-169 (179)
219 cd04518 TBP_archaea archaeal T 77.3 5 0.00011 29.9 4.4 30 54-85 140-169 (174)
220 PLN00062 TATA-box-binding prot 76.1 5.5 0.00012 29.9 4.4 30 53-84 139-168 (179)
221 COG3411 Ferredoxin [Energy pro 75.2 7.7 0.00017 25.2 4.3 37 53-93 18-54 (64)
222 cd04517 TLF TBP-like factors ( 75.1 6.1 0.00013 29.3 4.3 30 54-85 141-170 (174)
223 PHA03050 glutaredoxin; Provisi 74.6 13 0.00027 25.3 5.5 33 31-65 42-81 (108)
224 cd03021 DsbA_GSTK DsbA family, 74.4 2.1 4.5E-05 31.4 1.7 22 38-59 166-187 (209)
225 cd04516 TBP_eukaryotes eukaryo 74.2 6.6 0.00014 29.2 4.4 29 54-84 140-168 (174)
226 cd03069 PDI_b_ERp57 PDIb famil 74.2 6.2 0.00014 26.0 3.8 39 40-82 55-102 (104)
227 PRK00394 transcription factor; 73.7 6.6 0.00014 29.3 4.2 32 52-85 46-77 (179)
228 COG1225 Bcp Peroxiredoxin [Pos 72.8 9.6 0.00021 28.3 4.9 50 33-82 89-154 (157)
229 cd04516 TBP_eukaryotes eukaryo 72.8 7.7 0.00017 28.9 4.4 30 53-84 48-77 (174)
230 PF13778 DUF4174: Domain of un 72.7 21 0.00046 24.5 6.4 70 10-83 28-111 (118)
231 PF09061 Stirrup: Stirrup; In 72.6 1.1 2.4E-05 30.0 -0.1 51 35-85 7-64 (79)
232 cd02990 UAS_FAF1 UAS family, F 71.9 17 0.00038 26.2 5.9 40 43-82 88-131 (136)
233 cd00652 TBP_TLF TATA box bindi 70.8 9.1 0.0002 28.3 4.4 31 52-84 47-77 (174)
234 PLN00062 TATA-box-binding prot 70.7 8.8 0.00019 28.8 4.3 30 53-84 48-77 (179)
235 PRK12759 bifunctional gluaredo 70.0 16 0.00035 30.2 6.1 33 30-64 27-71 (410)
236 cd04518 TBP_archaea archaeal T 69.9 9.2 0.0002 28.5 4.3 30 53-84 48-77 (174)
237 TIGR03140 AhpF alkyl hydropero 67.9 22 0.00048 29.7 6.5 46 51-96 61-107 (515)
238 cd04517 TLF TBP-like factors ( 67.7 12 0.00026 27.8 4.5 31 52-84 47-77 (174)
239 cd02407 PTH2_family Peptidyl-t 67.6 16 0.00035 25.4 4.9 63 19-82 41-111 (115)
240 cd02968 SCO SCO (an acronym fo 64.7 31 0.00066 22.7 5.7 28 41-68 99-141 (142)
241 PRK04322 peptidyl-tRNA hydrola 63.0 11 0.00024 26.3 3.3 61 21-82 41-109 (113)
242 PF01981 PTH2: Peptidyl-tRNA h 62.8 21 0.00045 24.3 4.7 68 15-83 38-113 (116)
243 PF09695 YtfJ_HI0045: Bacteria 62.5 13 0.00027 28.1 3.7 47 36-82 108-156 (160)
244 PRK12306 uvrC excinuclease ABC 62.3 15 0.00033 31.8 4.7 40 53-92 254-295 (519)
245 COG5494 Predicted thioredoxin/ 62.2 18 0.0004 29.1 4.8 45 34-82 42-86 (265)
246 PF14430 Imm1: Immunity protei 62.1 14 0.00031 25.5 3.8 26 69-94 98-123 (127)
247 TIGR02743 TraW type-F conjugat 59.8 8 0.00017 29.7 2.3 29 35-64 169-197 (202)
248 PF02938 GAD: GAD domain; Int 59.4 8.9 0.00019 25.3 2.2 47 36-83 27-73 (95)
249 KOG1731 FAD-dependent sulfhydr 57.7 19 0.00042 32.1 4.6 59 27-85 90-158 (606)
250 cd03031 GRX_GRX_like Glutaredo 57.1 37 0.0008 24.6 5.3 44 16-65 21-72 (147)
251 PF10865 DUF2703: Domain of un 56.8 41 0.00088 23.9 5.4 63 3-71 17-79 (120)
252 cd03041 GST_N_2GST_N GST_N fam 56.5 44 0.00095 20.4 6.5 50 28-83 25-76 (77)
253 PF13417 GST_N_3: Glutathione 56.5 43 0.00092 20.3 8.1 52 27-86 21-73 (75)
254 PF09822 ABC_transp_aux: ABC-t 55.8 87 0.0019 23.7 10.2 77 8-86 42-144 (271)
255 PF02604 PhdYeFM_antitox: Anti 55.5 25 0.00055 21.4 3.8 30 53-82 25-54 (75)
256 KOG3170 Conserved phosducin-li 54.6 5.3 0.00011 31.8 0.6 51 27-80 140-197 (240)
257 PRK15317 alkyl hydroperoxide r 51.0 66 0.0014 26.8 6.5 46 51-96 60-106 (517)
258 cd02430 PTH2 Peptidyl-tRNA hyd 50.7 40 0.00086 23.5 4.5 62 20-82 42-111 (115)
259 PF05225 HTH_psq: helix-turn-h 50.6 21 0.00045 20.9 2.6 27 11-49 2-28 (45)
260 COG2101 SPT15 TATA-box binding 49.1 35 0.00076 26.4 4.3 31 53-85 54-84 (185)
261 TIGR00283 arch_pth2 peptidyl-t 47.7 34 0.00073 23.9 3.7 61 21-82 43-111 (115)
262 cd03030 GRX_SH3BGR Glutaredoxi 47.2 83 0.0018 20.9 6.1 54 7-66 12-73 (92)
263 cd03013 PRX5_like Peroxiredoxi 45.6 48 0.001 23.3 4.3 39 34-72 93-142 (155)
264 PF00708 Acylphosphatase: Acyl 45.4 45 0.00097 21.5 3.9 49 41-94 24-72 (91)
265 PF08806 Sep15_SelM: Sep15/Sel 45.1 36 0.00079 22.2 3.4 40 46-85 36-77 (78)
266 PRK10824 glutaredoxin-4; Provi 45.0 56 0.0012 22.8 4.5 35 30-66 45-83 (115)
267 PRK00558 uvrC excinuclease ABC 44.8 40 0.00087 29.5 4.5 40 54-93 265-310 (598)
268 PF00571 CBS: CBS domain CBS d 44.2 18 0.00039 20.3 1.7 37 42-81 20-56 (57)
269 PTZ00062 glutaredoxin; Provisi 44.2 70 0.0015 24.3 5.3 44 16-65 133-180 (204)
270 CHL00030 rpl23 ribosomal prote 44.2 30 0.00064 23.6 2.9 28 9-42 30-57 (93)
271 cd02970 PRX_like2 Peroxiredoxi 42.1 50 0.0011 21.7 3.8 60 8-71 40-99 (149)
272 PRK13738 conjugal transfer pil 41.8 23 0.0005 27.4 2.4 30 35-64 167-197 (209)
273 TIGR02663 nifX nitrogen fixati 40.8 31 0.00067 23.4 2.7 33 62-95 85-117 (119)
274 KOG3302 TATA-box binding prote 40.8 52 0.0011 25.7 4.1 29 54-84 161-189 (200)
275 PF08918 PhoQ_Sensor: PhoQ Sen 40.5 23 0.0005 27.2 2.1 31 34-69 60-92 (180)
276 KOG1731 FAD-dependent sulfhydr 40.0 29 0.00063 31.1 2.9 58 28-86 214-271 (606)
277 PF14332 DUF4388: Domain of un 39.8 45 0.00097 21.3 3.2 14 56-69 36-49 (103)
278 PF10262 Rdx: Rdx family; Int 38.8 71 0.0015 20.1 3.9 33 51-83 41-76 (76)
279 cd03037 GST_N_GRX2 GST_N famil 38.5 84 0.0018 18.5 5.4 42 21-64 18-59 (71)
280 PF14285 DUF4367: Domain of un 38.5 58 0.0013 22.3 3.8 28 55-82 139-167 (168)
281 TIGR01101 V_ATP_synt_F vacuola 38.0 45 0.00098 23.5 3.2 67 9-84 43-113 (115)
282 cd02971 PRX_family Peroxiredox 36.0 80 0.0017 20.6 4.0 36 6-45 37-72 (140)
283 PF09116 gp45-slide_C: gp45 sl 36.0 26 0.00056 24.8 1.7 35 34-68 5-40 (112)
284 cd04589 CBS_pair_CAP-ED_DUF294 36.0 41 0.0009 20.7 2.5 44 31-78 66-110 (111)
285 TIGR03636 L23_arch archaeal ri 35.8 47 0.001 21.8 2.8 26 8-39 24-49 (77)
286 cd03045 GST_N_Delta_Epsilon GS 35.8 93 0.002 18.2 6.5 37 27-65 23-63 (74)
287 cd03060 GST_N_Omega_like GST_N 35.3 98 0.0021 18.3 6.3 38 27-65 23-61 (71)
288 PF07411 DUF1508: Domain of un 35.3 71 0.0015 18.9 3.3 30 59-88 13-42 (49)
289 cd03062 TRX_Fd_Sucrase TRX-lik 35.2 1E+02 0.0022 20.4 4.5 35 52-90 53-89 (97)
290 PRK07883 hypothetical protein; 34.6 74 0.0016 27.5 4.5 33 54-86 468-503 (557)
291 cd03057 GST_N_Beta GST_N famil 34.5 1E+02 0.0022 18.3 6.3 50 27-83 22-75 (77)
292 PF14466 DUF4425: Domain of un 33.9 42 0.00091 24.3 2.5 14 54-67 108-121 (121)
293 PF02484 Rhabdo_NV: Rhabdoviru 33.8 54 0.0012 23.2 3.0 40 44-83 16-55 (111)
294 PRK14668 uvrC excinuclease ABC 33.5 69 0.0015 28.1 4.2 40 53-92 264-311 (577)
295 PRK14669 uvrC excinuclease ABC 33.1 83 0.0018 28.0 4.7 40 53-92 265-318 (624)
296 cd04590 CBS_pair_CorC_HlyC_ass 32.7 56 0.0012 20.0 2.7 43 32-78 66-110 (111)
297 cd03055 GST_N_Omega GST_N fami 32.1 1.3E+02 0.0029 18.8 6.0 46 17-65 33-79 (89)
298 KOG3200 Uncharacterized conser 31.7 52 0.0011 25.9 2.9 38 45-92 4-41 (224)
299 PF11525 CopK: Copper resistan 31.6 30 0.00065 23.1 1.3 11 54-64 17-27 (73)
300 cd00570 GST_N_family Glutathio 31.5 92 0.002 16.9 5.0 46 16-65 14-61 (71)
301 TIGR01262 maiA maleylacetoacet 31.3 1.9E+02 0.004 20.3 5.5 44 19-65 15-63 (210)
302 COG2101 SPT15 TATA-box binding 31.0 91 0.002 24.1 4.0 29 55-85 149-177 (185)
303 cd03036 ArsC_like Arsenate Red 30.7 31 0.00067 23.1 1.3 74 15-92 13-96 (111)
304 PRK14670 uvrC excinuclease ABC 30.6 87 0.0019 27.6 4.4 33 53-85 239-276 (574)
305 PF04551 GcpE: GcpE protein; 30.1 82 0.0018 26.5 4.0 37 47-83 319-358 (359)
306 TIGR00194 uvrC excinuclease AB 30.0 1E+02 0.0022 27.1 4.7 33 54-86 257-295 (574)
307 COG0821 gcpE 1-hydroxy-2-methy 29.6 83 0.0018 26.6 3.9 73 7-85 274-352 (361)
308 cd04631 CBS_pair_18 The CBS do 29.3 64 0.0014 20.2 2.6 45 31-78 79-124 (125)
309 cd04625 CBS_pair_12 The CBS do 29.2 86 0.0019 19.2 3.1 43 32-78 68-111 (112)
310 cd04599 CBS_pair_GGDEF_assoc2 29.0 80 0.0017 19.0 2.9 42 32-77 61-103 (105)
311 COG0278 Glutaredoxin-related p 28.7 1.5E+02 0.0033 21.0 4.6 47 16-65 35-83 (105)
312 COG0089 RplW Ribosomal protein 28.5 76 0.0016 21.9 3.0 24 9-38 32-55 (94)
313 cd02429 PTH2_like Peptidyl-tRN 28.4 69 0.0015 22.5 2.8 54 29-82 56-112 (116)
314 cd04617 CBS_pair_4 The CBS dom 28.0 40 0.00086 21.3 1.5 48 31-78 69-117 (118)
315 cd03051 GST_N_GTT2_like GST_N 27.9 1.3E+02 0.0027 17.3 6.2 37 27-64 23-63 (74)
316 KOG2263 Methionine synthase II 27.3 25 0.00053 31.7 0.5 35 11-54 15-60 (765)
317 COG3620 Predicted transcriptio 27.0 74 0.0016 24.6 2.9 30 49-82 156-185 (187)
318 KOG3425 Uncharacterized conser 26.7 1.3E+02 0.0028 22.0 4.1 58 5-69 46-111 (128)
319 cd04603 CBS_pair_KefB_assoc Th 26.7 61 0.0013 20.2 2.1 43 32-78 66-110 (111)
320 smart00116 CBS Domain in cysta 26.5 42 0.0009 16.7 1.1 27 51-80 22-48 (49)
321 TIGR03757 conj_TIGR03757 integ 25.7 53 0.0011 23.3 1.8 15 44-58 77-91 (113)
322 KOG1752 Glutaredoxin and relat 25.5 1.9E+02 0.004 19.9 4.5 46 17-65 29-79 (104)
323 cd03032 ArsC_Spx Arsenate Redu 25.3 55 0.0012 21.9 1.8 72 15-90 14-93 (115)
324 cd02980 TRX_Fd_family Thioredo 25.0 1.4E+02 0.0031 17.8 3.6 29 51-83 49-77 (77)
325 PF11399 DUF3192: Protein of u 24.9 72 0.0016 22.4 2.4 12 54-65 82-93 (102)
326 cd04584 CBS_pair_ACT_assoc Thi 24.6 97 0.0021 19.1 2.8 43 32-78 77-120 (121)
327 PRK14548 50S ribosomal protein 24.5 76 0.0016 21.2 2.3 24 8-37 31-54 (84)
328 PRK14449 acylphosphatase; Prov 24.4 1.9E+02 0.0041 18.9 4.2 48 41-93 23-70 (90)
329 COG0322 UvrC Nuclease subunit 24.3 75 0.0016 28.1 2.9 50 42-93 254-308 (581)
330 cd03052 GST_N_GDAP1 GST_N fami 24.2 1.8E+02 0.0038 17.7 6.5 43 21-66 18-64 (73)
331 PF10296 DUF2404: Putative int 23.9 97 0.0021 20.1 2.8 23 73-95 18-40 (91)
332 TIGR01878 cas_Csa5 CRISPR-asso 23.8 1.4E+02 0.003 20.8 3.6 53 7-81 23-75 (97)
333 TIGR01552 phd_fam prevent-host 23.6 96 0.0021 17.7 2.4 27 54-83 23-49 (52)
334 TIGR01764 excise DNA binding d 23.5 16 0.00035 19.8 -0.9 12 70-81 37-48 (49)
335 COG2047 Uncharacterized protei 23.5 65 0.0014 26.0 2.1 42 42-83 110-153 (258)
336 cd04582 CBS_pair_ABC_OpuCA_ass 23.5 1.1E+02 0.0024 18.5 2.8 43 33-78 62-105 (106)
337 cd03044 GST_N_EF1Bgamma GST_N 23.4 1.8E+02 0.0038 17.4 5.2 43 21-65 18-63 (75)
338 cd04606 CBS_pair_Mg_transporte 23.3 80 0.0017 19.4 2.2 44 32-79 63-108 (109)
339 PRK14672 uvrC excinuclease ABC 23.2 1.6E+02 0.0035 26.8 4.8 40 53-92 267-311 (691)
340 COG3741 HutG N-formylglutamate 22.9 77 0.0017 25.8 2.5 49 32-84 72-126 (272)
341 COG3640 CooC CO dehydrogenase 22.8 74 0.0016 25.7 2.4 25 28-52 28-52 (255)
342 PF04908 SH3BGR: SH3-binding, 22.3 2.1E+02 0.0046 19.4 4.3 64 6-73 12-86 (99)
343 cd04640 CBS_pair_27 The CBS do 22.3 1.1E+02 0.0024 19.5 2.7 36 41-78 90-125 (126)
344 PRK14667 uvrC excinuclease ABC 22.1 1.2E+02 0.0025 26.7 3.6 39 54-93 258-299 (567)
345 cd03040 GST_N_mPGES2 GST_N fam 21.7 1.9E+02 0.0041 17.1 6.3 51 27-84 24-76 (77)
346 PF07511 DUF1525: Protein of u 21.6 70 0.0015 22.6 1.8 22 43-65 75-96 (114)
347 cd02974 AhpF_NTD_N Alkyl hydro 21.5 2.6E+02 0.0056 18.6 5.6 34 51-84 60-94 (94)
348 cd03015 PRX_Typ2cys Peroxiredo 21.4 2.1E+02 0.0046 20.0 4.3 62 6-71 44-112 (173)
349 cd03038 GST_N_etherase_LigE GS 21.3 2.1E+02 0.0045 17.4 6.3 59 16-83 21-82 (84)
350 cd04629 CBS_pair_16 The CBS do 21.2 58 0.0013 20.0 1.2 43 32-78 70-113 (114)
351 TIGR00762 DegV EDD domain prot 21.2 1.5E+02 0.0033 22.7 3.8 43 38-82 10-52 (275)
352 PRK06437 hypothetical protein; 21.1 1.5E+02 0.0032 18.4 3.1 24 41-65 24-47 (67)
353 COG4043 Preprotein translocase 21.0 1.6E+02 0.0034 21.1 3.5 29 54-82 38-66 (111)
354 cd03046 GST_N_GTT1_like GST_N 20.8 1.9E+02 0.0041 16.8 6.3 56 18-83 15-74 (76)
355 cd04800 CBS_pair_CAP-ED_DUF294 20.8 93 0.002 19.0 2.1 43 32-78 67-110 (111)
356 cd04635 CBS_pair_22 The CBS do 20.5 99 0.0022 19.2 2.2 45 31-78 76-121 (122)
357 PF04900 Fcf1: Fcf1; InterPro 20.5 1.1E+02 0.0025 19.9 2.6 27 38-64 71-98 (101)
358 PHA02131 hypothetical protein 20.4 24 0.00052 23.0 -0.7 21 47-67 24-44 (70)
359 KOG1349 Gpi-anchor transamidas 20.3 1.8E+02 0.0039 24.1 4.1 43 6-49 159-201 (309)
360 PF05678 VQ: VQ motif; InterP 20.2 63 0.0014 18.0 1.1 21 27-47 2-22 (31)
361 cd04638 CBS_pair_25 The CBS do 20.2 1.1E+02 0.0025 18.5 2.4 33 42-78 73-105 (106)
362 PF02645 DegV: Uncharacterised 20.0 1.5E+02 0.0032 22.8 3.5 43 38-82 11-53 (280)
363 cd04627 CBS_pair_14 The CBS do 20.0 1.6E+02 0.0034 18.5 3.1 44 30-77 76-121 (123)
No 1
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.75 E-value=5.9e-18 Score=121.58 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=64.3
Q ss_pred hhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 5 TKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 5 ~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
.|.+--++||.+... .. .++|+|||+|++++||.+|||++||||+|||||+.+++++|+++++++.++|+.++
T Consensus 52 ~D~avvleELa~e~~---~~----~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 52 SDNPVMIGELLREFP---DY----TWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred ccHHHHHHHHHHHhc---CC----ceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHh
Confidence 456666777766321 12 28999999999999999999999999999999999999999999999999999988
Q ss_pred hc
Q 037669 85 YK 86 (98)
Q Consensus 85 ~~ 86 (98)
-.
T Consensus 125 ~~ 126 (132)
T PRK11509 125 EP 126 (132)
T ss_pred cC
Confidence 54
No 2
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.73 E-value=2.5e-17 Score=115.53 Aligned_cols=69 Identities=14% Similarity=0.094 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 12 KELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 12 ~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
+-|+.....++... .++|+|||+|++++||++|||++||||++||||+++. ..|.++++.|.++|+.++
T Consensus 51 p~~~~~aa~~l~~~---~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 51 ELVLELAAQVLEDK---GIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred hhHHHHHHHHhhcC---CCEEEEEeCCCCHHHHHHcCCccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 33444444444221 3999999999999999999999999999999999998 999999999999999875
No 3
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.66 E-value=3.9e-16 Score=109.20 Aligned_cols=71 Identities=23% Similarity=0.225 Sum_probs=60.8
Q ss_pred cchhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHH
Q 037669 3 RATKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQ 78 (98)
Q Consensus 3 ~~~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~ 78 (98)
|--+|-...+.|+++++-+- .. +.|++||+|++++||.+|+|+||||+++||||+++++..|.++++||..
T Consensus 40 ~cp~c~~i~P~leela~e~~-~~----v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 40 RFPEVLDVAVVLPELLKAFP-GR----FRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred cCcchhhhHhHHHHHHHHCC-Cc----EEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEEEEeCccCHHHHhh
Confidence 34467777777887776442 22 8899999999999999999999999999999999999999999999864
No 4
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.6e-16 Score=114.97 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=68.6
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
-|-..-+.|++..+-+ .++ ++++|||+|++++||.+|+|.++||+++||||+.+.+.+|..+++.|.++|++|.
T Consensus 75 PCk~l~P~l~~~~~~~-~g~----~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 75 PCKMLGPILEELVSEY-AGK----FKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred cHhHhhHHHHHHHHhh-cCe----EEEEEEccccccchHhhcceeeeeEEEEEECCEEeeeecccCCHHHHHHHHHHHh
Confidence 4667778888888887 576 9999999999999999999999999999999999999999999999999999986
No 5
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.63 E-value=2.6e-15 Score=105.24 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=63.2
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeeccc----------CHHHH
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFR----------TADEL 76 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~----------~keeL 76 (98)
|-+..+-|++..+-+- . .++|+|||+|++++||++|+|++|||+++||||+.+++..|.. +++++
T Consensus 29 Ck~m~P~le~la~~~~-~----~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~~~~~~~~~~~~~~~~ 103 (114)
T cd02954 29 CMQMDEVLAKIAEDVS-N----FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGTGNNNKINWVFEDKQEF 103 (114)
T ss_pred HHHHHHHHHHHHHHcc-C----ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCCCCCceEEEecCcHHHH
Confidence 4455666777666442 2 1799999999999999999999999999999999999999954 56888
Q ss_pred HHHHHHHhhcC
Q 037669 77 VQMIAHFYYKA 87 (98)
Q Consensus 77 ~~~L~~~~~~~ 87 (98)
.+.++.+|++|
T Consensus 104 ~~~~~~~~~~~ 114 (114)
T cd02954 104 IDIIETIYRGA 114 (114)
T ss_pred HHHHHHHhcCC
Confidence 89999888874
No 6
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.60 E-value=6.2e-15 Score=106.77 Aligned_cols=79 Identities=11% Similarity=0.167 Sum_probs=64.7
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEE-EEeCCE-EeEeeec--------ccCHHHH
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQIL-FLLGNR-ILYREKE--------FRTADEL 76 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi-~FKnGe-~v~r~~G--------~~~keeL 76 (98)
|-+.-+-|++..+.+. . -+.|+|||||+++++|++|+|+++||++ |||||+ +++|.+| +.++++|
T Consensus 38 Ck~m~p~l~~la~~~~-~----~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l 112 (142)
T PLN00410 38 CMQMDEVLASVAETIK-N----FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEF 112 (142)
T ss_pred HHHHHHHHHHHHHHcC-C----ceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCeEEEEEecccccccccccCCHHHH
Confidence 3333444555544432 2 2889999999999999999999887777 999999 9999999 8999999
Q ss_pred HHHHHHHhhcCCCC
Q 037669 77 VQMIAHFYYKARRP 90 (98)
Q Consensus 77 ~~~L~~~~~~~~~p 90 (98)
.+.++.+|.||++-
T Consensus 113 ~~~i~~~~~~a~~g 126 (142)
T PLN00410 113 IDIVETVYRGARKG 126 (142)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998753
No 7
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.58 E-value=3.8e-14 Score=90.07 Aligned_cols=74 Identities=23% Similarity=0.299 Sum_probs=68.1
Q ss_pred hhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 5 TKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 5 ~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
..|-...+.++++.+.+-. ++.+++||++++++|+.+|+|.++||+++|++|+.+.+..|.+++++|.++|+.|
T Consensus 30 ~~C~~~~~~~~~~~~~~~~-----~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 30 PPCKAFKPILEKLAKEYKD-----NVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTT-----TSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred Cccccccceeccccccccc-----ccccchhhhhccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHHHHcC
Confidence 4577788899999887663 5999999999999999999999999999999999999999999999999999875
No 8
>PHA02278 thioredoxin-like protein
Probab=99.56 E-value=2.9e-14 Score=96.95 Aligned_cols=68 Identities=6% Similarity=0.017 Sum_probs=55.3
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCC----HhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHH
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIE----RDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQM 79 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDen----peLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~ 79 (98)
|-...+-++++.+.+- + .++|++||||++ ++|+.+|+|+++||+++||||++++|..|..++++|.++
T Consensus 29 Ck~m~p~l~~l~~~~~-~----~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 29 CEILKSVIPMFQESGD-I----KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred HHhHHHHHHHHHhhhc-C----CceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEEEEeCCCCHHHHHhh
Confidence 3444555666544321 2 268999999997 799999999999999999999999999999999998765
No 9
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.51 E-value=1.6e-13 Score=88.02 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=63.4
Q ss_pred hhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHH
Q 037669 5 TKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 5 ~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~ 81 (98)
..|-+..+.++++...+= . .+.+++||+|++++|+++|+|+++||+++|++|+.+.+..|.+++++|.++|+
T Consensus 25 ~~C~~~~~~~~~~~~~~~-~----~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 25 PPSKELLPLLERLAEEYQ-G----QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred hHHHHHHHHHHHHHHHhC-C----cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeeeecCCCCHHHHHHHhC
Confidence 457778888888776542 2 38999999999999999999999999999999999999999999999998874
No 10
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.50 E-value=2.3e-13 Score=91.57 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=64.6
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
.|-+..+.++++.+.+=. ..+.+++||+|++++++.+|||+++||+++|++|+.+.+..|..+.++|.++|+++
T Consensus 38 ~C~~~~p~~~~l~~~~~~----~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 38 SCIHIEPVWKEVIQELEP----LGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred hHHHhhHHHHHHHHHHHh----cCceEEEEeccccHHHHHHcCCccCCEEEEEECCEEEEEecCCCCHHHHHHHHhcC
Confidence 466677788887776532 24999999999999999999999999999999999999999999999999998753
No 11
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.7e-13 Score=110.02 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=74.0
Q ss_pred ccchhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHH
Q 037669 2 SRATKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 2 ~~~~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~ 81 (98)
.|+..|-++.+-|+|....+= ++ ++++|||+|++|++|.+|||+||||++.|++|+.|.-..|..|+++|.++|+
T Consensus 53 p~~~~c~qL~p~Lekla~~~~-G~----f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld 127 (304)
T COG3118 53 PWCGPCKQLTPTLEKLAAEYK-GK----FKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLD 127 (304)
T ss_pred CCCchHHHHHHHHHHHHHHhC-Cc----eEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHH
Confidence 467889999999999988665 44 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 037669 82 HFYYK 86 (98)
Q Consensus 82 ~~~~~ 86 (98)
++.-.
T Consensus 128 ~~~~~ 132 (304)
T COG3118 128 KVLPA 132 (304)
T ss_pred HhcCh
Confidence 98754
No 12
>PRK10996 thioredoxin 2; Provisional
Probab=99.46 E-value=6.8e-13 Score=93.07 Aligned_cols=73 Identities=12% Similarity=0.142 Sum_probs=61.7
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
|-+..+.++++...+ ...+.+++||+|++++++.+|+|.++||+++|+||+++.+..|.+++++|.++|+.++
T Consensus 67 C~~~~~~l~~l~~~~-----~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 67 CRNFAPIFEDVAAER-----SGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred HHHHHHHHHHHHHHh-----CCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 444455666655432 2349999999999999999999999999999999999999999999999999998764
No 13
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.46 E-value=6.1e-13 Score=86.72 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=59.8
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~ 81 (98)
.|-...+.|++..+.+ .+ .+.+++||+|++++++.+|+|+++||+++|+||+++.+..|+.++++|.++|+
T Consensus 27 ~C~~~~~~l~~l~~~~-~~----~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 27 PCRTLKPILNKVIDEF-DG----AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKSEYREFIE 97 (97)
T ss_pred hHHHHHHHHHHHHHHh-CC----ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHHHHHHhhC
Confidence 3555666666655442 12 38999999999999999999999999999999999999999999999998873
No 14
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.42 E-value=1.6e-12 Score=88.38 Aligned_cols=74 Identities=16% Similarity=0.089 Sum_probs=60.9
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeE--eeecccCHHHHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILY--REKEFRTADELVQMIAHF 83 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~--r~~G~~~keeL~~~L~~~ 83 (98)
.|-+..+-|++..+.+ +.+++++||+|++++++.+|+|+++||+++|++|.... +..|+.+++++.++|+.+
T Consensus 36 ~C~~~~~~l~~la~~~------~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i 109 (113)
T cd02975 36 YCEVTKQLLEELSELS------DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDI 109 (113)
T ss_pred ChHHHHHHHHHHHHhc------CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHHH
Confidence 3444555555554332 34899999999999999999999999999999987766 889999999999999988
Q ss_pred hh
Q 037669 84 YY 85 (98)
Q Consensus 84 ~~ 85 (98)
+.
T Consensus 110 ~~ 111 (113)
T cd02975 110 VR 111 (113)
T ss_pred Hh
Confidence 74
No 15
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.41 E-value=2.8e-12 Score=80.94 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=64.6
Q ss_pred hhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 5 TKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 5 ~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
..|-+.++++++..+.+ .. .+.|++||+|++++++.+|+|.++||+++|++|+.+.+..|..+.++|.++|+..
T Consensus 27 ~~C~~~~~~l~~~~~~~-~~----~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 27 GPCKMIAPILEELAKEY-EG----KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred HHHHHhCHHHHHHHHHh-cC----CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEeeeecCCCCHHHHHHHHHhh
Confidence 45677778888777543 22 3999999999999999999999999999999999999999999999999999764
No 16
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.40 E-value=1e-12 Score=85.57 Aligned_cols=70 Identities=11% Similarity=0.044 Sum_probs=62.0
Q ss_pred hhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHH
Q 037669 5 TKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQM 79 (98)
Q Consensus 5 ~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~ 79 (98)
..|-+..++++++...+= + .++|++||+|++++++++|+|.++||+++|++|+.+.+..|.++.++|.++
T Consensus 31 ~~C~~~~p~~~~~a~~~~-~----~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 31 SHCHDLAPTWREFAKEMD-G----VIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred hHHHHhHHHHHHHHHHhc-C----ceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCCCcccCCCCCCHHHHHhh
Confidence 346778889999887652 2 289999999999999999999999999999999999999999999998764
No 17
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.40 E-value=2.6e-12 Score=84.93 Aligned_cols=72 Identities=13% Similarity=0.023 Sum_probs=58.9
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
.|-+..+.+++.... ++ ...++|++||+| +++++++|+|+++||+++|+||+.+.+..|. +.++|.++|+.+
T Consensus 31 ~Ck~~~p~l~~~~~~---~~-~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 31 PCKAVVSLFKKIKNE---LG-DDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred hHHHHhHHHHHHHHH---cC-CCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEEEEEEecC-ChHHHHHHHhhC
Confidence 345556667665443 22 234899999999 8999999999999999999999999999996 889999988753
No 18
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.40 E-value=3.9e-12 Score=84.41 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=55.6
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCH---hHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIER---DLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenp---eLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~ 81 (98)
.|-+..+.|++..+.+ +.+.|++||+|+++ ++|++|+|+++||++||+||+++++..|..+ ++|.+.+.
T Consensus 29 ~C~~~~p~l~~la~~~------~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~~-~~l~~~~~ 100 (103)
T cd02985 29 PSVKIYPTMVKLSRTC------NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKIHEEEGIGP-DELIGDVL 100 (103)
T ss_pred hHHHHhHHHHHHHHHC------CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEEEEEeCCCH-HHHHHHHH
Confidence 3455566777766544 34899999999985 8999999999999999999999999999765 56665554
No 19
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.39 E-value=1.6e-12 Score=89.80 Aligned_cols=70 Identities=14% Similarity=-0.011 Sum_probs=62.3
Q ss_pred hhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHH-HHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHH
Q 037669 5 TKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLA-YALKVKECPQILFLLGNRILYREKEFRTADELVQM 79 (98)
Q Consensus 5 ~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA-~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~ 79 (98)
..|-+..++++++.+.+. . .+.|++||+|++++++ .+|+|+++||+++|+||+...+..|.++++.|..+
T Consensus 42 ~~Ck~l~p~~~~la~~~~-~----~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 42 AQSQAARQEFEQVAQKLS-D----QVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred HHHHHHHHHHHHHHHHhc-C----CeEEEEEECCCChHHHHHhcCCcccCEEEEEECCccceEEeCCCCHHHHHhh
Confidence 356677889999988874 2 2999999999999999 58999999999999999999999999999999875
No 20
>PRK09381 trxA thioredoxin; Provisional
Probab=99.39 E-value=4.5e-12 Score=83.36 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=64.3
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
.|-...+.++++.+.+ . ..+.+++||+|.+++++++|+|+++||+++|++|+++++..|..+.++|..+|+.++
T Consensus 35 ~C~~~~p~~~~l~~~~---~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 35 PCKMIAPILDEIADEY---Q--GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred HHHHHhHHHHHHHHHh---C--CCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 4666677777777643 1 238999999999999999999999999999999999999999999999999998764
No 21
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.39 E-value=1.9e-12 Score=84.30 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=60.5
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCC-EEeEeeecccC-HHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGN-RILYREKEFRT-ADELVQMI 80 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnG-e~v~r~~G~~~-keeL~~~L 80 (98)
.|-+..+.++++.+.+ ...+++++||+|++++++++|+|+++||+++|++| +.+.+..|..+ .++|.++|
T Consensus 33 ~C~~~~p~~~~~~~~~-----~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 33 PCQALLPELRKAARAL-----KGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred HHHHHHHHHHHHHHHh-----cCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 4556677888887765 12399999999999999999999999999999999 99999999998 99888764
No 22
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.38 E-value=3e-12 Score=94.87 Aligned_cols=74 Identities=18% Similarity=0.136 Sum_probs=61.0
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeE-eeecccCHHHHHHHHHHHh
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILY-REKEFRTADELVQMIAHFY 84 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~-r~~G~~~keeL~~~L~~~~ 84 (98)
|-+..+-|+.....+ +...+.++++|.|++++++++|+|+++||+++|+||+.+. |..|+.++++|.++|+.++
T Consensus 37 C~~~~p~l~~la~~~----~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 37 CKETEQLLEELSEVS----PKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred hHHHHHHHHHHHhhC----CCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHHH
Confidence 445555565555544 2334678888888999999999999999999999999984 9999999999999999885
No 23
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.37 E-value=4.8e-12 Score=83.49 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=61.1
Q ss_pred hhhHHhHHHHHHHHHHHHhh-cCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEE-eEeeecccCHHHHHHHH
Q 037669 5 TKNWKTLKELEKAIQVYWSA-KDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRI-LYREKEFRTADELVQMI 80 (98)
Q Consensus 5 ~~~~~~~~el~k~~~~~~~~-~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~-v~r~~G~~~keeL~~~L 80 (98)
..|-+..+.++++...+-.. .+...+.+++||+|++++|+++|||.++||+++|++|+. ..+..|.++.++|.++|
T Consensus 31 ~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 31 RFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred HHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 45666777787777654321 122359999999999999999999999999999999994 58888999999998764
No 24
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.36 E-value=4.9e-12 Score=86.18 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=50.2
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccC
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRT 72 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~ 72 (98)
.|-...+-|++..+-+ +.++|++||+|++++++++|+|+++||+++|+||++++|..|+.+
T Consensus 36 ~C~~~~p~l~~la~~~------~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~~~~g~~~ 96 (113)
T cd02989 36 RCKIMDKHLEILAKKH------LETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVDRIVGFEE 96 (113)
T ss_pred cHHHHHHHHHHHHHHc------CCCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEEEEECccc
Confidence 3445555565555432 348999999999999999999999999999999999999999754
No 25
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.36 E-value=6.4e-12 Score=81.44 Aligned_cols=71 Identities=20% Similarity=0.157 Sum_probs=60.8
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~ 81 (98)
.|-+..+.++++.+.+- ...+.+++||+|++++++.+|+|.++||+++|++|+. .+..|.++.++|.++|+
T Consensus 30 ~C~~~~p~~~~l~~~~~----~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 30 ACQQLQPEWEEFADWSD----DLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred HHHHHhHHHHHHHHhhc----cCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCCE-EEecCCCCHHHHHHHHh
Confidence 45667778888776432 2349999999999999999999999999999999985 89999999999999875
No 26
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.35 E-value=9.9e-12 Score=79.41 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=57.9
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L 80 (98)
.|-+..+.|++...-+ .+.+++++||++++++++.+|+|.++||+++|++|+++.+..|. ..++|.+.|
T Consensus 28 ~C~~~~~~l~~l~~~~-----~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 28 PCKQMNQVFEELAKEA-----FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred HHHHHhHHHHHHHHHh-----CCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEEEEeCC-CHHHHHHhh
Confidence 3556667777766655 24699999999999999999999999999999999999999997 467777665
No 27
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.1e-12 Score=88.14 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=56.7
Q ss_pred HhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 9 KTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 9 ~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
...+-++|.+.- -+++.|+|||||+++++|++|+|+++||++|||||+.+.+.+|.-.. +|++.|+.+
T Consensus 38 ~i~P~~~~La~~------y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~-~l~~~i~~~ 105 (106)
T KOG0907|consen 38 AIAPKFEKLAEK------YPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA-ELEKKIAKH 105 (106)
T ss_pred hhhhHHHHHHHH------CCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH-HHHHHHHhc
Confidence 334445554432 34599999999999999999999999999999999999999999777 888888764
No 28
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.33 E-value=1.9e-11 Score=86.28 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=67.1
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCC--HhHHHHcCCCCCCeEEEE-eCCEEeEeeecccCHHHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIE--RDLAYALKVKECPQILFL-LGNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDen--peLA~~y~V~SIPTLi~F-KnGe~v~r~~G~~~keeL~~~L~~ 82 (98)
.|-+..+.+++..+.+ ++ .++|+.||+|.+ ++++.+|+|.++||++|| ++|+++.+..|+.+.++|.++|+.
T Consensus 34 ~C~~~~p~l~~l~~~~---~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~ 108 (142)
T cd02950 34 VCQEMAPDVAKLKQKY---GD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDA 108 (142)
T ss_pred HHHHhHHHHHHHHHHh---cc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHH
Confidence 4566677777765543 22 378999999875 589999999999999999 599999999999999999999999
Q ss_pred HhhcCCCCCCC
Q 037669 83 FYYKARRPSWI 93 (98)
Q Consensus 83 ~~~~~~~p~~~ 93 (98)
++-+. +||..
T Consensus 109 l~~~~-~~~~~ 118 (142)
T cd02950 109 LVAGE-PLPYA 118 (142)
T ss_pred HHcCC-CCCcc
Confidence 99875 55543
No 29
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.33 E-value=7.2e-12 Score=83.44 Aligned_cols=68 Identities=19% Similarity=0.147 Sum_probs=60.1
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCC-CCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDIN-IERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVD-enpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L 80 (98)
.|-+..++++++.+.+- .+.+++||.| ++++++.+|+|+++||+++|++| .+.+..|.+++++|.+++
T Consensus 32 ~C~~~~p~l~~la~~~~------~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 32 FSASFRPHFNALSSMFP------QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred HHHhHhHHHHHHHHHhc------cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCHHHHHhhC
Confidence 46677889998887652 2889999999 89999999999999999999999 899999999999998764
No 30
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.32 E-value=1.2e-11 Score=79.16 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=60.7
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L 80 (98)
.|-+..+.++++...+= . ..+.+.+++||.|++++++++|+|.++||+++|++|+.+.+..|.++.++|.++|
T Consensus 30 ~C~~~~p~~~~~~~~~~-~-~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 30 HCKRLAPTWEQLAKKFN-N-ENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred HHHHhCHHHHHHHHHHh-c-cCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 34555666776665542 2 1356999999999999999999999999999999999999999999999988764
No 31
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.32 E-value=2e-11 Score=75.83 Aligned_cols=69 Identities=14% Similarity=0.089 Sum_probs=58.5
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
.|-.+.+.|+++.+.+- . .+.+++||++++++++++|||+++||+++ ||+. +..|..++++|.+.|+..
T Consensus 13 ~C~~~~~~l~~l~~~~~-~----~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 13 YCPAAKRVVEEVAKEMG-D----AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEAIKKR 81 (82)
T ss_pred chHHHHHHHHHHHHHhc-C----ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHHHHhh
Confidence 46677888888776553 2 28999999999999999999999999986 8873 899999999999998764
No 32
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.30 E-value=1.3e-11 Score=89.59 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=58.3
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCC------CCeEEEEeCCEEeEeeec----------
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKE------CPQILFLLGNRILYREKE---------- 69 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~S------IPTLi~FKnGe~v~r~~G---------- 69 (98)
.|-+..+.++++...+- ...++|++||+|++++++++|+|.+ +||+++|+||++++|..|
T Consensus 61 ~Ck~l~p~l~~la~~~~----~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~~G~~~~~~~~~~ 136 (152)
T cd02962 61 ECVNFAPVFAELSLKYN----NNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVARRPYYNDSKGRAVP 136 (152)
T ss_pred HHHHHHHHHHHHHHHcc----cCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEEEeccccCcccccc
Confidence 45666777777776543 2349999999999999999999998 999999999999999996
Q ss_pred -ccCHHHHHHHH
Q 037669 70 -FRTADELVQMI 80 (98)
Q Consensus 70 -~~~keeL~~~L 80 (98)
..|.+++...+
T Consensus 137 ~~~~~~~~~~~~ 148 (152)
T cd02962 137 FTFSKENVIRHF 148 (152)
T ss_pred ccccHHHHHHhc
Confidence 67777766543
No 33
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.29 E-value=9.9e-12 Score=83.49 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=50.1
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccC
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRT 72 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~ 72 (98)
.|-+..+.|+++..-+ +.++|++||+|++ +||++|+|.++||+++|+||+++.+..|..+
T Consensus 38 ~C~~l~~~l~~la~~~------~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~ 97 (113)
T cd02957 38 RCKILDSHLEELAAKY------PETKFVKINAEKA-FLVNYLDIKVLPTLLVYKNGELIDNIVGFEE 97 (113)
T ss_pred cHHHHHHHHHHHHHHC------CCcEEEEEEchhh-HHHHhcCCCcCCEEEEEECCEEEEEEecHHH
Confidence 3555666676666532 3489999999999 9999999999999999999999999999653
No 34
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.27 E-value=3.8e-11 Score=84.77 Aligned_cols=58 Identities=14% Similarity=0.277 Sum_probs=52.0
Q ss_pred CeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEe---------eec-ccCHHHHHHHHHHHhhcC
Q 037669 30 PRAVKIDINIERDLAYALKVKECPQILFLLGNRILYR---------EKE-FRTADELVQMIAHFYYKA 87 (98)
Q Consensus 30 vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r---------~~G-~~~keeL~~~L~~~~~~~ 87 (98)
+.|+|||||+.+++|++|+|+++||++|||||+-+-= ..| +-+|+++.+.++..|.||
T Consensus 47 ~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~yr~a 114 (114)
T cd02986 47 ASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGA 114 (114)
T ss_pred eEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHHHcCC
Confidence 8999999999999999999999999999999998753 444 456799999999999985
No 35
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.27 E-value=6.3e-11 Score=71.92 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=59.8
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~ 81 (98)
.|-+..+.|+++... .+.+.++++|++++++++.+|+|.++||+++|++|+.+++..|..+.++|.++|+
T Consensus 24 ~C~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 24 PCKAIAPVLEELAEE------YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFLE 93 (93)
T ss_pred hHHHhhHHHHHHHHH------CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEecCCCHHHHHHHhC
Confidence 355556666665554 3459999999999999999999999999999999999999999999999998873
No 36
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.25 E-value=6e-11 Score=75.34 Aligned_cols=75 Identities=20% Similarity=0.183 Sum_probs=62.8
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
.|-+..+.+++....+ .+ .+.+.++++|+|++++++++|+|.++||+++|++|+.+.+..|.++.++|..+|+.+
T Consensus 27 ~c~~~~~~~~~~~~~~-~~--~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 27 HCKNLAPEYEKLAKEL-KG--DPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred HHHhhChHHHHHHHHh-cc--CCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcceeecCCCCHHHHHHHHHhc
Confidence 4445556677665554 23 236999999999999999999999999999999999899999999999999999864
No 37
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.24 E-value=3.1e-11 Score=78.92 Aligned_cols=53 Identities=25% Similarity=0.219 Sum_probs=49.7
Q ss_pred CCeEEEEeCCC----CHhHHHHcCCCCCCeEEEEe--CCEEeEeeecccCHHHHHHHHH
Q 037669 29 PPRAVKIDINI----ERDLAYALKVKECPQILFLL--GNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 29 ~vkvvKVDVDe----npeLA~~y~V~SIPTLi~FK--nGe~v~r~~G~~~keeL~~~L~ 81 (98)
.+.+++||+++ +++++.+|+|.++||++||+ ||+.+.+..|++++++|.++|+
T Consensus 46 ~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 46 DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 49999999998 68999999999999999998 8999999999999999998874
No 38
>PTZ00051 thioredoxin; Provisional
Probab=99.23 E-value=6.4e-11 Score=75.96 Aligned_cols=66 Identities=12% Similarity=0.078 Sum_probs=53.5
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQ 78 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~ 78 (98)
.|-+..+.|+++.+ +.+.+++++||+|++++++.+|+|.++||+++|++|+++.+..|. ..++|.+
T Consensus 32 ~C~~~~~~l~~l~~------~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-~~~~~~~ 97 (98)
T PTZ00051 32 PCKRIAPFYEECSK------EYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVVDTLLGA-NDEALKQ 97 (98)
T ss_pred HHHHHhHHHHHHHH------HcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEEEEEeCC-CHHHhhc
Confidence 34455566666554 234599999999999999999999999999999999999999997 5566543
No 39
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.21 E-value=9.7e-11 Score=75.02 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=60.7
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCC--CHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINI--ERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDe--npeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L 80 (98)
.|-+..+.++.+...+=. ...+.++++|+++ +++++.+|||.++||+++|++|+.+.+..|..++++|.++|
T Consensus 31 ~C~~~~~~~~~~~~~~~~---~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 31 HCKKMKPEFTKAATELKE---DGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred HHHHhCHHHHHHHHHHhh---CCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 455666777777665531 2348999999999 99999999999999999999999999999999999998764
No 40
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.21 E-value=1.1e-10 Score=89.52 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=68.2
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHhh
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFYY 85 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~ 85 (98)
.|-+..++++++.+.+ + ..+.+++||+|++++++++|+|+++||+++|++|+++....|.++.++|.+++...|-
T Consensus 66 ~Ck~~~P~~e~la~~~---~--~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 66 HCRKMAPAWERLAKAL---K--GQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred HHHHHHHHHHHHHHHc---C--CCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 4566778888887754 2 2389999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 037669 86 KA 87 (98)
Q Consensus 86 ~~ 87 (98)
+.
T Consensus 141 ~~ 142 (224)
T PTZ00443 141 KA 142 (224)
T ss_pred hh
Confidence 76
No 41
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.21 E-value=5.8e-11 Score=76.55 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=64.7
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCC--CCCeEEEEeC--CEEeEeeecccCHHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVK--ECPQILFLLG--NRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~--SIPTLi~FKn--Ge~v~r~~G~~~keeL~~~L~ 81 (98)
+|.+.++.++++.+-+= ++ ++|++||+|++++++++|||. ++||+++|++ |+......|.++.++|.++|+
T Consensus 26 ~~~~~~~~~~~vA~~~~-~~----v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~ 100 (103)
T cd02982 26 ESEELRERFKEVAKKFK-GK----LLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVE 100 (103)
T ss_pred hHHHHHHHHHHHHHHhC-Ce----EEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccCHHHHHHHHH
Confidence 46777888888777654 33 999999999999999999999 9999999999 888888888899999999998
Q ss_pred HHh
Q 037669 82 HFY 84 (98)
Q Consensus 82 ~~~ 84 (98)
.++
T Consensus 101 ~~~ 103 (103)
T cd02982 101 DFL 103 (103)
T ss_pred hhC
Confidence 763
No 42
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.18 E-value=2.2e-10 Score=79.53 Aligned_cols=69 Identities=16% Similarity=0.096 Sum_probs=55.6
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCH-----------hHHHHcC----CCCCCeEEEEeCCEEeEeeec-
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIER-----------DLAYALK----VKECPQILFLLGNRILYREKE- 69 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenp-----------eLA~~y~----V~SIPTLi~FKnGe~v~r~~G- 69 (98)
+|-+..+.|++.++- .+ +.|++||+|+++ ++.+.|+ |+++||+++||||+++++..|
T Consensus 37 ~C~~~~P~l~~~~~~---~~----~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~~~G~ 109 (122)
T TIGR01295 37 YCRKFSGTLSGVVAQ---TK----APIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVSVRCGS 109 (122)
T ss_pred hHHHHhHHHHHHHHh---cC----CcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEEEEeCC
Confidence 566777888887764 43 789999999765 4556654 667999999999999999999
Q ss_pred ccCHHHHHHHHH
Q 037669 70 FRTADELVQMIA 81 (98)
Q Consensus 70 ~~~keeL~~~L~ 81 (98)
..+.++|.+++.
T Consensus 110 ~~~~~~l~~~~~ 121 (122)
T TIGR01295 110 STTAQELQDIAA 121 (122)
T ss_pred CCCHHHHHHHhh
Confidence 667999998874
No 43
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.18 E-value=7e-11 Score=86.64 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=46.8
Q ss_pred CCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccC-------HHHHHHHHHH
Q 037669 28 LPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRT-------ADELVQMIAH 82 (98)
Q Consensus 28 ~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~-------keeL~~~L~~ 82 (98)
+.++|+|||+|++ +++.+|+|.++||+++||||+++++.+|+.. .+.|+.+|..
T Consensus 113 ~~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 113 PAVKFCKIRASAT-GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CCeEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 4599999999998 9999999999999999999999999999754 4566665544
No 44
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.16 E-value=3.2e-10 Score=74.50 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=62.2
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~ 82 (98)
.|-+..++++++.+.+= .. ...+.+.++|++++++++++|+|.++||+++|++| .+++..|..+.++|.++++.
T Consensus 29 ~C~~~~p~l~~l~~~~~-~~-~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 29 HCKKLEPVWNEVGAELK-SS-GSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred HHHhhChHHHHHHHHHH-hc-CCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-CceeecCCCCHHHHHHHHHh
Confidence 46667788888877652 11 24599999999999999999999999999999888 46889999999999999875
No 45
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.16 E-value=1.4e-10 Score=72.04 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=60.9
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCC-EEeEeeecccCHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGN-RILYREKEFRTADELVQMI 80 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnG-e~v~r~~G~~~keeL~~~L 80 (98)
.|-+..+.+++..+.+= ....+.+++||.+++++++.+|+|.++||+++|++| +...+..|..+.++|.+++
T Consensus 29 ~C~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 29 HCKALAPEYEKLAKELK---GDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred HHHhhhHHHHHHHHHhc---cCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhhC
Confidence 46677777877766541 134499999999999999999999999999999988 9999999999999988764
No 46
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.13 E-value=6.1e-10 Score=75.08 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=52.1
Q ss_pred CeEEEEeCCCC-------------HhHHHHcCCCCCCeEEEEeC--CEEeEeeecccCHHHHHHHHHHHhhc
Q 037669 30 PRAVKIDINIE-------------RDLAYALKVKECPQILFLLG--NRILYREKEFRTADELVQMIAHFYYK 86 (98)
Q Consensus 30 vkvvKVDVDen-------------peLA~~y~V~SIPTLi~FKn--Ge~v~r~~G~~~keeL~~~L~~~~~~ 86 (98)
+.+++||+|++ ++++.+|+|.++||++||.+ |+++.+..|+.+++++.++|+.++-+
T Consensus 50 ~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 50 FVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred eEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 78999999986 79999999999999999976 69999999999999999999887644
No 47
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.06 E-value=1.3e-09 Score=69.87 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=58.3
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCC-EEeEeeecccCHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGN-RILYREKEFRTADELVQMI 80 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnG-e~v~r~~G~~~keeL~~~L 80 (98)
.|-+..+.+.+....+ .+ .+.++++|+|++++++++|+|+++||+++|++| +...+..|.++.++|.+++
T Consensus 32 ~C~~~~~~~~~~~~~~-~~----~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 32 HCKNLAPEWKKAAKAL-KG----IVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred HHHHHhHHHHHHHHHh-cC----CceEEEEECcchHHHHHHCCCCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 4556667777765543 12 399999999999999999999999999999999 6677888999999998775
No 48
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.03 E-value=1e-09 Score=71.39 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=58.1
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCC--CHhHHHHcCCCCCCeEEEEeCCE-----EeEeeecccCHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINI--ERDLAYALKVKECPQILFLLGNR-----ILYREKEFRTADELVQ 78 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDe--npeLA~~y~V~SIPTLi~FKnGe-----~v~r~~G~~~keeL~~ 78 (98)
.|-+..++++++...+ .. .+.+++||+|+ +++++.+|+|.++||+++|++|+ ...+..|.++.++|.+
T Consensus 32 ~C~~~~~~~~~~a~~~-~~----~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~ 106 (109)
T cd03002 32 HCKNLKPEYAKAAKEL-DG----LVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVD 106 (109)
T ss_pred HHHhhChHHHHHHHHh-cC----CceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcccccccccccCccCHHHHHH
Confidence 3555667777765543 12 38999999999 99999999999999999999997 5678889999999998
Q ss_pred HHH
Q 037669 79 MIA 81 (98)
Q Consensus 79 ~L~ 81 (98)
+|.
T Consensus 107 fi~ 109 (109)
T cd03002 107 FVL 109 (109)
T ss_pred HhC
Confidence 873
No 49
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.00 E-value=2.4e-09 Score=79.33 Aligned_cols=52 Identities=19% Similarity=0.122 Sum_probs=48.1
Q ss_pred CCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHH
Q 037669 28 LPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 28 ~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~ 82 (98)
+.+.+.+||+|++++++.+|||+++||++++++|+. ..|..+.++|.++|..
T Consensus 163 ~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 163 DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHHHHHHHh
Confidence 459999999999999999999999999999999974 9999999999998864
No 50
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.00 E-value=2e-09 Score=68.70 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=60.7
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCE--EeEeeecccCHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNR--ILYREKEFRTADELVQMI 80 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe--~v~r~~G~~~keeL~~~L 80 (98)
-|-+..++++++.+.+= +...+.+++||.+++ +++..++|.++||+++|++|+ ...+..|..+.++|.++|
T Consensus 32 ~C~~~~~~~~~~~~~~~---~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 32 HCKALAPIYEELAEKLK---GDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred HHHHHhhHHHHHHHHhc---CCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 45667888888887653 346799999999998 689999999999999999998 788999999999998764
No 51
>PTZ00102 disulphide isomerase; Provisional
Probab=98.98 E-value=4.2e-09 Score=83.94 Aligned_cols=77 Identities=22% Similarity=0.190 Sum_probs=68.1
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHhh
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFYY 85 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~ 85 (98)
.|-+..++++++.+.+=.. ...+.+++||.+++++|+.+|+|.++||+++|++|+.+ +..|.++.++|.+++..+..
T Consensus 63 ~Ck~~~p~~~~~a~~~~~~--~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 63 HCKRLAPEYKKAAKMLKEK--KSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred HHHHhhHHHHHHHHHHHhc--CCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceE-EecCCCCHHHHHHHHHHhhC
Confidence 4567888999988876432 46799999999999999999999999999999999988 99999999999999998764
No 52
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.98 E-value=2.7e-09 Score=67.97 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=60.1
Q ss_pred hhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCC-CHhHHHHcCCCCCCeEEEEeCC-EEeEeeecccCHHHHHHHH
Q 037669 5 TKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINI-ERDLAYALKVKECPQILFLLGN-RILYREKEFRTADELVQMI 80 (98)
Q Consensus 5 ~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDe-npeLA~~y~V~SIPTLi~FKnG-e~v~r~~G~~~keeL~~~L 80 (98)
..|-+..+.++.+...+= ....+.++++|.++ +++++.+|+|.++||+++|++| +...+..|.++.++|.++|
T Consensus 31 ~~C~~~~~~~~~~~~~~~---~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 31 GHCKNLAPEYEKLAAVFA---NEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred HHHHhhChHHHHHHHHhC---CCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 345556677777766542 24569999999999 9999999999999999999888 7888899999999998764
No 53
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.98 E-value=4.2e-09 Score=82.46 Aligned_cols=78 Identities=22% Similarity=0.173 Sum_probs=67.9
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEE-eEeeecccCHHHHHHHHHHHh
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRI-LYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~-v~r~~G~~~keeL~~~L~~~~ 84 (98)
.|-+..++++++...+= . +.+.+.+++||.+++++++++|+|.++||+++|++|+. +.+..|.++.++|.+++....
T Consensus 32 ~c~~~~~~~~~~a~~~~-~-~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 32 HCKSLAPEYEKAADELK-K-KGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQS 109 (462)
T ss_pred HHHhhhHHHHHHHHHHh-h-cCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCccceeEecCCCCHHHHHHHHHHhc
Confidence 45666788888777653 3 35679999999999999999999999999999999999 899999999999999998876
Q ss_pred h
Q 037669 85 Y 85 (98)
Q Consensus 85 ~ 85 (98)
.
T Consensus 110 ~ 110 (462)
T TIGR01130 110 G 110 (462)
T ss_pred C
Confidence 3
No 54
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.98 E-value=3.2e-09 Score=70.40 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=48.8
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQ 78 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~ 78 (98)
.|-.+..=++++++. .+.+++..+|+|+.+++|++||||++||+++ ||+.+++ |..+.+++..
T Consensus 26 ~C~~~~~~~~~l~~~------~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e~~~ 88 (89)
T cd03026 26 NCPDVVQALNLMAVL------NPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEEILA 88 (89)
T ss_pred CcHHHHHHHHHHHHH------CCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHHHhh
Confidence 344555555555542 2349999999999999999999999999975 9999885 8778777653
No 55
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.92 E-value=7.8e-09 Score=77.16 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=51.3
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecc-------cCHHHHHHH
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEF-------RTADELVQM 79 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~-------~~keeL~~~ 79 (98)
|-..-+-|+++.+-+ +.++|+|||+|.. +..|+|.++||+++||||+++.+.+|+ .+.++|+.+
T Consensus 117 C~~m~~~l~~LA~k~------~~vkFvkI~ad~~---~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~ 187 (192)
T cd02988 117 CRLLNQHLSELARKF------PDTKFVKIISTQC---IPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWL 187 (192)
T ss_pred HHHHHHHHHHHHHHC------CCCEEEEEEhHHh---HhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHH
Confidence 334445555555443 4599999999964 789999999999999999999999996 455677766
Q ss_pred HHH
Q 037669 80 IAH 82 (98)
Q Consensus 80 L~~ 82 (98)
|..
T Consensus 188 L~~ 190 (192)
T cd02988 188 LVQ 190 (192)
T ss_pred HHh
Confidence 653
No 56
>PHA02125 thioredoxin-like protein
Probab=98.90 E-value=5.2e-09 Score=66.29 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=42.1
Q ss_pred CeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCH-HHHHHHH
Q 037669 30 PRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTA-DELVQMI 80 (98)
Q Consensus 30 vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~k-eeL~~~L 80 (98)
..+++||+|++++++.+|+|+++||++ +|+.+++..|+-++ .+|.+.|
T Consensus 25 ~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 25 YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHHh
Confidence 578999999999999999999999998 89999999998433 7777765
No 57
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.87 E-value=5.3e-09 Score=73.56 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=47.5
Q ss_pred CCeEEEEeCC-----CCHhHHHHcCCC--CCCeEEEEeCCE--EeEeeecc-cCHHHHHHHHHH
Q 037669 29 PPRAVKIDIN-----IERDLAYALKVK--ECPQILFLLGNR--ILYREKEF-RTADELVQMIAH 82 (98)
Q Consensus 29 ~vkvvKVDVD-----enpeLA~~y~V~--SIPTLi~FKnGe--~v~r~~G~-~~keeL~~~L~~ 82 (98)
.+.+.+||+| +|.+|+++|||. +.|||.+|+||+ ....-.|. ++.+.|.++|..
T Consensus 51 ~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 51 DLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred ceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence 3899999994 689999999999 999999999996 44567797 999999999875
No 58
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.82 E-value=1.1e-08 Score=67.00 Aligned_cols=72 Identities=26% Similarity=0.345 Sum_probs=51.8
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCC--------------------HhHHHHcCCCCCCeEEEE-eCCEEeE
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIE--------------------RDLAYALKVKECPQILFL-LGNRILY 65 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDen--------------------peLA~~y~V~SIPTLi~F-KnGe~v~ 65 (98)
|-+..+|+.+-....=.. ...+.++.+|++.. .+|+++|||.+.||++++ ++|+++.
T Consensus 20 C~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~~~~d~~G~~v~ 97 (112)
T PF13098_consen 20 CKKLEKELFPDNDVARYL--KDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTIVFLDKDGKIVY 97 (112)
T ss_dssp HHHHHHHHHHHHHHHCEE--HCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEEEECTTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHh--hcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEEEEEcCCCCEEE
Confidence 555666666533321111 12489999999975 469999999999999999 4999999
Q ss_pred eeecccCHHHHHHHH
Q 037669 66 REKEFRTADELVQMI 80 (98)
Q Consensus 66 r~~G~~~keeL~~~L 80 (98)
+..|++++++|..+|
T Consensus 98 ~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 98 RIPGYLSPEELLKML 112 (112)
T ss_dssp EEESS--HHHHHHHH
T ss_pred EecCCCCHHHHHhhC
Confidence 999999999999876
No 59
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.81 E-value=2.1e-08 Score=64.05 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=45.2
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCH-HHHHHHH
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTA-DELVQMI 80 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~k-eeL~~~L 80 (98)
|-++.+-++++..-+. -.+.+++|| +++.|.+|||+++||+++ ||+++ ..|..+. ++|.++|
T Consensus 13 C~~~~~~~~~~~~e~~-----~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 13 CQMTEKNVKKAVEELG-----IDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred HHHHHHHHHHHHHHcC-----CCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHHh
Confidence 4455555565555433 227787777 466699999999999999 99998 8887554 8888776
No 60
>PTZ00102 disulphide isomerase; Provisional
Probab=98.77 E-value=4.2e-08 Score=78.25 Aligned_cols=85 Identities=11% Similarity=0.004 Sum_probs=69.3
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEe-EeeecccCHHHHHHHHHHHh
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRIL-YREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v-~r~~G~~~keeL~~~L~~~~ 84 (98)
.|-...+.+++....+- +...+.++++|+|.|..++.+|+|+++||+++|++|..+ .+..|.++.++|.++|+.+.
T Consensus 389 ~C~~~~p~~~~~a~~~~---~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 389 HCKNLEPVYNELGEKYK---DNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred HHHHHHHHHHHHHHHhc---cCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcC
Confidence 46666777777665543 346699999999999999999999999999999988765 58999999999999999988
Q ss_pred hcCCCCCCC
Q 037669 85 YKARRPSWI 93 (98)
Q Consensus 85 ~~~~~p~~~ 93 (98)
-...++.-.
T Consensus 466 ~~~~~~~~~ 474 (477)
T PTZ00102 466 TNPFEDDTH 474 (477)
T ss_pred CCCcccccc
Confidence 654444433
No 61
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.4e-08 Score=84.72 Aligned_cols=77 Identities=23% Similarity=0.191 Sum_probs=69.9
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHhh
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFYY 85 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~ 85 (98)
|=...+|.+||-+.+=+. -++++.+|||..++.++|.+|+|.+.|||-+|+||+......|.+..+.|..+|.+..-
T Consensus 57 ck~LaPey~kAA~~Lke~--~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~g 133 (493)
T KOG0190|consen 57 CKALAPEYEKAATELKEE--GSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSG 133 (493)
T ss_pred hhhhCcHHHHHHHHhhcc--CCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcceeccCcccHHHHHHHHHhccC
Confidence 445678999999998855 68899999999999999999999999999999999998899999999999999987543
No 62
>PTZ00062 glutaredoxin; Provisional
Probab=98.71 E-value=8.9e-08 Score=72.72 Aligned_cols=50 Identities=10% Similarity=0.064 Sum_probs=44.4
Q ss_pred CCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHhh
Q 037669 27 RLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFYY 85 (98)
Q Consensus 27 ~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~ 85 (98)
-|.++|++||.| |+|++|||+++|+||+++.|..|.- ..+|.+.+.+++-
T Consensus 46 ~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i~r~~G~~-~~~~~~~~~~~~~ 95 (204)
T PTZ00062 46 FPSLEFYVVNLA--------DANNEYGVFEFYQNSQLINSLEGCN-TSTLVSFIRGWAQ 95 (204)
T ss_pred CCCcEEEEEccc--------cCcccceEEEEEECCEEEeeeeCCC-HHHHHHHHHHHcC
Confidence 467999999988 9999999999999999999999986 6678888877654
No 63
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.69 E-value=9.1e-08 Score=58.13 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=38.6
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeE
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILY 65 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~ 65 (98)
|-.+++-|+++.+. .+.+.+.++|+|++++++++|||+++||+++ ||+.++
T Consensus 14 C~~~~~~l~~l~~~------~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~~ 64 (67)
T cd02973 14 CPDAVQAANRIAAL------NPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVEF 64 (67)
T ss_pred cHHHHHHHHHHHHh------CCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEEE
Confidence 44455555555332 2349999999999999999999999999866 787654
No 64
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.67 E-value=1.1e-07 Score=63.19 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=55.1
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCC-CHhHHHH-cCCCCCCeEEEEeCC-EEeEeeecc-cCHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINI-ERDLAYA-LKVKECPQILFLLGN-RILYREKEF-RTADELVQMI 80 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDe-npeLA~~-y~V~SIPTLi~FKnG-e~v~r~~G~-~~keeL~~~L 80 (98)
.|-+..+.++++...+= ...+.+++||+|+ +..++.+ |+|.++||+++|++| ....+..|- ++.+.|..+|
T Consensus 35 ~C~~~~~~~~~la~~~~----~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 35 FCQAMEASYEELAEKLA----GSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred HHHHHhHHHHHHHHHhc----cCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 46667778887766532 2359999999998 6888874 999999999999776 567788884 8888887664
No 65
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=5.9e-08 Score=77.62 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHhhcCC
Q 037669 27 RLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFYYKAR 88 (98)
Q Consensus 27 ~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~~~~ 88 (98)
-|...|.|||||+.+..|+.+||.++||+|+|+||.-+.++.|+ ...-|+++++.|.-+.+
T Consensus 50 Yp~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~kid~~qGA-d~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 50 YPGAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVKIDQIQGA-DASGLEEKVAKYASTSA 110 (288)
T ss_pred CcccEEEEEeHHHhhchhhhcCcccCceEEEEecCeEeeeecCC-CHHHHHHHHHHHhccCc
Confidence 57789999999999999999999999999999999999999998 55679999998877654
No 66
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.49 E-value=5.9e-07 Score=64.36 Aligned_cols=50 Identities=22% Similarity=0.171 Sum_probs=43.6
Q ss_pred EeCCCCHhHHHHcCCCCCCe-EEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 35 IDINIERDLAYALKVKECPQ-ILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 35 VDVDenpeLA~~y~V~SIPT-Li~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
+..|.+.+++.+|+|.++|| +++.+||+++++..|.+++++|++.|..++
T Consensus 121 v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 121 ILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred EEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 44577778999999999995 555589999999999999999999999887
No 67
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.48 E-value=2.5e-07 Score=65.04 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=40.4
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCC-------CHhHHHHcCCC-CCCeEEEEeCCE
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINI-------ERDLAYALKVK-ECPQILFLLGNR 62 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDe-------npeLA~~y~V~-SIPTLi~FKnGe 62 (98)
+|-...+.|+++...+- ..++|++||+|+ +.+++.+|+|+ +|||+++|++|+
T Consensus 42 pCr~~~P~l~~l~~~~~-----~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 42 DCVKAEPVVREALKAAP-----EDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQ 101 (119)
T ss_pred hHHhhchhHHHHHHHCC-----CCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCc
Confidence 34455566777655432 139999999987 46999999999 999999999885
No 68
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.47 E-value=1.4e-06 Score=58.35 Aligned_cols=56 Identities=18% Similarity=0.177 Sum_probs=50.9
Q ss_pred CeEEEEeCC--CCHhHHHHcCCCCCCeEEEEe--CCEEeEeeecccCHHHHHHHHHHHhh
Q 037669 30 PRAVKIDIN--IERDLAYALKVKECPQILFLL--GNRILYREKEFRTADELVQMIAHFYY 85 (98)
Q Consensus 30 vkvvKVDVD--enpeLA~~y~V~SIPTLi~FK--nGe~v~r~~G~~~keeL~~~L~~~~~ 85 (98)
.-++++|++ +..+++..|++.+.||++++. +|+++.+..|..+.+++.+.|+.+..
T Consensus 53 ~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 53 FIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred EEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 678888987 688999999999999999995 79999999999999999999988654
No 69
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.46 E-value=3.8e-07 Score=77.41 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=49.7
Q ss_pred CCeEEEEeCCC----CHhHHHHcCCCCCCeEEEEe-CCEE--eEeeecccCHHHHHHHHHHH
Q 037669 29 PPRAVKIDINI----ERDLAYALKVKECPQILFLL-GNRI--LYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 29 ~vkvvKVDVDe----npeLA~~y~V~SIPTLi~FK-nGe~--v~r~~G~~~keeL~~~L~~~ 83 (98)
.+.++++|+|+ +++++++|+|.++||+++|+ ||++ +.|.+|+.+++++.+.|++.
T Consensus 508 ~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 508 DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 48999999986 47999999999999999996 8999 58999999999999999864
No 70
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.43 E-value=7.4e-07 Score=60.46 Aligned_cols=61 Identities=11% Similarity=0.010 Sum_probs=48.0
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCC--CCHhHHHHcCCCCCCeEEEEeCCEEeEeeec
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDIN--IERDLAYALKVKECPQILFLLGNRILYREKE 69 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVD--enpeLA~~y~V~SIPTLi~FKnGe~v~r~~G 69 (98)
.|-+..+.++++.+.+..+ ...+.+++||.+ ++++++++|+|+++||+++|++|. .....|
T Consensus 33 ~C~~~~~~~~~la~~~~~~--~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~-~~~~~~ 95 (114)
T cd02992 33 HCRAFAPTWKKLARDLRKW--RPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFS-KEATDG 95 (114)
T ss_pred HHHHHhHHHHHHHHHHHhc--CCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCCC-ccCCCC
Confidence 4556678888888887643 234899999964 588999999999999999999998 444433
No 71
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.40 E-value=1.3e-06 Score=73.40 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=56.5
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCH-hHH-HHcCCCCCCeEEEEeCCEE-eEeee-cccCHHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIER-DLA-YALKVKECPQILFLLGNRI-LYREK-EFRTADELVQMIA 81 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenp-eLA-~~y~V~SIPTLi~FKnGe~-v~r~~-G~~~keeL~~~L~ 81 (98)
.|-...+.++++.+.+... .++|++||+|.++ +++ ++|+|+++||++||++|.. ..... |-++.+.|..+++
T Consensus 385 ~Ck~m~P~~eelA~~~~~~----~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~ 460 (463)
T TIGR00424 385 FCQAMEASYLELAEKLAGS----GVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVN 460 (463)
T ss_pred HHHHHHHHHHHHHHHhccC----CcEEEEEECCCCccHHHHHHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHH
Confidence 3556677888887766422 3899999999864 565 6899999999999999963 23343 6899999999887
Q ss_pred HH
Q 037669 82 HF 83 (98)
Q Consensus 82 ~~ 83 (98)
.+
T Consensus 461 ~~ 462 (463)
T TIGR00424 461 LL 462 (463)
T ss_pred hh
Confidence 54
No 72
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.39 E-value=7.4e-07 Score=75.93 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=44.8
Q ss_pred EEEeCCCCHhHHHHcCCCCCCeEEEE-eCCEEeEeeecccCHHHHHHHHH
Q 037669 33 VKIDINIERDLAYALKVKECPQILFL-LGNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 33 vKVDVDenpeLA~~y~V~SIPTLi~F-KnGe~v~r~~G~~~keeL~~~L~ 81 (98)
+.|++|.+.+++.+|+|+++||++|+ ++|+++++..|.++.++|.++|+
T Consensus 121 ~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 121 LPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred cceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 45778899999999999999999555 89999999999999999999988
No 73
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.35 E-value=6.4e-06 Score=57.33 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=58.4
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCC----------------------CCHhHHHHcCCCCCCeEEEE-eCCE
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDIN----------------------IERDLAYALKVKECPQILFL-LGNR 62 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVD----------------------enpeLA~~y~V~SIPTLi~F-KnGe 62 (98)
.|-+..+.|.+..+.+... .++++-|+.| .+.+++++|||+++|+++++ ++|+
T Consensus 75 ~C~~~~~~l~~~~~~~~~~----~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~ 150 (173)
T PRK03147 75 PCEKEMPYMNELYPKYKEK----GVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGK 150 (173)
T ss_pred HHHHHHHHHHHHHHHhhcC----CeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeEEEECCCCc
Confidence 3445556666666655533 3888888875 45788999999999998888 6999
Q ss_pred EeEeeecccCHHHHHHHHHHH
Q 037669 63 ILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 63 ~v~r~~G~~~keeL~~~L~~~ 83 (98)
++....|..+.+++.+.|+.+
T Consensus 151 i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 151 VVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred EEEEEeCCCCHHHHHHHHHHh
Confidence 999999999999999998753
No 74
>PLN02309 5'-adenylylsulfate reductase
Probab=98.32 E-value=2.6e-06 Score=71.50 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=58.4
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCC-CCHhHHH-HcCCCCCCeEEEEeCCEEe-Eeee-cccCHHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDIN-IERDLAY-ALKVKECPQILFLLGNRIL-YREK-EFRTADELVQMIA 81 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVD-enpeLA~-~y~V~SIPTLi~FKnGe~v-~r~~-G~~~keeL~~~L~ 81 (98)
.|-+..+.++++.+.+= ...++|++||+| .+.+++. .|+|.++||++||++|.-. .+.. |-++.+.|..+++
T Consensus 379 ~Cq~m~p~~e~LA~~~~----~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~ 454 (457)
T PLN02309 379 FCQAMEASYEELAEKLA----GSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVN 454 (457)
T ss_pred HHHHHHHHHHHHHHHhc----cCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHH
Confidence 46667778888877642 235999999999 8899997 5999999999999998743 2333 4789999999988
Q ss_pred HH
Q 037669 82 HF 83 (98)
Q Consensus 82 ~~ 83 (98)
.+
T Consensus 455 ~~ 456 (457)
T PLN02309 455 SL 456 (457)
T ss_pred Hh
Confidence 64
No 75
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.32 E-value=7.4e-06 Score=59.50 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=37.8
Q ss_pred HHHHcCCCCCCeEEEE-eCCEEeEeeecccCHHHHHHHHHHHhhc
Q 037669 43 LAYALKVKECPQILFL-LGNRILYREKEFRTADELVQMIAHFYYK 86 (98)
Q Consensus 43 LA~~y~V~SIPTLi~F-KnGe~v~r~~G~~~keeL~~~L~~~~~~ 86 (98)
++.+|||.++||.+++ ++|+++++..|.+++++|++.|+.++-+
T Consensus 134 ~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 134 LGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred HHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 5568999999965555 7999999999999999999999988743
No 76
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.32 E-value=1.4e-06 Score=58.38 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=36.2
Q ss_pred EeCCCCHhHHHHcCCCCCC-eEEEEeCCEEeEeeecccCHHHH
Q 037669 35 IDINIERDLAYALKVKECP-QILFLLGNRILYREKEFRTADEL 76 (98)
Q Consensus 35 VDVDenpeLA~~y~V~SIP-TLi~FKnGe~v~r~~G~~~keeL 76 (98)
+.+|.+.+++.+|+|.++| |+++.++|+++.+..|.++++.|
T Consensus 84 ~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 84 VGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred EEECCcchHHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 4567888999999999999 55555899999999999999876
No 77
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.26 E-value=6.7e-06 Score=48.87 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=37.3
Q ss_pred CCeEEEEeCCCCHhH----HHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHH
Q 037669 29 PPRAVKIDINIERDL----AYALKVKECPQILFLLGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 29 ~vkvvKVDVDenpeL----A~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L 80 (98)
.+.+..+|++++++. .+.+|+.++||++++ |+. ..|+ +.++|.++|
T Consensus 24 ~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~-~~~~i~~~i 73 (74)
T TIGR02196 24 GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGF-DPEKLDQLL 73 (74)
T ss_pred CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeC-CHHHHHHHh
Confidence 488999999998775 456999999999985 764 7785 678888776
No 78
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.21 E-value=7.6e-06 Score=51.01 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=49.1
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCC-----------------------HhHHHHcCCCCCCeEEEE-eCC
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIE-----------------------RDLAYALKVKECPQILFL-LGN 61 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDen-----------------------peLA~~y~V~SIPTLi~F-KnG 61 (98)
.|....+.|.++...+- .+.+.++.|++|.+ .+++..|++.++|+++++ ++|
T Consensus 33 ~C~~~~~~l~~~~~~~~----~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g 108 (116)
T cd02966 33 PCRAEMPELEALAKEYK----DDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLPTTFLIDRDG 108 (116)
T ss_pred hHHHHhHHHHHHHHHhC----CCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCccceEEEECCCC
Confidence 35666667777665542 35599999999997 899999999999999999 699
Q ss_pred EEeEeeec
Q 037669 62 RILYREKE 69 (98)
Q Consensus 62 e~v~r~~G 69 (98)
+++.+..|
T Consensus 109 ~v~~~~~g 116 (116)
T cd02966 109 RIRARHVG 116 (116)
T ss_pred cEEEEecC
Confidence 99998876
No 79
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.18 E-value=3.3e-06 Score=64.37 Aligned_cols=53 Identities=17% Similarity=0.368 Sum_probs=46.2
Q ss_pred CCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 27 RLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 27 ~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
..+...|+.+++++.+|++++||++.||++ |.||+.+ .|+++.++|.++|+..
T Consensus 178 ~~~~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 178 DVSPASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred CCCcccccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 344446788999999999999999999999 8899876 8999999999999753
No 80
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.16 E-value=1.7e-05 Score=50.40 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=35.7
Q ss_pred CeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeec-ccCHHHHHHHHH
Q 037669 30 PRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKE-FRTADELVQMIA 81 (98)
Q Consensus 30 vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G-~~~keeL~~~L~ 81 (98)
+++=-+|+.+.+++ .+||||++||+++ ||+++ ..| .-+.++|.++|+
T Consensus 29 i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~--~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 29 IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVV--FVGRVPSKEELKELLE 76 (76)
T ss_dssp EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEE--EESS--HHHHHHHHHH
T ss_pred CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEE--EEecCCCHHHHHHHhC
Confidence 66666677777777 9999999999966 89855 688 888899998875
No 81
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.15 E-value=2.9e-05 Score=60.67 Aligned_cols=56 Identities=18% Similarity=0.155 Sum_probs=46.0
Q ss_pred CeEEEEeCCC-----------CHhHHHHcCCCCCCeEEEEeC-CEEe-EeeecccCHHHHHHHHHHHhh
Q 037669 30 PRAVKIDINI-----------ERDLAYALKVKECPQILFLLG-NRIL-YREKEFRTADELVQMIAHFYY 85 (98)
Q Consensus 30 vkvvKVDVDe-----------npeLA~~y~V~SIPTLi~FKn-Ge~v-~r~~G~~~keeL~~~L~~~~~ 85 (98)
+.|+-|++|. +..++++|||.++||+++|+. |+.+ ....|+++.++|.+.|...-.
T Consensus 197 ~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 197 IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 8888889887 468999999999999999985 5444 456699999999988876543
No 82
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.14 E-value=2.1e-06 Score=66.52 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeeccc--------CHHHHHHHHH
Q 037669 14 LEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFR--------TADELVQMIA 81 (98)
Q Consensus 14 l~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~--------~keeL~~~L~ 81 (98)
|+...--.|+ .+|+|||+...|=|+.+++|..+||+++|+||+.+.+++||- +-+.|+..|.
T Consensus 106 Le~LAk~h~e------TrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~ 175 (211)
T KOG1672|consen 106 LEILAKRHVE------TRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLA 175 (211)
T ss_pred HHHHHHhccc------ceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHh
Confidence 5555555563 689999999999999999999999999999999999999984 3456666654
No 83
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.13 E-value=9.5e-06 Score=63.66 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=62.1
Q ss_pred hhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEe--EeeecccCHHHHHHHHHH
Q 037669 5 TKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRIL--YREKEFRTADELVQMIAH 82 (98)
Q Consensus 5 ~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v--~r~~G~~~keeL~~~L~~ 82 (98)
..|-+..+.++++...+=.. ...++|+++|++.|.- .. |+|.++||+++|++|... .+..|..+.++|.++|+.
T Consensus 377 ~~C~~~~p~~~~~~~~~~~~--~~~i~~~~id~~~n~~-~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 452 (462)
T TIGR01130 377 GHCKNLAPIYEELAEKYKDA--ESDVVIAKMDATANDV-PP-FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAK 452 (462)
T ss_pred HhHHHHHHHHHHHHHHhhcC--CCcEEEEEEECCCCcc-CC-CCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHh
Confidence 35667778888887776421 2359999999998854 44 999999999999999864 678899999999999987
Q ss_pred Hhhc
Q 037669 83 FYYK 86 (98)
Q Consensus 83 ~~~~ 86 (98)
+--.
T Consensus 453 ~~~~ 456 (462)
T TIGR01130 453 HATF 456 (462)
T ss_pred cCCC
Confidence 6543
No 84
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.11 E-value=1.6e-06 Score=63.07 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=43.5
Q ss_pred CCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHH
Q 037669 29 PPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 29 ~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L 80 (98)
+...++.+++++.++++++||+++||++ |+||+. ..|+.+.++|.++|
T Consensus 150 ~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 150 PAASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred CccccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 5678999999999999999999999997 999987 58999999998764
No 85
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.10 E-value=6.6e-06 Score=54.34 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=38.5
Q ss_pred CCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHH
Q 037669 37 INIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQM 79 (98)
Q Consensus 37 VDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~ 79 (98)
.|.+.+++.+|+|.++||++++.+|.++++..|+.++++|.+.
T Consensus 79 ~d~~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 79 NDPDGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred ECCCcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 4677899999999999999999766699999999999999764
No 86
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.10 E-value=4.1e-06 Score=65.75 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=44.0
Q ss_pred CCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccC-------HHHHHHHHHH
Q 037669 27 RLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRT-------ADELVQMIAH 82 (98)
Q Consensus 27 ~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~-------keeL~~~L~~ 82 (98)
-|.++||||....-+ +...|.+..+|||++||+|.++.+.+|+.. .++|+.+|..
T Consensus 175 yp~vKFvkI~a~~~~-~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 175 YPEVKFVKIRASKCP-ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIE 236 (265)
T ss_dssp -TTSEEEEEEECGCC-TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHT
T ss_pred CCceEEEEEehhccC-cccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHH
Confidence 577999999999887 889999999999999999999999999753 2456666653
No 87
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.07 E-value=4.4e-05 Score=55.32 Aligned_cols=71 Identities=8% Similarity=0.044 Sum_probs=51.8
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCC------------HhHH-HHc---CCCCCCeEEEE-eCCE-EeEeee
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIE------------RDLA-YAL---KVKECPQILFL-LGNR-ILYREK 68 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDen------------peLA-~~y---~V~SIPTLi~F-KnGe-~v~r~~ 68 (98)
|-+..+.|++..+- ++ +.|+-||+|+. ++++ ..| +|.++||++++ ++|. ++.+..
T Consensus 65 Cr~e~P~L~~l~~~---~~----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~~~~~ 137 (153)
T TIGR02738 65 CHQFAPVLKRFSQQ---FG----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAYPVLQ 137 (153)
T ss_pred HHHHHHHHHHHHHH---cC----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEEEEee
Confidence 44556666665443 33 78888888864 4444 345 89999999999 3555 567899
Q ss_pred cccCHHHHHHHHHHHh
Q 037669 69 EFRTADELVQMIAHFY 84 (98)
Q Consensus 69 G~~~keeL~~~L~~~~ 84 (98)
|.+++++|++.|+.++
T Consensus 138 G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 138 GAVDEAELANRMDEIL 153 (153)
T ss_pred cccCHHHHHHHHHHhC
Confidence 9999999999988753
No 88
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.05 E-value=1e-05 Score=56.87 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=43.4
Q ss_pred CeEEEEeCCCCHhHHHH--------cCCCCCCeEEEE-eCCEEeEeeecc-----cCHHHHHHHHHH
Q 037669 30 PRAVKIDINIERDLAYA--------LKVKECPQILFL-LGNRILYREKEF-----RTADELVQMIAH 82 (98)
Q Consensus 30 vkvvKVDVDenpeLA~~--------y~V~SIPTLi~F-KnGe~v~r~~G~-----~~keeL~~~L~~ 82 (98)
+.+++||+|++|++++. ||+.+.||++|+ .+|+++.+..|+ .+...+.+.|+.
T Consensus 51 fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 51 FVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence 88999999999999874 599999999999 789999999888 444445555443
No 89
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.04 E-value=6.6e-06 Score=56.48 Aligned_cols=74 Identities=11% Similarity=0.034 Sum_probs=49.2
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCH-hHHHHcCCCC--CCeEEEEe-CCEEeEee---ecccCHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIER-DLAYALKVKE--CPQILFLL-GNRILYRE---KEFRTADELVQ 78 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenp-eLA~~y~V~S--IPTLi~FK-nGe~v~r~---~G~~~keeL~~ 78 (98)
.|-+..+.+.+.....- . ..+|+.||+|+++ .++++|++.+ +||++||. +|+++.+. .|....+...+
T Consensus 33 ~C~~~~~~~~~~~~~~~-~----~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~~~~~~~~~f~~ 107 (117)
T cd02959 33 ACKALKPKFAESKEISE-L----SHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIINKKGNPNYKYFYS 107 (117)
T ss_pred HHHHHHHHHhhhHHHHh-h----cCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhccCCCCccccccCC
Confidence 34555555666444321 2 2578888998886 5678999987 99999995 99998854 45555555545
Q ss_pred HHHHHh
Q 037669 79 MIAHFY 84 (98)
Q Consensus 79 ~L~~~~ 84 (98)
.|+..+
T Consensus 108 ~~~~~~ 113 (117)
T cd02959 108 SAAQVT 113 (117)
T ss_pred CHHHHH
Confidence 454443
No 90
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.01 E-value=2.6e-05 Score=52.55 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=47.3
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCC------------------------HhHHHHcCCCCCCeEEEEe-C
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIE------------------------RDLAYALKVKECPQILFLL-G 60 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDen------------------------peLA~~y~V~SIPTLi~FK-n 60 (98)
.|-+..++|+++.+.+... ...++++-|++|++ ..++.+|||.++||++++. |
T Consensus 32 ~C~~~~p~l~~~~~~~~~~--~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~ 109 (131)
T cd03009 32 PCRAFTPKLVEFYEKLKES--GKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDAD 109 (131)
T ss_pred HHHHHhHHHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 4667788888888777643 23578888888866 4688999999999999995 9
Q ss_pred CEEeEee
Q 037669 61 NRILYRE 67 (98)
Q Consensus 61 Ge~v~r~ 67 (98)
|+++.+.
T Consensus 110 G~i~~~~ 116 (131)
T cd03009 110 GEVVTTD 116 (131)
T ss_pred CCEEccc
Confidence 9988774
No 91
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.01 E-value=3.4e-05 Score=64.59 Aligned_cols=62 Identities=23% Similarity=0.257 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHH
Q 037669 13 ELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 13 el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L 80 (98)
.+++|++.+=.. .|.+..--||+.+.|+++++|+|||+|++++ ||+.++ .|..+.+++.++|
T Consensus 493 ~~~~~~~~~~~~--~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~~--~G~~~~~~~~~~~ 554 (555)
T TIGR03143 493 DVVLAAQRIASL--NPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQVY--FGKKTIEEMLELI 554 (555)
T ss_pred HHHHHHHHHHHh--CCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEEE--eeCCCHHHHHHhh
Confidence 344555544433 3469999999999999999999999999988 898774 4988999999887
No 92
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.99 E-value=3.5e-05 Score=69.78 Aligned_cols=48 Identities=10% Similarity=0.089 Sum_probs=43.4
Q ss_pred CCCHhHHHHcCCCCCCeEEEE-eCCEEeEeeecccCHHHHHHHHHHHhh
Q 037669 38 NIERDLAYALKVKECPQILFL-LGNRILYREKEFRTADELVQMIAHFYY 85 (98)
Q Consensus 38 DenpeLA~~y~V~SIPTLi~F-KnGe~v~r~~G~~~keeL~~~L~~~~~ 85 (98)
|.+.+++.+|+|.++||+++| ++|+++++..|...+++|+++|+..+.
T Consensus 489 D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 489 DGDMYLWRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCchHHHHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 446788999999999999999 899999999999999999999987643
No 93
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=1.5e-05 Score=60.42 Aligned_cols=42 Identities=12% Similarity=0.384 Sum_probs=38.4
Q ss_pred CHhHHHHcCCCCCCeEEEE-eCCEEeEeeecccCHHHHHHHHH
Q 037669 40 ERDLAYALKVKECPQILFL-LGNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 40 npeLA~~y~V~SIPTLi~F-KnGe~v~r~~G~~~keeL~~~L~ 81 (98)
..|||+.|+|+|.||++|| ++|+-+..+-|++|+++....++
T Consensus 104 ~~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 104 TEELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred HHHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 4599999999999999999 88999999999999999877663
No 94
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.92 E-value=6.5e-05 Score=51.18 Aligned_cols=63 Identities=11% Similarity=0.039 Sum_probs=48.0
Q ss_pred hhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCH-------------------------hHHHHcCCCCCCeEEEEe
Q 037669 5 TKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIER-------------------------DLAYALKVKECPQILFLL 59 (98)
Q Consensus 5 ~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenp-------------------------eLA~~y~V~SIPTLi~FK 59 (98)
..|-+..++|++....+-.. ...+.++-|++|+++ ++++.|+|.++||++++.
T Consensus 30 ~~C~~~~p~l~~l~~~~~~~--~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~iPt~~lid 107 (132)
T cd02964 30 PPCRAFTPKLVEFYEKLKEE--GKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLK 107 (132)
T ss_pred chHHHHHHHHHHHHHHHhhc--CCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCCCCCCEEEEEC
Confidence 45777888888877766422 246889999988764 577889999999999995
Q ss_pred -CCEEeEeeec
Q 037669 60 -GNRILYREKE 69 (98)
Q Consensus 60 -nGe~v~r~~G 69 (98)
+|+++.+..+
T Consensus 108 ~~G~iv~~~~~ 118 (132)
T cd02964 108 PDGDVVTTNAR 118 (132)
T ss_pred CCCCEEchhHH
Confidence 8998876543
No 95
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.85 E-value=2.4e-05 Score=54.73 Aligned_cols=64 Identities=25% Similarity=0.241 Sum_probs=51.7
Q ss_pred chhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHH
Q 037669 4 ATKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADE 75 (98)
Q Consensus 4 ~~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~kee 75 (98)
..|..=-++||.||.+-. +...-|+-+.++.|+.+|||...|+|+||++|+.++.+.|.++=++
T Consensus 43 ~~DvaVILPEL~~af~~~--------~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 43 TADVAVILPELVKAFPGR--------FRGAVVARAAERALAARFGVRRWPALVFFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp CCHHHHHHHHHHCTSTTS--------EEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEEEEEEESSSTHHH
T ss_pred cccceeEcHHHHHhhhCc--------cceEEECchhHHHHHHHhCCccCCeEEEEECCEEEEEecCeecccc
Confidence 455666799999985533 3455667889999999999999999999999999999999987543
No 96
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.67 E-value=9.2e-05 Score=45.00 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=35.1
Q ss_pred CeEEEEeCCCCHhHHHHc-----CCCCCCeEEEEeCCEEeEeeecccCHHHHHHHH
Q 037669 30 PRAVKIDINIERDLAYAL-----KVKECPQILFLLGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 30 vkvvKVDVDenpeLA~~y-----~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L 80 (98)
+.+-.+|+|++++.+..+ ++++|||+ +|.+|+.+.+..+ .+|.+.|
T Consensus 25 ~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~~~~~----~~~~~~l 75 (77)
T TIGR02200 25 AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLTNPSA----AQVKAKL 75 (77)
T ss_pred CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEecCCCH----HHHHHHh
Confidence 667789999999988885 99999997 6899987665443 3554444
No 97
>smart00594 UAS UAS domain.
Probab=97.67 E-value=8.7e-05 Score=50.83 Aligned_cols=51 Identities=10% Similarity=0.116 Sum_probs=43.8
Q ss_pred CeEEEEeCC--CCHhHHHHcCCCCCCeEEEE-eCC-----EEeEeeecccCHHHHHHHH
Q 037669 30 PRAVKIDIN--IERDLAYALKVKECPQILFL-LGN-----RILYREKEFRTADELVQMI 80 (98)
Q Consensus 30 vkvvKVDVD--enpeLA~~y~V~SIPTLi~F-KnG-----e~v~r~~G~~~keeL~~~L 80 (98)
.-+.++|++ +..+++.+|++.+.||++++ .+| +++.++.|.++.++|.+.|
T Consensus 63 fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 63 FIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 667677765 56789999999999999999 666 5799999999999999876
No 98
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.67 E-value=0.0002 Score=49.63 Aligned_cols=55 Identities=11% Similarity=0.135 Sum_probs=47.9
Q ss_pred CeEEEEeCCC--CHhHHHHcCCCCCCeEEEE----eCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 30 PRAVKIDINI--ERDLAYALKVKECPQILFL----LGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 30 vkvvKVDVDe--npeLA~~y~V~SIPTLi~F----KnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
.-+...|++. ..++|.++++.+.|+++++ .+++++.|+.|.++.++|+..|..+.
T Consensus 53 fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 53 MLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 7888889864 4679999999999999999 24567999999999999999998764
No 99
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.65 E-value=0.0008 Score=47.32 Aligned_cols=83 Identities=16% Similarity=0.180 Sum_probs=66.7
Q ss_pred HHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCC--CCeEEEEeCCEEeEe-eecccCHHHHHHHHHHHh
Q 037669 8 WKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKE--CPQILFLLGNRILYR-EKEFRTADELVQMIAHFY 84 (98)
Q Consensus 8 ~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~S--IPTLi~FKnGe~v~r-~~G~~~keeL~~~L~~~~ 84 (98)
.+.+..|.++.+.+ + .-|+.|+=+|.++.+.+++.|||.+ .|+++++...+..+. ..|-.+.+.|.++++.++
T Consensus 40 ~~~~~~l~~vAk~~---k-gk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l 115 (130)
T cd02983 40 NKYLEILKSVAEKF---K-KKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELS 115 (130)
T ss_pred HHHHHHHHHHHHHh---c-CCcEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHH
Confidence 34566666666655 3 2349999999999999999999964 999999987665777 789999999999999999
Q ss_pred hcCCCCCCCC
Q 037669 85 YKARRPSWID 94 (98)
Q Consensus 85 ~~~~~p~~~~ 94 (98)
.|.....-++
T Consensus 116 ~Gkl~~~~~~ 125 (130)
T cd02983 116 YGRGPTLPVN 125 (130)
T ss_pred cCCcccccCC
Confidence 9976554444
No 100
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00025 Score=56.73 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=62.8
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHhh
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFYY 85 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~ 85 (98)
.|-...++.+|+...+=. .+.+..||.++++++.++|+|.+.||+.+|.+|.......|....+.+.+++.....
T Consensus 61 ~c~~l~~~~~~~~~~l~~-----~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (383)
T KOG0191|consen 61 HCKKLAPTYKKLAKALKG-----KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAESLAEFLIKELE 135 (383)
T ss_pred chhhhchHHHHHHHHhcC-----ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHHHHHHHHHHhhc
Confidence 344555666666666542 499999999999999999999999999999999778888889999999888877665
Q ss_pred c
Q 037669 86 K 86 (98)
Q Consensus 86 ~ 86 (98)
.
T Consensus 136 ~ 136 (383)
T KOG0191|consen 136 P 136 (383)
T ss_pred c
Confidence 4
No 101
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.58 E-value=0.00044 Score=37.39 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=39.9
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHH---HcCCCCCCeEEEEeCC
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAY---ALKVKECPQILFLLGN 61 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~---~y~V~SIPTLi~FKnG 61 (98)
.|.+.++.+.+. ..+ ...+.+..+|+++..+... .+++.++|+++++.+|
T Consensus 11 ~c~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 11 FCQALRPVLAEL--ALL----NKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred hHHhhhhHHHHH--Hhh----CCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 455666666654 333 4459999999999998876 8999999999999988
No 102
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.58 E-value=0.0014 Score=46.26 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=44.2
Q ss_pred CHhHHHHcCCCCCCeEEEE-eCCEEeEeee---------cccCHHHHHHHHHHHhhcCCCCCCC
Q 037669 40 ERDLAYALKVKECPQILFL-LGNRILYREK---------EFRTADELVQMIAHFYYKARRPSWI 93 (98)
Q Consensus 40 npeLA~~y~V~SIPTLi~F-KnGe~v~r~~---------G~~~keeL~~~L~~~~~~~~~p~~~ 93 (98)
+..++..|||+.+|+++++ ++|+++++.. +-.+.++|.+.|+..+-+..+|-..
T Consensus 98 ~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 161 (171)
T cd02969 98 TQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQ 161 (171)
T ss_pred chHHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCccc
Confidence 4467889999999999999 6999998741 3357799999999999998877543
No 103
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00027 Score=56.57 Aligned_cols=85 Identities=20% Similarity=0.246 Sum_probs=72.9
Q ss_pred HhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEE-eEeeecccCHHHHHHHHHHHhhcC
Q 037669 9 KTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRI-LYREKEFRTADELVQMIAHFYYKA 87 (98)
Q Consensus 9 ~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~-v~r~~G~~~keeL~~~L~~~~~~~ 87 (98)
...+|.+++.+.+-. ...+++.++|.+.++.++..++|.+.||+++|++|.. ..-..|.+..+.|.+++....-..
T Consensus 179 ~l~~~~~~~a~~~~~---~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 179 KLAPEWEKLAKLLKS---KENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred hcChHHHHHHHHhcc---CcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 334889999986652 3559999999999999999999999999999999999 999999999999999999888776
Q ss_pred CCCCCCCcC
Q 037669 88 RRPSWIDKT 96 (98)
Q Consensus 88 ~~p~~~~~~ 96 (98)
..|+.+.++
T Consensus 256 ~~~~~~~~~ 264 (383)
T KOG0191|consen 256 IPEPELKEI 264 (383)
T ss_pred CCCcccccc
Confidence 566666553
No 104
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.56 E-value=0.00028 Score=58.34 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeE-eeecccCHHHHHHHHHHHh
Q 037669 10 TLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILY-REKEFRTADELVQMIAHFY 84 (98)
Q Consensus 10 ~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~-r~~G~~~keeL~~~L~~~~ 84 (98)
+.+=.+.|...+=+..--..+.+.+||.|.+-+||.+|.|.-.|||-+|+||++.. ..-|-++-+.|.+++++-.
T Consensus 31 L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 31 LKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred HhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhccchhHHHHHHHHHHHh
Confidence 34445556555543332356999999999999999999999999999999999999 5678999999999887654
No 105
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.53 E-value=0.00015 Score=60.41 Aligned_cols=53 Identities=21% Similarity=0.361 Sum_probs=47.5
Q ss_pred CCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHH
Q 037669 27 RLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 27 ~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L 80 (98)
..|+++.|+|...-|.+|.+|||++.||+.+||+|-.+ ..-|-+.|+.|.++-
T Consensus 76 g~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~-dYRG~R~Kd~iieFA 128 (468)
T KOG4277|consen 76 GLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAI-DYRGGREKDAIIEFA 128 (468)
T ss_pred CCceeecccccccchhhHhhhccCCCceEEEecCCeee-ecCCCccHHHHHHHH
Confidence 47899999999999999999999999999999999765 467889999988754
No 106
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.47 E-value=0.00077 Score=55.79 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHH
Q 037669 14 LEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 14 l~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~ 82 (98)
.+.|.+.+=.. .|.+.+-.||..++||++++|+||++|++++ ||+.+ ..|..+.+++.+.+..
T Consensus 134 ~v~~~~~~a~~--~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 134 VVQALNLMAVL--NPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEEILAKLDT 196 (517)
T ss_pred HHHHHHHHHHh--CCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHHHHhc
Confidence 33444444333 3579999999999999999999999999965 88765 5599999988888865
No 107
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.45 E-value=0.002 Score=48.57 Aligned_cols=55 Identities=4% Similarity=-0.035 Sum_probs=47.1
Q ss_pred CeEEEEeCCCC-------------HhHHHHcCC--CCCCeEEEE-eCCEEe-EeeecccCHHHHHHHHHHHh
Q 037669 30 PRAVKIDINIE-------------RDLAYALKV--KECPQILFL-LGNRIL-YREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 30 vkvvKVDVDen-------------peLA~~y~V--~SIPTLi~F-KnGe~v-~r~~G~~~keeL~~~L~~~~ 84 (98)
+.|+-|++|+. ..++.+||+ .++||.+++ +||+++ ....|.++.++|++.|+.++
T Consensus 100 ~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll 171 (181)
T PRK13728 100 FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTVL 171 (181)
T ss_pred CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHHH
Confidence 88888888855 237789995 699999999 999997 47999999999999998876
No 108
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.42 E-value=0.0011 Score=55.19 Aligned_cols=76 Identities=24% Similarity=0.224 Sum_probs=59.2
Q ss_pred hhhHHhHH-HHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 5 TKNWKTLK-ELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 5 ~~~~~~~~-el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
++.||.-. =||=|-|++... .+.|+-||..++..||+++|+.-.+|+-+||+|+++.=. |.++++.|.++|-.+
T Consensus 69 qkq~~m~E~~LELaAQVlE~~----gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~~IEyd-G~~saDtLVeFl~dl 143 (383)
T PF01216_consen 69 QKQFQMTELVLELAAQVLEDK----GIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDGEVIEYD-GERSADTLVEFLLDL 143 (383)
T ss_dssp HHHHHHHHHHHHHHHHHCGGC----TEEEEEEETTTTHHHHHHHT--STTEEEEEETTEEEEE--S--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccc----CcceEEeccHHHHHHHHhcCccccCcEEEEECCcEEEec-CccCHHHHHHHHHHh
Confidence 45554333 467778888533 599999999999999999999999999999999999866 999999999999776
Q ss_pred hh
Q 037669 84 YY 85 (98)
Q Consensus 84 ~~ 85 (98)
+-
T Consensus 144 ~e 145 (383)
T PF01216_consen 144 LE 145 (383)
T ss_dssp HS
T ss_pred cc
Confidence 53
No 109
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.42 E-value=0.00074 Score=40.58 Aligned_cols=56 Identities=16% Similarity=0.313 Sum_probs=49.4
Q ss_pred CCeEEEEeCC-CCHhHHHHcC--CCCCCeEEEEeCCEEeEeeec--ccCHHHHHHHHHHHh
Q 037669 29 PPRAVKIDIN-IERDLAYALK--VKECPQILFLLGNRILYREKE--FRTADELVQMIAHFY 84 (98)
Q Consensus 29 ~vkvvKVDVD-enpeLA~~y~--V~SIPTLi~FKnGe~v~r~~G--~~~keeL~~~L~~~~ 84 (98)
.+.++.+|+. .+++++..|+ +..+|+++++.+|+.+.+..| ..+...+........
T Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (127)
T COG0526 64 DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVLPKEALIDALGELL 124 (127)
T ss_pred CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccCCHHHHHHHhcchh
Confidence 5899999997 8999999999 999999999999999888888 788888877665543
No 110
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.41 E-value=0.0022 Score=44.49 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=53.0
Q ss_pred HhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCC--CCCeEEEEe--CCEEeEeeecccCHHHHHHHHHH
Q 037669 9 KTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVK--ECPQILFLL--GNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 9 ~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~--SIPTLi~FK--nGe~v~r~~G~~~keeL~~~L~~ 82 (98)
..++.|+++...+ +-.+.|+-+|.+..++++..||+. .+|++++++ +|+..+...|.++.+.|.++|+.
T Consensus 112 ~~~~~l~~~a~~~-----~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 112 AFKKELQDIAKKF-----KGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp HHHHHHHHHHHCT-----TTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 3444444444333 334999999999999999999999 999999998 67755555899999999998863
No 111
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.36 E-value=0.00034 Score=47.64 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=35.8
Q ss_pred CCCHhHHHHcCCC---------CCCeEEEE-eCCEEeEeeecccC--HHHHHHHH
Q 037669 38 NIERDLAYALKVK---------ECPQILFL-LGNRILYREKEFRT--ADELVQMI 80 (98)
Q Consensus 38 DenpeLA~~y~V~---------SIPTLi~F-KnGe~v~r~~G~~~--keeL~~~L 80 (98)
|.+.+++.+|++. ++|+++++ +||+++++..|..+ ..++++.|
T Consensus 92 D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~~l 146 (146)
T PF08534_consen 92 DPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEAVL 146 (146)
T ss_dssp ETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHHHH
T ss_pred chHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhhcC
Confidence 4677899999998 99997665 99999999999999 55666544
No 112
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.33 E-value=0.00054 Score=51.50 Aligned_cols=46 Identities=7% Similarity=0.164 Sum_probs=38.5
Q ss_pred EeCCCCHhHHHHcCCCCCCeE-EEE-eCCEEeEeeecccCHHHHHHHH
Q 037669 35 IDINIERDLAYALKVKECPQI-LFL-LGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 35 VDVDenpeLA~~y~V~SIPTL-i~F-KnGe~v~r~~G~~~keeL~~~L 80 (98)
+=+|.+..++.+|||.++|+. +++ ++|+++++..|.++.+++++.+
T Consensus 129 vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 129 VVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred EEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 445567789999999999777 455 9999999999999999988744
No 113
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00016 Score=57.41 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=40.0
Q ss_pred hcCCCCCeEEEEeCCCCHhHHHHcCCC------CCCeEEEEeCCEEeEeeec
Q 037669 24 AKDRLPPRAVKIDINIERDLAYALKVK------ECPQILFLLGNRILYREKE 69 (98)
Q Consensus 24 ~~~~~~vkvvKVDVDenpeLA~~y~V~------SIPTLi~FKnGe~v~r~~G 69 (98)
|+ .+-++|+||||..-|+.|++|+|. -.||+++|++|+++.|---
T Consensus 173 yn-~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~~RrP~ 223 (265)
T KOG0914|consen 173 YN-NNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEVSRRPD 223 (265)
T ss_pred hC-CCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhhhcCcc
Confidence 43 677999999999999999999996 5899999999999988644
No 114
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.29 E-value=0.0021 Score=41.29 Aligned_cols=55 Identities=13% Similarity=0.034 Sum_probs=42.0
Q ss_pred CCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEe--CCEEeEeeecccCHHHHHHHHH
Q 037669 26 DRLPPRAVKIDINIERDLAYALKVKECPQILFLL--GNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 26 ~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FK--nGe~v~r~~G~~~keeL~~~L~ 81 (98)
...++.+-.|||+++++|.++|+. .||-|.+=. +.......-+..++++|.++|+
T Consensus 25 ~~~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 25 AEFPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp TTSTCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHHHH
T ss_pred hhcCceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHHhC
Confidence 345599999999999999999996 799865533 1122566778899999999885
No 115
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.28 E-value=0.0013 Score=44.24 Aligned_cols=34 Identities=6% Similarity=-0.107 Sum_probs=30.7
Q ss_pred CCCCHhHHHHcCCCCCCeEEEE-eCCEEeEeeecc
Q 037669 37 INIERDLAYALKVKECPQILFL-LGNRILYREKEF 70 (98)
Q Consensus 37 VDenpeLA~~y~V~SIPTLi~F-KnGe~v~r~~G~ 70 (98)
.|.+.+++.+|+|.++|+.+++ ++|+++++..|.
T Consensus 91 ~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 91 NDNDYATWRAYGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred ECCchHHHHHhCCCcCCeEEEECCCCcEEEEEecC
Confidence 3677889999999999999999 799999999984
No 116
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.25 E-value=0.0038 Score=43.28 Aligned_cols=71 Identities=18% Similarity=0.083 Sum_probs=57.0
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEE-eEeeecc-cCHHHHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRI-LYREKEF-RTADELVQMIAHF 83 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~-v~r~~G~-~~keeL~~~L~~~ 83 (98)
.+-...++++++.+.+... +.|+-++ +++++.+++|.. |++++||+|.. .....|- .+.++|.++|...
T Consensus 4 ~~~~~~~~f~~~A~~~~~~-----~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 4 KDSELFEIFEEAAEKLKGD-----YQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp TTSHHHHHHHHHHHHHTTT-----SEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhCcCC-----cEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 3455677888888888744 8899888 888999999999 99999999543 5677776 8999999999876
Q ss_pred hh
Q 037669 84 YY 85 (98)
Q Consensus 84 ~~ 85 (98)
-+
T Consensus 75 ~~ 76 (184)
T PF13848_consen 75 SF 76 (184)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 117
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.23 E-value=0.0036 Score=41.94 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=39.2
Q ss_pred CCCCHhHHHHcCCCCC---------CeEEEEe-CCEEeEeeecccCHHHHHHHHH
Q 037669 37 INIERDLAYALKVKEC---------PQILFLL-GNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 37 VDenpeLA~~y~V~SI---------PTLi~FK-nGe~v~r~~G~~~keeL~~~L~ 81 (98)
.|.+..++.+|||... |+.+++. +|+++++..|..+.+.+.+.|+
T Consensus 86 ~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~~ 140 (140)
T cd03017 86 SDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVLE 140 (140)
T ss_pred ECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHhC
Confidence 3667789999999998 8999994 8999999999999999988763
No 118
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.21 E-value=0.0025 Score=37.62 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=32.8
Q ss_pred CeEEEEeCCCCHhHHHHc----CCCCCCeEEEEeCCEEeEeeecccCHHHHHHH
Q 037669 30 PRAVKIDINIERDLAYAL----KVKECPQILFLLGNRILYREKEFRTADELVQM 79 (98)
Q Consensus 30 vkvvKVDVDenpeLA~~y----~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~ 79 (98)
+.+..+|+|.+++.+++| ++.++|++++ +| ....|+ +.++|.++
T Consensus 25 i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~-~~~~l~~~ 72 (73)
T cd02976 25 IPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGF-RPDKLRAL 72 (73)
T ss_pred CCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecC-CHHHHHhh
Confidence 788899999998877776 7999999976 55 355665 44566654
No 119
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.14 E-value=0.0045 Score=39.20 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=19.3
Q ss_pred CHhHHHHcCCCCCCeEEEE-eCCEE
Q 037669 40 ERDLAYALKVKECPQILFL-LGNRI 63 (98)
Q Consensus 40 npeLA~~y~V~SIPTLi~F-KnGe~ 63 (98)
+.+|...|+|+++||++++ +||++
T Consensus 71 ~~~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 71 NSELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred HHHHHHHCCCCcCCEEEEECCCCCC
Confidence 4568999999999999999 66764
No 120
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.0057 Score=45.08 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=61.1
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeec----------ccCHHHH
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKE----------FRTADEL 76 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G----------~~~keeL 76 (98)
|-+.-.=|.+-.+..=.. +.++=||+|+-|++.+-|++.+.||+++|=|++-..--.| +-.|+++
T Consensus 38 C~~mD~~L~~i~~~vsnf-----a~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~ 112 (142)
T KOG3414|consen 38 CMKMDELLSSIAEDVSNF-----AVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMKIDLGTGDNNKINFAFEDKQEF 112 (142)
T ss_pred HhhHHHHHHHHHHHHhhc-----eEEEEEecchhhhhhhhhcccCCceEEEEEcCceEEEeeCCCCCceEEEEeccHHHH
Confidence 334334455555555444 6899999999999999999999999999988887654333 5678999
Q ss_pred HHHHHHHhhcCCC
Q 037669 77 VQMIAHFYYKARR 89 (98)
Q Consensus 77 ~~~L~~~~~~~~~ 89 (98)
.+.++..|-||++
T Consensus 113 Idiie~iyRga~K 125 (142)
T KOG3414|consen 113 IDIIETIYRGARK 125 (142)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999999875
No 121
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.12 E-value=0.00051 Score=48.28 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=36.8
Q ss_pred eCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHH
Q 037669 36 DINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 36 DVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~ 81 (98)
-+.++.+.|.++||.++||+++ ||+ +...|..+-++|.+.|+
T Consensus 152 ~~~~~~~~a~~~gv~GvP~~vv--~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 152 ALEEDTAEARQLGVFGVPTFVV--NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHHHHHHTTCSSSSEEEE--TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCcccCEEEE--CCE--EEEECCCCHHHHHHHhC
Confidence 3556788899999999999999 888 89999999999998874
No 122
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.10 E-value=0.0037 Score=51.90 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=45.2
Q ss_pred CCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 28 LPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 28 ~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
|.+..-.||..+.|+++.+|+||++|++++ ||+.+ ..|..+.+++.+.+...
T Consensus 147 p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 147 PNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAELLEKLEET 198 (515)
T ss_pred CCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHHHHhhc
Confidence 568888899999999999999999999976 88765 55999999998887654
No 123
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.98 E-value=0.013 Score=40.36 Aligned_cols=45 Identities=11% Similarity=0.095 Sum_probs=37.1
Q ss_pred CCCHhHHHHcCCCCC------------CeEEEE-eCCEEeEeeecccCHHHHHHHHHH
Q 037669 38 NIERDLAYALKVKEC------------PQILFL-LGNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 38 DenpeLA~~y~V~SI------------PTLi~F-KnGe~v~r~~G~~~keeL~~~L~~ 82 (98)
|.+.+++.+|||..+ |+.+++ +||+++++..|+.+.+.+.+.|+.
T Consensus 94 D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~~ 151 (154)
T PRK09437 94 DEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLDY 151 (154)
T ss_pred CCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHHH
Confidence 567889999999865 666677 799999999999999887776654
No 124
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.95 E-value=0.0068 Score=43.85 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=23.0
Q ss_pred hHHHHcCCCCCCeEEEE-eCCEEeEe
Q 037669 42 DLAYALKVKECPQILFL-LGNRILYR 66 (98)
Q Consensus 42 eLA~~y~V~SIPTLi~F-KnGe~v~r 66 (98)
.++.+|+|.+|||++++ ++|+++.+
T Consensus 103 ~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 103 ELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHcCCCCCCEEEEECCCCcEEee
Confidence 68899999999999999 59999987
No 125
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=96.85 E-value=0.0015 Score=43.10 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=35.5
Q ss_pred hhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEE
Q 037669 5 TKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQIL 56 (98)
Q Consensus 5 ~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi 56 (98)
..+-.+...|.+ .|.++. .-+..+=-|||.++|+||+.++|..+|||+
T Consensus 13 p~S~~ai~nl~~---i~e~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 13 PKSERALQNLKR---ILEELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLV 60 (72)
T ss_pred chHHHHHHHHHH---HHHHhc-CCcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence 334444444444 455542 446888889999999999999999999986
No 126
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.83 E-value=0.014 Score=37.19 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=44.3
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCH----hHHHHcC--CCCCCeEEEEeCCEEeEeeecccCHHHHHHHH
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIER----DLAYALK--VKECPQILFLLGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenp----eLA~~y~--V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L 80 (98)
|.++++-|+.+.+. ...+.+..+|+++++ ++.+.++ ++++|+++ .||+.+. .-++|.+++
T Consensus 14 C~~a~~~L~~l~~~------~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig------g~~~~~~~~ 79 (85)
T PRK11200 14 CVRAKELAEKLSEE------RDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG------GCTDFEAYV 79 (85)
T ss_pred HHHHHHHHHhhccc------ccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc------CHHHHHHHH
Confidence 45555555554432 135889999999864 6777666 69999974 5998753 458888888
Q ss_pred HHHh
Q 037669 81 AHFY 84 (98)
Q Consensus 81 ~~~~ 84 (98)
+.+|
T Consensus 80 ~~~~ 83 (85)
T PRK11200 80 KENL 83 (85)
T ss_pred HHhc
Confidence 7765
No 127
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.69 E-value=0.019 Score=40.19 Aligned_cols=65 Identities=25% Similarity=0.432 Sum_probs=42.5
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHh----HHHHcCCC-CCCeEEEEeCCEEeEeeec-ccCHHHH
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERD----LAYALKVK-ECPQILFLLGNRILYREKE-FRTADEL 76 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpe----LA~~y~V~-SIPTLi~FKnGe~v~r~~G-~~~keeL 76 (98)
+-+++.|+++ +|...+. .+.++-+||-+.++ +|+.|||+ -=|.+++||||+.+|.... -++.++|
T Consensus 34 S~~a~~~~e~----~~~~~~~-~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 34 SAMALREFEK----FWEESPD-EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp HHHHHHHHHH----HHHHHT-----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred hHHHHHHHHH----HhhcCCc-cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEEECccccCCHHhc
Confidence 3456666665 4544211 18999999999876 57889998 7899999999999998764 4555554
No 128
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.67 E-value=0.0018 Score=43.33 Aligned_cols=40 Identities=30% Similarity=0.392 Sum_probs=33.0
Q ss_pred CCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHH
Q 037669 37 INIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 37 VDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~ 81 (98)
+..+.+++.++||.++||+++ ||+ ...|..+.+.|.+.|+
T Consensus 115 ~~~~~~~~~~~gi~gtPt~~v--~g~---~~~G~~~~~~l~~~i~ 154 (154)
T cd03023 115 IDKNRQLARALGITGTPAFII--GDT---VIPGAVPADTLKEAID 154 (154)
T ss_pred HHHHHHHHHHcCCCcCCeEEE--CCE---EecCCCCHHHHHHHhC
Confidence 444568899999999999877 686 5689999999998773
No 129
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.67 E-value=0.002 Score=43.91 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=35.4
Q ss_pred eCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHH
Q 037669 36 DINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 36 DVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~ 82 (98)
.+....+++.++||.+.||+++ ||+.+ .|..+.++|.+.|+.
T Consensus 121 ~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 121 QLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 3455667899999999999999 99995 889999999999874
No 130
>PLN02412 probable glutathione peroxidase
Probab=96.64 E-value=0.0071 Score=43.38 Aligned_cols=37 Identities=8% Similarity=0.035 Sum_probs=33.0
Q ss_pred CCCCCeEEEE-eCCEEeEeeecccCHHHHHHHHHHHhh
Q 037669 49 VKECPQILFL-LGNRILYREKEFRTADELVQMIAHFYY 85 (98)
Q Consensus 49 V~SIPTLi~F-KnGe~v~r~~G~~~keeL~~~L~~~~~ 85 (98)
|...||.+++ ++|+++++..|.++.++|+..|+.++-
T Consensus 128 v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 128 IKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred cCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 6667998888 999999999999999999999988753
No 131
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=96.63 E-value=0.0022 Score=45.67 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=36.3
Q ss_pred EEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHH
Q 037669 34 KIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 34 KVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~ 81 (98)
+=-++++.+.|.+.||.++||+++ ||+ ....|..+.+.+.+.|+
T Consensus 158 ~~~~~~~~~~a~~~gv~G~Pt~vv--~g~--~~~~G~~~~~~~~~~i~ 201 (201)
T cd03024 158 ADEVRADEARARQLGISGVPFFVF--NGK--YAVSGAQPPEVFLQALR 201 (201)
T ss_pred chHHHHHHHHHHHCCCCcCCEEEE--CCe--EeecCCCCHHHHHHHhC
Confidence 344566788899999999999999 776 45799999999998763
No 132
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.63 E-value=0.015 Score=39.75 Aligned_cols=78 Identities=13% Similarity=-0.039 Sum_probs=62.5
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCC--CCeEEEEeCCE-EeEe-eecccCHHHHHHHHHH
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKE--CPQILFLLGNR-ILYR-EKEFRTADELVQMIAH 82 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~S--IPTLi~FKnGe-~v~r-~~G~~~keeL~~~L~~ 82 (98)
-...+..+.++-..+-.++ ..+.|+-+|.|+....++.||+.. .|++.+..... -.+. ..+-.+.+.|.++++.
T Consensus 29 ~~~~~~~~~~vAk~~~~~k--gki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~ 106 (111)
T cd03072 29 LESLKEFKQAVARQLISEK--GAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLD 106 (111)
T ss_pred HHHHHHHHHHHHHHHHhcC--ceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHH
Confidence 3456667777777644443 339999999999999999999997 99999997644 3666 7789999999999999
Q ss_pred Hhhc
Q 037669 83 FYYK 86 (98)
Q Consensus 83 ~~~~ 86 (98)
|+-|
T Consensus 107 ~~~G 110 (111)
T cd03072 107 LHSG 110 (111)
T ss_pred HhcC
Confidence 9865
No 133
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.56 E-value=0.017 Score=48.53 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=60.2
Q ss_pred CeEEEEeCCCCHhHHHHcCCCCCCeEEEEe-CCEEe-EeeecccCHHHHHHHHHHHhhcCCCCCCCCcC
Q 037669 30 PRAVKIDINIERDLAYALKVKECPQILFLL-GNRIL-YREKEFRTADELVQMIAHFYYKARRPSWIDKT 96 (98)
Q Consensus 30 vkvvKVDVDenpeLA~~y~V~SIPTLi~FK-nGe~v-~r~~G~~~keeL~~~L~~~~~~~~~p~~~~~~ 96 (98)
+++...|.+++++++++|+|.-+|++.+++ +|+-. -|..|.=.-+|+-.+|..++.-+.+++-|++.
T Consensus 398 i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~l~~~ 466 (555)
T TIGR03143 398 LNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHELNSFILALYNAAGPGQPLGEE 466 (555)
T ss_pred EEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHhHHHHHHHHHHhcCCCCCCCHH
Confidence 777788999999999999999999999994 77644 78899999999999999999999999999864
No 134
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.56 E-value=0.014 Score=34.77 Aligned_cols=33 Identities=12% Similarity=0.320 Sum_probs=26.4
Q ss_pred CeEEEEeCCCCHhHHHH----cCCCCCCeEEEEeCCEEe
Q 037669 30 PRAVKIDINIERDLAYA----LKVKECPQILFLLGNRIL 64 (98)
Q Consensus 30 vkvvKVDVDenpeLA~~----y~V~SIPTLi~FKnGe~v 64 (98)
+.+--+|++++++..++ +|.+++|++++ ||+.+
T Consensus 24 i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 24 IPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred CeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 78888888888665555 49999999987 88764
No 135
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.51 E-value=0.012 Score=36.53 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=38.6
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHc---CCCCCCeEEEEeCCEEeEeeecccCHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYAL---KVKECPQILFLLGNRILYREKEFRTADELVQ 78 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y---~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~ 78 (98)
.|.+++.-|++ .+ +.+-.+||+++++.+..+ |..++|++++ ||+. ...|+. +++|.+
T Consensus 11 ~C~~ak~~L~~-------~~----i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~--~~~G~~-~~~~~~ 70 (72)
T TIGR02194 11 QCKMTKKALEE-------HG----IAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL--SWSGFR-PDKLKA 70 (72)
T ss_pred HHHHHHHHHHH-------CC----CceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc--EEeccC-HHHHHh
Confidence 45555555542 33 788889999999888877 8889999744 6642 456654 444443
No 136
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.47 E-value=0.0041 Score=48.58 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=42.2
Q ss_pred CCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHhhcCCCCCC
Q 037669 39 IERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFYYKARRPSW 92 (98)
Q Consensus 39 enpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~~~~~p~~ 92 (98)
++..-|+++||.++||++| ...+.+.|..+.+.+++.|+...-+..+|+-
T Consensus 172 ~d~~~A~e~gI~gVP~fv~----d~~~~V~Gaq~~~v~~~al~~~~~~~~~~~~ 221 (225)
T COG2761 172 QDEAAAQEMGIRGVPTFVF----DGKYAVSGAQPYDVLEDALRQLLAEKAEEHK 221 (225)
T ss_pred HHHHHHHHCCCccCceEEE----cCcEeecCCCCHHHHHHHHHHHHhcccccCC
Confidence 3456799999999999999 4557789999999999999999988666543
No 137
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=96.39 E-value=0.014 Score=41.92 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCE-----------EeEeeecccCHHHHHHH
Q 037669 11 LKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNR-----------ILYREKEFRTADELVQM 79 (98)
Q Consensus 11 ~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe-----------~v~r~~G~~~keeL~~~ 79 (98)
.++..++++.++...+. .++.-||.|=.+|+|..+|++++.++|. ...++.|=+|=+.-++.
T Consensus 38 ~~~T~~~i~~L~~~~~~-------~~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ 110 (130)
T TIGR02742 38 FKATATRIQSLIKDGGK-------SGVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEK 110 (130)
T ss_pred HHHHHHHHHHHHhcCCC-------CcEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHH
Confidence 35778888888865422 6777899999999999999999999995 57889998887666666
Q ss_pred HH
Q 037669 80 IA 81 (98)
Q Consensus 80 L~ 81 (98)
+.
T Consensus 111 ia 112 (130)
T TIGR02742 111 MA 112 (130)
T ss_pred HH
Confidence 65
No 138
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.34 E-value=0.0069 Score=52.82 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=50.9
Q ss_pred CCCCeEEEEeCCCC----HhHHHHcCCCCCCeEEEEe-CCEEeEeeecccCHHHHHHHHHHH
Q 037669 27 RLPPRAVKIDINIE----RDLAYALKVKECPQILFLL-GNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 27 ~~~vkvvKVDVDen----peLA~~y~V~SIPTLi~FK-nGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
...++..++|+.+| .++=++||+.++||+++|. +|++..-++|+++++.+++++++.
T Consensus 506 ~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 506 LQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred cCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 56689999999874 5677899999999999997 999999999999999999999764
No 139
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.34 E-value=0.026 Score=34.66 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=31.0
Q ss_pred CeEEEEeCCCCHh-----HHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHH
Q 037669 30 PRAVKIDINIERD-----LAYALKVKECPQILFLLGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 30 vkvvKVDVDenpe-----LA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L 80 (98)
..++.||.+++++ +.+.+|+.++|++ |-||+.+. | .+++.++.
T Consensus 28 ~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~ig---g---~~~~~~~~ 75 (84)
T TIGR02180 28 YEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFIG---G---CSDLLALY 75 (84)
T ss_pred CEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc---C---HHHHHHHH
Confidence 7788888876653 7888899999997 56887643 2 35555544
No 140
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.31 E-value=0.021 Score=43.32 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=43.5
Q ss_pred CCeEEEEeCC-----------CCHhHHHHcCCCCCCeEEEEeCC--EEeEeeecccCHHHHHHHH
Q 037669 29 PPRAVKIDIN-----------IERDLAYALKVKECPQILFLLGN--RILYREKEFRTADELVQMI 80 (98)
Q Consensus 29 ~vkvvKVDVD-----------enpeLA~~y~V~SIPTLi~FKnG--e~v~r~~G~~~keeL~~~L 80 (98)
.+.+.-|++| .++++|+++||..+|++++..-+ +..-=..|+++.++|.+-|
T Consensus 150 g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 150 GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 4889999998 56999999999999999999543 5666667999999998754
No 141
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.31 E-value=0.0041 Score=47.99 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=37.2
Q ss_pred CCCCHhHHHHcCCCCCCeEEEEe-CCEEeEeeecccCHHHHHHHHH
Q 037669 37 INIERDLAYALKVKECPQILFLL-GNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 37 VDenpeLA~~y~V~SIPTLi~FK-nGe~v~r~~G~~~keeL~~~L~ 81 (98)
|++|.+|++++||++.||+++-. +| .+..+.|+.+.++|.+.|.
T Consensus 205 i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 205 LADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 56788899999999999998875 35 4557889999999999875
No 142
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.14 E-value=0.019 Score=40.79 Aligned_cols=48 Identities=8% Similarity=0.051 Sum_probs=39.6
Q ss_pred CCCCHhHHHHcCCC------CCCeEEEE-eCCEEeEeeeccc----CHHHHHHHHHHHh
Q 037669 37 INIERDLAYALKVK------ECPQILFL-LGNRILYREKEFR----TADELVQMIAHFY 84 (98)
Q Consensus 37 VDenpeLA~~y~V~------SIPTLi~F-KnGe~v~r~~G~~----~keeL~~~L~~~~ 84 (98)
.|.+.+++.+|||. ++|+.+++ ++|+++++.+|.. +.+++++.|+..-
T Consensus 99 ~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~ 157 (173)
T cd03015 99 ADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQ 157 (173)
T ss_pred ECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 46777899999997 78899988 5999999998765 4678888888763
No 143
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.06 E-value=0.025 Score=38.78 Aligned_cols=73 Identities=11% Similarity=-0.018 Sum_probs=56.4
Q ss_pred HHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCC----CCeEEEEeCCEEeEeeeccc-CHHHHHHHHHH
Q 037669 8 WKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKE----CPQILFLLGNRILYREKEFR-TADELVQMIAH 82 (98)
Q Consensus 8 ~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~S----IPTLi~FKnGe~v~r~~G~~-~keeL~~~L~~ 82 (98)
...+..+.++.+.+=. ..+.|+=+|.++....++.||+.+ .|++.++......++..+-. +.+.|.++++.
T Consensus 34 ~~~~~~~~~vAk~fk~----gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 34 NYWRNRVLKVAKDFPD----RKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLED 109 (111)
T ss_pred HHHHHHHHHHHHHCcC----CeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHH
Confidence 3455666666655431 239999999999988999999985 99999987433678777878 99999999988
Q ss_pred Hh
Q 037669 83 FY 84 (98)
Q Consensus 83 ~~ 84 (98)
|+
T Consensus 110 f~ 111 (111)
T cd03073 110 FF 111 (111)
T ss_pred hC
Confidence 73
No 144
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.06 E-value=0.053 Score=33.24 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=31.2
Q ss_pred CeEEEEeCCCCHh---HHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHH
Q 037669 30 PRAVKIDINIERD---LAYALKVKECPQILFLLGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 30 vkvvKVDVDenpe---LA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L 80 (98)
+.+-.+|++++++ +....|.+++|.+ |-||+.+. ..++|.++|
T Consensus 26 i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~ig------g~~~l~~~l 71 (72)
T cd03029 26 ISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELIG------GSDDLEKYF 71 (72)
T ss_pred CCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEEe------CHHHHHHHh
Confidence 7778888888764 3344699999997 67888653 357777765
No 145
>PRK13190 putative peroxiredoxin; Provisional
Probab=96.01 E-value=0.028 Score=41.69 Aligned_cols=49 Identities=12% Similarity=0.263 Sum_probs=42.3
Q ss_pred CCCCHhHHHHcCCC------CCCeEEEE-eCCEEeEee----ecccCHHHHHHHHHHHhh
Q 037669 37 INIERDLAYALKVK------ECPQILFL-LGNRILYRE----KEFRTADELVQMIAHFYY 85 (98)
Q Consensus 37 VDenpeLA~~y~V~------SIPTLi~F-KnGe~v~r~----~G~~~keeL~~~L~~~~~ 85 (98)
.|.+.+++.+|||. ++|+.+++ ++|++.+.. .+-++-+++++.|+.+-+
T Consensus 96 ~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 96 ADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred ECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 36678999999995 69999999 699999887 556899999999999887
No 146
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=95.99 E-value=0.019 Score=41.91 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=34.4
Q ss_pred CHhHHHHcCCCCCCeEEEE-eCCEEeEeeecccCHHHHHHHHHHH
Q 037669 40 ERDLAYALKVKECPQILFL-LGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 40 npeLA~~y~V~SIPTLi~F-KnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
+.+++.+|||.++|+.+++ ++|+++++. ..-+.+++++.|+..
T Consensus 135 ~~~i~~~y~v~~~P~~~lID~~G~I~~~g-~~~~~~~le~ll~~l 178 (189)
T TIGR02661 135 SAEIGMAFQVGKIPYGVLLDQDGKIRAKG-LTNTREHLESLLEAD 178 (189)
T ss_pred hhHHHHhccCCccceEEEECCCCeEEEcc-CCCCHHHHHHHHHHH
Confidence 5789999999999987776 799999872 245778888888754
No 147
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=95.95 E-value=0.014 Score=45.26 Aligned_cols=35 Identities=9% Similarity=0.056 Sum_probs=31.2
Q ss_pred CCCCeEEEE-eCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 50 KECPQILFL-LGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 50 ~SIPTLi~F-KnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
+.+||.+++ ++|+++++..|.++.++|++.|+.++
T Consensus 199 ~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 199 KWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred ccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 446888888 99999999999999999999999876
No 148
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.95 E-value=0.0031 Score=46.06 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=19.0
Q ss_pred CCCCHhHHHHcCCCCCCeEEEEe--CCEEeEeeecccCHHHHHH
Q 037669 37 INIERDLAYALKVKECPQILFLL--GNRILYREKEFRTADELVQ 78 (98)
Q Consensus 37 VDenpeLA~~y~V~SIPTLi~FK--nGe~v~r~~G~~~keeL~~ 78 (98)
+.++..||.++||.+.||++||. +++.--.+.|..+.+.+++
T Consensus 133 ~~~D~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~~~ 176 (176)
T PF13743_consen 133 FQEDQQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEVYEQ 176 (176)
T ss_dssp HHHHHHHHHHTT-SSSSEEEEE----------------------
T ss_pred HHHHHHHHHHcCCCCCCEEEEEecccccccccccccccccccCC
Confidence 45678999999999999999998 6666677788888777653
No 149
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=95.95 E-value=0.0068 Score=42.61 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=30.6
Q ss_pred CCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHH
Q 037669 38 NIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 38 DenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L 80 (98)
.++.+.|.++||.++||+++ ||+.+ .|..+-+.|.+.|
T Consensus 154 ~~~~~~a~~~gi~gvPtfvv--~g~~~---~G~~~l~~~~~~l 191 (192)
T cd03022 154 RANTEEAIARGVFGVPTFVV--DGEMF---WGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHHHHcCCCcCCeEEE--CCeee---cccccHHHHHHHh
Confidence 34567889999999999999 89755 5888888877765
No 150
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=95.91 E-value=0.014 Score=41.11 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=39.7
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHc---CCCCCCeEEEE-eCCEEeEeeecccCH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYAL---KVKECPQILFL-LGNRILYREKEFRTA 73 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y---~V~SIPTLi~F-KnGe~v~r~~G~~~k 73 (98)
||=+..+=|.|..+.. |.+.+-=+-.|+++++-.+| |..+|||++++ ++|+++++.. .+|+
T Consensus 55 D~~~~vP~l~kiae~~------p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wg-erP~ 119 (129)
T PF14595_consen 55 DCARNVPVLAKIAEAN------PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWG-ERPK 119 (129)
T ss_dssp HHHHHHHHHHHHHHH-------TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEE-SS-H
T ss_pred hHHHHHHHHHHHHHhC------CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEc-CCCH
Confidence 5667777777777742 23555566778999988776 78899999999 6688888764 4554
No 151
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.87 E-value=0.057 Score=31.34 Aligned_cols=46 Identities=20% Similarity=0.129 Sum_probs=31.8
Q ss_pred HHHHHHHhhcCCCCCeEEEEeCCCCHhHH----HHcCCCCCCeEEEEeCCEEeEee
Q 037669 16 KAIQVYWSAKDRLPPRAVKIDINIERDLA----YALKVKECPQILFLLGNRILYRE 67 (98)
Q Consensus 16 k~~~~~~~~~~~~~vkvvKVDVDenpeLA----~~y~V~SIPTLi~FKnGe~v~r~ 67 (98)
+|...+.+.+ +.+..+|++.++++. +..+..++|++ |.||+.++..
T Consensus 15 ~~~~~L~~~~----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~igg~ 64 (72)
T cd02066 15 RAKRLLESLG----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIGGY 64 (72)
T ss_pred HHHHHHHHcC----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEecH
Confidence 4444455443 888899999887654 44588899977 5599877643
No 152
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=95.71 E-value=0.039 Score=38.16 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeC------------CEEeEeeecccCHHHHH
Q 037669 10 TLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLG------------NRILYREKEFRTADELV 77 (98)
Q Consensus 10 ~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKn------------Ge~v~r~~G~~~keeL~ 77 (98)
.+++..++++.+....+.. .++.-||.+=++|+|..+||+++-++ .+..++..|=++-+.-+
T Consensus 36 ~~~~t~~~~~~l~~~~~~~------~~v~IdP~~F~~y~I~~VPa~V~~~~~~~~~~~~~~~~~~~~~~~~Gdvsl~~aL 109 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC------PGVQIDPRLFRQYNITAVPAFVVVKDRVCVCLSCGCCSPEDYDVVYGDVSLDYAL 109 (113)
T ss_pred CHHHHHHHHHHHhhccCCC------cceeEChhHHhhCCceEcCEEEEEcCcccccccCCcCCCCcceEEEccccHHHHH
Confidence 4566778888888554222 67788999999999999999999998 24556777766655444
Q ss_pred HH
Q 037669 78 QM 79 (98)
Q Consensus 78 ~~ 79 (98)
+.
T Consensus 110 e~ 111 (113)
T PF09673_consen 110 EK 111 (113)
T ss_pred Hh
Confidence 43
No 153
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=95.69 E-value=0.03 Score=40.66 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=44.5
Q ss_pred hcCCCCCeEEEEeCC-----CCHhHHHHcCC--CCCCeEEEEe-CCEEeEee--ecccCHHHHHHHHHHH
Q 037669 24 AKDRLPPRAVKIDIN-----IERDLAYALKV--KECPQILFLL-GNRILYRE--KEFRTADELVQMIAHF 83 (98)
Q Consensus 24 ~~~~~~vkvvKVDVD-----enpeLA~~y~V--~SIPTLi~FK-nGe~v~r~--~G~~~keeL~~~L~~~ 83 (98)
++.-..+-+..|-|. +|.+||++||| ...|.+.+|+ +++.--+. .|-.+.+.|..+++..
T Consensus 49 ~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 49 SASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp HCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred hcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 444666778888775 59999999999 6899999998 55666666 8999999999999875
No 154
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.68 E-value=0.068 Score=33.75 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=30.9
Q ss_pred CeEEEEeCCCC---HhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHH
Q 037669 30 PRAVKIDINIE---RDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 30 vkvvKVDVDen---peLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L 80 (98)
+.+-.+|++++ .++...+|..++|++++ ||+.+ -|+ ++|.++|
T Consensus 33 i~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i---gG~---~~l~~~l 78 (79)
T TIGR02190 33 YDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI---GGS---DELEAYL 78 (79)
T ss_pred CCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE---cCH---HHHHHHh
Confidence 77778898887 55666679999999954 88864 333 6666554
No 155
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=95.65 E-value=0.02 Score=39.05 Aligned_cols=62 Identities=11% Similarity=-0.028 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCH
Q 037669 10 TLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTA 73 (98)
Q Consensus 10 ~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~k 73 (98)
+...++...+.|.++. .....+==|||-++|+||+.++|..+|||+= ..=..+-|++|=+|-
T Consensus 17 S~~ai~nl~~i~e~~l-~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK-~~P~P~rriiGdls~ 78 (87)
T TIGR02654 17 SVRALKTLKNILETEF-QGVYALKVIDVLKNPQLAEEDKILATPTLSK-ILPPPVRKIIGDLSD 78 (87)
T ss_pred HHHHHHHHHHHHHHhc-CCceEEEEEEcccCHhHHhHCCEEEecHHhh-cCCCCcceeeccccc
Confidence 3444555556666663 3347777899999999999999999999653 345667788886654
No 156
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=95.63 E-value=0.017 Score=40.31 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=22.1
Q ss_pred eEEEE-eCCEEeEeeecccCHHHHHHH
Q 037669 54 QILFL-LGNRILYREKEFRTADELVQM 79 (98)
Q Consensus 54 TLi~F-KnGe~v~r~~G~~~keeL~~~ 79 (98)
|.+++ ++|+++++..|.++.++|++.
T Consensus 125 ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 125 TKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred EEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 45555 999999999999999998764
No 157
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.024 Score=46.70 Aligned_cols=66 Identities=15% Similarity=0.262 Sum_probs=50.3
Q ss_pred CCeEEEEeCCCCHhHHHHcCCCCCCeEEEE--------eCCEEeEeeecccCHHHHHHHHHHHhhc----CCCCCCCCc
Q 037669 29 PPRAVKIDINIERDLAYALKVKECPQILFL--------LGNRILYREKEFRTADELVQMIAHFYYK----ARRPSWIDK 95 (98)
Q Consensus 29 ~vkvvKVDVDenpeLA~~y~V~SIPTLi~F--------KnGe~v~r~~G~~~keeL~~~L~~~~~~----~~~p~~~~~ 95 (98)
.+-|++||.||.|++-+++++.++|+|++| +-+..-....|+- .|++.++++.+--= --|||-.+.
T Consensus 104 klFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~-Ae~iaqfv~~~tkv~v~si~rPp~~s~ 181 (331)
T KOG2603|consen 104 KLFFCMVDYDESPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFE-AEQIAQFVADRTKVNVRSIQRPPNYSK 181 (331)
T ss_pred eEEEEEEeccccHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchh-HHHHHHHHHHhhhheeeeeecCCcccc
Confidence 457999999999999999999999999999 3444444556666 88888888776322 235776655
No 158
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=95.46 E-value=0.26 Score=35.88 Aligned_cols=47 Identities=21% Similarity=0.083 Sum_probs=37.0
Q ss_pred CCHhHHHHcCCC------CCCeEEEE-eCCEEeEeeecc----cCHHHHHHHHHHHhh
Q 037669 39 IERDLAYALKVK------ECPQILFL-LGNRILYREKEF----RTADELVQMIAHFYY 85 (98)
Q Consensus 39 enpeLA~~y~V~------SIPTLi~F-KnGe~v~r~~G~----~~keeL~~~L~~~~~ 85 (98)
.+.+++.+|||. +.|+.+++ ++|++++...+. ...++|++.|+..=|
T Consensus 100 ~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~~ 157 (187)
T TIGR03137 100 PTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQY 157 (187)
T ss_pred CccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 455888999996 56988888 799999998653 467888888866655
No 159
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.41 E-value=0.15 Score=37.88 Aligned_cols=33 Identities=15% Similarity=0.011 Sum_probs=28.1
Q ss_pred eEEEEeCCEEeEeeecccCHHHHHHHHHHHhhc
Q 037669 54 QILFLLGNRILYREKEFRTADELVQMIAHFYYK 86 (98)
Q Consensus 54 TLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~~ 86 (98)
|+++=++|+++.+..|..+.++|++.|+.++-+
T Consensus 148 tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 148 KFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred EEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 455559999999999999999999999887644
No 160
>PRK09301 circadian clock protein KaiB; Provisional
Probab=95.33 E-value=0.029 Score=39.42 Aligned_cols=62 Identities=11% Similarity=-0.010 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCH
Q 037669 10 TLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTA 73 (98)
Q Consensus 10 ~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~k 73 (98)
+...++..-+.|.++. .....+=-|||-++|+||+.++|-.+|||+ =..=..+-|++|=++-
T Consensus 20 S~~ai~nL~~icE~~l-~g~y~LeVIDv~~qPelAE~~~IvATPTLI-K~~P~P~rriiGDlsd 81 (103)
T PRK09301 20 SVRALKTLKNILETEF-KGVYALKVIDVLKNPQLAEEDKILATPTLA-KILPPPVRKIIGDLSD 81 (103)
T ss_pred HHHHHHHHHHHHHHhc-CCceEEEEEEcccCHhHHhHCCeEEecHHh-hcCCCCcceeeccccc
Confidence 3444555556666663 344777789999999999999999999965 3446678888996654
No 161
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.025 Score=44.50 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=45.5
Q ss_pred CCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHH
Q 037669 28 LPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADEL 76 (98)
Q Consensus 28 ~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL 76 (98)
..+.++|++.|+.++++..+.|.++|++++|.+|+.+.|..|..+....
T Consensus 47 ~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~~ 95 (227)
T KOG0911|consen 47 KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFLV 95 (227)
T ss_pred hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHHHH
Confidence 3489999999999999999999999999999999999999999887544
No 162
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=95.22 E-value=0.0057 Score=40.94 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=37.9
Q ss_pred cchhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEE
Q 037669 3 RATKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQIL 56 (98)
Q Consensus 3 ~~~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi 56 (98)
++..+.+++.-|....+..- .-+..+=-|||-++|++|+.++|-..|||+
T Consensus 7 ~~~~s~~a~~~l~~l~~~~l----~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 7 RTPSSERAIENLRRLCEEYL----GGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp BHHHHHHHHHHHHHHHHCHC----TTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred CChHHHHHHHHHHHHHHhhC----CCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 44555666666665544443 445888889999999999999999999986
No 163
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=95.11 E-value=0.03 Score=36.28 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=21.7
Q ss_pred HhHHHHcCCCCCCeEEEE-eCCEEeEee
Q 037669 41 RDLAYALKVKECPQILFL-LGNRILYRE 67 (98)
Q Consensus 41 peLA~~y~V~SIPTLi~F-KnGe~v~r~ 67 (98)
.+++++|+|.++|+.+++ ++|+++++-
T Consensus 85 ~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 85 AELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 457888889999998888 489888763
No 164
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.05 E-value=0.027 Score=38.95 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=32.7
Q ss_pred CCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 37 INIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 37 VDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
++++.+++.++||.+.||+++ ||+.+-.-.|..+-+ ..+.|+.+.
T Consensus 129 i~~~~~~~~~~gi~gTPt~iI--nG~~~~~~~~~~~~~-~~~~~~~~~ 173 (178)
T cd03019 129 VAKAEKLAKKYKITGVPAFVV--NGKYVVNPSAIGGDD-TLQVLDELI 173 (178)
T ss_pred HHHHHHHHHHcCCCCCCeEEE--CCEEEEChhhccchh-HHHHHHHHH
Confidence 556778899999999999998 999777666654443 444444443
No 165
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.00 E-value=0.21 Score=39.49 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=47.2
Q ss_pred CCeEEEEeCCCC-----------HhHHHHcCCCCCCeEEEEe-C-CEEeEeeecccCHHHHHHHHHHHhhc
Q 037669 29 PPRAVKIDINIE-----------RDLAYALKVKECPQILFLL-G-NRILYREKEFRTADELVQMIAHFYYK 86 (98)
Q Consensus 29 ~vkvvKVDVDen-----------peLA~~y~V~SIPTLi~FK-n-Ge~v~r~~G~~~keeL~~~L~~~~~~ 86 (98)
.+.+.-|++|.. ..+|+++||..+|++++.. + |+..==..|+++.++|.+-|-...-.
T Consensus 180 gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 180 GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVLTQ 250 (256)
T ss_pred CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhc
Confidence 388999999987 5699999999999999983 3 45555567999999999888665544
No 166
>PRK10638 glutaredoxin 3; Provisional
Probab=94.92 E-value=0.12 Score=32.66 Aligned_cols=45 Identities=16% Similarity=0.080 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeCCCCHhH----HHHcCCCCCCeEEEEeCCEEeE
Q 037669 15 EKAIQVYWSAKDRLPPRAVKIDINIERDL----AYALKVKECPQILFLLGNRILY 65 (98)
Q Consensus 15 ~k~~~~~~~~~~~~~vkvvKVDVDenpeL----A~~y~V~SIPTLi~FKnGe~v~ 65 (98)
.+|.+.+.+.. +.+.-+|||++++. .+..|..++|++ |-||+.+.
T Consensus 16 ~~a~~~L~~~g----i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~ig 64 (83)
T PRK10638 16 HRAKALLNSKG----VSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHIG 64 (83)
T ss_pred HHHHHHHHHcC----CCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 35556666554 66777899888754 455588899987 55887653
No 167
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.89 E-value=0.37 Score=31.12 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=34.4
Q ss_pred CeEEEEeCCCCHhHHH---HcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 30 PRAVKIDINIERDLAY---ALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 30 vkvvKVDVDenpeLA~---~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
+.+-.+|||++++.++ ..|..++|++++ +|. ...||. .++|.+++-.+
T Consensus 26 I~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~-~~~l~~~~~~~ 76 (81)
T PRK10329 26 FDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFR-PDMINRLHPAP 76 (81)
T ss_pred CceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCC-HHHHHHHHHhh
Confidence 8899999999998554 457789999965 553 355664 56677766544
No 168
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=94.71 E-value=0.051 Score=40.11 Aligned_cols=44 Identities=7% Similarity=0.274 Sum_probs=30.7
Q ss_pred CCCHhHHHHcCCCCCCeEEEEeCCEEeEeeeccc------CHHHHHHHHHHH
Q 037669 38 NIERDLAYALKVKECPQILFLLGNRILYREKEFR------TADELVQMIAHF 83 (98)
Q Consensus 38 DenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~------~keeL~~~L~~~ 83 (98)
..+.+++.++||.++||++| ||+-+-...+.. +-+++.+.++.+
T Consensus 154 ~~~~~~a~~~gI~gtPtfiI--nGky~v~~~~~~~~~~~~~~~~~~~~i~~L 203 (207)
T PRK10954 154 AQQEKAAADLQLRGVPAMFV--NGKYMVNNQGMDTSSMDVYVQQYADVVKFL 203 (207)
T ss_pred HHHHHHHHHcCCCCCCEEEE--CCEEEEccccccccchhhhHHHHHHHHHHH
Confidence 34577899999999999999 999766555522 335555555433
No 169
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=94.61 E-value=0.56 Score=31.61 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=30.8
Q ss_pred HhHHHHcCCC----CCC--eEEEE-eCCEEeEeeeccc--C--HHHHHHHHH
Q 037669 41 RDLAYALKVK----ECP--QILFL-LGNRILYREKEFR--T--ADELVQMIA 81 (98)
Q Consensus 41 peLA~~y~V~----SIP--TLi~F-KnGe~v~r~~G~~--~--keeL~~~L~ 81 (98)
.+++..||+. ++| +.+++ +||+++++..|.. + ..++.+.|+
T Consensus 97 ~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 97 GEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred hHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 7899999998 444 76777 6999999999965 3 455555543
No 170
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.58 E-value=0.15 Score=31.52 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=25.1
Q ss_pred CeEEEEeCCCCHhHHHH----cCCCCCCeEEEEeCCEEe
Q 037669 30 PRAVKIDINIERDLAYA----LKVKECPQILFLLGNRIL 64 (98)
Q Consensus 30 vkvvKVDVDenpeLA~~----y~V~SIPTLi~FKnGe~v 64 (98)
+.+--+|++++++..++ .|.+++|++ |-||+.+
T Consensus 24 i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~i 60 (79)
T TIGR02181 24 VTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHV 60 (79)
T ss_pred CCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 67777888888766555 488999997 5588754
No 171
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=94.38 E-value=0.047 Score=43.70 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=41.0
Q ss_pred HHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeec
Q 037669 18 IQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKE 69 (98)
Q Consensus 18 ~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G 69 (98)
+-.|. +++-|-++||||-.. +-....+|....+|||+|||+|+++...+-
T Consensus 180 ~~~cL-AAeyP~vKFckikss-~~gas~~F~~n~lP~LliYkgGeLIgNFv~ 229 (273)
T KOG3171|consen 180 SLTCL-AAEYPIVKFCKIKSS-NTGASDRFSLNVLPTLLIYKGGELIGNFVS 229 (273)
T ss_pred hHHHh-hccCCceeEEEeeec-cccchhhhcccCCceEEEeeCCchhHHHHH
Confidence 44566 557999999999754 566789999999999999999999887654
No 172
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=94.32 E-value=0.52 Score=34.51 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=47.4
Q ss_pred CeEEEEeCCCCHhHHHHcCCCCCCe-EEEEeCCEEeEe---------eec-ccCHHHHHHHHHHHhhcCCCC
Q 037669 30 PRAVKIDINIERDLAYALKVKECPQ-ILFLLGNRILYR---------EKE-FRTADELVQMIAHFYYKARRP 90 (98)
Q Consensus 30 vkvvKVDVDenpeLA~~y~V~SIPT-Li~FKnGe~v~r---------~~G-~~~keeL~~~L~~~~~~~~~p 90 (98)
..++-||+|+=|++-+.|.+. .|. ++||=+|+-+.= ..| +-+|+++.+.++..|.||++=
T Consensus 53 a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iyrga~kG 123 (133)
T PF02966_consen 53 AVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIYRGARKG 123 (133)
T ss_dssp EEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEEcccchhhhcccccC-CCeEEEEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHHHHhhcC
Confidence 789999999999999999999 774 777766776543 333 445999999999999998753
No 173
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.27 E-value=0.58 Score=30.08 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=36.0
Q ss_pred CCCeEEEEeCCCCH----hHHHHcCC--CCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 28 LPPRAVKIDINIER----DLAYALKV--KECPQILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 28 ~~vkvvKVDVDenp----eLA~~y~V--~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
+.+.+..+|++.+. +|.+.+|- +++|+++ -||+.+ -.-++|.++++..|
T Consensus 28 ~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~i------gG~~dl~~~~~~~~ 82 (86)
T TIGR02183 28 ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHV------GGCTDFEQLVKENF 82 (86)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEe------cCHHHHHHHHHhcc
Confidence 35788889998644 68888884 8999994 488764 24588888877654
No 174
>PTZ00256 glutathione peroxidase; Provisional
Probab=94.20 E-value=0.099 Score=37.89 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=32.0
Q ss_pred CCCCCCe----EEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 48 KVKECPQ----ILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 48 ~V~SIPT----Li~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
++.+||+ +++=++|+++.+..|..+.+++++.|..++
T Consensus 141 ~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 141 EARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred cCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 5668994 666699999999999999999999998765
No 175
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=94.18 E-value=0.23 Score=31.39 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCC-EEeEeeecccCHHHHHHHHHH
Q 037669 10 TLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGN-RILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 10 ~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnG-e~v~r~~G~~~keeL~~~L~~ 82 (98)
..+.+.++...+=+ .+.|+-++ +++++.++++.. |++++|+.+ +......|-.++++|.++|..
T Consensus 32 ~~~~f~~~A~~~r~-----~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 32 EYKTFEKVAESLRD-----DYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred HHHHHHHHHHhccc-----CCeEEEEC---hHHHHHHcCCCC-CceEEeCCcccCCccCCCCCCHHHHHHHHHh
Confidence 34455555544422 36777666 678999998754 999999875 444456777788999999864
No 176
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.14 E-value=0.31 Score=29.95 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=27.1
Q ss_pred CeEEEEeCCCCHh----HHHHcCCCCCCeEEEEeCCEEeE
Q 037669 30 PRAVKIDINIERD----LAYALKVKECPQILFLLGNRILY 65 (98)
Q Consensus 30 vkvvKVDVDenpe----LA~~y~V~SIPTLi~FKnGe~v~ 65 (98)
+.+..+|++++++ +.+..+-.++|++ |-||+.++
T Consensus 26 i~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~iG 63 (73)
T cd03027 26 LPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLVG 63 (73)
T ss_pred CceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 7788899999886 6666688999998 66887665
No 177
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.06 E-value=0.33 Score=29.34 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=24.9
Q ss_pred CeEEEEeCCCCHhHHHH----cCCC-CCCeEEEEeCCEEe
Q 037669 30 PRAVKIDINIERDLAYA----LKVK-ECPQILFLLGNRIL 64 (98)
Q Consensus 30 vkvvKVDVDenpeLA~~----y~V~-SIPTLi~FKnGe~v 64 (98)
+.+--+||+++++..++ +|.. ++|++ |-||+.+
T Consensus 25 i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~i 62 (75)
T cd03418 25 VDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHI 62 (75)
T ss_pred CcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEE
Confidence 77888899988776555 5777 99977 5678754
No 178
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=94.01 E-value=0.39 Score=29.33 Aligned_cols=34 Identities=18% Similarity=0.417 Sum_probs=26.5
Q ss_pred CCeEEEEeCCCCH-----hHHHHcCCCCCCeEEEEeCCEEe
Q 037669 29 PPRAVKIDINIER-----DLAYALKVKECPQILFLLGNRIL 64 (98)
Q Consensus 29 ~vkvvKVDVDenp-----eLA~~y~V~SIPTLi~FKnGe~v 64 (98)
+..++.+|.+++. ++.+.+|+.++|++ |-||+.+
T Consensus 26 ~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 26 KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 5788888888762 46677899999996 6788764
No 179
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=93.89 E-value=0.083 Score=37.92 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=30.5
Q ss_pred CeEEEEeCCCC-HhHHHHcCCCCCCeEEEE-eCCEEeEeeecccCH
Q 037669 30 PRAVKIDINIE-RDLAYALKVKECPQILFL-LGNRILYREKEFRTA 73 (98)
Q Consensus 30 vkvvKVDVDen-peLA~~y~V~SIPTLi~F-KnGe~v~r~~G~~~k 73 (98)
+..+++|+|.. ..+. ..| .++||++|+ .+|+++.++.|..+.
T Consensus 59 Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~vi~~i~Gy~~~ 102 (130)
T cd02960 59 FIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLTVRADITGRYSN 102 (130)
T ss_pred eEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCCCcccccccccC
Confidence 45557776622 1221 244 789999999 999999999998875
No 180
>PRK15000 peroxidase; Provisional
Probab=93.89 E-value=0.26 Score=36.70 Aligned_cols=49 Identities=12% Similarity=0.265 Sum_probs=41.8
Q ss_pred CCCCHhHHHHcCCC------CCCeEEEEe-CCEEeEeeecc----cCHHHHHHHHHHHhh
Q 037669 37 INIERDLAYALKVK------ECPQILFLL-GNRILYREKEF----RTADELVQMIAHFYY 85 (98)
Q Consensus 37 VDenpeLA~~y~V~------SIPTLi~FK-nGe~v~r~~G~----~~keeL~~~L~~~~~ 85 (98)
.|.+.+++.+|||. ++|+.+++. +|++.....|. ++-+++++.|+.+-|
T Consensus 104 sD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~~ 163 (200)
T PRK15000 104 ADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQF 163 (200)
T ss_pred ECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 46677899999998 799999995 99999998884 466899999988776
No 181
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=93.78 E-value=0.38 Score=31.17 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=23.5
Q ss_pred CCHhHHHHcCCC------CCCeEEEE-eCCEEeEe
Q 037669 39 IERDLAYALKVK------ECPQILFL-LGNRILYR 66 (98)
Q Consensus 39 enpeLA~~y~V~------SIPTLi~F-KnGe~v~r 66 (98)
.+.+++.+|++. .+|+.+++ ++|+++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 90 PDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp TTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred cchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 455788999999 99999999 88888875
No 182
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=93.77 E-value=0.16 Score=43.73 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=46.6
Q ss_pred CCCCeEEEEeCCCCH----hHHHHcCCCCCCeEEEE-eCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 27 RLPPRAVKIDINIER----DLAYALKVKECPQILFL-LGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 27 ~~~vkvvKVDVDenp----eLA~~y~V~SIPTLi~F-KnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
..+..||-|-|+.+. +.++-|.+-+||++.|+ ++|..++..+|+++.++|...|++..
T Consensus 49 ~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 49 SLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred hhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeeccccHHHHHHHHHHHH
Confidence 445566666666554 55666899999999998 99999999999999999998887643
No 183
>PRK13189 peroxiredoxin; Provisional
Probab=93.72 E-value=0.23 Score=37.61 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=39.6
Q ss_pred CCCHhHHHHcCCC-------CCCeEEEE-eCCEEeEeeec----ccCHHHHHHHHHHHhh
Q 037669 38 NIERDLAYALKVK-------ECPQILFL-LGNRILYREKE----FRTADELVQMIAHFYY 85 (98)
Q Consensus 38 DenpeLA~~y~V~-------SIPTLi~F-KnGe~v~r~~G----~~~keeL~~~L~~~~~ 85 (98)
|.+.+++.+|||. ++|+.+|+ ++|++.+...+ -++-+++++.|+.+-+
T Consensus 105 D~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~ 164 (222)
T PRK13189 105 DDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQT 164 (222)
T ss_pred cCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 5667899999986 67988888 59999998874 4568899999988765
No 184
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=93.56 E-value=1.5 Score=32.36 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=36.8
Q ss_pred CCCHhHHHHcCCC----CCC----eEEEE-eCCEEeEeeec----ccCHHHHHHHHHHHhhc
Q 037669 38 NIERDLAYALKVK----ECP----QILFL-LGNRILYREKE----FRTADELVQMIAHFYYK 86 (98)
Q Consensus 38 DenpeLA~~y~V~----SIP----TLi~F-KnGe~v~r~~G----~~~keeL~~~L~~~~~~ 86 (98)
|.+.+++.+||+. +.| +.+++ ++|++.+...| -++.++|++.|+.+-+.
T Consensus 95 D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~~ 156 (203)
T cd03016 95 DPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQLT 156 (203)
T ss_pred CchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhH
Confidence 3456889999987 344 46666 79999999987 45678999999876543
No 185
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=93.56 E-value=0.16 Score=37.86 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=30.6
Q ss_pred CeEEEEeCCCCHhHHHHc--------CCCCCCeEEEE-eCCEEeEeeecccCH
Q 037669 30 PRAVKIDINIERDLAYAL--------KVKECPQILFL-LGNRILYREKEFRTA 73 (98)
Q Consensus 30 vkvvKVDVDenpeLA~~y--------~V~SIPTLi~F-KnGe~v~r~~G~~~k 73 (98)
+--||||.|+.|++...| |..+-|+-+|. -+|+.++-.+ +.|+
T Consensus 73 FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~~t-Y~P~ 124 (163)
T PF03190_consen 73 FIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFGGT-YFPP 124 (163)
T ss_dssp -EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEEES-S--S
T ss_pred EEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeeeee-ecCC
Confidence 778999999999999999 89999998888 7999998844 4444
No 186
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.13 Score=44.25 Aligned_cols=74 Identities=23% Similarity=0.175 Sum_probs=57.2
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCE--EeEeeecccCHHHHHHHHHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNR--ILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe--~v~r~~G~~~keeL~~~L~~~ 83 (98)
-|-+..+-++|+-+.+ +|.+.+.|.|+|+..|.--. .+|.+.|||.+|+.|. -.-...|-++-++|...|+..
T Consensus 398 HCk~laP~~eeLAe~~---~~~~~vviAKmDaTaNd~~~--~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 398 HCKALAPIYEELAEKY---KDDENVVIAKMDATANDVPS--LKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred hhhhhhhHHHHHHHHh---cCCCCcEEEEeccccccCcc--ccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccC
Confidence 3556666777777765 46889999999999997544 4556699999999998 455567999999999888764
Q ss_pred h
Q 037669 84 Y 84 (98)
Q Consensus 84 ~ 84 (98)
=
T Consensus 473 a 473 (493)
T KOG0190|consen 473 A 473 (493)
T ss_pred C
Confidence 3
No 187
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=93.30 E-value=0.35 Score=35.88 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=40.9
Q ss_pred CCCCHhHHHHcCC----CCC--CeEEEE-eCCEEeEeeecc----cCHHHHHHHHHHHhh
Q 037669 37 INIERDLAYALKV----KEC--PQILFL-LGNRILYREKEF----RTADELVQMIAHFYY 85 (98)
Q Consensus 37 VDenpeLA~~y~V----~SI--PTLi~F-KnGe~v~r~~G~----~~keeL~~~L~~~~~ 85 (98)
.|.+.+++.+||| .++ |+.+++ ++|++++..... ++-+++++.|+.+=|
T Consensus 98 sD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~ 157 (187)
T PRK10382 98 GDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY 157 (187)
T ss_pred EcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhh
Confidence 4567899999999 366 999999 599999987553 688999999988877
No 188
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=92.82 E-value=0.16 Score=35.25 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=29.2
Q ss_pred CCC-----eEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 51 ECP-----QILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 51 SIP-----TLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
++| |+++=++|+++++..|..+.++|++.|+.+
T Consensus 115 ~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 115 KEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 589 566669999999999999999999999875
No 189
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=92.66 E-value=2.7 Score=33.20 Aligned_cols=49 Identities=10% Similarity=0.144 Sum_probs=40.8
Q ss_pred CCCCHhHHHHcCCC-----CCCeEEEEe-CCEEeEeee----cccCHHHHHHHHHHHhh
Q 037669 37 INIERDLAYALKVK-----ECPQILFLL-GNRILYREK----EFRTADELVQMIAHFYY 85 (98)
Q Consensus 37 VDenpeLA~~y~V~-----SIPTLi~FK-nGe~v~r~~----G~~~keeL~~~L~~~~~ 85 (98)
.|.+.++|.+|||. ++|+.+++. +|++.+... .-++-+|+++.|+.+=|
T Consensus 168 sD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq~ 226 (261)
T PTZ00137 168 SDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQF 226 (261)
T ss_pred EcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhch
Confidence 45568899999996 699999995 999999874 24678999999988875
No 190
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=92.52 E-value=0.91 Score=30.61 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=30.6
Q ss_pred HhHHHHcCCCC------CCeEEEE-eCCEEeEeeecccC--HHHHHHHH
Q 037669 41 RDLAYALKVKE------CPQILFL-LGNRILYREKEFRT--ADELVQMI 80 (98)
Q Consensus 41 peLA~~y~V~S------IPTLi~F-KnGe~v~r~~G~~~--keeL~~~L 80 (98)
..++.+|||.. .|+.+++ +||++++..+|... ..++++.|
T Consensus 93 ~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 93 HSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred cHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 56788999863 7898888 59999999998643 45566555
No 191
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=92.30 E-value=0.14 Score=36.03 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.5
Q ss_pred CCCCHhHHHHcCCCCCCeEEEEeCCE
Q 037669 37 INIERDLAYALKVKECPQILFLLGNR 62 (98)
Q Consensus 37 VDenpeLA~~y~V~SIPTLi~FKnGe 62 (98)
+.++.+.|.++||.++||+++..++.
T Consensus 155 l~~~~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 155 IQEDQKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHHHHHcCCCccCEEEEEeCCe
Confidence 44567889999999999999998887
No 192
>PRK13599 putative peroxiredoxin; Provisional
Probab=92.28 E-value=2.6 Score=31.81 Aligned_cols=49 Identities=10% Similarity=0.054 Sum_probs=39.1
Q ss_pred CCCCHhHHHHcCCC-------CCCeEEEE-eCCEEeEeeecc----cCHHHHHHHHHHHhh
Q 037669 37 INIERDLAYALKVK-------ECPQILFL-LGNRILYREKEF----RTADELVQMIAHFYY 85 (98)
Q Consensus 37 VDenpeLA~~y~V~-------SIPTLi~F-KnGe~v~r~~G~----~~keeL~~~L~~~~~ 85 (98)
.|.+.++|.+||+. ++|+.+++ ++|++.+..... +.-+++++.|+.+-.
T Consensus 97 ~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~ 157 (215)
T PRK13599 97 ADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQT 157 (215)
T ss_pred ECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 45677899999984 78999999 599999987532 458999999987644
No 193
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=92.18 E-value=1.2 Score=35.06 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=45.7
Q ss_pred CeEEEEeCCC-----------CHhHHHHcCCCCCCeEEEE--eCCEEeEeeecccCHHHHHHHHHHHhhc
Q 037669 30 PRAVKIDINI-----------ERDLAYALKVKECPQILFL--LGNRILYREKEFRTADELVQMIAHFYYK 86 (98)
Q Consensus 30 vkvvKVDVDe-----------npeLA~~y~V~SIPTLi~F--KnGe~v~r~~G~~~keeL~~~L~~~~~~ 86 (98)
+.++-|.+|. +...|+++||..+|++++. +.|+..==..|+++.++|.+-|.....+
T Consensus 174 ~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 174 LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhc
Confidence 7788888886 3458899999999999999 3456666778999999999888765443
No 194
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=91.72 E-value=0.53 Score=29.59 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=23.4
Q ss_pred CeEEEEeCCCCHhHHHHcCCCCCCeEEEEe
Q 037669 30 PRAVKIDINIERDLAYALKVKECPQILFLL 59 (98)
Q Consensus 30 vkvvKVDVDenpeLA~~y~V~SIPTLi~FK 59 (98)
+..++||++++...+..++ .++||++|+.
T Consensus 53 fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 53 FVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp SEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred EEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 9999999998887664333 7799999984
No 195
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=91.57 E-value=2.8 Score=30.71 Aligned_cols=49 Identities=8% Similarity=0.167 Sum_probs=36.7
Q ss_pred CCCHhHHHHcCCC------CCCeEEEE-eCCEEeEeeeccc----CHHHHHHHHHHHhhc
Q 037669 38 NIERDLAYALKVK------ECPQILFL-LGNRILYREKEFR----TADELVQMIAHFYYK 86 (98)
Q Consensus 38 DenpeLA~~y~V~------SIPTLi~F-KnGe~v~r~~G~~----~keeL~~~L~~~~~~ 86 (98)
|.+.+++..||+. ..|+.+++ ++|++++..+|.. +-+++++.|+.+=+-
T Consensus 107 D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~~~ 166 (199)
T PTZ00253 107 DKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFV 166 (199)
T ss_pred CcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhhhH
Confidence 4456799999996 46888888 5999999887743 446777877766654
No 196
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=91.38 E-value=1 Score=31.90 Aligned_cols=57 Identities=19% Similarity=0.150 Sum_probs=34.6
Q ss_pred hhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHh-------HHH--HcCCCCCCeEEEEeCCEEeEeeec
Q 037669 5 TKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERD-------LAY--ALKVKECPQILFLLGNRILYREKE 69 (98)
Q Consensus 5 ~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpe-------LA~--~y~V~SIPTLi~FKnGe~v~r~~G 69 (98)
-||-.+.+=++++.... .....++.|.|..-++ .-. .++|.+||||+-+.+| .|+.+
T Consensus 39 PDC~~aep~v~~~f~~~-----~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~---~rL~e 104 (119)
T PF06110_consen 39 PDCVAAEPVVEKAFKKA-----PENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETG---ERLVE 104 (119)
T ss_dssp HHHHHHHHHHHHHHHH------STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS----EEEH
T ss_pred HHHHHHHHHHHHHHHhC-----CCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCC---Cccch
Confidence 36777777788877551 2248899998855442 222 5999999999999988 55544
No 197
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=91.38 E-value=0.37 Score=32.11 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=28.3
Q ss_pred CCCCHhHHHHcCCC-----------------------------CCCeEEEE-eCCEEeEeeec
Q 037669 37 INIERDLAYALKVK-----------------------------ECPQILFL-LGNRILYREKE 69 (98)
Q Consensus 37 VDenpeLA~~y~V~-----------------------------SIPTLi~F-KnGe~v~r~~G 69 (98)
.|.+.+++.+||+. .+|+.+++ ++|++++...|
T Consensus 86 ~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 86 ADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred ECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 45677889999994 79999999 68999999887
No 198
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=91.15 E-value=0.79 Score=30.54 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=22.6
Q ss_pred CeEEEEeCCCCHh-------HHHHcCCCCCCeEEEEeCCEEe
Q 037669 30 PRAVKIDINIERD-------LAYALKVKECPQILFLLGNRIL 64 (98)
Q Consensus 30 vkvvKVDVDenpe-------LA~~y~V~SIPTLi~FKnGe~v 64 (98)
+.+--+|||++++ +....|..++|++ |-||+.+
T Consensus 33 i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i 72 (99)
T TIGR02189 33 VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV 72 (99)
T ss_pred CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE
Confidence 5556677777654 3444578999997 6788655
No 199
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.17 E-value=0.3 Score=36.11 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=36.6
Q ss_pred eCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 36 DINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 36 DVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
-+..+..+|.++||.+.||+++- |+ ...|..+.++|.+.|+..
T Consensus 200 ~i~~~~~~a~~~gv~gTPt~~v~--~~---~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 200 LIAKNYKLAQQLGVNGTPTFIVN--GK---LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHHHHHHhcCCCcCCeEEEC--Ce---eecCCCCHHHHHHHHHHh
Confidence 37789999999999999998764 44 889999999999988753
No 200
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=90.05 E-value=1.8 Score=27.98 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=25.2
Q ss_pred CeEEEEeCCCCHhHHHH----cCCCCCCeEEEEeCCEEe
Q 037669 30 PRAVKIDINIERDLAYA----LKVKECPQILFLLGNRIL 64 (98)
Q Consensus 30 vkvvKVDVDenpeLA~~----y~V~SIPTLi~FKnGe~v 64 (98)
+.+-.+|+++++++.+. .|-.++|++ |-||+.+
T Consensus 38 i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~i 74 (90)
T cd03028 38 VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELV 74 (90)
T ss_pred CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEE
Confidence 67788888888776544 588899997 6689864
No 201
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=90.02 E-value=1 Score=35.32 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHH
Q 037669 11 LKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 11 ~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~ 82 (98)
.++..++++.+|... . ...+.-+|.+=.+|+|.++|++++. .+.-..++.|=++=.+-++.+..
T Consensus 129 fk~Ta~~v~~L~~~~--~-----~~gv~IDP~lF~~F~I~~VPafVv~-C~~~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 129 LKTTAEAVLSLVKDG--A-----TDGVQIDPTLFSQYGIRSVPALVVF-CSQGYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred HHHHHHHHHHHhccC--C-----CCceeECHHHHHhcCCccccEEEEE-cCCCCCEEEecccHHHHHHHHHh
Confidence 466688888888532 1 2356678999999999999999997 45677899999987777766664
No 202
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=89.64 E-value=0.67 Score=30.72 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=29.4
Q ss_pred CCCHhHHHHcCCCCCC---------eEEEE-eCCEEeEeeecccC
Q 037669 38 NIERDLAYALKVKECP---------QILFL-LGNRILYREKEFRT 72 (98)
Q Consensus 38 DenpeLA~~y~V~SIP---------TLi~F-KnGe~v~r~~G~~~ 72 (98)
|.+..++..||+...| +.+++ ++|+++++..|..+
T Consensus 87 D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 87 DPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred CCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 6677899999999777 66666 57999999999886
No 203
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.86 E-value=0.86 Score=35.70 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=39.6
Q ss_pred CHhHHHHcCCCCCCeEEEEeCCEEeEeeec--ccCHHHHHHHHHHHh
Q 037669 40 ERDLAYALKVKECPQILFLLGNRILYREKE--FRTADELVQMIAHFY 84 (98)
Q Consensus 40 npeLA~~y~V~SIPTLi~FKnGe~v~r~~G--~~~keeL~~~L~~~~ 84 (98)
..-|.++.|+.++|||++-+||++----.| +.+.+++...|....
T Consensus 163 ~r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 163 SRRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 467889999999999999999999988888 888899988887654
No 204
>PRK13191 putative peroxiredoxin; Provisional
Probab=88.53 E-value=2.3 Score=32.04 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=39.0
Q ss_pred CCCCHhHHHHcCCC-------CCCeEEEE-eCCEEeEeeecc----cCHHHHHHHHHHHhh
Q 037669 37 INIERDLAYALKVK-------ECPQILFL-LGNRILYREKEF----RTADELVQMIAHFYY 85 (98)
Q Consensus 37 VDenpeLA~~y~V~-------SIPTLi~F-KnGe~v~r~~G~----~~keeL~~~L~~~~~ 85 (98)
.|.+.+++.+|||. ++|+.+|+ ++|++.+...+- ++-+|+++.|+.+-+
T Consensus 102 sD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~ 162 (215)
T PRK13191 102 ADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQL 162 (215)
T ss_pred ECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 45567889999984 47999988 599999987653 567999999988765
No 205
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=87.88 E-value=0.93 Score=32.33 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=33.2
Q ss_pred EeCC-CCHhHHHHcCCCCCC---------eEEEE-eCCEEeEeeecc--cCHHHHHHHHH
Q 037669 35 IDIN-IERDLAYALKVKECP---------QILFL-LGNRILYREKEF--RTADELVQMIA 81 (98)
Q Consensus 35 VDVD-enpeLA~~y~V~SIP---------TLi~F-KnGe~v~r~~G~--~~keeL~~~L~ 81 (98)
+=.| ...+++.+|||...| +.+++ ++|++++..+|. .+...+.+.|+
T Consensus 104 ~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~ 163 (167)
T PRK00522 104 TLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALA 163 (167)
T ss_pred EeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHH
Confidence 3344 455899999999888 77777 699999999753 44444444444
No 206
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=86.71 E-value=1.4 Score=28.63 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=27.6
Q ss_pred CCeEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 52 CPQILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 52 IPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
-.|+.+|.+|+++ .+|..+.+++.+.++.++
T Consensus 49 ~~t~~IF~sGki~--itGaks~~~~~~a~~~i~ 79 (86)
T PF00352_consen 49 KATVLIFSSGKIV--ITGAKSEEEAKKAIEKIL 79 (86)
T ss_dssp TEEEEEETTSEEE--EEEESSHHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEE--EEecCCHHHHHHHHHHHH
Confidence 5799999999997 589999999999988876
No 207
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=86.44 E-value=0.62 Score=28.05 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=18.2
Q ss_pred CCHhHHHHcCCCCCCeEEEEe
Q 037669 39 IERDLAYALKVKECPQILFLL 59 (98)
Q Consensus 39 enpeLA~~y~V~SIPTLi~FK 59 (98)
++..++.++||.++||+++..
T Consensus 71 ~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 71 ADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHHHcCCCCCCEEEECC
Confidence 566789999999999999865
No 208
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=86.01 E-value=0.98 Score=36.11 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=55.9
Q ss_pred CCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHhhcCCCC
Q 037669 27 RLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFYYKARRP 90 (98)
Q Consensus 27 ~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~~~~~p 90 (98)
-.++++.+|||-.||-|.-+|=|-..||+-=.|+|+ .=|..|.++++++.+++++==|.--.|
T Consensus 70 dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGe-FrrysgaRdk~dfisf~~~r~w~~i~p 132 (248)
T KOG0913|consen 70 DLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGE-FRRYSGARDKNDFISFEEHREWQSIDP 132 (248)
T ss_pred CCceeEEEEEEEeccccceeeEEEecceEEEeeccc-cccccCcccchhHHHHHHhhhhhccCC
Confidence 378999999999999999999999999999999997 468999999999999998776664444
No 209
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=85.82 E-value=1.6 Score=28.61 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=32.3
Q ss_pred CCHhHHHHcCCCCCCeEEEEeC-CEEeEee-ecccCHHHHHHHHHH
Q 037669 39 IERDLAYALKVKECPQILFLLG-NRILYRE-KEFRTADELVQMIAH 82 (98)
Q Consensus 39 enpeLA~~y~V~SIPTLi~FKn-Ge~v~r~-~G~~~keeL~~~L~~ 82 (98)
-+++++..+++. .|+++++++ .+..... -|..++++|.++|..
T Consensus 55 ~~~~~~~~~~~~-~~~i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~ 99 (102)
T cd03066 55 FDSKVAKKLGLK-MNEVDFYEPFMEEPVTIPDKPYSEEELVDFVEE 99 (102)
T ss_pred CcHHHHHHcCCC-CCcEEEeCCCCCCCcccCCCCCCHHHHHHHHHH
Confidence 355788888774 799999977 4443334 578899999999875
No 210
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=84.61 E-value=1.1 Score=37.38 Aligned_cols=54 Identities=11% Similarity=0.160 Sum_probs=47.6
Q ss_pred EEEeCCCCHhHHHHcCCCCCCeEEEE--eCCEEeEeeecccCHHHHHHHHHHHhhc
Q 037669 33 VKIDINIERDLAYALKVKECPQILFL--LGNRILYREKEFRTADELVQMIAHFYYK 86 (98)
Q Consensus 33 vKVDVDenpeLA~~y~V~SIPTLi~F--KnGe~v~r~~G~~~keeL~~~L~~~~~~ 86 (98)
+-.|..+.+.+.+-|.+.+.|.+.++ .-|+.+++..|+++.+++.+.+..|.-.
T Consensus 136 V~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~ 191 (356)
T KOG1364|consen 136 VLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDS 191 (356)
T ss_pred EeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhc
Confidence 34566677889999999999988888 7899999999999999999999999865
No 211
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=84.29 E-value=2 Score=31.64 Aligned_cols=59 Identities=15% Similarity=0.221 Sum_probs=39.3
Q ss_pred CCCCCeEEEEeCCCCHhHHHH---cC---CCCCCeEEEEeCCEEeEee----ecccCHHHHHHHHHHHh
Q 037669 26 DRLPPRAVKIDINIERDLAYA---LK---VKECPQILFLLGNRILYRE----KEFRTADELVQMIAHFY 84 (98)
Q Consensus 26 ~~~~vkvvKVDVDenpeLA~~---y~---V~SIPTLi~FKnGe~v~r~----~G~~~keeL~~~L~~~~ 84 (98)
|+-|=+.+-|=.-.+.|-.++ |= --|-|++.+||||++++=+ +-=++.++|.+.|..-|
T Consensus 64 ~kkPD~lvTVFAGqDkEAt~~aR~yf~~~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af 132 (136)
T PF06491_consen 64 DKKPDHLVTVFAGQDKEATAKAREYFEPYPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAF 132 (136)
T ss_dssp SS--SEEEEEETTTSHHHHHHHHHTSTTS---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHH
T ss_pred CCCCCceEEeccCCCHHHHHHHHHhcCCCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHH
Confidence 577888999988888776544 33 2389999999999999743 34466777777766554
No 212
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=83.89 E-value=6.1 Score=26.13 Aligned_cols=34 Identities=6% Similarity=0.063 Sum_probs=25.2
Q ss_pred CeEEEEeCCCCHhHHH----HcCCCCCCeEEEEeCCEEeE
Q 037669 30 PRAVKIDINIERDLAY----ALKVKECPQILFLLGNRILY 65 (98)
Q Consensus 30 vkvvKVDVDenpeLA~----~y~V~SIPTLi~FKnGe~v~ 65 (98)
+.+..+||++++++.+ ..|-.++|++ |-||+.++
T Consensus 42 i~~~~~di~~~~~~~~~l~~~tg~~tvP~v--fi~g~~iG 79 (97)
T TIGR00365 42 VPFAYVNVLEDPEIRQGIKEYSNWPTIPQL--YVKGEFVG 79 (97)
T ss_pred CCEEEEECCCCHHHHHHHHHHhCCCCCCEE--EECCEEEe
Confidence 6778899988886554 4567799987 66887653
No 213
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=83.23 E-value=3.7 Score=26.40 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCCCCCeEEEEeCCCCH-----hHHHHc-CCCCCCeEEEEeCCEE
Q 037669 16 KAIQVYWSAKDRLPPRAVKIDINIER-----DLAYAL-KVKECPQILFLLGNRI 63 (98)
Q Consensus 16 k~~~~~~~~~~~~~vkvvKVDVDenp-----eLA~~y-~V~SIPTLi~FKnGe~ 63 (98)
+|-..+.+. .+.+.-+|++.++ +.+.+. |.+++|+++ -||+.
T Consensus 16 ~ak~~L~~~----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~--i~~~~ 63 (80)
T COG0695 16 RAKRLLDRK----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF--IGGKH 63 (80)
T ss_pred HHHHHHHHc----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE--ECCEE
Confidence 444455534 3777777777776 445555 899999865 47763
No 214
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=81.81 E-value=2.7 Score=26.92 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=29.8
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEE---eCCCCHhHHHHcCCCCCCeEE
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKI---DINIERDLAYALKVKECPQIL 56 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKV---DVDenpeLA~~y~V~SIPTLi 56 (98)
|-+..+.|+++.+.+ .. .+.++.+ |.++..++++++++.++|+++
T Consensus 36 C~~~~p~l~~~~~~~-~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 36 CKKLLPVIRSIARAE-AD----WLDVVLASDGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred hHhHhHHHHHHHHHh-cC----CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence 445567777654432 22 2777766 445566788999999999874
No 215
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.28 E-value=2 Score=37.05 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHH
Q 037669 13 ELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 13 el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~ 82 (98)
..+.|..+.=-- .|.++-.-||=---++=.++-+||++||+ |.||++.. .|-++-++|...|.+
T Consensus 133 DVVQALN~msvl--Np~I~H~~IdGa~Fq~Evear~IMaVPtv--flnGe~fg--~GRmtleeilaki~~ 196 (520)
T COG3634 133 DVVQALNLMSVL--NPRIKHTAIDGALFQDEVEARNIMAVPTV--FLNGEEFG--QGRMTLEEILAKIDT 196 (520)
T ss_pred HHHHHHHHHHhc--CCCceeEEecchhhHhHHHhccceecceE--EEcchhhc--ccceeHHHHHHHhcC
Confidence 344444443322 46688888888888888999999999995 77999876 477787777777654
No 216
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=77.79 E-value=2.3 Score=31.80 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=28.7
Q ss_pred CeEEEEeCCCCHhHHHHcCCCCCCeEEEE-eCCEEeEe
Q 037669 30 PRAVKIDINIERDLAYALKVKECPQILFL-LGNRILYR 66 (98)
Q Consensus 30 vkvvKVDVDenpeLA~~y~V~SIPTLi~F-KnGe~v~r 66 (98)
=.++--+-+..++|..+|+|.+||+|++. -||..+.+
T Consensus 94 W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 94 WLAIPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred eEEecCCCHHHHHHHHhcccCcCceeEEecCCCCEehH
Confidence 44555566677889999999999999988 57766654
No 217
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=77.71 E-value=4.8 Score=29.76 Aligned_cols=29 Identities=10% Similarity=0.437 Sum_probs=25.9
Q ss_pred eEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 54 QILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 54 TLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
|+++|..|+++ .+|..+.+++.+.++.++
T Consensus 141 t~lIF~sGkvv--itGaks~~~~~~a~~~i~ 169 (174)
T cd00652 141 VLLIFVSGKIV--ITGAKSREDIYEAVEKIY 169 (174)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHHH
Confidence 66899999997 689999999999998876
No 218
>PRK00394 transcription factor; Reviewed
Probab=77.55 E-value=4.9 Score=29.99 Aligned_cols=30 Identities=3% Similarity=0.200 Sum_probs=26.7
Q ss_pred CeEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 53 PQILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 53 PTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
.|+++|..|+++ .+|..+.+++.+.++.++
T Consensus 140 ~~~lIF~SGKvv--itGaks~~~~~~a~~~i~ 169 (179)
T PRK00394 140 VVVLLFGSGKLV--ITGAKSEEDAEKAVEKIL 169 (179)
T ss_pred EEEEEEcCCEEE--EEecCCHHHHHHHHHHHH
Confidence 478899999998 689999999999998876
No 219
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=77.33 E-value=5 Score=29.87 Aligned_cols=30 Identities=3% Similarity=0.231 Sum_probs=26.7
Q ss_pred eEEEEeCCEEeEeeecccCHHHHHHHHHHHhh
Q 037669 54 QILFLLGNRILYREKEFRTADELVQMIAHFYY 85 (98)
Q Consensus 54 TLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~ 85 (98)
|+++|..|+++ .+|..+.+++.+.++.++-
T Consensus 140 ~~lIF~SGKvv--itGaks~~~~~~a~~~i~~ 169 (174)
T cd04518 140 VLLLFSSGKMV--ITGAKSEEDAKRAVEKLLS 169 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 77899999998 6899999999999988763
No 220
>PLN00062 TATA-box-binding protein; Provisional
Probab=76.10 E-value=5.5 Score=29.88 Aligned_cols=30 Identities=13% Similarity=0.351 Sum_probs=26.5
Q ss_pred CeEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 53 PQILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 53 PTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
-|+++|..|+++ .+|..+.+++.+.++.+|
T Consensus 139 ~~~liF~sGkvv--itGaks~~~~~~ai~~i~ 168 (179)
T PLN00062 139 IVLLIFVSGKIV--ITGAKVREEIYTAFENIY 168 (179)
T ss_pred EEEEEeCCCEEE--EEecCCHHHHHHHHHHHH
Confidence 378899999998 689999999999998876
No 221
>COG3411 Ferredoxin [Energy production and conversion]
Probab=75.24 E-value=7.7 Score=25.24 Aligned_cols=37 Identities=5% Similarity=0.035 Sum_probs=32.1
Q ss_pred CeEEEEeCCEEeEeeecccCHHHHHHHHHHHhhcCCCCCCC
Q 037669 53 PQILFLLGNRILYREKEFRTADELVQMIAHFYYKARRPSWI 93 (98)
Q Consensus 53 PTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~~~~~p~~~ 93 (98)
|+|++|-+| -.-+-++.+...+.++.|+-+++++..+
T Consensus 18 Pvl~vYpeg----vWY~~V~p~~a~rIv~~hl~~Gr~Ve~~ 54 (64)
T COG3411 18 PVLVVYPEG----VWYTRVDPEDARRIVQSHLLGGRPVEEL 54 (64)
T ss_pred CEEEEecCC----eeEeccCHHHHHHHHHHHHhCCCcchhh
Confidence 999999999 4567789999999999999998887654
No 222
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=75.09 E-value=6.1 Score=29.32 Aligned_cols=30 Identities=7% Similarity=0.210 Sum_probs=26.6
Q ss_pred eEEEEeCCEEeEeeecccCHHHHHHHHHHHhh
Q 037669 54 QILFLLGNRILYREKEFRTADELVQMIAHFYY 85 (98)
Q Consensus 54 TLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~ 85 (98)
|+++|..|+++ .+|..+.+++.+.++.+|-
T Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~p 170 (174)
T cd04517 141 TLSIFSTGSVT--VTGARSMEDVREAVEKIYP 170 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 78899999997 6899999999999988873
No 223
>PHA03050 glutaredoxin; Provisional
Probab=74.64 E-value=13 Score=25.33 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=23.7
Q ss_pred eEEEEeCCC---C----HhHHHHcCCCCCCeEEEEeCCEEeE
Q 037669 31 RAVKIDINI---E----RDLAYALKVKECPQILFLLGNRILY 65 (98)
Q Consensus 31 kvvKVDVDe---n----peLA~~y~V~SIPTLi~FKnGe~v~ 65 (98)
.+--+|+|+ . .+|.+..|-.+||++ |-||+.+.
T Consensus 42 ~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~iG 81 (108)
T PHA03050 42 AYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTSIG 81 (108)
T ss_pred CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEEEe
Confidence 455677776 2 347777899999998 66788653
No 224
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=74.36 E-value=2.1 Score=31.36 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=17.4
Q ss_pred CCCHhHHHHcCCCCCCeEEEEe
Q 037669 38 NIERDLAYALKVKECPQILFLL 59 (98)
Q Consensus 38 DenpeLA~~y~V~SIPTLi~FK 59 (98)
.++.+-|.+.||.++||+++=.
T Consensus 166 ~~~~~~A~~~Gv~GVP~fvv~~ 187 (209)
T cd03021 166 KENTDEALKYGAFGLPWIVVTN 187 (209)
T ss_pred HHHHHHHHHcCCCCCCEEEEEc
Confidence 4455667888999999999854
No 225
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=74.25 E-value=6.6 Score=29.23 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=26.0
Q ss_pred eEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 54 QILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 54 TLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
|+++|..|+++ .+|..+.+++.+.++.+|
T Consensus 140 ~~liF~sGkvv--itGaks~~~~~~a~~~i~ 168 (174)
T cd04516 140 VLLIFVSGKIV--LTGAKSREEIYQAFENIY 168 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHH
Confidence 57899999998 689999999999998876
No 226
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=74.24 E-value=6.2 Score=26.02 Aligned_cols=39 Identities=5% Similarity=0.117 Sum_probs=28.9
Q ss_pred CHhHHHHcCCCCCCeEEEEe---------CCEEeEeeecccCHHHHHHHHHH
Q 037669 40 ERDLAYALKVKECPQILFLL---------GNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 40 npeLA~~y~V~SIPTLi~FK---------nGe~v~r~~G~~~keeL~~~L~~ 82 (98)
+.+++.+|++ -|++++|+ .|.. ...|-.+.++|.++|..
T Consensus 55 ~~~~~~~~~~--~~~ivl~~p~~~~~k~de~~~--~y~g~~~~~~l~~fi~~ 102 (104)
T cd03069 55 DKQLLEKYGY--GEGVVLFRPPRLSNKFEDSSV--KFDGDLDSSKIKKFIRE 102 (104)
T ss_pred hHHHHHhcCC--CCceEEEechhhhcccCcccc--cccCcCCHHHHHHHHHh
Confidence 4578889998 78999993 3333 34777788999999875
No 227
>PRK00394 transcription factor; Reviewed
Probab=73.73 E-value=6.6 Score=29.32 Aligned_cols=32 Identities=6% Similarity=0.129 Sum_probs=27.7
Q ss_pred CCeEEEEeCCEEeEeeecccCHHHHHHHHHHHhh
Q 037669 52 CPQILFLLGNRILYREKEFRTADELVQMIAHFYY 85 (98)
Q Consensus 52 IPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~ 85 (98)
-.|+++|.+|+++ .+|..+.+++...+++++-
T Consensus 46 k~t~lIf~sGKiv--~tGa~S~~~a~~a~~~~~~ 77 (179)
T PRK00394 46 KIAALIFRSGKVV--CTGAKSVEDLHEAVKIIIK 77 (179)
T ss_pred ceEEEEEcCCcEE--EEccCCHHHHHHHHHHHHH
Confidence 3899999999997 5899999999988887753
No 228
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=72.82 E-value=9.6 Score=28.26 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=35.2
Q ss_pred EEEeCCCCHhHHHHcCCC------------CCCeEEEE-eCCEEeEeeecccCH---HHHHHHHHH
Q 037669 33 VKIDINIERDLAYALKVK------------ECPQILFL-LGNRILYREKEFRTA---DELVQMIAH 82 (98)
Q Consensus 33 vKVDVDenpeLA~~y~V~------------SIPTLi~F-KnGe~v~r~~G~~~k---eeL~~~L~~ 82 (98)
+.+=.|++.+++++|||- ..++-+++ ++|++......+..+ +++++.|+.
T Consensus 89 f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~ 154 (157)
T COG1225 89 FPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKK 154 (157)
T ss_pred ceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHH
Confidence 445568999999999993 44554555 889999988777766 444444443
No 229
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=72.81 E-value=7.7 Score=28.87 Aligned_cols=30 Identities=7% Similarity=0.153 Sum_probs=24.5
Q ss_pred CeEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 53 PQILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 53 PTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
.|+++|.+|+++ .+|..+.+++...+++++
T Consensus 48 ~t~lIF~SGKiv--iTGaks~e~a~~a~~~i~ 77 (174)
T cd04516 48 TTALIFSSGKMV--CTGAKSEDDSKLAARKYA 77 (174)
T ss_pred EEEEEECCCeEE--EEecCCHHHHHHHHHHHH
Confidence 478999999998 579999998887666554
No 230
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=72.66 E-value=21 Score=24.52 Aligned_cols=70 Identities=17% Similarity=0.099 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEEE-eCCCCH-----------hHHHHcCCC--CCCeEEEEeCCEEeEeeecccCHHH
Q 037669 10 TLKELEKAIQVYWSAKDRLPPRAVKI-DINIER-----------DLAYALKVK--ECPQILFLLGNRILYREKEFRTADE 75 (98)
Q Consensus 10 ~~~el~k~~~~~~~~~~~~~vkvvKV-DVDenp-----------eLA~~y~V~--SIPTLi~FKnGe~v~r~~G~~~kee 75 (98)
.+++|..+-.-+.+-. +.++.+ +-.... .|-++|++. +.-.+++=|||.+.-|..+.++.++
T Consensus 28 q~~~L~~~~~~l~eRd----i~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~ 103 (118)
T PF13778_consen 28 QLEELQNNRCGLDERD----IVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEE 103 (118)
T ss_pred HHHHHHhhhhccccCc----eEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHH
Confidence 3455555444565554 666665 333333 899999954 5556666699999999999999999
Q ss_pred HHHHHHHH
Q 037669 76 LVQMIAHF 83 (98)
Q Consensus 76 L~~~L~~~ 83 (98)
|-+.|+..
T Consensus 104 lf~~ID~M 111 (118)
T PF13778_consen 104 LFDTIDAM 111 (118)
T ss_pred HHHHHhCC
Confidence 99998764
No 231
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=72.63 E-value=1.1 Score=29.95 Aligned_cols=51 Identities=16% Similarity=0.299 Sum_probs=38.0
Q ss_pred EeCCCCHhHHHHcCCC----CCCeEEEEeCCEE---eEeeecccCHHHHHHHHHHHhh
Q 037669 35 IDINIERDLAYALKVK----ECPQILFLLGNRI---LYREKEFRTADELVQMIAHFYY 85 (98)
Q Consensus 35 VDVDenpeLA~~y~V~----SIPTLi~FKnGe~---v~r~~G~~~keeL~~~L~~~~~ 85 (98)
+|.+.-.+-|.+|||. +--||.+++|-++ .|..-|-.+|..|..+|.++|-
T Consensus 7 lnf~afk~was~ygvefktngsqtlaii~~ekislgqwh~rgrvskavlvkmlrkly~ 64 (79)
T PF09061_consen 7 LNFNAFKEWASKYGVEFKTNGSQTLAIIKNEKISLGQWHTRGRVSKAVLVKMLRKLYE 64 (79)
T ss_dssp --HHHHHHHHHTTT-EEEEETTEEEEEETTEEEE-TTHHHHS-EEHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCeEEecCCceEEEeecCceeehhhhhhcCcchHHHHHHHHHHHHH
Confidence 3444556778888885 7788999888776 4777899999999999999885
No 232
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=71.95 E-value=17 Score=26.19 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=34.3
Q ss_pred HHHHcCCCCCCeEEEEe-CC---EEeEeeecccCHHHHHHHHHH
Q 037669 43 LAYALKVKECPQILFLL-GN---RILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 43 LA~~y~V~SIPTLi~FK-nG---e~v~r~~G~~~keeL~~~L~~ 82 (98)
.+..++..+.|.+.+.- .. +++.++.|..+.++|.+.|..
T Consensus 88 ~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~ 131 (136)
T cd02990 88 TIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIE 131 (136)
T ss_pred HHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHH
Confidence 56778999999998883 22 899999999999999998865
No 233
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=70.83 E-value=9.1 Score=28.31 Aligned_cols=31 Identities=3% Similarity=0.110 Sum_probs=26.1
Q ss_pred CCeEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 52 CPQILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 52 IPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
-.|+++|.+|+++ .+|..+.+++...++.+.
T Consensus 47 ~~t~lIf~sGKiv--itGaks~~~~~~a~~~~~ 77 (174)
T cd00652 47 KTTALIFSSGKMV--ITGAKSEEDAKLAARKYA 77 (174)
T ss_pred cEEEEEECCCEEE--EEecCCHHHHHHHHHHHH
Confidence 4799999999997 689999999888776664
No 234
>PLN00062 TATA-box-binding protein; Provisional
Probab=70.73 E-value=8.8 Score=28.77 Aligned_cols=30 Identities=3% Similarity=0.115 Sum_probs=25.2
Q ss_pred CeEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 53 PQILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 53 PTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
.|+++|..|+++ .+|..+.+++...++.++
T Consensus 48 ~t~lIF~SGKiv--iTGaks~e~a~~a~~~~~ 77 (179)
T PLN00062 48 TTALIFASGKMV--CTGAKSEHDSKLAARKYA 77 (179)
T ss_pred EEEEEECCCeEE--EEecCCHHHHHHHHHHHH
Confidence 489999999998 579999999887776654
No 235
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=70.01 E-value=16 Score=30.18 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=24.5
Q ss_pred CeEEEEeCCCCHhHHH---H---------cCCCCCCeEEEEeCCEEe
Q 037669 30 PRAVKIDINIERDLAY---A---------LKVKECPQILFLLGNRIL 64 (98)
Q Consensus 30 vkvvKVDVDenpeLA~---~---------y~V~SIPTLi~FKnGe~v 64 (98)
+.+--||||++++-++ + .|..++|++++ ||+.+
T Consensus 27 i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 27 IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 8888999998885333 2 47899999955 77643
No 236
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=69.91 E-value=9.2 Score=28.45 Aligned_cols=30 Identities=7% Similarity=0.212 Sum_probs=26.0
Q ss_pred CeEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 53 PQILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 53 PTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
.|+++|.+|+++ .+|..+.+++...++.++
T Consensus 48 ~t~lIF~SGKiv--~tGaks~~~a~~a~~~~~ 77 (174)
T cd04518 48 IAALIFRSGKMV--CTGAKSVEDLHRAVKEII 77 (174)
T ss_pred EEEEEECCCeEE--EEccCCHHHHHHHHHHHH
Confidence 699999999998 589999999888877765
No 237
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=67.89 E-value=22 Score=29.66 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=40.3
Q ss_pred CCCeEEEEeCCEE-eEeeecccCHHHHHHHHHHHhhcCCCCCCCCcC
Q 037669 51 ECPQILFLLGNRI-LYREKEFRTADELVQMIAHFYYKARRPSWIDKT 96 (98)
Q Consensus 51 SIPTLi~FKnGe~-v~r~~G~~~keeL~~~L~~~~~~~~~p~~~~~~ 96 (98)
-.|++.++++|+- =-|..|.=.-+|+-.+|..+|--+.+++-|++.
T Consensus 61 ~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l~~~ 107 (515)
T TIGR03140 61 RKPSFTILRDGADTGIRFAGIPGGHEFTSLVLAILQVGGHGPKLDEG 107 (515)
T ss_pred CCCeEEEecCCcccceEEEecCCcHHHHHHHHHHHHhcCCCCCCCHH
Confidence 4599999999874 368899999999999999999999999999864
No 238
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=67.74 E-value=12 Score=27.79 Aligned_cols=31 Identities=10% Similarity=-0.057 Sum_probs=25.7
Q ss_pred CCeEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 52 CPQILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 52 IPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
-.|+++|.+|+++ .+|..+.+++...++.+.
T Consensus 47 k~t~lIF~sGKiv--iTGaks~~~~~~a~~~~~ 77 (174)
T cd04517 47 RATASVWSSGKIT--ITGATSEEEAKQAARRAA 77 (174)
T ss_pred cEEEEEECCCeEE--EEccCCHHHHHHHHHHHH
Confidence 3689999999997 689999999888776654
No 239
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=67.61 E-value=16 Score=25.41 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=48.4
Q ss_pred HHHHhhcCCCCCeEEEEeC-CCCHhHHHHcCCCCCCeEEEEe-------CCEEeEeeecccCHHHHHHHHHH
Q 037669 19 QVYWSAKDRLPPRAVKIDI-NIERDLAYALKVKECPQILFLL-------GNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 19 ~~~~~~~~~~~vkvvKVDV-DenpeLA~~y~V~SIPTLi~FK-------nGe~v~r~~G~~~keeL~~~L~~ 82 (98)
.--|.. +.-...+++++- ++-.+|+++..-.++|+.++.. .|...--.+|..+++.+.+...+
T Consensus 41 ~~~W~~-~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~DAG~Tqi~~gt~TvlaigP~~~~~i~~itg~ 111 (115)
T cd02407 41 LRAWEL-EGQKKVVLKVPSEEELLELAKKAKELGLPHSLIQDAGRTQIPPGTPTVLAIGPAPKEKVDKVTGH 111 (115)
T ss_pred HHHHHh-CCCcEEEEECCCHHHHHHHHHHHHHcCCCeEEEEECCCcccCCCCceEEEECCCCHHHHHHHcCc
Confidence 345765 466778888886 5778889999999999999998 45567777888898887766544
No 240
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=64.66 E-value=31 Score=22.74 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=17.8
Q ss_pred HhHHHHcCCCCCC--------------eEEEE-eCCEEeEeee
Q 037669 41 RDLAYALKVKECP--------------QILFL-LGNRILYREK 68 (98)
Q Consensus 41 peLA~~y~V~SIP--------------TLi~F-KnGe~v~r~~ 68 (98)
..++.+||+..+| +++++ ++|+++++.-
T Consensus 99 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 99 EALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence 4667777766554 34555 6888877654
No 241
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=62.99 E-value=11 Score=26.27 Aligned_cols=61 Identities=8% Similarity=0.012 Sum_probs=46.7
Q ss_pred HHhhcCCCCCeEEEEe-CCCCHhHHHHcCCCCCCeEEEEeCCEE-------eEeeecccCHHHHHHHHHH
Q 037669 21 YWSAKDRLPPRAVKID-INIERDLAYALKVKECPQILFLLGNRI-------LYREKEFRTADELVQMIAH 82 (98)
Q Consensus 21 ~~~~~~~~~vkvvKVD-VDenpeLA~~y~V~SIPTLi~FKnGe~-------v~r~~G~~~keeL~~~L~~ 82 (98)
-|+. +.-+..++|++ -++-.+|+++..-.++|+.++...|.- .--.+|..+++.+.+...+
T Consensus 41 ~W~~-~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~Tei~~gs~TvlaigP~~~~~i~~itg~ 109 (113)
T PRK04322 41 EWLN-EGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLTQLPPGTVTALGIGPAPEEKIDKITGD 109 (113)
T ss_pred HHHH-CCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCcccCCCCcEEEEeCCCCHHHHHHhhCC
Confidence 4766 46777888886 667788899999999999999887754 4455688888888776554
No 242
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=62.84 E-value=21 Score=24.33 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=49.8
Q ss_pred HHHHHHHHhhcCCCCCeEEEEe-CCCCHhHHHHcCCCCCCeEEEEeCC-------EEeEeeecccCHHHHHHHHHHH
Q 037669 15 EKAIQVYWSAKDRLPPRAVKID-INIERDLAYALKVKECPQILFLLGN-------RILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 15 ~k~~~~~~~~~~~~~vkvvKVD-VDenpeLA~~y~V~SIPTLi~FKnG-------e~v~r~~G~~~keeL~~~L~~~ 83 (98)
.+..-..|... .-+..++|++ -++-.+|..+..-.++|+-++-.+| ...-=.+|..+++++.+...++
T Consensus 38 ~~~~~~~W~~~-g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag~Tei~pgs~TvlaigP~~~~~i~~it~~L 113 (116)
T PF01981_consen 38 DPEWLREWENN-GQKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAGRTEIPPGSVTVLAIGPAPKEEIDKITGHL 113 (116)
T ss_dssp HHHHHHHHHHT-TTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSSSSSSTTCEEEEEEEEEEHHHHHHHHTTS
T ss_pred CHHHHHHHhcC-CCceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCCCeEEEEECcCCHHHHHHHhCcC
Confidence 34445668663 5556677887 5567788888888999999998887 5566678899999998876543
No 243
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=62.54 E-value=13 Score=28.05 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=36.1
Q ss_pred eCCCCHhHHHHcCCCCCC-eEEEE-eCCEEeEeeecccCHHHHHHHHHH
Q 037669 36 DINIERDLAYALKVKECP-QILFL-LGNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 36 DVDenpeLA~~y~V~SIP-TLi~F-KnGe~v~r~~G~~~keeL~~~L~~ 82 (98)
=+|.+--++.+.+...-= +++++ |+|++++-.-|.++.+|+.+.|+-
T Consensus 108 vlD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 108 VLDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIAL 156 (160)
T ss_pred EEcCCCceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHH
Confidence 356666777777777543 34444 999999999999999999998863
No 244
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=62.25 E-value=15 Score=31.80 Aligned_cols=40 Identities=8% Similarity=0.179 Sum_probs=29.1
Q ss_pred CeEEEEeCCEEeEeeeccc--CHHHHHHHHHHHhhcCCCCCC
Q 037669 53 PQILFLLGNRILYREKEFR--TADELVQMIAHFYYKARRPSW 92 (98)
Q Consensus 53 PTLi~FKnGe~v~r~~G~~--~keeL~~~L~~~~~~~~~p~~ 92 (98)
=+++++++|+++++..=+. ..+.|.++|..||.+...|+.
T Consensus 254 v~v~~vR~G~l~~~~~~~~~~~~e~l~~fl~q~Y~~~~~P~~ 295 (519)
T PRK12306 254 LMVFNVYKGTLFDKKEFVFDYGENFLEEFLVQYYSENEPPKE 295 (519)
T ss_pred EEEEEEECCEEecceeeecCCcHHHHHHHHHHHhhCCCCCCE
Confidence 3567789999999964444 578888888888865445544
No 245
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=62.24 E-value=18 Score=29.08 Aligned_cols=45 Identities=18% Similarity=0.361 Sum_probs=38.0
Q ss_pred EEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHH
Q 037669 34 KIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 34 KVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~ 82 (98)
=+|...-+.++-+-+|-|+|. +|+||+.+. .+....+++++.++.
T Consensus 42 ii~a~~p~f~~~~~~V~SvP~--Vf~DGel~~--~dpVdp~~ies~~~G 86 (265)
T COG5494 42 IIDAELPPFLAFEKGVISVPS--VFIDGELVY--ADPVDPEEIESILSG 86 (265)
T ss_pred EEEcCCChHHHhhcceeecce--EEEcCeEEE--cCCCCHHHHHHHHcC
Confidence 368888999999999999998 478999986 578888888887754
No 246
>PF14430 Imm1: Immunity protein Imm1
Probab=62.13 E-value=14 Score=25.45 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=23.0
Q ss_pred cccCHHHHHHHHHHHhhcCCCCCCCC
Q 037669 69 EFRTADELVQMIAHFYYKARRPSWID 94 (98)
Q Consensus 69 G~~~keeL~~~L~~~~~~~~~p~~~~ 94 (98)
-.++-++..+.+..|+..++||+|+.
T Consensus 98 ~~vpl~~~~~A~~eF~~tg~rP~~v~ 123 (127)
T PF14430_consen 98 SEVPLETARQALREFLATGARPDCVE 123 (127)
T ss_pred ceecHHHHHHHHHHHHHhCCCCCCcc
Confidence 35678999999999999999999985
No 247
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=59.79 E-value=8 Score=29.70 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=24.5
Q ss_pred EeCCCCHhHHHHcCCCCCCeEEEEeCCEEe
Q 037669 35 IDINIERDLAYALKVKECPQILFLLGNRIL 64 (98)
Q Consensus 35 VDVDenpeLA~~y~V~SIPTLi~FKnGe~v 64 (98)
|-.|.+..|+++|||..+|+++. ++|..+
T Consensus 169 vYfdQ~g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 169 IYFDQHGKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred eEEcCCchHhhccCceeeceEEE-ecCCEE
Confidence 55688999999999999999885 777653
No 248
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=59.35 E-value=8.9 Score=25.30 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=39.9
Q ss_pred eCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 36 DINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 36 DVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
.+|+-.++|.+||..++.- +-+.+|+....+.=+++++++.+.++.+
T Consensus 27 ~id~l~~~ak~~ga~gL~~-ikv~~~~~~s~i~kfl~e~~~~~l~~~~ 73 (95)
T PF02938_consen 27 QIDKLEEFAKKFGAKGLAW-IKVEEGELKSPIAKFLSEEELKALIERL 73 (95)
T ss_dssp CCCCCCCHHHHCCHCHCCC-EEESTCEEECTTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCcee-eeEcCCcccCcccccCCHHHHHHHHHHh
Confidence 5677889999999999985 5677899988888899999999888765
No 249
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=57.69 E-value=19 Score=32.14 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=39.5
Q ss_pred CCCCeEEEEeC--CCCHhHHHHcCCCCCCeEEEEeCCEEe----EeeecccC----HHHHHHHHHHHhh
Q 037669 27 RLPPRAVKIDI--NIERDLAYALKVKECPQILFLLGNRIL----YREKEFRT----ADELVQMIAHFYY 85 (98)
Q Consensus 27 ~~~vkvvKVDV--DenpeLA~~y~V~SIPTLi~FKnGe~v----~r~~G~~~----keeL~~~L~~~~~ 85 (98)
.+=+++..||. ++|..|-..|+|++.|||-+|+-+-.- ....|... .+.|...|...++
T Consensus 90 ~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~ 158 (606)
T KOG1731|consen 90 RPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDA 158 (606)
T ss_pred cceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHh
Confidence 34488888886 568899999999999999999544222 22333333 3555555655555
No 250
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=57.06 E-value=37 Score=24.58 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCCCeEEEEeCCCCHh----HHHHcCC----CCCCeEEEEeCCEEeE
Q 037669 16 KAIQVYWSAKDRLPPRAVKIDINIERD----LAYALKV----KECPQILFLLGNRILY 65 (98)
Q Consensus 16 k~~~~~~~~~~~~~vkvvKVDVDenpe----LA~~y~V----~SIPTLi~FKnGe~v~ 65 (98)
+|-+++..+. +.+-.+||+.+++ |.+..+- .++|.++ -||+.+.
T Consensus 21 ~ak~iL~~~~----V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF--I~G~~IG 72 (147)
T cd03031 21 NVRAILESFR----VKFDERDVSMDSGFREELRELLGAELKAVSLPRVF--VDGRYLG 72 (147)
T ss_pred HHHHHHHHCC----CcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE--ECCEEEe
Confidence 4445555554 8899999988765 4444555 7888764 5776664
No 251
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=56.78 E-value=41 Score=23.92 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=41.7
Q ss_pred cchhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeeccc
Q 037669 3 RATKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFR 71 (98)
Q Consensus 3 ~~~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~ 71 (98)
|-.+-++++.+..+-+.-..... --.+++-++.++.+ ++|.+| .+-||+.+ ||..+...+|.-
T Consensus 17 RC~~Tg~~L~~av~~l~~~L~~~-Giev~l~~~~l~~~-~~~~~~--~~S~~I~i--nG~piE~~l~~~ 79 (120)
T PF10865_consen 17 RCGDTGETLREAVKELAPVLAPL-GIEVRLEEIELDEE-EFARQP--LESPTIRI--NGRPIEDLLGAE 79 (120)
T ss_pred chhhHHHHHHHHHHHHHHHHHhC-CcEEEEEEEECChH-HHhhcc--cCCCeeeE--CCEehhHhhCCc
Confidence 33444444444444444445443 45688899999884 789999 88899876 898887766654
No 252
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=56.51 E-value=44 Score=20.40 Aligned_cols=50 Identities=6% Similarity=-0.025 Sum_probs=28.3
Q ss_pred CCCeEEEEeCCC--CHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 28 LPPRAVKIDINI--ERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 28 ~~vkvvKVDVDe--npeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
.+..++.|+-++ .+++....+-..+|+|+.-.+|..++ ....|.+.|+..
T Consensus 25 i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~------es~~I~~yL~~~ 76 (77)
T cd03041 25 LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMF------ESADIVKYLFKT 76 (77)
T ss_pred CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEE------cHHHHHHHHHHh
Confidence 345554443332 24555555667999986544565444 455666666554
No 253
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=56.48 E-value=43 Score=20.28 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=41.6
Q ss_pred CCCCeEEEEeCCC-CHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHhhc
Q 037669 27 RLPPRAVKIDINI-ERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFYYK 86 (98)
Q Consensus 27 ~~~vkvvKVDVDe-npeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~~ 86 (98)
..+.++..||..+ .+++.....-..||+|. .||..++ ....|.+.|+..|-+
T Consensus 21 ~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~------dS~~I~~yL~~~~~~ 73 (75)
T PF13417_consen 21 GIPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT------DSAAIIEYLEERYPG 73 (75)
T ss_dssp TEEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE------SHHHHHHHHHHHSTS
T ss_pred CCeEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe------CHHHHHHHHHHHcCC
Confidence 4568888888776 47888889999999997 6788665 678888999888755
No 254
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=55.78 E-value=87 Score=23.66 Aligned_cols=77 Identities=12% Similarity=-0.054 Sum_probs=48.8
Q ss_pred HHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHH----cCCCCCC----------------eEEEEeCCEEeEee
Q 037669 8 WKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYA----LKVKECP----------------QILFLLGNRILYRE 67 (98)
Q Consensus 8 ~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~----y~V~SIP----------------TLi~FKnGe~v~r~ 67 (98)
.....+++....-|=.++ .-.+++--||.+.+|+.+++ |||..++ .+++ ..|.....+
T Consensus 42 ~~~~~~v~~lL~~y~~~s-~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~i 119 (271)
T PF09822_consen 42 SPLRKQVRDLLDEYARYS-PGKIKVEFIDPDENPSEAEEKAKEYGIQPVQIEIVDNGKASIVTVYGGIVV-EYGDREEVI 119 (271)
T ss_pred hHHHHHHHHHHHHHHHhC-CCceEEEEECCCCChHHHHHHHHhcCCCccceeecccccccceeecCeEEE-EECCeEEEe
Confidence 344555555555555443 22589999999999999888 9988744 3333 555444444
Q ss_pred ecccC------HHHHHHHHHHHhhc
Q 037669 68 KEFRT------ADELVQMIAHFYYK 86 (98)
Q Consensus 68 ~G~~~------keeL~~~L~~~~~~ 86 (98)
..+-. +.+|.+.|...--+
T Consensus 120 ~~~~~~~~~~~E~~lt~aI~~v~~~ 144 (271)
T PF09822_consen 120 PFLDSMSEFNLEYELTSAIRRVTSD 144 (271)
T ss_pred ecccccccccHHHHHHHHHHHHhcc
Confidence 44433 67777777776655
No 255
>PF02604 PhdYeFM_antitox: Antitoxin Phd_YefM, type II toxin-antitoxin system; InterPro: IPR006442 This entry is represented by Bacteriophage P1, prevent-host-death protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins is characterised by a region of about 55 amino acids toward the N-terminal end of bacterial proteins which are themselves only 85 amino acids, or thereabouts, in length. The best-characterised member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (IPR006440 from INTERPRO) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family. ; PDB: 3DBO_A 2ODK_B 3G5O_D 2A6Q_B 3D55_C 3OEI_E 3CTO_C 3K33_D 3KH2_F 3HS2_C ....
Probab=55.54 E-value=25 Score=21.37 Aligned_cols=30 Identities=3% Similarity=0.056 Sum_probs=22.2
Q ss_pred CeEEEEeCCEEeEeeecccCHHHHHHHHHH
Q 037669 53 PQILFLLGNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 53 PTLi~FKnGe~v~r~~G~~~keeL~~~L~~ 82 (98)
+.++|.+||+.+..++.+-..+.|.+....
T Consensus 25 ~pv~It~~g~~~~vli~~~~ye~l~~~~~~ 54 (75)
T PF02604_consen 25 EPVIITKNGKPVAVLISVEDYERLQELTEE 54 (75)
T ss_dssp -EEEEEETTEEEEEEEEHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCeecccHHHHHHHHHHHHH
Confidence 458999999999999887666666664333
No 256
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=54.64 E-value=5.3 Score=31.79 Aligned_cols=51 Identities=12% Similarity=0.063 Sum_probs=35.7
Q ss_pred CCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeeccc-------CHHHHHHHH
Q 037669 27 RLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFR-------TADELVQMI 80 (98)
Q Consensus 27 ~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~-------~keeL~~~L 80 (98)
-|.++|||+=.... ..-|-=..+|||++|..|.+....+|.. +.++++.+|
T Consensus 140 fp~iKFVki~at~c---IpNYPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L 197 (240)
T KOG3170|consen 140 FPQIKFVKIPATTC---IPNYPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFL 197 (240)
T ss_pred CCcceEEecccccc---cCCCcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHH
Confidence 46788888743221 1234457899999999999999999964 345665554
No 257
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=51.03 E-value=66 Score=26.83 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=39.9
Q ss_pred CCCeEEEEeCCEEe-EeeecccCHHHHHHHHHHHhhcCCCCCCCCcC
Q 037669 51 ECPQILFLLGNRIL-YREKEFRTADELVQMIAHFYYKARRPSWIDKT 96 (98)
Q Consensus 51 SIPTLi~FKnGe~v-~r~~G~~~keeL~~~L~~~~~~~~~p~~~~~~ 96 (98)
-.|++.+.++|+-. -|..|.=.-+|+-.+|..+|--+.+++-|++.
T Consensus 60 ~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l~~~ 106 (517)
T PRK15317 60 RKPSFSITRPGEDTGVRFAGIPMGHEFTSLVLALLQVGGHPPKLDQE 106 (517)
T ss_pred CCCEEEEEcCCccceEEEEecCccHHHHHHHHHHHHhcCCCCCCCHH
Confidence 47999999888654 68889999999999999999988889988864
No 258
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=50.74 E-value=40 Score=23.52 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=44.9
Q ss_pred HHHhhcCCCCCeEEEEe-CCCCHhHHHHcCCCCCCeEEEEeCCE-------EeEeeecccCHHHHHHHHHH
Q 037669 20 VYWSAKDRLPPRAVKID-INIERDLAYALKVKECPQILFLLGNR-------ILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 20 ~~~~~~~~~~vkvvKVD-VDenpeLA~~y~V~SIPTLi~FKnGe-------~v~r~~G~~~keeL~~~L~~ 82 (98)
..|... .-+..+++++ -++-.+|+++..-.++|+.++...|. ..--.+|..+++.+.+...+
T Consensus 42 ~~W~~~-G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~DAG~Tev~~gt~T~laigP~~~~~i~~itg~ 111 (115)
T cd02430 42 RAWERE-GQKKIVLKVNSEEELLELKKKAKSLGLPTSLIQDAGRTQIAPGTITVLGIGPAPEELIDKVTGH 111 (115)
T ss_pred HHHHhc-CCcEEEEecCCHHHHHHHHHHHHHcCCCeEEEEeCCCcccCCCCceEEEeCCCCHHHHHHhhCC
Confidence 458764 3444455774 45678899999999999999988884 34556788888888776554
No 259
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=50.56 E-value=21 Score=20.88 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCC
Q 037669 11 LKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKV 49 (98)
Q Consensus 11 ~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V 49 (98)
-+.|++||+.++.++ .| -...|..|||
T Consensus 2 ee~l~~Ai~~v~~g~--~S----------~r~AA~~ygV 28 (45)
T PF05225_consen 2 EEDLQKAIEAVKNGK--MS----------IRKAAKKYGV 28 (45)
T ss_dssp HHHHHHHHHHHHTTS--S-----------HHHHHHHHT-
T ss_pred HHHHHHHHHHHHhCC--CC----------HHHHHHHHCc
Confidence 467999999999663 22 3567777876
No 260
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=49.12 E-value=35 Score=26.37 Aligned_cols=31 Identities=3% Similarity=0.191 Sum_probs=25.9
Q ss_pred CeEEEEeCCEEeEeeecccCHHHHHHHHHHHhh
Q 037669 53 PQILFLLGNRILYREKEFRTADELVQMIAHFYY 85 (98)
Q Consensus 53 PTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~ 85 (98)
++.++|+-||++ .+|..+.+++...++.+.-
T Consensus 54 ~a~LIF~SGK~V--cTGaKs~ed~~~av~~~~~ 84 (185)
T COG2101 54 TAALIFRSGKVV--CTGAKSVEDVHRAVKKLAK 84 (185)
T ss_pred ceEEEEecCcEE--EeccCcHHHHHHHHHHHHH
Confidence 378899999998 5799999999888877653
No 261
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=47.65 E-value=34 Score=23.94 Aligned_cols=61 Identities=5% Similarity=-0.028 Sum_probs=43.8
Q ss_pred HHhhcCCCCCeEEEE-eCCCCHhHHHHcCCCCCCeEEEEeCCEE-------eEeeecccCHHHHHHHHHH
Q 037669 21 YWSAKDRLPPRAVKI-DINIERDLAYALKVKECPQILFLLGNRI-------LYREKEFRTADELVQMIAH 82 (98)
Q Consensus 21 ~~~~~~~~~vkvvKV-DVDenpeLA~~y~V~SIPTLi~FKnGe~-------v~r~~G~~~keeL~~~L~~ 82 (98)
-|.. +.-+--++|+ |-++-.+|+++..-.++|+.++-..|.- .--.+|..+++.+.+...+
T Consensus 43 ~W~~-~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v~DAG~Tei~pgs~TvlaigP~~~~~id~itg~ 111 (115)
T TIGR00283 43 KWLD-EGQKKVVLKVNSLEELLEIYHKAESLGLVTGLIRDAGHTQIPPGTITAVGIGPDEDEKIDKITGD 111 (115)
T ss_pred HHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEcCCcceeCCCCcEEEEECCCCHHHHHHHhCC
Confidence 4755 3444456666 5566778888888899999999887765 3455688888888776554
No 262
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=47.24 E-value=83 Score=20.90 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=35.4
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHc--------CCCCCCeEEEEeCCEEeEe
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYAL--------KVKECPQILFLLGNRILYR 66 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y--------~V~SIPTLi~FKnGe~v~r 66 (98)
+=+++++=+..-..+...+ +.+-.+||+.+++.-+.. |-.++|.+ |-+|+-++-
T Consensus 12 ~~~~k~~~~~v~~lL~~k~----I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQI--Fi~~~~iGg 73 (92)
T cd03030 12 STEIKKRQQEVLGFLEAKK----IEFEEVDISMNEENRQWMRENVPNENGKPLPPQI--FNGDEYCGD 73 (92)
T ss_pred cHHHHHHHHHHHHHHHHCC----CceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEE--EECCEEeeC
Confidence 3455555555555555443 889999999888876653 45677765 567777653
No 263
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=45.59 E-value=48 Score=23.35 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=29.3
Q ss_pred EEeCCCCHhHHHHcCCC-----------CCCeEEEEeCCEEeEeeecccC
Q 037669 34 KIDINIERDLAYALKVK-----------ECPQILFLLGNRILYREKEFRT 72 (98)
Q Consensus 34 KVDVDenpeLA~~y~V~-----------SIPTLi~FKnGe~v~r~~G~~~ 72 (98)
.+=.|.+.+++.+|||. +..+.++..+|++++..+...+
T Consensus 93 ~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~~~ 142 (155)
T cd03013 93 RFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVDDGKVKYLFVEEDP 142 (155)
T ss_pred EEEECCCHHHHHHcCCCccccccCCcceeeeEEEEECCCEEEEEEEecCC
Confidence 34457789999999994 2356677789999988776554
No 264
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=45.41 E-value=45 Score=21.49 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=35.6
Q ss_pred HhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHhhcCCCCCCCC
Q 037669 41 RDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFYYKARRPSWID 94 (98)
Q Consensus 41 peLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~~~~~p~~~~ 94 (98)
..+|.++||.+. +-=..||.+---..| ++++|+++++.+.-+ .+|+.++
T Consensus 24 ~~~A~~~gl~G~--V~N~~dg~V~i~~~G--~~~~l~~f~~~l~~g-~p~a~V~ 72 (91)
T PF00708_consen 24 KRIARKLGLTGW--VRNLPDGSVEIEAEG--EEEQLEEFIKWLKKG-PPPARVD 72 (91)
T ss_dssp HHHHHHTT-EEE--EEE-TTSEEEEEEEE--EHHHHHHHHHHHHHS-STTSEEE
T ss_pred HHHHHHhCCceE--EEECCCCEEEEEEEe--CHHHHHHHHHHHHhC-CCCcEEE
Confidence 367889998886 555678988888888 888899988888776 4445443
No 265
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=45.09 E-value=36 Score=22.24 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=23.8
Q ss_pred HcCCCCCCeEEEEe-CCEEeEeee-cccCHHHHHHHHHHHhh
Q 037669 46 ALKVKECPQILFLL-GNRILYREK-EFRTADELVQMIAHFYY 85 (98)
Q Consensus 46 ~y~V~SIPTLi~FK-nGe~v~r~~-G~~~keeL~~~L~~~~~ 85 (98)
+|-=-+-|+|+++. +|+++.++. .-.+.+++.++|.+..+
T Consensus 36 k~i~G~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kgf 77 (78)
T PF08806_consen 36 KYIPGAPPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKGF 77 (78)
T ss_dssp EEESS---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT-
T ss_pred EEeCCCCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhCC
Confidence 33334669999995 899887753 35588999999976543
No 266
>PRK10824 glutaredoxin-4; Provisional
Probab=44.99 E-value=56 Score=22.76 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=25.1
Q ss_pred CeEEEEeCCCCHhHHHH----cCCCCCCeEEEEeCCEEeEe
Q 037669 30 PRAVKIDINIERDLAYA----LKVKECPQILFLLGNRILYR 66 (98)
Q Consensus 30 vkvvKVDVDenpeLA~~----y~V~SIPTLi~FKnGe~v~r 66 (98)
+.+..+|+++++++... -|-.++|.+ |-||+-++-
T Consensus 45 i~~~~idi~~d~~~~~~l~~~sg~~TVPQI--FI~G~~IGG 83 (115)
T PRK10824 45 ERFAYVDILQNPDIRAELPKYANWPTFPQL--WVDGELVGG 83 (115)
T ss_pred CCceEEEecCCHHHHHHHHHHhCCCCCCeE--EECCEEEcC
Confidence 56667888888776554 466789975 668988754
No 267
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=44.78 E-value=40 Score=29.52 Aligned_cols=40 Identities=28% Similarity=0.525 Sum_probs=28.0
Q ss_pred eEEEEeCCEEeEeeeccc------CHHHHHHHHHHHhhcCCCCCCC
Q 037669 54 QILFLLGNRILYREKEFR------TADELVQMIAHFYYKARRPSWI 93 (98)
Q Consensus 54 TLi~FKnGe~v~r~~G~~------~keeL~~~L~~~~~~~~~p~~~ 93 (98)
.++++++|+++.+..=+. ..+.|.++|..||.+...|+.+
T Consensus 265 ~v~~iR~G~l~~~~~~~~~~~~~~~~e~l~~fl~q~Y~~~~~P~~i 310 (598)
T PRK00558 265 QVFFVRGGKLLGRRSYFPKVSETELEEILEAFLGQFYLQKSIPKEI 310 (598)
T ss_pred EEEEEECCEEecceeeeccCCCCCHHHHHHHHHHHHhcCCCCCCEe
Confidence 677889999999854433 3566778888888654456543
No 268
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=44.20 E-value=18 Score=20.32 Aligned_cols=37 Identities=3% Similarity=0.052 Sum_probs=25.9
Q ss_pred hHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHH
Q 037669 42 DLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 42 eLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~ 81 (98)
+..+.+.=.++..+.+..++ .+..|.++..+|.+.+.
T Consensus 20 ~~~~~~~~~~~~~~~V~d~~---~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 20 EALEIMRKNGISRLPVVDED---GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHHHHHHTSSEEEEESTT---SBEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEEecC---CEEEEEEEHHHHHhhhh
Confidence 34444444457777788444 77889999999998874
No 269
>PTZ00062 glutaredoxin; Provisional
Probab=44.19 E-value=70 Score=24.32 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCCCeEEEEeCCCCHhHHHH----cCCCCCCeEEEEeCCEEeE
Q 037669 16 KAIQVYWSAKDRLPPRAVKIDINIERDLAYA----LKVKECPQILFLLGNRILY 65 (98)
Q Consensus 16 k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~----y~V~SIPTLi~FKnGe~v~ 65 (98)
++.+.+=+.+ +.+..+||++++++.+. .|-.++|.+. -||+.++
T Consensus 133 ~~k~~L~~~~----i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf--I~G~~IG 180 (204)
T PTZ00062 133 AVVNMLNSSG----VKYETYNIFEDPDLREELKVYSNWPTYPQLY--VNGELIG 180 (204)
T ss_pred HHHHHHHHcC----CCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--ECCEEEc
Confidence 3444444444 78888999998876554 4566888764 5787763
No 270
>CHL00030 rpl23 ribosomal protein L23
Probab=44.16 E-value=30 Score=23.55 Aligned_cols=28 Identities=11% Similarity=0.286 Sum_probs=22.3
Q ss_pred HhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHh
Q 037669 9 KTLKELEKAIQVYWSAKDRLPPRAVKIDINIERD 42 (98)
Q Consensus 9 ~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpe 42 (98)
-++.|+-+|++.++ . +++.+||+---+.
T Consensus 30 anK~eIK~avE~lf-~-----VkV~~VNt~~~~~ 57 (93)
T CHL00030 30 STKTEIKHWIELFF-G-----VKVIAVNSHRLPR 57 (93)
T ss_pred CCHHHHHHHHHHHh-C-----CeEEEEEEEEcCC
Confidence 46889999999998 3 8999999854444
No 271
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=42.13 E-value=50 Score=21.67 Aligned_cols=60 Identities=22% Similarity=0.127 Sum_probs=34.2
Q ss_pred HHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeeccc
Q 037669 8 WKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFR 71 (98)
Q Consensus 8 ~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~ 71 (98)
-..+++|.+..+.+- ...+.++-|+.|....+..-..-..+|--++......+.+..|+.
T Consensus 40 ~~~~~~l~~~~~~~~----~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~ 99 (149)
T cd02970 40 REYLRALSKLLPELD----ALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLV 99 (149)
T ss_pred HHHHHHHHHHHHHHH----hcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCce
Confidence 334444444444443 345999999999877664333333444445555555566666754
No 272
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=41.82 E-value=23 Score=27.38 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=24.6
Q ss_pred EeCCCCHhHHHHcCCCCCCeEEE-EeCCEEe
Q 037669 35 IDINIERDLAYALKVKECPQILF-LLGNRIL 64 (98)
Q Consensus 35 VDVDenpeLA~~y~V~SIPTLi~-FKnGe~v 64 (98)
|-.|.+..|+++|||..+|+++- -++|+.+
T Consensus 167 vYfdQ~G~Lt~rF~I~~VPAvV~~~q~G~~l 197 (209)
T PRK13738 167 IYFDQNGVLCQRFGIDQVPARVSAVPGGRFL 197 (209)
T ss_pred eEEcCcchHHHhcCCeeeceEEEEcCCCCEE
Confidence 45688889999999999999985 2777763
No 273
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=40.83 E-value=31 Score=23.42 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=24.0
Q ss_pred EEeEeeecccCHHHHHHHHHHHhhcCCCCCCCCc
Q 037669 62 RILYREKEFRTADELVQMIAHFYYKARRPSWIDK 95 (98)
Q Consensus 62 e~v~r~~G~~~keeL~~~L~~~~~~~~~p~~~~~ 95 (98)
..+.+.....+-++..+.|...+.+ .+||||..
T Consensus 85 I~~~~~~~~~~v~eal~~l~~~~~~-~~~~w~~~ 117 (119)
T TIGR02663 85 IHPIKVNEPESISELLERLQKMLKG-NPPPWLRK 117 (119)
T ss_pred CeeEecCCCccHHHHHHHHHHHHcC-CCCHHHHh
Confidence 3444333334678999999999988 89999864
No 274
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=40.77 E-value=52 Score=25.72 Aligned_cols=29 Identities=14% Similarity=0.382 Sum_probs=26.2
Q ss_pred eEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 54 QILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 54 TLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
+|.+|-.|+++ .+|..+.+++.+.++++|
T Consensus 161 ~l~IF~tG~Vv--vtgA~~~~~i~~Ai~~Iy 189 (200)
T KOG3302|consen 161 VLLIFVTGKVV--VTGAKVREETYEAIENIY 189 (200)
T ss_pred EEEEecCCEEE--EEecccHHHHHHHHHHHh
Confidence 67899999997 689999999999999887
No 275
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=40.52 E-value=23 Score=27.24 Aligned_cols=31 Identities=19% Similarity=0.622 Sum_probs=17.7
Q ss_pred EEeCCCCHhHHHHcCCCCCCeEEEE--eCCEEeEeeec
Q 037669 34 KIDINIERDLAYALKVKECPQILFL--LGNRILYREKE 69 (98)
Q Consensus 34 KVDVDenpeLA~~y~V~SIPTLi~F--KnGe~v~r~~G 69 (98)
|++|.--+++. +..|||+++ ++|+++||+--
T Consensus 60 kL~i~~P~~~~-----ln~ptL~~IYD~~G~lLW~qr~ 92 (180)
T PF08918_consen 60 KLTIEVPPNLD-----LNSPTLVLIYDENGKLLWRQRD 92 (180)
T ss_dssp CEEE---TTHH-----TT-SEEEEEEETTS-EEEESS-
T ss_pred eeEEeCCCccC-----CCCCeEEEEEcCCCcEEEecCc
Confidence 45554444443 467998776 89999999753
No 276
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=39.97 E-value=29 Score=31.09 Aligned_cols=58 Identities=12% Similarity=-0.084 Sum_probs=47.1
Q ss_pred CCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHhhc
Q 037669 28 LPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFYYK 86 (98)
Q Consensus 28 ~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~~ 86 (98)
+.+.+..+=.+++--++. +++...|+.++|+||+...=..---+.+...+.|+.++++
T Consensus 214 ~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~ 271 (606)
T KOG1731|consen 214 KQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGD 271 (606)
T ss_pred CCcceEEEecchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhcC
Confidence 445666666666666677 9999999999999999987777777888888999998886
No 277
>PF14332 DUF4388: Domain of unknown function (DUF4388)
Probab=39.83 E-value=45 Score=21.27 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=13.5
Q ss_pred EEEeCCEEeEeeec
Q 037669 56 LFLLGNRILYREKE 69 (98)
Q Consensus 56 i~FKnGe~v~r~~G 69 (98)
++|++|++++-..|
T Consensus 36 i~f~~G~iv~A~~~ 49 (103)
T PF14332_consen 36 IYFRDGRIVHASSG 49 (103)
T ss_pred EEEECCEEEEEEeC
Confidence 99999999999999
No 278
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=38.83 E-value=71 Score=20.06 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=25.0
Q ss_pred CCCeEEEEeCCEEeEeee---cccCHHHHHHHHHHH
Q 037669 51 ECPQILFLLGNRILYREK---EFRTADELVQMIAHF 83 (98)
Q Consensus 51 SIPTLi~FKnGe~v~r~~---G~~~keeL~~~L~~~ 83 (98)
+--++-++-||+++|+.. |+-+.++|.+.|+.+
T Consensus 41 ~~G~FEV~v~g~lI~SK~~~g~fP~~~~i~~~I~~~ 76 (76)
T PF10262_consen 41 STGAFEVTVNGELIFSKLESGRFPDPDEIVQLIRDH 76 (76)
T ss_dssp STT-EEEEETTEEEEEHHHHTSSS-HHHHHHHHHHH
T ss_pred cCCEEEEEEccEEEEEehhcCCCCCHHHHHHHHhcC
Confidence 445688899999999765 788889999988764
No 279
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=38.49 E-value=84 Score=18.47 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=23.1
Q ss_pred HHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEe
Q 037669 21 YWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRIL 64 (98)
Q Consensus 21 ~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v 64 (98)
++..+ ..+...+.+|.++....-+..+-..+|+|+ ..+|..+
T Consensus 18 ~L~~~-gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~-~~~~~~l 59 (71)
T cd03037 18 IAGLK-NIPVEQIILQNDDEATPIRMIGAKQVPILE-KDDGSFM 59 (71)
T ss_pred HHHHc-CCCeEEEECCCCchHHHHHhcCCCccCEEE-eCCCeEe
Confidence 33344 445666666655433333445556899984 3446543
No 280
>PF14285 DUF4367: Domain of unknown function (DUF4367)
Probab=38.45 E-value=58 Score=22.29 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=22.1
Q ss_pred EEEEeCCEEeEee-ecccCHHHHHHHHHH
Q 037669 55 ILFLLGNRILYRE-KEFRTADELVQMIAH 82 (98)
Q Consensus 55 Li~FKnGe~v~r~-~G~~~keeL~~~L~~ 82 (98)
.+.+.++.....+ .|-++++||.+..+.
T Consensus 139 ~l~W~~~~~~~~i~~g~i~~eElikIaes 167 (168)
T PF14285_consen 139 SLMWEDDGYYYQIFSGNISKEELIKIAES 167 (168)
T ss_pred EEEEEECCEEEEEEeCCCCHHHHHHHHhc
Confidence 3666666677777 799999999998764
No 281
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=37.99 E-value=45 Score=23.48 Aligned_cols=67 Identities=13% Similarity=0.280 Sum_probs=46.2
Q ss_pred HhHHHHHHHHHHHHhhcCCCCCeEEEEe---CCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccC-HHHHHHHHHHHh
Q 037669 9 KTLKELEKAIQVYWSAKDRLPPRAVKID---INIERDLAYALKVKECPQILFLLGNRILYREKEFRT-ADELVQMIAHFY 84 (98)
Q Consensus 9 ~~~~el~k~~~~~~~~~~~~~vkvvKVD---VDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~-keeL~~~L~~~~ 84 (98)
.+..|++++++.+...+ .+-++=|+ .+.-+++-.+|+ ..+|+++..=+.+ .|+.+ ++.+.+.++.+|
T Consensus 43 t~~eei~~~~~~~l~~~---digIIlIte~~a~~i~~~I~~~~-~~~PaIieIP~k~-----~~y~~~~d~i~~~~~~~~ 113 (115)
T TIGR01101 43 TTVSEIEDCFNRFLKRD---DIAIILINQHIAEMIRHAVDAHT-RSIPAVLEIPSKD-----HPYDASKDSILRRARGMF 113 (115)
T ss_pred CCHHHHHHHHHHHhhcC---CeEEEEEcHHHHHHhHHHHHhcC-CcCCEEEEECCCC-----CCCCCcccHHHHHHHHHc
Confidence 45688999999877543 34444443 455678888899 9999999986632 55555 577777776664
No 282
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=36.03 E-value=80 Score=20.57 Aligned_cols=36 Identities=3% Similarity=-0.032 Sum_probs=25.7
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAY 45 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~ 45 (98)
-|-...++|.++.+.+-.. .+.++-|.+|....+.+
T Consensus 37 ~C~~~~~~l~~~~~~~~~~----~~~~i~is~d~~~~~~~ 72 (140)
T cd02971 37 VCTTELCAFRDLAEEFAKG----GAEVLGVSVDSPFSHKA 72 (140)
T ss_pred cCHHHHHHHHHHHHHHHHC----CCEEEEEeCCCHHHHHH
Confidence 3566688888888877433 49999999986554443
No 283
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=36.01 E-value=26 Score=24.80 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=25.5
Q ss_pred EEeCCCCHhHHHHcCCCCCCeEEEE-eCCEEeEeee
Q 037669 34 KIDINIERDLAYALKVKECPQILFL-LGNRILYREK 68 (98)
Q Consensus 34 KVDVDenpeLA~~y~V~SIPTLi~F-KnGe~v~r~~ 68 (98)
.+..+.-.+|-.+-.++++|+|-++ ++|+++-+..
T Consensus 5 ~L~~edl~ql~kas~~l~l~dl~~~~~~gkivv~~~ 40 (112)
T PF09116_consen 5 ELKAEDLQQLMKASRTLGLPDLCFVNDDGKIVVTDF 40 (112)
T ss_dssp EE-HHHHHHHHHHHHHCT--EEEEEEETTEEEEEEE
T ss_pred EecHHHHHHHHHHHHhcCCCeEEEEecCCEEEEEcc
Confidence 3455566778888888999999999 8899888874
No 284
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=35.97 E-value=41 Score=20.68 Aligned_cols=44 Identities=7% Similarity=0.053 Sum_probs=31.9
Q ss_pred eEEEEeCCCC-HhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHH
Q 037669 31 RAVKIDINIE-RDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQ 78 (98)
Q Consensus 31 kvvKVDVDen-peLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~ 78 (98)
.+..|+.+.. .+++..+.-...+.+.+.++| +..|+++..++.+
T Consensus 66 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~----~~~G~it~~dl~~ 110 (111)
T cd04589 66 PLITVDPDDFLFNALLLMTRHRIHRVVVREGG----EVVGVLEQTDLLS 110 (111)
T ss_pred CcEEECCCCcHHHHHHHHHHhCccEEEEeeCC----EEEEEEEhHHhhc
Confidence 4556677765 456677777788888887775 5689999888764
No 285
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=35.83 E-value=47 Score=21.82 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=20.9
Q ss_pred HHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCC
Q 037669 8 WKTLKELEKAIQVYWSAKDRLPPRAVKIDINI 39 (98)
Q Consensus 8 ~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDe 39 (98)
..++.|+.+|++.++ + +++.+||+--
T Consensus 24 ~anK~eIK~avE~lf--~----VkV~~Vnt~~ 49 (77)
T TIGR03636 24 KATKGDIKRAVEKLF--D----VKVEKVNTLI 49 (77)
T ss_pred CCCHHHHHHHHHHHh--C----CceEEEEeEE
Confidence 357899999999998 3 8899998733
No 286
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=35.80 E-value=93 Score=18.18 Aligned_cols=37 Identities=8% Similarity=0.137 Sum_probs=26.2
Q ss_pred CCCCeEEEEeCCC----CHhHHHHcCCCCCCeEEEEeCCEEeE
Q 037669 27 RLPPRAVKIDINI----ERDLAYALKVKECPQILFLLGNRILY 65 (98)
Q Consensus 27 ~~~vkvvKVDVDe----npeLA~~y~V~SIPTLi~FKnGe~v~ 65 (98)
..+...+.+|..+ .+++.+......+|+|.. +|..++
T Consensus 23 gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~ 63 (74)
T cd03045 23 GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFVLW 63 (74)
T ss_pred CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEEEE
Confidence 4567888887644 378888877889999963 565443
No 287
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=35.34 E-value=98 Score=18.30 Aligned_cols=38 Identities=8% Similarity=0.151 Sum_probs=27.2
Q ss_pred CCCCeEEEEeCCC-CHhHHHHcCCCCCCeEEEEeCCEEeE
Q 037669 27 RLPPRAVKIDINI-ERDLAYALKVKECPQILFLLGNRILY 65 (98)
Q Consensus 27 ~~~vkvvKVDVDe-npeLA~~y~V~SIPTLi~FKnGe~v~ 65 (98)
..+..++.||... .+++.+-.....+|+|. ..||..+.
T Consensus 23 gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~-~~~g~~l~ 61 (71)
T cd03060 23 GITVELREVELKNKPAEMLAASPKGTVPVLV-LGNGTVIE 61 (71)
T ss_pred CCCcEEEEeCCCCCCHHHHHHCCCCCCCEEE-ECCCcEEe
Confidence 4467888887654 46787888889999995 34576654
No 288
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=35.33 E-value=71 Score=18.93 Aligned_cols=30 Identities=7% Similarity=0.071 Sum_probs=25.1
Q ss_pred eCCEEeEeeecccCHHHHHHHHHHHhhcCC
Q 037669 59 LGNRILYREKEFRTADELVQMIAHFYYKAR 88 (98)
Q Consensus 59 KnGe~v~r~~G~~~keeL~~~L~~~~~~~~ 88 (98)
.||+++.+..|+-++..-++-|+.+=-+|.
T Consensus 13 ~ng~viasse~Y~sk~~a~~~I~~Vk~~a~ 42 (49)
T PF07411_consen 13 GNGEVIASSEGYSSKADAEKGIESVKKNAP 42 (49)
T ss_dssp TTS-EEEEBEEBSSHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEecCCcCCHHHHHHHHHHHHHhCC
Confidence 699999999999999999999988765543
No 289
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=35.19 E-value=1e+02 Score=20.36 Aligned_cols=35 Identities=3% Similarity=0.002 Sum_probs=28.0
Q ss_pred CCeEEEEe--CCEEeEeeecccCHHHHHHHHHHHhhcCCCC
Q 037669 52 CPQILFLL--GNRILYREKEFRTADELVQMIAHFYYKARRP 90 (98)
Q Consensus 52 IPTLi~FK--nGe~v~r~~G~~~keeL~~~L~~~~~~~~~p 90 (98)
=|++++|- +|. ..|..+.+++...++.++-++..-
T Consensus 53 gp~vvvyP~~~g~----wy~~v~p~~v~~Iv~~hl~~g~~v 89 (97)
T cd03062 53 AGNVIIYPKGDGI----WYGRVTPEHVPPIVDRLILGGKII 89 (97)
T ss_pred CCEEEEEeCCCee----EEeecCHHHHHHHHHHHhcCCcCC
Confidence 59999999 554 457789999999999999885543
No 290
>PRK07883 hypothetical protein; Validated
Probab=34.56 E-value=74 Score=27.53 Aligned_cols=33 Identities=9% Similarity=-0.010 Sum_probs=24.1
Q ss_pred eEEEEeCCEEeEeeeccc---CHHHHHHHHHHHhhc
Q 037669 54 QILFLLGNRILYREKEFR---TADELVQMIAHFYYK 86 (98)
Q Consensus 54 TLi~FKnGe~v~r~~G~~---~keeL~~~L~~~~~~ 86 (98)
.++++++|+++.+..=+. +.+.|.++|..||..
T Consensus 468 ~~~~vr~G~~~~~~~~~~~~~~~~~~~~fl~~~y~~ 503 (557)
T PRK07883 468 ELAVVRHGRLAAAGVAPRGVPPMPVVDALVATAETV 503 (557)
T ss_pred EEEEEECCEEccceeEecCCChHHHHHHHHHHhhcc
Confidence 788889999999877544 355666777777653
No 291
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=34.45 E-value=1e+02 Score=18.31 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=34.2
Q ss_pred CCCCeEEEEeCCC----CHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 27 RLPPRAVKIDINI----ERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 27 ~~~vkvvKVDVDe----npeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
..+.++..+|..+ .+++.....-..+|+|.. .+|..+ .....|.+.|++.
T Consensus 22 ~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~-~~g~~l------~eS~aI~~yL~~~ 75 (77)
T cd03057 22 GLPFELVRVDLRTKTQKGADYLAINPKGQVPALVL-DDGEVL------TESAAILQYLADL 75 (77)
T ss_pred CCCceEEEEecccCccCCHhHHHhCCCCCCCEEEE-CCCcEE------EcHHHHHHHHHHh
Confidence 4568888888865 578888888889999865 336543 3445566666543
No 292
>PF14466 DUF4425: Domain of unknown function (DUF4425) ; PDB: 2LGE_A 2LG7_A 3U6G_B 2LRG_A.
Probab=33.94 E-value=42 Score=24.33 Aligned_cols=14 Identities=7% Similarity=0.328 Sum_probs=11.0
Q ss_pred eEEEEeCCEEeEee
Q 037669 54 QILFLLGNRILYRE 67 (98)
Q Consensus 54 TLi~FKnGe~v~r~ 67 (98)
|++.|+|||+++|.
T Consensus 108 ~V~~y~DgkEV~~~ 121 (121)
T PF14466_consen 108 TVIAYIDGKEVNRQ 121 (121)
T ss_dssp EEEEEETTCEEEEE
T ss_pred EEEEEeCchhhhcC
Confidence 45569999999874
No 293
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=33.81 E-value=54 Score=23.16 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=28.3
Q ss_pred HHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 44 AYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 44 A~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
+-+|++.---.=++|.+|+++|+.-|--+=..|...+..+
T Consensus 16 ~lryk~~va~hgflfddg~~vw~e~~d~~w~rl~~vv~al 55 (111)
T PF02484_consen 16 ALRYKNEVARHGFLFDDGDIVWSEDDDETWNRLCDVVNAL 55 (111)
T ss_pred HHHHHhhccccceEecCCcEEEecCChHHHHHHHHHHHHH
Confidence 3456666666668999999999999876666665554443
No 294
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=33.51 E-value=69 Score=28.11 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=27.5
Q ss_pred CeEEEEeCCEEeEeeecc--------cCHHHHHHHHHHHhhcCCCCCC
Q 037669 53 PQILFLLGNRILYREKEF--------RTADELVQMIAHFYYKARRPSW 92 (98)
Q Consensus 53 PTLi~FKnGe~v~r~~G~--------~~keeL~~~L~~~~~~~~~p~~ 92 (98)
=+++++++|+++.+..=+ -..+.|.++|..||-+..-|+.
T Consensus 264 i~v~~vR~G~l~~~~~~~~~~~~~~~~~~e~l~~fl~q~Y~~~~~P~~ 311 (577)
T PRK14668 264 VARLHAEGGQLVDRDRHRLEAPDGEDRGAAVLAAFIVQYYAERELPDA 311 (577)
T ss_pred EEEEEEECCEEecceeEEecCCCCCCCHHHHHHHHHHHHHhcCCCCCE
Confidence 367788999999984422 2347788888888865445553
No 295
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=33.12 E-value=83 Score=28.00 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=26.2
Q ss_pred CeEEEEeCCEEeEeeeccc-------------CHHHHHHHHHHHhhcCC-CCCC
Q 037669 53 PQILFLLGNRILYREKEFR-------------TADELVQMIAHFYYKAR-RPSW 92 (98)
Q Consensus 53 PTLi~FKnGe~v~r~~G~~-------------~keeL~~~L~~~~~~~~-~p~~ 92 (98)
=+++++++|+++++..=+. ..+.|.++|..||-+.. .|+.
T Consensus 265 v~vf~iR~G~l~~~~~~~~~~~~~~~~~~~~~~~e~l~~fl~qyY~~~~~~P~~ 318 (624)
T PRK14669 265 VNLFHMRGGKIVDRREFFWEDLGEVQVEFEYDEGLFFSSLLKQIYLDQQYVPRE 318 (624)
T ss_pred EEEEEEECCEEecceEEEeccccccccccCCCHHHHHHHHHHHHHhcCCCCCCE
Confidence 3577889999999854322 25667778888886433 3443
No 296
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=32.71 E-value=56 Score=19.99 Aligned_cols=43 Identities=7% Similarity=0.129 Sum_probs=31.4
Q ss_pred EEEEeCCCC-HhHHHHcCCCCCCeEEEEeC-CEEeEeeecccCHHHHHH
Q 037669 32 AVKIDINIE-RDLAYALKVKECPQILFLLG-NRILYREKEFRTADELVQ 78 (98)
Q Consensus 32 vvKVDVDen-peLA~~y~V~SIPTLi~FKn-Ge~v~r~~G~~~keeL~~ 78 (98)
+..++.+.+ .++.+.+.-.++|-+.+..+ |+ .+|+++..++.+
T Consensus 66 ~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~----~~Gvit~~di~~ 110 (111)
T cd04590 66 PLFVPESTPLDDLLEEMRKERSHMAIVVDEYGG----TAGLVTLEDILE 110 (111)
T ss_pred CeecCCCCcHHHHHHHHHhcCCcEEEEEECCCC----EEEEeEHHHhhc
Confidence 345666665 56777777778899888854 65 689998888753
No 297
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=32.15 E-value=1.3e+02 Score=18.83 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=29.8
Q ss_pred HHHHHHhhcCCCCCeEEEEeCCCC-HhHHHHcCCCCCCeEEEEeCCEEeE
Q 037669 17 AIQVYWSAKDRLPPRAVKIDINIE-RDLAYALKVKECPQILFLLGNRILY 65 (98)
Q Consensus 17 ~~~~~~~~~~~~~vkvvKVDVDen-peLA~~y~V~SIPTLi~FKnGe~v~ 65 (98)
+--++.+. ..+.+++.+|.+.. +++.+......+|+|.. .+|..++
T Consensus 33 v~~~L~~~--gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~-~~g~~l~ 79 (89)
T cd03055 33 ARLVLAAK--NIPHEVININLKDKPDWFLEKNPQGKVPALEI-DEGKVVY 79 (89)
T ss_pred HHHHHHHc--CCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE-CCCCEEE
Confidence 33344433 45688888887654 45777778889999974 2365544
No 298
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.66 E-value=52 Score=25.87 Aligned_cols=38 Identities=24% Similarity=0.487 Sum_probs=28.5
Q ss_pred HHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHhhcCCCCCC
Q 037669 45 YALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFYYKARRPSW 92 (98)
Q Consensus 45 ~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~~~~~p~~ 92 (98)
..|-|.+-||++. +-|+++.|| ++.+..+.++|.+|-|
T Consensus 4 ~~F~V~~~pt~~Y---------IPnfIt~EE-e~~~lshIe~ap~pkW 41 (224)
T KOG3200|consen 4 KKFIVKSAPTMIY---------IPNFITEEE-ENLYLSHIENAPQPKW 41 (224)
T ss_pred ceeEecccceEEE---------cCCccChHH-HHHHHHHHhcCCCchh
Confidence 4678899999865 467888877 4555667788888876
No 299
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=31.59 E-value=30 Score=23.10 Aligned_cols=11 Identities=0% Similarity=0.259 Sum_probs=8.6
Q ss_pred eEEEEeCCEEe
Q 037669 54 QILFLLGNRIL 64 (98)
Q Consensus 54 TLi~FKnGe~v 64 (98)
|+-+||||++-
T Consensus 17 tvyiFKDGKMa 27 (73)
T PF11525_consen 17 TVYIFKDGKMA 27 (73)
T ss_dssp EEEEETTS-EE
T ss_pred EEEEEcCCcee
Confidence 89999999874
No 300
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=31.53 E-value=92 Score=16.86 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCCCCCeEEEEeCCCCHh--HHHHcCCCCCCeEEEEeCCEEeE
Q 037669 16 KAIQVYWSAKDRLPPRAVKIDINIERD--LAYALKVKECPQILFLLGNRILY 65 (98)
Q Consensus 16 k~~~~~~~~~~~~~vkvvKVDVDenpe--LA~~y~V~SIPTLi~FKnGe~v~ 65 (98)
|+.-.+. .+ ..+.++..++.++... +-...+-..+|+|.. +|..+.
T Consensus 14 ~~~~~l~-~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~~~ 61 (71)
T cd00570 14 RVRLALE-EK-GLPYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLVLT 61 (71)
T ss_pred HHHHHHH-Hc-CCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEEEE
Confidence 3333444 33 4567777777665443 566788889998864 465543
No 301
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=31.29 E-value=1.9e+02 Score=20.33 Aligned_cols=44 Identities=9% Similarity=0.106 Sum_probs=29.7
Q ss_pred HHHHhhcCCCCCeEEEEeC-C----CCHhHHHHcCCCCCCeEEEEeCCEEeE
Q 037669 19 QVYWSAKDRLPPRAVKIDI-N----IERDLAYALKVKECPQILFLLGNRILY 65 (98)
Q Consensus 19 ~~~~~~~~~~~vkvvKVDV-D----enpeLA~~y~V~SIPTLi~FKnGe~v~ 65 (98)
.++.+++ ..+.+...||. + ..+++..-.--..+|+|+. +|..++
T Consensus 15 ~~~l~~~-gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ 63 (210)
T TIGR01262 15 RIALALK-GIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDI--DGEVLT 63 (210)
T ss_pred HHHHHHC-CCCceEEecccccccccCChhhhhcCCCCcCCEEEE--CCEEee
Confidence 3444454 45688888886 2 2466777666779999975 887665
No 302
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=31.02 E-value=91 Score=24.12 Aligned_cols=29 Identities=7% Similarity=0.213 Sum_probs=25.4
Q ss_pred EEEEeCCEEeEeeecccCHHHHHHHHHHHhh
Q 037669 55 ILFLLGNRILYREKEFRTADELVQMIAHFYY 85 (98)
Q Consensus 55 Li~FKnGe~v~r~~G~~~keeL~~~L~~~~~ 85 (98)
+++|-.||+| .+|..+.++..+.++.++-
T Consensus 149 ~LiF~SGK~V--iTGaK~~ed~~~Av~~i~~ 177 (185)
T COG2101 149 LLLFGSGKLV--ITGAKSEEDAEQAVEKIQS 177 (185)
T ss_pred EEEecCCcEE--EecCCCHHHHHHHHHHHHH
Confidence 5689999998 6899999999999988764
No 303
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=30.72 E-value=31 Score=23.15 Aligned_cols=74 Identities=22% Similarity=0.175 Sum_probs=46.7
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeCCCCH----hHHHHcCCCCCCeEEEEeCCEEeEeeeccc------CHHHHHHHHHHHh
Q 037669 15 EKAIQVYWSAKDRLPPRAVKIDINIER----DLAYALKVKECPQILFLLGNRILYREKEFR------TADELVQMIAHFY 84 (98)
Q Consensus 15 ~k~~~~~~~~~~~~~vkvvKVDVDenp----eLA~~y~V~SIPTLi~FKnGe~v~r~~G~~------~keeL~~~L~~~~ 84 (98)
.||.+.+-++. +.+-.+|+.+++ +|..-.+-.++|.--++.-....|+..|.- +.+++.++|..+-
T Consensus 13 ~ka~~~L~~~~----i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~s~~e~~~~l~~~p 88 (111)
T cd03036 13 RKAKKWLDEHG----VDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLPSLSEEEALELLSSDG 88 (111)
T ss_pred HHHHHHHHHcC----CceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccccCCHHHHHHHHHhCc
Confidence 35566665554 778888887765 334444455667766775555577776654 5577888887665
Q ss_pred hcCCCCCC
Q 037669 85 YKARRPSW 92 (98)
Q Consensus 85 ~~~~~p~~ 92 (98)
-==+||=-
T Consensus 89 ~LikRPIi 96 (111)
T cd03036 89 MLIKRPFV 96 (111)
T ss_pred CeeeCCEE
Confidence 44456643
No 304
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=30.60 E-value=87 Score=27.59 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=23.9
Q ss_pred CeEEEEeCCEEeEeeeccc-----CHHHHHHHHHHHhh
Q 037669 53 PQILFLLGNRILYREKEFR-----TADELVQMIAHFYY 85 (98)
Q Consensus 53 PTLi~FKnGe~v~r~~G~~-----~keeL~~~L~~~~~ 85 (98)
=+++++++|+++++..-+. ..+.|.++|..||-
T Consensus 239 v~v~~iR~G~l~~~~~~~~~~~~~~~e~l~~fl~qyY~ 276 (574)
T PRK14670 239 IVILKYKDGKLVEKDINFDESIYEEDELILQFITQYYT 276 (574)
T ss_pred EEEEEEECCEEecceeeecCCCCCHHHHHHHHHHHHHh
Confidence 3577789999999853332 46677778888875
No 305
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=30.14 E-value=82 Score=26.54 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=27.9
Q ss_pred cCCC-CCC-eEEEEeCCEEeEee-ecccCHHHHHHHHHHH
Q 037669 47 LKVK-ECP-QILFLLGNRILYRE-KEFRTADELVQMIAHF 83 (98)
Q Consensus 47 y~V~-SIP-TLi~FKnGe~v~r~-~G~~~keeL~~~L~~~ 83 (98)
|||- +=| -.++|++|+.+.+. ..-.--++|.+.|+.+
T Consensus 319 ~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 319 IGIAGGGKGKGILFKKGEVVKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp EEEE-E-TTCEEEECTTEEEEEE-CSTCHHHHHHHHHHHH
T ss_pred eeeecCCCCeEEEEECCEEEEecCCHHHHHHHHHHHHHhh
Confidence 5555 333 38999999999998 7777778888888765
No 306
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=30.00 E-value=1e+02 Score=27.08 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=23.3
Q ss_pred eEEEEeCCEEeEeeec------ccCHHHHHHHHHHHhhc
Q 037669 54 QILFLLGNRILYREKE------FRTADELVQMIAHFYYK 86 (98)
Q Consensus 54 TLi~FKnGe~v~r~~G------~~~keeL~~~L~~~~~~ 86 (98)
.++++++|+++.+..= .-+.+.|.++|..||-+
T Consensus 257 ~v~~vR~G~l~~~~~~~~~~~~~~~~e~l~~fl~q~Y~~ 295 (574)
T TIGR00194 257 QVFFIRQGKLIGRDQFDFSLPGTDLDELVETFLIQFYQQ 295 (574)
T ss_pred EEEEEECCEEecceeeEecCCCCCHHHHHHHHHHHHHhc
Confidence 5677799999998622 12466777788888753
No 307
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=29.62 E-value=83 Score=26.61 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=46.7
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeE----EEEeCCCCHhHHHHcCCCC--CCeEEEEeCCEEeEeeecccCHHHHHHHH
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRA----VKIDINIERDLAYALKVKE--CPQILFLLGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkv----vKVDVDenpeLA~~y~V~S--IPTLi~FKnGe~v~r~~G~~~keeL~~~L 80 (98)
-+++..++++-.+ +. .-|+++ |-||---+-. -+.+||-+ -|.-.+|++|+.+.++.+-.-.++|+..+
T Consensus 274 v~~~~~~~~~~~~----~~-~~pl~VAVMGCVVNGPGEak-~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel~~~i 347 (361)
T COG0821 274 VIQTLNEVEQRLE----HL-KTPLKVAVMGCVVNGPGEAK-HADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEELEALI 347 (361)
T ss_pred HHHHHHHHHHHhh----cc-CCCceEEEEEeEecCCcchh-ccceeeecCCCCeeEEEECCeEEEecChhhHHHHHHHHH
Confidence 3455555555433 32 334444 3344333222 23466653 59999999999999998888888888888
Q ss_pred HHHhh
Q 037669 81 AHFYY 85 (98)
Q Consensus 81 ~~~~~ 85 (98)
+.+.-
T Consensus 348 ~~~~~ 352 (361)
T COG0821 348 EAYAE 352 (361)
T ss_pred HHHHH
Confidence 87653
No 308
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=29.29 E-value=64 Score=20.17 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=30.3
Q ss_pred eEEEEeCCCC-HhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHH
Q 037669 31 RAVKIDINIE-RDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQ 78 (98)
Q Consensus 31 kvvKVDVDen-peLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~ 78 (98)
.+..|+-+.. .++...+.-...+.+++..++ ++..|+++..+|.+
T Consensus 79 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~---~~~~Gvit~~di~~ 124 (125)
T cd04631 79 NVITITPDDSIKDAAELMLEKRVGGLPVVDDD---GKLVGIVTERDLLK 124 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCceEEEEcCC---CcEEEEEEHHHhhc
Confidence 3556666654 445566666678888888753 35789999988764
No 309
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=29.21 E-value=86 Score=19.16 Aligned_cols=43 Identities=5% Similarity=0.013 Sum_probs=26.3
Q ss_pred EEEEeCCCC-HhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHH
Q 037669 32 AVKIDINIE-RDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQ 78 (98)
Q Consensus 32 vvKVDVDen-peLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~ 78 (98)
+..++.++. .+..+.+.=.+.+.+.+.++| +.+|+++..+|..
T Consensus 68 ~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~----~~~Gvvt~~dl~~ 111 (112)
T cd04625 68 PIVASPDDSIDEVRRLMVERHLRYLPVLDGG----TLLGVISFHDVAK 111 (112)
T ss_pred CeEECCCCCHHHHHHHHHHcCCCeeeEEECC----EEEEEEEHHHhhc
Confidence 445666655 334444433456666666766 5789999888764
No 310
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=28.96 E-value=80 Score=19.00 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=28.9
Q ss_pred EEEEeCCCC-HhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHH
Q 037669 32 AVKIDINIE-RDLAYALKVKECPQILFLLGNRILYREKEFRTADELV 77 (98)
Q Consensus 32 vvKVDVDen-peLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~ 77 (98)
...++.+.. .++++.+.-.+.+.+.+..+| +..|+++.+++.
T Consensus 61 ~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~----~~~G~it~~~l~ 103 (105)
T cd04599 61 VVTISPEASLLEAKRLMEEKKIERLPVLRER----KLVGIITKGTIA 103 (105)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEeeEEECC----EEEEEEEHHHhc
Confidence 445566554 456666666677777777775 578988888775
No 311
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.71 E-value=1.5e+02 Score=20.96 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCC-CCCeE-EEEeCCEEeE
Q 037669 16 KAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVK-ECPQI-LFLLGNRILY 65 (98)
Q Consensus 16 k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~-SIPTL-i~FKnGe~v~ 65 (98)
+|++++-... . +.|.-|||=+++|+-+..+-- +=||+ .+|-||+.++
T Consensus 35 ~~vqiL~~~g--~-v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvG 83 (105)
T COG0278 35 QAVQILSACG--V-VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVG 83 (105)
T ss_pred HHHHHHHHcC--C-cceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEec
Confidence 5777776442 2 899999999999998877655 23443 3577898775
No 312
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=28.47 E-value=76 Score=21.86 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=19.8
Q ss_pred HhHHHHHHHHHHHHhhcCCCCCeEEEEeCC
Q 037669 9 KTLKELEKAIQVYWSAKDRLPPRAVKIDIN 38 (98)
Q Consensus 9 ~~~~el~k~~~~~~~~~~~~~vkvvKVDVD 38 (98)
-+++|+-+|++.+. + +++.+||+=
T Consensus 32 AtK~~IK~AvE~lF-~-----VkV~kVNTl 55 (94)
T COG0089 32 ATKPEIKAAVEELF-G-----VKVEKVNTL 55 (94)
T ss_pred CCHHHHHHHHHHHh-C-----CeEEEEEEE
Confidence 36889999999988 3 889999863
No 313
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=28.37 E-value=69 Score=22.54 Aligned_cols=54 Identities=9% Similarity=0.070 Sum_probs=42.2
Q ss_pred CCeEEEE-eCCCCHhHHHHcCCCCCCeEEEEe--CCEEeEeeecccCHHHHHHHHHH
Q 037669 29 PPRAVKI-DINIERDLAYALKVKECPQILFLL--GNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 29 ~vkvvKV-DVDenpeLA~~y~V~SIPTLi~FK--nGe~v~r~~G~~~keeL~~~L~~ 82 (98)
.--++|| |-++-.+|+++..-.+||+-+..+ -|..--=.+|..+++.+.+...+
T Consensus 56 ~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~te~p~gt~T~LaigP~~~~~id~it~~ 112 (116)
T cd02429 56 HKVVLEVPDEAALKNLSSKLTENSIKHKLWIEQPENIPTCIALKPYPKETVASYLKK 112 (116)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCCeEEEEEcCCCCceEEEeCCCCHHHHHHHhCC
Confidence 4567787 456788899999999999999876 47676777788888887776554
No 314
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=28.03 E-value=40 Score=21.30 Aligned_cols=48 Identities=6% Similarity=-0.122 Sum_probs=34.0
Q ss_pred eEEEEeCCCC-HhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHH
Q 037669 31 RAVKIDINIE-RDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQ 78 (98)
Q Consensus 31 kvvKVDVDen-peLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~ 78 (98)
.+..++.+.. .+....+.=..++.+.+..++.--.+..|+++..+|..
T Consensus 69 ~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 69 NITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 3667888887 55667777778888889876422235789998887753
No 315
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=27.86 E-value=1.3e+02 Score=17.26 Aligned_cols=37 Identities=8% Similarity=0.146 Sum_probs=25.9
Q ss_pred CCCCeEEEEeCCC----CHhHHHHcCCCCCCeEEEEeCCEEe
Q 037669 27 RLPPRAVKIDINI----ERDLAYALKVKECPQILFLLGNRIL 64 (98)
Q Consensus 27 ~~~vkvvKVDVDe----npeLA~~y~V~SIPTLi~FKnGe~v 64 (98)
..+.+...+|..+ .+++.....-..+|+|.. .+|..+
T Consensus 23 ~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~l 63 (74)
T cd03051 23 GIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGTVI 63 (74)
T ss_pred CCCceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCCEE
Confidence 5567788888643 466777788889999975 355443
No 316
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=27.35 E-value=25 Score=31.68 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHH-----------HcCCCCCCe
Q 037669 11 LKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAY-----------ALKVKECPQ 54 (98)
Q Consensus 11 ~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~-----------~y~V~SIPT 54 (98)
..||.||.+.||.+| .++|+-...|. +.||.-||+
T Consensus 15 ~RELK~A~E~~W~GK---------ts~ddL~~va~~LR~~~WK~~k~aGv~~IPS 60 (765)
T KOG2263|consen 15 KRELKFALESFWDGK---------TSADDLQKVAADLRSSIWKLMKAAGVKIIPS 60 (765)
T ss_pred cHHHHHHHHhhccCC---------CcHHHHHHHHHHHHHHHHHHHHhcCCeeecC
Confidence 369999999999874 67888766554 568888886
No 317
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=26.97 E-value=74 Score=24.62 Aligned_cols=30 Identities=17% Similarity=0.430 Sum_probs=24.4
Q ss_pred CCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHH
Q 037669 49 VKECPQILFLLGNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 49 V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~ 82 (98)
.+.-|.+++.+||+. +|.+++.++...+..
T Consensus 156 L~~~~AVlV~e~G~~----vGIITk~DI~k~~~~ 185 (187)
T COG3620 156 LEEHPAVLVVENGKV----VGIITKADIMKLLAG 185 (187)
T ss_pred HhhCCeEEEEeCCce----EEEEeHHHHHHHHhc
Confidence 456799999999986 588999999887753
No 318
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.68 E-value=1.3e+02 Score=22.00 Aligned_cols=58 Identities=9% Similarity=-0.001 Sum_probs=39.7
Q ss_pred hhhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCH-------hHHHHcCC-CCCCeEEEEeCCEEeEeeec
Q 037669 5 TKNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIER-------DLAYALKV-KECPQILFLLGNRILYREKE 69 (98)
Q Consensus 5 ~~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenp-------eLA~~y~V-~SIPTLi~FKnGe~v~r~~G 69 (98)
-||=++.+=+.+|+. +. -..+.|+.|+|-+-| ..-...++ ..||||+=+++ ...|..|
T Consensus 46 PdCV~AEPvi~~alk----~a-p~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~--~~~rL~~ 111 (128)
T KOG3425|consen 46 PDCVAAEPVINEALK----HA-PEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKR--QPQRLDG 111 (128)
T ss_pred chHHHhhHHHHHHHH----hC-CCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcC--ccccchH
Confidence 367777888888877 21 445999999997743 33444555 78999999986 3344444
No 319
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=26.67 E-value=61 Score=20.24 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=29.6
Q ss_pred EEEEeCCCC-HhHHHHcCCCCCCeEEEEeC-CEEeEeeecccCHHHHHH
Q 037669 32 AVKIDINIE-RDLAYALKVKECPQILFLLG-NRILYREKEFRTADELVQ 78 (98)
Q Consensus 32 vvKVDVDen-peLA~~y~V~SIPTLi~FKn-Ge~v~r~~G~~~keeL~~ 78 (98)
+..++-|+. .+.++.+.=..++.+.+..+ | +..|+++..++..
T Consensus 66 ~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~----~~~Giit~~di~~ 110 (111)
T cd04603 66 VPIVYCDSKVTDLLRIFRETEPPVVAVVDKEG----KLVGTIYERELLR 110 (111)
T ss_pred CcEECCCCcHHHHHHHHHHcCCCeEEEEcCCC----eEEEEEEhHHhhc
Confidence 445666666 55666666667777777754 4 5689999988764
No 320
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=26.48 E-value=42 Score=16.68 Aligned_cols=27 Identities=7% Similarity=0.069 Sum_probs=17.9
Q ss_pred CCCeEEEEeCCEEeEeeecccCHHHHHHHH
Q 037669 51 ECPQILFLLGNRILYREKEFRTADELVQMI 80 (98)
Q Consensus 51 SIPTLi~FKnGe~v~r~~G~~~keeL~~~L 80 (98)
.+..+.+..++ .+..|+++..++.+.+
T Consensus 22 ~~~~~~v~~~~---~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 22 GIRRLPVVDEE---GRLVGIVTRRDIIKAL 48 (49)
T ss_pred CCCcccEECCC---CeEEEEEEHHHHHHhh
Confidence 45555566553 3568999998887665
No 321
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=25.74 E-value=53 Score=23.34 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=12.7
Q ss_pred HHHcCCCCCCeEEEE
Q 037669 44 AYALKVKECPQILFL 58 (98)
Q Consensus 44 A~~y~V~SIPTLi~F 58 (98)
|-.|||.++|.++|=
T Consensus 77 Aw~lGi~k~PAVV~D 91 (113)
T TIGR03757 77 AWQLGVTKIPAVVVD 91 (113)
T ss_pred HHHcCCccCCEEEEc
Confidence 668999999998764
No 322
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=25.52 E-value=1.9e+02 Score=19.86 Aligned_cols=46 Identities=13% Similarity=0.311 Sum_probs=30.7
Q ss_pred HHHHHHhhcCCCCCeEEEEeCCCCH-hHHH----HcCCCCCCeEEEEeCCEEeE
Q 037669 17 AIQVYWSAKDRLPPRAVKIDINIER-DLAY----ALKVKECPQILFLLGNRILY 65 (98)
Q Consensus 17 ~~~~~~~~~~~~~vkvvKVDVDenp-eLA~----~y~V~SIPTLi~FKnGe~v~ 65 (98)
+...+|.. -.++.+++.+|-+++. ++-. --|-.++|.+ |=+|+-++
T Consensus 29 ~~k~ll~~-~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v--FI~Gk~iG 79 (104)
T KOG1752|consen 29 RAKELLSD-LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNV--FIGGKFIG 79 (104)
T ss_pred HHHHHHHh-CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE--EECCEEEc
Confidence 34555644 3677899999988765 4433 3446789986 55888774
No 323
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=25.26 E-value=55 Score=21.93 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=45.0
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeCCCCH----hHHHHcCCCCCCeEEEEeCCEEeEeeec----ccCHHHHHHHHHHHhhc
Q 037669 15 EKAIQVYWSAKDRLPPRAVKIDINIER----DLAYALKVKECPQILFLLGNRILYREKE----FRTADELVQMIAHFYYK 86 (98)
Q Consensus 15 ~k~~~~~~~~~~~~~vkvvKVDVDenp----eLA~~y~V~SIPTLi~FKnGe~v~r~~G----~~~keeL~~~L~~~~~~ 86 (98)
.||.+.+.++. +.+-.+|+.+++ +|.+-+.-.+.|.--+|.-....||..| -++.+++.++|...-.=
T Consensus 14 ~ka~~~L~~~g----i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~~~ls~~e~i~~l~~~p~L 89 (115)
T cd03032 14 RKAKQWLEEHQ----IPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDIDELSLSELIRLISEHPSL 89 (115)
T ss_pred HHHHHHHHHCC----CceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCcccCCHHHHHHHHHhChhh
Confidence 45666666665 788888887763 4444444444555556666666677666 35667788887665443
Q ss_pred CCCC
Q 037669 87 ARRP 90 (98)
Q Consensus 87 ~~~p 90 (98)
=+||
T Consensus 90 ikRP 93 (115)
T cd03032 90 LRRP 93 (115)
T ss_pred eeCC
Confidence 4555
No 324
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=24.96 E-value=1.4e+02 Score=17.84 Aligned_cols=29 Identities=7% Similarity=0.122 Sum_probs=21.0
Q ss_pred CCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 51 ECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 51 SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
.=|++++..+|. ..|-++.+++.+.|+.+
T Consensus 49 ~~P~v~i~~~~~----~y~~v~~~~~~~il~~~ 77 (77)
T cd02980 49 LAPVVVVYPDGV----WYGRVTPEDVEEIVEEL 77 (77)
T ss_pred CCCEEEEeCCCe----EEccCCHHHHHHHHHhC
Confidence 458888886553 56667889888888753
No 325
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=24.90 E-value=72 Score=22.36 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=9.9
Q ss_pred eEEEEeCCEEeE
Q 037669 54 QILFLLGNRILY 65 (98)
Q Consensus 54 TLi~FKnGe~v~ 65 (98)
|=++|+||+++.
T Consensus 82 TplvF~n~~Lvg 93 (102)
T PF11399_consen 82 TPLVFKNGKLVG 93 (102)
T ss_pred EEEEEECCEEEE
Confidence 568999999875
No 326
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=24.56 E-value=97 Score=19.14 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=28.5
Q ss_pred EEEEeCCCC-HhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHH
Q 037669 32 AVKIDINIE-RDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQ 78 (98)
Q Consensus 32 vvKVDVDen-peLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~ 78 (98)
+..++.+.. .++...+.-...+.+.+.++| +..|+++..++.+
T Consensus 77 ~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~~----~~~Gvv~~~di~~ 120 (121)
T cd04584 77 VITVHPLDTVEEAALLMREHRIGCLPVVEDG----RLVGIITETDLLR 120 (121)
T ss_pred CeEECCCCcHHHHHHHHHHcCCCeEEEeeCC----EEEEEEEHHHhhc
Confidence 445555554 334455555677888888775 5789998887753
No 327
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=24.53 E-value=76 Score=21.20 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHHHHHhhcCCCCCeEEEEeC
Q 037669 8 WKTLKELEKAIQVYWSAKDRLPPRAVKIDI 37 (98)
Q Consensus 8 ~~~~~el~k~~~~~~~~~~~~~vkvvKVDV 37 (98)
.-++.|+.+|++.+. . +++.+||+
T Consensus 31 ~anK~eIK~AvE~lf-~-----VkV~~VnT 54 (84)
T PRK14548 31 RATKPDIKRAVEELF-D-----VKVEKVNT 54 (84)
T ss_pred CCCHHHHHHHHHHHh-C-----CceEEEEe
Confidence 346778888888876 3 77888877
No 328
>PRK14449 acylphosphatase; Provisional
Probab=24.41 E-value=1.9e+02 Score=18.92 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=34.7
Q ss_pred HhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHhhcCCCCCCC
Q 037669 41 RDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHFYYKARRPSWI 93 (98)
Q Consensus 41 peLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~~~~~~p~~~ 93 (98)
..+|.++|+.+- +-=..||.+---..| +.+.|+++++.+.-+. +++.+
T Consensus 23 ~~~A~~lgl~G~--V~N~~dG~Vei~~~G--~~~~v~~f~~~l~~~~-~~a~V 70 (90)
T PRK14449 23 YQKAVSLGITGY--AENLYDGSVEVVAEG--DEENIKELINFIKTGL-RWARV 70 (90)
T ss_pred HHHHHHcCCEEE--EEECCCCeEEEEEEe--CHHHHHHHHHHHhhCC-CceEE
Confidence 357888888875 444567877777777 7888999998887763 45444
No 329
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=24.33 E-value=75 Score=28.12 Aligned_cols=50 Identities=26% Similarity=0.340 Sum_probs=34.7
Q ss_pred hHHHHcCCCCCCeEEEEeCCEEeEeeecccC-----HHHHHHHHHHHhhcCCCCCCC
Q 037669 42 DLAYALKVKECPQILFLLGNRILYREKEFRT-----ADELVQMIAHFYYKARRPSWI 93 (98)
Q Consensus 42 eLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~-----keeL~~~L~~~~~~~~~p~~~ 93 (98)
.++..-|.+.| +++++++|+.+.+.. +.+ .++++.+|..||-....|..+
T Consensus 254 a~~~~~~~~~v-~vf~~R~Gkllg~~~-~f~~~~~~~~~~~~fi~Q~Y~~~~~P~~I 308 (581)
T COG0322 254 AGAVDGGEACV-QVFFVRGGKLLGRRA-YFPLENEAEEELEAFILQFYKSNEIPKEI 308 (581)
T ss_pred eeeecCCeEEE-EEEEeecchhcCCcc-eecCCCccchHHHHHHHHHhcCCCCcceE
Confidence 34444454544 566779999999885 444 445999999999887777643
No 330
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=24.20 E-value=1.8e+02 Score=17.69 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=29.9
Q ss_pred HHhhcCCCCCeEEEEeCC----CCHhHHHHcCCCCCCeEEEEeCCEEeEe
Q 037669 21 YWSAKDRLPPRAVKIDIN----IERDLAYALKVKECPQILFLLGNRILYR 66 (98)
Q Consensus 21 ~~~~~~~~~vkvvKVDVD----enpeLA~~y~V~SIPTLi~FKnGe~v~r 66 (98)
..+.+ ..+..+..+|.. ..+++.+-..-..||+|+ .+|..++.
T Consensus 18 ~L~e~-gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~l~E 64 (73)
T cd03052 18 VIAEK-GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNIICD 64 (73)
T ss_pred HHHHc-CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEEEEc
Confidence 33344 456888888873 246688888888999996 48876543
No 331
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=23.92 E-value=97 Score=20.10 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCc
Q 037669 73 ADELVQMIAHFYYKARRPSWIDK 95 (98)
Q Consensus 73 keeL~~~L~~~~~~~~~p~~~~~ 95 (98)
.+.+.+.|...+-+..+|+++++
T Consensus 18 ~~~i~~~L~~kL~~i~~P~fl~~ 40 (91)
T PF10296_consen 18 RDKIKEKLQKKLNKIKLPSFLDE 40 (91)
T ss_pred HHHHHHHHHHHHccccCCCccCc
Confidence 35677788888888899999975
No 332
>TIGR01878 cas_Csa5 CRISPR-associated protein, Csa5 family. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor family of Cas protein found in the (all archaeal) APERN subtype of CRISPR/Cas locus, so the family is designated Csa5, for CRISPR/Cas Subtype Protein 5.
Probab=23.78 E-value=1.4e+02 Score=20.84 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=34.8
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHH
Q 037669 7 NWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIA 81 (98)
Q Consensus 7 ~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~ 81 (98)
-...+.|...+.+++|+++ |++.+ +.+| ..++|+..--.-+.-+.++++++++
T Consensus 23 v~~aL~ea~R~~~s~~~~a----------~~~~~---gk~~---------~~kegk~~~~~~~lptdeeVe~f~r 75 (97)
T TIGR01878 23 VEVALYEAQRILRSIREGA----------DIDIE---GKRY---------MEKEGKNRILVGYLPTDKEVEDFLR 75 (97)
T ss_pred HHHHHHHHHHHHHHHHhhh----------hHHHH---hHHH---------hhhcCcceeecCCCCcHHHHHHHHH
Confidence 3458899999999999875 23322 4445 7788874333335556677777764
No 333
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=23.57 E-value=96 Score=17.66 Aligned_cols=27 Identities=7% Similarity=0.019 Sum_probs=17.4
Q ss_pred eEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 54 QILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 54 TLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
.+++-++|+....++ |.++..++.+..
T Consensus 23 pv~It~~g~~~avlv---~~~~y~~l~~~~ 49 (52)
T TIGR01552 23 PVTITKRGRPVAVLV---SAADYDRLQETL 49 (52)
T ss_pred CEEEEECCcceEEEe---eHHHHHHHHHHh
Confidence 467789998877765 555555554443
No 334
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=23.55 E-value=16 Score=19.83 Aligned_cols=12 Identities=0% Similarity=0.072 Sum_probs=9.4
Q ss_pred ccCHHHHHHHHH
Q 037669 70 FRTADELVQMIA 81 (98)
Q Consensus 70 ~~~keeL~~~L~ 81 (98)
..++++|.++++
T Consensus 37 ~~~~~~l~~~~~ 48 (49)
T TIGR01764 37 RIPREDVDEYLE 48 (49)
T ss_pred EEeHHHHHHHHh
Confidence 458899988876
No 335
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=23.47 E-value=65 Score=26.04 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=37.8
Q ss_pred hHHHHcCCCCCCeEEEEeCCEEeE--eeecccCHHHHHHHHHHH
Q 037669 42 DLAYALKVKECPQILFLLGNRILY--REKEFRTADELVQMIAHF 83 (98)
Q Consensus 42 eLA~~y~V~SIPTLi~FKnGe~v~--r~~G~~~keeL~~~L~~~ 83 (98)
++|+.||+.-|=||==|-=|+++. |..|+.+..+|.+.|+.+
T Consensus 110 d~a~e~g~~~IyTLGGy~vGkl~eep~VlGA~ts~eLi~~lke~ 153 (258)
T COG2047 110 DIAKEFGARMIYTLGGYGVGKLVEEPRVLGAVTSKELIEELKEH 153 (258)
T ss_pred HHHHHcCCcEEEEecCcccCcccCCceeEEecCCHHHHHHHHHc
Confidence 689999999999999899999886 789999999999999876
No 336
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=23.47 E-value=1.1e+02 Score=18.46 Aligned_cols=43 Identities=9% Similarity=0.037 Sum_probs=28.1
Q ss_pred EEEeCCCC-HhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHH
Q 037669 33 VKIDINIE-RDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQ 78 (98)
Q Consensus 33 vKVDVDen-peLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~ 78 (98)
.-++.+.. .++.+.+.=.+++.+.+..++ .+.+|++++.+|.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~---~~~~Gvi~~~~l~~ 105 (106)
T cd04582 62 VTVSVDDDLRIVLSRMFAHDMSWLPCVDED---GRYVGEVTQRSIAD 105 (106)
T ss_pred EEECCCCCHHHHHHHHHHCCCCeeeEECCC---CcEEEEEEHHHhhc
Confidence 33555554 456666666777888777543 34689999888764
No 337
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=23.43 E-value=1.8e+02 Score=17.40 Aligned_cols=43 Identities=9% Similarity=0.020 Sum_probs=29.4
Q ss_pred HHhhcCCCCCeEEEEeCC---CCHhHHHHcCCCCCCeEEEEeCCEEeE
Q 037669 21 YWSAKDRLPPRAVKIDIN---IERDLAYALKVKECPQILFLLGNRILY 65 (98)
Q Consensus 21 ~~~~~~~~~vkvvKVDVD---enpeLA~~y~V~SIPTLi~FKnGe~v~ 65 (98)
+.+.+ ..+.+...||.. ..+++.+-.-...+|+|..- ||..++
T Consensus 18 ~l~~~-gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~-~g~~l~ 63 (75)
T cd03044 18 AAKYN-GLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGA-DGFCLF 63 (75)
T ss_pred HHHHc-CCceEEEecccccccCCHHHHHhCCCCCCCEEEcC-CCCEEe
Confidence 33344 456888888875 35777777788899999653 565443
No 338
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=23.30 E-value=80 Score=19.42 Aligned_cols=44 Identities=9% Similarity=0.176 Sum_probs=27.2
Q ss_pred EEEEeCCCC-HhHHHHcCCCCCCeEEEEe-CCEEeEeeecccCHHHHHHH
Q 037669 32 AVKIDINIE-RDLAYALKVKECPQILFLL-GNRILYREKEFRTADELVQM 79 (98)
Q Consensus 32 vvKVDVDen-peLA~~y~V~SIPTLi~FK-nGe~v~r~~G~~~keeL~~~ 79 (98)
+.-++-+.. .++++.+....++-+.+.. +| +..|+++..+|.+.
T Consensus 63 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~----~~~Gvit~~dll~~ 108 (109)
T cd04606 63 VISVSADDDQEEVARLFEKYDLLALPVVDEEG----RLVGIITVDDVIDV 108 (109)
T ss_pred CeEEcCCCCHHHHHHHHHHcCCceeeeECCCC----cEEEEEEhHHhhhh
Confidence 344444443 4455555555666666664 44 57899999988764
No 339
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=23.19 E-value=1.6e+02 Score=26.85 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=25.8
Q ss_pred CeEEEEeCCEEeEeeeccc-----CHHHHHHHHHHHhhcCCCCCC
Q 037669 53 PQILFLLGNRILYREKEFR-----TADELVQMIAHFYYKARRPSW 92 (98)
Q Consensus 53 PTLi~FKnGe~v~r~~G~~-----~keeL~~~L~~~~~~~~~p~~ 92 (98)
=+++++++|+++++..=.. ..+.|.++|..||-+..-|+.
T Consensus 267 i~vl~iR~G~l~~~~~~~~~~~~~~~e~l~~fl~qyY~~~~iP~~ 311 (691)
T PRK14672 267 FAVLRMRGGKLNGRELFRTRSLKNEEEILSEFLITYYSDHTIPPH 311 (691)
T ss_pred EEEEEEECCEEecceeeecCCCCCHHHHHHHHHHHHhcCCCCCCE
Confidence 3577789999999864322 245577777776644334543
No 340
>COG3741 HutG N-formylglutamate amidohydrolase [Amino acid transport and metabolism]
Probab=22.89 E-value=77 Score=25.82 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=40.5
Q ss_pred EEEEeCCCCHhHHHHc------CCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHHh
Q 037669 32 AVKIDINIERDLAYAL------KVKECPQILFLLGNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 32 vvKVDVDenpeLA~~y------~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
=.-||++.+|+-+.-| |+-.+|++ +|+.+++.-|..+.+|....|+.+|
T Consensus 72 R~~vDvNR~p~~~~l~~~~~ttGL~~~~~f----dge~l~~~g~~~~~~e~~~Rle~~~ 126 (272)
T COG3741 72 RAVVDVNREPDGASLYPGRVTTGLGPVTTF----DGEPLYIYGGAPTPAEALARLETLW 126 (272)
T ss_pred ceeEecCCCCCCCcCccccccCCccccccc----cCccccccCCCCCHHHHHHHHHHhh
Confidence 3557777778777777 66677776 7999999999999999999999886
No 341
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=22.83 E-value=74 Score=25.68 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=22.0
Q ss_pred CCCeEEEEeCCCCHhHHHHcCCCCC
Q 037669 28 LPPRAVKIDINIERDLAYALKVKEC 52 (98)
Q Consensus 28 ~~vkvvKVDVDenpeLA~~y~V~SI 52 (98)
-.-.+.-||.|+|..|+.++||..=
T Consensus 28 ~~~~VLvVDaDpd~nL~~~LGve~~ 52 (255)
T COG3640 28 GGYNVLVVDADPDSNLPEALGVEEP 52 (255)
T ss_pred CCceEEEEeCCCCCChHHhcCCCCC
Confidence 3478999999999999999999863
No 342
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=22.34 E-value=2.1e+02 Score=19.44 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=39.2
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcC--C--------CCCCeE-EEEeCCEEeEeeecccCH
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALK--V--------KECPQI-LFLLGNRILYREKEFRTA 73 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~--V--------~SIPTL-i~FKnGe~v~r~~G~~~k 73 (98)
.|-+.++.-+++..++-..+ +.+-.|||..+++.-+... + .+.|-. .+|.+|+-++..--|...
T Consensus 12 g~~~ikk~q~~v~~iL~a~k----I~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye~f~ea 86 (99)
T PF04908_consen 12 GSREIKKRQQRVLMILEAKK----IPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYEDFEEA 86 (99)
T ss_dssp SSHHHHHHHHHHHHHHHHTT------EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcC----CCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHHHHHHH
Confidence 34566677777777776555 8999999999877555444 2 233443 689999988765554443
No 343
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=22.27 E-value=1.1e+02 Score=19.53 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=25.8
Q ss_pred HhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHH
Q 037669 41 RDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQ 78 (98)
Q Consensus 41 peLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~ 78 (98)
.++.+.+.-.+++.+.+..++ -.+..|+++..+|.+
T Consensus 90 ~~~l~~m~~~~~~~lpVvd~~--~~~~~G~it~~di~~ 125 (126)
T cd04640 90 GDVVETLKASGRQHALVVDRE--HHQIRGIISTSDIAR 125 (126)
T ss_pred HHHHHHHHHCCCceEEEEECC--CCEEEEEEeHHHHhh
Confidence 456666666788888888764 124679999988864
No 344
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=22.14 E-value=1.2e+02 Score=26.74 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=26.3
Q ss_pred eEEEEeCCEEeEeeecccCH---HHHHHHHHHHhhcCCCCCCC
Q 037669 54 QILFLLGNRILYREKEFRTA---DELVQMIAHFYYKARRPSWI 93 (98)
Q Consensus 54 TLi~FKnGe~v~r~~G~~~k---eeL~~~L~~~~~~~~~p~~~ 93 (98)
+++++++|+++.+..=..+. ++. ++|..||.+...|+.+
T Consensus 258 ~v~~iR~G~l~~~~~~~~~~~~~~~~-~fl~qyY~~~~~P~~i 299 (567)
T PRK14667 258 GLFLVRSSKLVGKEEFRLESEEQEEE-EVILGYYYSNYIPQKI 299 (567)
T ss_pred EEEEEECCEEecceeeecCCCCcCHH-HHHHHHhcCCCCCCEE
Confidence 78888999999986544421 233 5888888654556543
No 345
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=21.73 E-value=1.9e+02 Score=17.12 Aligned_cols=51 Identities=10% Similarity=0.217 Sum_probs=29.8
Q ss_pred CCCCeEEEEeCCCCHhHHHHcCCCCCCeEEEEe--CCEEeEeeecccCHHHHHHHHHHHh
Q 037669 27 RLPPRAVKIDINIERDLAYALKVKECPQILFLL--GNRILYREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 27 ~~~vkvvKVDVDenpeLA~~y~V~SIPTLi~FK--nGe~v~r~~G~~~keeL~~~L~~~~ 84 (98)
..+..+.-+|....+++. ..+-..+|+|..=. +|+.++ ....|.+.|++++
T Consensus 24 gi~y~~~~~~~~~~~~~~-~~~~~~vP~l~~~~~~~~~~l~------eS~~I~~yL~~~~ 76 (77)
T cd03040 24 GIPYEVVEVNPVSRKEIK-WSSYKKVPILRVESGGDGQQLV------DSSVIISTLKTYL 76 (77)
T ss_pred CCceEEEECCchhHHHHH-HhCCCccCEEEECCCCCccEEE------cHHHHHHHHHHHc
Confidence 445566555544444553 46778999997542 355443 4556666666543
No 346
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=21.59 E-value=70 Score=22.62 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=16.0
Q ss_pred HHHHcCCCCCCeEEEEeCCEEeE
Q 037669 43 LAYALKVKECPQILFLLGNRILY 65 (98)
Q Consensus 43 LA~~y~V~SIPTLi~FKnGe~v~ 65 (98)
-|-.|||..+|.++|= +..+|+
T Consensus 75 ~Aw~lgi~k~PAVVfD-~~~VVY 96 (114)
T PF07511_consen 75 DAWSLGITKYPAVVFD-DRYVVY 96 (114)
T ss_pred HHHHhCccccCEEEEc-CCeEEe
Confidence 3678999999998764 444444
No 347
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=21.50 E-value=2.6e+02 Score=18.58 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=26.5
Q ss_pred CCCeEEEEeCCEEe-EeeecccCHHHHHHHHHHHh
Q 037669 51 ECPQILFLLGNRIL-YREKEFRTADELVQMIAHFY 84 (98)
Q Consensus 51 SIPTLi~FKnGe~v-~r~~G~~~keeL~~~L~~~~ 84 (98)
..|++.+.++|+-. -|..|.=.-+|+-.+|..+|
T Consensus 60 ~~P~~~i~~~~~~~gIrF~GiP~GhEf~Slilai~ 94 (94)
T cd02974 60 RKPSFSINRPGEDTGIRFAGIPMGHEFTSLVLALL 94 (94)
T ss_pred CCCEEEEecCCCcccEEEEecCCchhHHHHHHHhC
Confidence 47999999998432 57788888888888887664
No 348
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=21.36 E-value=2.1e+02 Score=19.95 Aligned_cols=62 Identities=3% Similarity=-0.035 Sum_probs=40.0
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhH---HHHcC----CCCCCeEEEEeCCEEeEeeeccc
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDL---AYALK----VKECPQILFLLGNRILYREKEFR 71 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeL---A~~y~----V~SIPTLi~FKnGe~v~r~~G~~ 71 (98)
-|-..+++|++..+-|-..+ +.++-|.+|..... ....+ ...+|--++......+.+..|+.
T Consensus 44 ~C~~~l~~l~~~~~~~~~~~----v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~ 112 (173)
T cd03015 44 VCPTEIIAFSDRYEEFKKLN----AEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVL 112 (173)
T ss_pred cCHHHHHHHHHHHHHHHHCC----CEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCc
Confidence 46667889998888887544 89999999876442 22322 34566666665555555556643
No 349
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=21.30 E-value=2.1e+02 Score=17.42 Aligned_cols=59 Identities=10% Similarity=0.050 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHc---CCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 16 KAIQVYWSAKDRLPPRAVKIDINIERDLAYAL---KVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 16 k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y---~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
|+.-++++. ..+...+.+|..+.+.....+ .-..+|+|+. .+|..+ .....|.+.|+.-
T Consensus 21 kv~~~L~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~~l------~eS~aI~~yL~~~ 82 (84)
T cd03038 21 KTRLALNHK--GLEYKTVPVEFPDIPPILGELTSGGFYTVPVIVD-GSGEVI------GDSFAIAEYLEEA 82 (84)
T ss_pred HHHHHHHhC--CCCCeEEEecCCCcccccccccCCCCceeCeEEE-CCCCEE------eCHHHHHHHHHHh
Confidence 344445533 456788888876544433333 3468999854 326543 3566777777654
No 350
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=21.21 E-value=58 Score=19.97 Aligned_cols=43 Identities=7% Similarity=0.015 Sum_probs=25.0
Q ss_pred EEEEeCCCC-HhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHH
Q 037669 32 AVKIDINIE-RDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQ 78 (98)
Q Consensus 32 vvKVDVDen-peLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~ 78 (98)
+..++.+.. .++...+.-.+++.+.+..+| +.+|+++..+|.+
T Consensus 70 ~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~----~~~Gvit~~di~~ 113 (114)
T cd04629 70 VLTVSPDDSIVDLAQLMLKAKPKRYPVVDDG----KLVGQISRRDVLR 113 (114)
T ss_pred ceEECCCCcHHHHHHHHHHhCCCccCEEECC----EEEEEEEHHHHhc
Confidence 344555443 233333333344556677765 6799999988864
No 351
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=21.18 E-value=1.5e+02 Score=22.71 Aligned_cols=43 Identities=9% Similarity=0.198 Sum_probs=30.8
Q ss_pred CCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHH
Q 037669 38 NIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 38 DenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~ 82 (98)
|-.++++.+++|.-||--+.+. |+...-... ++.+++-+.++.
T Consensus 10 dl~~~~~~~~~I~vvPl~I~~~-~~~y~D~~~-i~~~~~y~~~~~ 52 (275)
T TIGR00762 10 DLPPELIEEYGITVVPLTVIID-GKTYRDGVD-ITPEEFYEKLKE 52 (275)
T ss_pred CCCHHHHHHcCCEEEEEEEEEC-CEEeecCCC-CCHHHHHHHHHh
Confidence 4458899999999999999886 443333223 677777777754
No 352
>PRK06437 hypothetical protein; Provisional
Probab=21.13 E-value=1.5e+02 Score=18.41 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=19.3
Q ss_pred HhHHHHcCCCCCCeEEEEeCCEEeE
Q 037669 41 RDLAYALKVKECPQILFLLGNRILY 65 (98)
Q Consensus 41 peLA~~y~V~SIPTLi~FKnGe~v~ 65 (98)
.+|.+++++. -..+.+..||+++.
T Consensus 24 ~dLL~~Lgi~-~~~vaV~vNg~iv~ 47 (67)
T PRK06437 24 NDIIKDLGLD-EEEYVVIVNGSPVL 47 (67)
T ss_pred HHHHHHcCCC-CccEEEEECCEECC
Confidence 4555899985 57889999999986
No 353
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.05 E-value=1.6e+02 Score=21.09 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=25.8
Q ss_pred eEEEEeCCEEeEeeecccCHHHHHHHHHH
Q 037669 54 QILFLLGNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 54 TLi~FKnGe~v~r~~G~~~keeL~~~L~~ 82 (98)
-.|+|..|++....++++..+.+.++|+.
T Consensus 38 D~IiF~~~~l~v~V~~vr~Y~tF~~mlre 66 (111)
T COG4043 38 DKIIFNGDKLKVEVIDVRVYDTFEEMLRE 66 (111)
T ss_pred CEEEEcCCeeEEEEEEEeehhHHHHHHHh
Confidence 45788889999999999999999999865
No 354
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=20.82 E-value=1.9e+02 Score=16.81 Aligned_cols=56 Identities=14% Similarity=0.155 Sum_probs=35.7
Q ss_pred HHHHHhhcCCCCCeEEEEeCC----CCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHHH
Q 037669 18 IQVYWSAKDRLPPRAVKIDIN----IERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAHF 83 (98)
Q Consensus 18 ~~~~~~~~~~~~vkvvKVDVD----enpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~~ 83 (98)
--++. .+ ..+..+..+|.. ..+++.+......+|+|. .+|..++ ....|.+.|+..
T Consensus 15 ~~~l~-~~-~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~--~~g~~l~------es~aI~~yL~~~ 74 (76)
T cd03046 15 LWLLE-EL-GLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLV--DGDLVLT------ESAAIILYLAEK 74 (76)
T ss_pred HHHHH-Hc-CCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEE--ECCEEEE------cHHHHHHHHHHh
Confidence 33444 33 456788888864 347777778888999995 4665443 445566666543
No 355
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=20.79 E-value=93 Score=18.98 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=26.5
Q ss_pred EEEEeCCCC-HhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHH
Q 037669 32 AVKIDINIE-RDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQ 78 (98)
Q Consensus 32 vvKVDVDen-peLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~ 78 (98)
+.-++.+.. .++.+.+.-..++.+.+.++| +..|+++++++.+
T Consensus 67 ~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~----~~~Giit~~di~~ 110 (111)
T cd04800 67 PITIPPDATVFEALLLMLERGIHHLPVVDDG----RLVGVISATDLLR 110 (111)
T ss_pred CeEECCCCcHHHHHHHHHHcCCCeeeEeECC----EEEEEEEHHHhhc
Confidence 444555553 334444444456666677764 4689999988764
No 356
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=20.54 E-value=99 Score=19.19 Aligned_cols=45 Identities=0% Similarity=-0.070 Sum_probs=28.6
Q ss_pred eEEEEeCCCCH-hHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHH
Q 037669 31 RAVKIDINIER-DLAYALKVKECPQILFLLGNRILYREKEFRTADELVQ 78 (98)
Q Consensus 31 kvvKVDVDenp-eLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~ 78 (98)
.+..++.+... ++...+.-..+..+.+..+. .+..|+++.++|.+
T Consensus 76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~---g~~~Gvit~~dl~~ 121 (122)
T cd04635 76 PVYSVTPDDSIATAVELMLEHDIGRLPVVNEK---DQLVGIVDRHDVLK 121 (122)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC---CcEEEEEEhHHhhc
Confidence 35666666653 35555666667777777542 35788888887754
No 357
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=20.46 E-value=1.1e+02 Score=19.94 Aligned_cols=27 Identities=22% Similarity=0.344 Sum_probs=21.4
Q ss_pred CCCHhHHHHcC-CCCCCeEEEEeCCEEe
Q 037669 38 NIERDLAYALK-VKECPQILFLLGNRIL 64 (98)
Q Consensus 38 DenpeLA~~y~-V~SIPTLi~FKnGe~v 64 (98)
..+.+|-.++. +.+||.+.+-+++-++
T Consensus 71 T~D~~Lr~~lr~~~GvPvi~l~~~~~~l 98 (101)
T PF04900_consen 71 TQDKELRRRLRKIPGVPVIYLRRNVLIL 98 (101)
T ss_pred ecCHHHHHHHhcCCCCCEEEEECCEEEe
Confidence 46788999999 9999998887655444
No 358
>PHA02131 hypothetical protein
Probab=20.40 E-value=24 Score=22.99 Aligned_cols=21 Identities=0% Similarity=-0.089 Sum_probs=16.6
Q ss_pred cCCCCCCeEEEEeCCEEeEee
Q 037669 47 LKVKECPQILFLLGNRILYRE 67 (98)
Q Consensus 47 y~V~SIPTLi~FKnGe~v~r~ 67 (98)
..-.+|-..+.||||++..-.
T Consensus 24 h~~~g~~c~imfk~~~v~dct 44 (70)
T PHA02131 24 HYRFGISCWIMFKNDQVIDCT 44 (70)
T ss_pred ceecceEEEEEEcCCCEEEee
Confidence 344678899999999998754
No 359
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.28 E-value=1.8e+02 Score=24.10 Aligned_cols=43 Identities=26% Similarity=0.210 Sum_probs=35.8
Q ss_pred hhHHhHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCHhHHHHcCC
Q 037669 6 KNWKTLKELEKAIQVYWSAKDRLPPRAVKIDINIERDLAYALKV 49 (98)
Q Consensus 6 ~~~~~~~el~k~~~~~~~~~~~~~vkvvKVDVDenpeLA~~y~V 49 (98)
.-+.|..+|--|||-.||.+ +-.--++-||.++.-.|-.++.-
T Consensus 159 ~eelts~dLadai~qm~e~~-Ryneil~miDTCQaasly~~~~s 201 (309)
T KOG1349|consen 159 AEELTSDDLADAIQQMWEKK-RYNEILFMIDTCQAASLYERFYS 201 (309)
T ss_pred HHHhhhHHHHHHHHHHHHhh-hhceEEEEeeccchHHHHHhhcC
Confidence 34678999999999999987 77777888999998888877754
No 360
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=20.24 E-value=63 Score=17.96 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=17.3
Q ss_pred CCCCeEEEEeCCCCHhHHHHc
Q 037669 27 RLPPRAVKIDINIERDLAYAL 47 (98)
Q Consensus 27 ~~~vkvvKVDVDenpeLA~~y 47 (98)
..+.+++++|..+-++|.+++
T Consensus 2 ~~~p~vi~~d~~~Fr~lVQ~L 22 (31)
T PF05678_consen 2 RSPPTVIHTDPSNFRALVQRL 22 (31)
T ss_pred CCCCEEEEeCHHHHHHHHHHh
Confidence 356889999999999988875
No 361
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=20.24 E-value=1.1e+02 Score=18.53 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=21.1
Q ss_pred hHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHH
Q 037669 42 DLAYALKVKECPQILFLLGNRILYREKEFRTADELVQ 78 (98)
Q Consensus 42 eLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~ 78 (98)
++...+.-.+.-.+.+.++| +..|+++.+++.+
T Consensus 73 ~~~~~~~~~~~~~~~Vvd~~----~~~G~it~~d~~~ 105 (106)
T cd04638 73 EAAKLMVENNIRRVPVVDDG----KLVGIVTVADIVR 105 (106)
T ss_pred HHHHHHHHcCCCEEEEEECC----EEEEEEEHHHhhc
Confidence 44444444455556666765 6789999887754
No 362
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=20.04 E-value=1.5e+02 Score=22.81 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=28.7
Q ss_pred CCCHhHHHHcCCCCCCeEEEEeCCEEeEeeecccCHHHHHHHHHH
Q 037669 38 NIERDLAYALKVKECPQILFLLGNRILYREKEFRTADELVQMIAH 82 (98)
Q Consensus 38 DenpeLA~~y~V~SIPTLi~FKnGe~v~r~~G~~~keeL~~~L~~ 82 (98)
|-.++++++|+|.-+|--+.+.+ ..++----++.+++-+.++.
T Consensus 11 dl~~~~~~~~~i~vvPl~i~~~~--~~y~D~~~i~~~efy~~l~~ 53 (280)
T PF02645_consen 11 DLPPELAEEYGIYVVPLNIIIDG--KEYRDGVDISPEEFYEKLRE 53 (280)
T ss_dssp ---HHHHHHTTEEEE--EEEETT--EEEETTTTSCHHHHHHHHHH
T ss_pred CCCHHHHHhCCeEEEeEEEecCC--eEEecCCCCCHHHHHHHHHh
Confidence 34589999999999999998876 23333336788888888843
No 363
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=20.00 E-value=1.6e+02 Score=18.52 Aligned_cols=44 Identities=5% Similarity=-0.036 Sum_probs=31.8
Q ss_pred CeEEEEeCCCC-HhHHHHcCCCCCCeEEEEe-CCEEeEeeecccCHHHHH
Q 037669 30 PRAVKIDINIE-RDLAYALKVKECPQILFLL-GNRILYREKEFRTADELV 77 (98)
Q Consensus 30 vkvvKVDVDen-peLA~~y~V~SIPTLi~FK-nGe~v~r~~G~~~keeL~ 77 (98)
-.+..++-+.. .+.+..+.-..++.+.+.. +|+ .+|.++.++|.
T Consensus 76 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~----~vGiit~~di~ 121 (123)
T cd04627 76 SDVISINGDQPLIDALHLMHNEGISSVAVVDNQGN----LIGNISVTDVR 121 (123)
T ss_pred CCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCc----EEEEEeHHHhh
Confidence 44667777777 5577777777888888884 454 57888888775
Done!