BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037670
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 89.4 bits (220), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 15 REFLEAHNLARAAVGVAPLKWSEKLGNGTNRVVRFQRNKMGCQFANLTSGKYGANQLWGS 74
+++L HN ARA VGV P+ W L +R + ++ G NL G N G
Sbjct: 5 QDYLAVHNDARAQVGVGPMSWDANL---ASRAQNYANSRAG--DCNLIHSGAGENLAKGG 59
Query: 75 GMAVTPRMAVDAWVNEKTFYNHADNSCAPNHRCGVYKQVVWRKSLELGCAQATCVKQQVT 134
G T R AV WV+E+ YN+A N C +C Y QVVWR S+ LGC +A C
Sbjct: 60 G-DFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWF 118
Query: 135 LTVCFYDPPGNIIGESP 151
++ C YDP GN IG+ P
Sbjct: 119 IS-CNYDPVGNWIGQRP 134
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
Resolution: Structual Relationship Of The Two Domains
Length = 221
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 6/150 (4%)
Query: 7 APVLPAAAREFLEAHNLARAAVG-----VAPLKWSEKLGNGTNRVVRFQRNKMGCQFANL 61
+P P E ++ HN R +V + ++W + + R + +
Sbjct: 8 SPRKPEIQNEIVDLHNSLRRSVNPTASNMLRMEWYPEAADNAERWAYRCIESHSSYESRV 67
Query: 62 TSGKYGANQLWGSGMAVTPRMAVDAWVNEKTFYNHADNSCAPNHRCGVYKQVVWRKSLEL 121
G ++ S + + AW +E + + + PN G Y Q+VW KS +
Sbjct: 68 IEGIKCGENIYMSPYPMKWTDIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRI 127
Query: 122 GCAQATCVKQQVT-LTVCFYDPPGNIIGES 150
GCA A C + VC Y P GN IG++
Sbjct: 128 GCAAAYCPSSPYSYFFVCQYCPAGNFIGKT 157
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 20/151 (13%)
Query: 15 REFLEAHNLARAAV-----GVAPLKWSEKLGNGTNRVVRFQRNKMGCQFANLTSGKYGAN 69
+E ++ HN R +V + +KW+ + R C FA+ K
Sbjct: 8 KEIVDKHNALRRSVKPTARNMLQMKWNSRAAQNAKRWAN------RCTFAHSPPNKRTVG 61
Query: 70 QL-WGSGMAVTPRM-----AVDAWVNEKTFYNHADNSCAPNHRCGVYKQVVWRKSLELGC 123
+L G + ++ + V AW +E + + + P G Y QVVW KS +GC
Sbjct: 62 KLRCGENIFMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIGC 121
Query: 124 AQATCVKQQVTLTVCFYDPPGNIIGE--SPY 152
A A C + L VC Y P GNI G +PY
Sbjct: 122 ASAKCSSSKY-LYVCQYCPAGNIRGSIATPY 151
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 62/151 (41%), Gaps = 20/151 (13%)
Query: 15 REFLEAHNLARAAV-----GVAPLKWSEKLGNGTNRVVRFQRNKMGCQFAN-----LTSG 64
+E ++ HN R +V + +KW+ R C FA+ T G
Sbjct: 7 KEIVDKHNALRRSVKPTARNMLQMKWNSHAAQNAKRWAD------RCTFAHSPPNTRTVG 60
Query: 65 KYGANQ-LWGSGMAVTPRMAVDAWVNEKTFYNHADNSCAPNHRCGVYKQVVWRKSLELGC 123
K + ++ S V AW +E + + + P G Y QVVW KS +GC
Sbjct: 61 KLRCGENIFMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGC 120
Query: 124 AQATCVKQQVTLTVCFYDPPGNIIGE--SPY 152
A A C + L VC Y P GNI G +PY
Sbjct: 121 ASAKCSSSKY-LYVCQYCPAGNIRGSIATPY 150
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 14/157 (8%)
Query: 7 APVLPAAAREFLEAHNLARAAVG-----VAPLKWSEKLGNGTNRVVRFQRNKMGCQFANL 61
+P P E ++ HN R +V + ++W + R + + +
Sbjct: 8 SPRKPEIQNEIIDLHNSLRRSVNPTASNMLKMEWYPEAAANAERWAYRCIESHSSRDSRV 67
Query: 62 TSGKYGANQLWGSGMAVTPRMAVD---AWVNEKTFYNHADNSCAPNHRCGVYKQVVWRKS 118
G ++ MA P D AW E + + + + G Y Q+VW KS
Sbjct: 68 IGGIKCGENIY---MATYPAKWTDIIHAWHGEYKDFKYGVGAVPSDAVIGHYTQIVWYKS 124
Query: 119 LELGCAQATCVKQQVT-LTVCFYDPPGNIIGE--SPY 152
GCA A C + + VC Y P GNIIG+ +PY
Sbjct: 125 YRAGCAAAYCPSSKYSYFYVCQYCPAGNIIGKTATPY 161
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
Length = 154
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 5/135 (3%)
Query: 16 EFLEAHNLARAAVGVAPLKWSEKLGNGTNRVVR-FQRNKMGCQFANLTSGKYGANQLWGS 74
E L+AHN R GV PLK + L + ++ + G+ G N W S
Sbjct: 12 EVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQXGENLAWAS 71
Query: 75 GMAVTPRMAVDAWVNEKTFYNHADNSCAPNHRCGVYKQVVWRKSLELGCAQATCVKQQVT 134
T + D W +E YN G + +VW+ + ++G +A+ +
Sbjct: 72 -YDQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKASA-SDGSS 127
Query: 135 LTVCFYDPPGNIIGE 149
V Y P GN++ E
Sbjct: 128 FVVARYFPAGNVVNE 142
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
Length = 154
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 5/135 (3%)
Query: 16 EFLEAHNLARAAVGVAPLKWSEKLGNGTNRVVR-FQRNKMGCQFANLTSGKYGANQLWGS 74
E L+AHN R GV PLK + L + ++ + G+ G N W S
Sbjct: 12 EVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS 71
Query: 75 GMAVTPRMAVDAWVNEKTFYNHADNSCAPNHRCGVYKQVVWRKSLELGCAQATCVKQQVT 134
T + D W +E YN G + +VW+ + ++G +A+ +
Sbjct: 72 -YDQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKASA-SDGSS 127
Query: 135 LTVCFYDPPGNIIGE 149
V Y P GN++ E
Sbjct: 128 FVVARYFPAGNVVNE 142
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 103 PNHRCGVYKQVVWRKSLELGCAQATCVKQQVTLTVCFYDPPGNIIGESPY 152
PN + G Y Q+ W + +LGCA C T VC Y P GN +G Y
Sbjct: 352 PNMQIGHYTQMAWDTTYKLGCAVVFC--NDFTFGVCQYGPGGNYMGHVIY 399
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 108 GVYKQVVWRKSLELGCAQATCVKQQVTLTVCFYDPPGNIIGESPY 152
G Y Q+VW+++++LGC C + VC Y P GN++G+ Y
Sbjct: 133 GHYTQMVWQETVKLGCYVEAC--SNMCYVVCQYGPAGNMMGKDIY 175
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 79 TPRMAVDAWVNEKTFYNHADNSCAPNH-----RCGVYKQVVWRKSLELGCAQATCVKQQV 133
TP + W NE +++ S P+ + G Y Q+VW K+ ++GC + K+
Sbjct: 127 TPNEMILLWYNEVKDFDNRWISSFPSDDNILMKVGHYTQIVWAKTTKIGCGRIM-FKEPD 185
Query: 134 TLT----VCFYDPPGNIIGESPY 152
T VC Y P GN++G Y
Sbjct: 186 NWTKHYLVCNYGPAGNVLGAPIY 208
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 60 NLTSGKYGANQLWGSGMAVTPRMAVDAWVNEKTFYNHADNSCAPNHRCGVYKQVVWRKSL 119
N TS G N GS + A+ W +E Y+ C CG Y QVVW S
Sbjct: 77 NFTS--LGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRIC--KKVCGHYTQVVWADSY 132
Query: 120 ELGCAQATCVK-------QQVTLTVCFYDPPGN 145
++GCA C K +C Y P GN
Sbjct: 133 KVGCAVQFCPKVSGFDALSNGAHFICNYGPGGN 165
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 8/146 (5%)
Query: 15 REFLEAHNLAR-----AAVGVAPLKWSEKLGNGTNRVVRFQRNKMGCQFANLTSGKYGAN 69
+E ++ HN R A + ++W + + R + G
Sbjct: 16 KEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANTCSLNHSPDNLRVLEGIQCGE 75
Query: 70 QLWGSGMAVTPRMAVDAWVNEKTFYNHADNSCAPNHRCGVYKQVVWRKSLELGCAQATCV 129
++ S A T + W +E + + + P G Y Q+VW ++ GCA + C
Sbjct: 76 SIYMSSNARTWTEIIHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWYQTYRAGCAVSYCP 135
Query: 130 KQQVT-LTVCFYDPPGNIIGE--SPY 152
+ VC Y P GN G+ +PY
Sbjct: 136 SSAWSYFYVCQYCPSGNFQGKTATPY 161
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
Length = 209
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 13/109 (11%)
Query: 56 CQFANLTSGKYGANQLWGSGMAVT---------PRMAVDAWVNEKTFYNHADNSCAPNH- 105
CQ+ + T Q+ G +A+T P V W +E YN +
Sbjct: 99 CQYGHDTCRDVAKYQV-GQNVALTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFL 157
Query: 106 RCGVYKQVVWRKSLELGCAQATCVKQQ--VTLTVCFYDPPGNIIGESPY 152
+ G Y Q+VW + E+GC ++++ VC Y P GN E Y
Sbjct: 158 KTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELY 206
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 8/146 (5%)
Query: 15 REFLEAHNLAR-----AAVGVAPLKWSEKLGNGTNRVVRFQRNKMGCQFANLTSGKYGAN 69
+E ++ HN R A + ++W + + R + G
Sbjct: 16 KEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANTCSLNHSPDNLRVLEGIQCGE 75
Query: 70 QLWGSGMAVTPRMAVDAWVNEKTFYNHADNSCAPNHRCGVYKQVVWRKSLELGCAQATCV 129
++ S A T + W +E + + + P G Y Q+VW ++ GCA + C
Sbjct: 76 SIYMSSNARTWTEIIHLWHDEYKNFVYGVGANPPGSVTGHYTQIVWYQTYRAGCAVSYCP 135
Query: 130 KQQVT-LTVCFYDPPGNIIGE--SPY 152
+ VC Y P GN G+ +PY
Sbjct: 136 SSAWSYFYVCQYCPSGNFQGKTATPY 161
>pdb|1RYL|A Chain A, The Crystal Structure Of A Protein Of Unknown Function
Yfbm From Escherichia Coli
pdb|1RYL|B Chain B, The Crystal Structure Of A Protein Of Unknown Function
Yfbm From Escherichia Coli
Length = 167
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 14 AREFLEAHNLARAAVGVAPLKWSEKLGNGTNRVVRFQRNKMGCQFA 59
+R L H+L G L W+++L +R+ RN++ QF+
Sbjct: 68 SRAVLGEHSLEDGIDGFLGLTWNQELAATIDRLESLDRNELRKQFS 113
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 26.6 bits (57), Expect = 6.2, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 62 TSGKYGANQLWGSGMAVTPRMAVDAWVNEKTFYNHADN 99
T K+ +LWG + + +AV W+ T Y +N
Sbjct: 746 TPVKWNLPKLWGMSVLLGVVLAVGTWITVTTMYAQGEN 783
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,009,241
Number of Sequences: 62578
Number of extensions: 187455
Number of successful extensions: 704
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 21
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)