Query 037670
Match_columns 152
No_of_seqs 209 out of 1095
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:14:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 100.0 1.5E-44 3.2E-49 245.4 16.2 135 15-152 2-136 (136)
2 cd05384 SCP_PRY1_like SCP_PRY1 100.0 2E-40 4.2E-45 223.3 14.5 129 12-148 1-129 (129)
3 cd05382 SCP_GAPR-1_like SCP_GA 100.0 2.8E-40 6E-45 223.1 12.8 130 12-146 1-132 (132)
4 cd05383 SCP_CRISP SCP_CRISP: S 100.0 4.9E-38 1.1E-42 213.9 13.7 130 13-143 2-138 (138)
5 cd05385 SCP_GLIPR-1_like SCP_G 100.0 7.4E-38 1.6E-42 214.4 14.0 129 12-143 1-144 (144)
6 smart00198 SCP SCP / Tpx-1 / A 100.0 1.9E-37 4.2E-42 212.1 13.2 125 13-143 2-144 (144)
7 cd05559 SCP_HrTT-1 SCP_HrTT-1: 100.0 1.8E-36 3.9E-41 205.7 12.8 124 14-141 1-136 (136)
8 KOG3017 Defense-related protei 100.0 4E-36 8.7E-41 219.5 10.7 139 11-152 39-198 (225)
9 cd00168 SCP SCP: SCP-like extr 100.0 6.5E-35 1.4E-39 194.5 13.2 119 15-141 2-122 (122)
10 cd05380 SCP_euk SCP_euk: SCP-l 100.0 2.5E-34 5.4E-39 196.1 10.8 124 14-141 1-144 (144)
11 PF00188 CAP: Cysteine-rich se 99.9 8.6E-24 1.9E-28 138.2 8.8 117 18-140 1-124 (124)
12 TIGR02909 spore_YkwD uncharact 99.9 2E-20 4.3E-25 125.5 12.4 108 11-140 2-125 (127)
13 cd05379 SCP_bacterial SCP_bact 99.7 7.9E-17 1.7E-21 106.4 11.0 104 15-140 2-121 (122)
14 COG2340 Uncharacterized protei 99.4 1.3E-12 2.7E-17 94.5 9.5 100 10-129 77-192 (207)
15 PF11054 Surface_antigen: Spor 76.5 29 0.00063 25.9 8.5 132 14-152 35-218 (254)
16 KOG0286 G-protein beta subunit 67.6 3.5 7.7E-05 31.6 1.6 35 111-147 78-112 (343)
17 PF08557 Lipid_DES: Sphingolip 44.5 31 0.00067 18.0 2.3 22 12-33 17-38 (39)
18 PF10729 CedA: Cell division a 35.9 35 0.00075 20.2 1.9 15 40-54 62-76 (80)
19 PF13780 DUF4176: Domain of un 35.7 28 0.0006 21.0 1.5 16 135-151 36-51 (76)
20 COG1318 Predicted transcriptio 33.1 38 0.00083 23.9 2.1 20 30-49 39-58 (182)
21 PF04863 EGF_alliinase: Alliin 31.1 58 0.0013 18.4 2.2 17 33-49 1-17 (56)
22 PRK10113 cell division modulat 30.8 38 0.00082 20.0 1.5 15 40-54 62-76 (80)
23 KOG4439 RNA polymerase II tran 29.7 69 0.0015 28.0 3.4 43 11-53 782-846 (901)
24 PF12960 DUF3849: Protein of u 26.4 1.3E+02 0.0028 20.3 3.7 40 11-50 48-91 (133)
25 PF05391 Lsm_interact: Lsm int 26.1 76 0.0017 14.1 1.8 16 3-18 5-20 (21)
26 cd02164 PPAT_CoAS phosphopante 25.0 58 0.0013 22.1 1.9 23 12-34 97-119 (143)
27 PHA00684 hypothetical protein 24.2 26 0.00056 23.4 0.0 12 118-129 79-90 (128)
28 PF03295 Pox_TAA1: Poxvirus tr 23.5 82 0.0018 18.1 2.0 19 12-30 24-42 (63)
29 COG1019 Predicted nucleotidylt 23.2 62 0.0013 22.4 1.7 17 18-34 106-122 (158)
30 PF13983 YsaB: YsaB-like lipop 22.8 61 0.0013 19.2 1.4 13 134-146 59-71 (77)
31 PF11903 DUF3423: Protein of u 20.2 1.2E+02 0.0027 18.0 2.4 20 30-49 1-20 (72)
32 PLN02388 phosphopantetheine ad 20.0 79 0.0017 22.4 1.8 22 13-34 118-139 (177)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=1.5e-44 Score=245.40 Aligned_cols=135 Identities=46% Similarity=0.930 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHhhhhcCCCccccCCCCCCcceEEeccCCCCCHHHHHHHHHhhhhcC
Q 037670 15 REFLEAHNLARAAVGVAPLKWSEKLGNGTNRVVRFQRNKMGCQFANLTSGKYGANQLWGSGMAVTPRMAVDAWVNEKTFY 94 (152)
Q Consensus 15 ~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~~~C~~~~~~~~~~Gen~~~~~~~~~~~~~~v~~W~~e~~~y 94 (152)
++||+.||.+|+.++|++|+||++|+..||.||++|+. +|. ..++...+||||++.......+.++|+.|++|...|
T Consensus 2 ~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~--~c~-~~~~~~~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y 78 (136)
T cd05381 2 QDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRG--DCA-LVHSNGPYGENLFWGSGGNWSAADAVASWVSEKKYY 78 (136)
T ss_pred hHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcC--CCC-cccCCCCCCceEEEecCCCCCHHHHHHHHHhccccC
Confidence 68999999999999999999999999999999999883 484 456666699999987654567889999999999999
Q ss_pred CCCCCCCCCCCCcchHHHHHHhhcceeeEEEEEeCCCCcEEEEEEecCCCCCCCCCCC
Q 037670 95 NHADNSCAPNHRCGVYKQVVWRKSLELGCAQATCVKQQVTLTVCFYDPPGNIIGESPY 152 (152)
Q Consensus 95 ~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~gn~~g~~~Y 152 (152)
++..+.+..+..++|||||||+++++||||++.|.++...+|||+|+|+||+.|++||
T Consensus 79 ~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vvC~Y~p~gn~~g~~~Y 136 (136)
T cd05381 79 DYDSNTCAAGKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQRPY 136 (136)
T ss_pred CCCCCCcCCCccchHHHHHHHHhcCEeceEEEEeCCCCcEEEEEEeeCCCCCCCCCCC
Confidence 9988877766789999999999999999999999875568999999999999999999
No 2
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=100.00 E-value=2e-40 Score=223.26 Aligned_cols=129 Identities=33% Similarity=0.549 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHhhhhcCCCccccCCCCCCcceEEeccCCCCCHHHHHHHHHhhh
Q 037670 12 AAAREFLEAHNLARAAVGVAPLKWSEKLGNGTNRVVRFQRNKMGCQFANLTSGKYGANQLWGSGMAVTPRMAVDAWVNEK 91 (152)
Q Consensus 12 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~~~C~~~~~~~~~~Gen~~~~~~~~~~~~~~v~~W~~e~ 91 (152)
++++.||+.||.+|+.++|++|+||.+|+..||.||++|+.. | ...|....+|||++.+. .++.++|+.|++|.
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~~~--~-~~~~~~~~~geNi~~~~---~~~~~~v~~W~~e~ 74 (129)
T cd05384 1 SFASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCS--G-NLAHSGGPYGENLAAGY---PSGTSAVDAWYDEI 74 (129)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhccC--C-ceecCCCCCCcEEEEec---CCHHHHHHHHHhhh
Confidence 378999999999999999999999999999999999997633 2 24556667999998754 26889999999999
Q ss_pred hcCCCCCCCCCCCCCcchHHHHHHhhcceeeEEEEEeCCCCcEEEEEEecCCCCCCC
Q 037670 92 TFYNHADNSCAPNHRCGVYKQVVWRKSLELGCAQATCVKQQVTLTVCFYDPPGNIIG 148 (152)
Q Consensus 92 ~~y~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~gn~~g 148 (152)
..|++..+.+. ..++|||||||+++++||||++.|......++||+|+|+||+.|
T Consensus 75 ~~y~~~~~~~~--~~~~h~tqmvw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~Gn~~g 129 (129)
T cd05384 75 EDYDYSNPGFS--EATGHFTQLVWKSTTQVGCAYKDCGGAWGWYIVCEYDPAGNVIG 129 (129)
T ss_pred hhCCCCCCCCC--CcccchhhhhhhccceeeeEEEEeCCCCeEEEEEEEECCCCCCc
Confidence 99999876543 67999999999999999999999987545789999999999875
No 3
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=100.00 E-value=2.8e-40 Score=223.10 Aligned_cols=130 Identities=32% Similarity=0.495 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHhhhhcCCCccccCCCCCCcceEEeccC--CCCCHHHHHHHHHh
Q 037670 12 AAAREFLEAHNLARAAVGVAPLKWSEKLGNGTNRVVRFQRNKMGCQFANLTSGKYGANQLWGSG--MAVTPRMAVDAWVN 89 (152)
Q Consensus 12 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~~~C~~~~~~~~~~Gen~~~~~~--~~~~~~~~v~~W~~ 89 (152)
++++.||+.||.+|+.++|++|+||++|+..||.||++|+..++ ..+.+...+|||+++... ....+.++|+.|++
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~--~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~ 78 (132)
T cd05382 1 DFQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGK--LQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYN 78 (132)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhhcCc--eeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHh
Confidence 37899999999999999999999999999999999999877654 223333368999998764 45688999999999
Q ss_pred hhhcCCCCCCCCCCCCCcchHHHHHHhhcceeeEEEEEeCCCCcEEEEEEecCCCCC
Q 037670 90 EKTFYNHADNSCAPNHRCGVYKQVVWRKSLELGCAQATCVKQQVTLTVCFYDPPGNI 146 (152)
Q Consensus 90 e~~~y~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~gn~ 146 (152)
|...|++..+... ..++||+||||+++++||||++.|..+ .+++||+|+|+||+
T Consensus 79 e~~~y~~~~~~~~--~~~gh~tqmvw~~t~~vGCa~~~~~~~-~~~~vC~Y~p~Gn~ 132 (132)
T cd05382 79 EIKKYDFNKPGFS--SKTGHFTQVVWKSSTELGVGVAKSKKG-CVYVVARYRPAGNV 132 (132)
T ss_pred ccccCCCCCCCCC--CCCCCeEEeEecCCCceeeEEEEcCCC-CEEEEEEEeCCCCC
Confidence 9999998755433 579999999999999999999999875 47899999999995
No 4
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=100.00 E-value=4.9e-38 Score=213.92 Aligned_cols=130 Identities=23% Similarity=0.386 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHhhC-----CCCCCccCHHHHHHHHHHHHhhhhcCC-CccccCCCCCCcceEEeccCCCCCHHHHHHH
Q 037670 13 AAREFLEAHNLARAAV-----GVAPLKWSEKLGNGTNRVVRFQRNKMG-CQFANLTSGKYGANQLWGSGMAVTPRMAVDA 86 (152)
Q Consensus 13 ~~~~il~~hN~~R~~~-----~m~~L~Wd~~La~~A~~~a~~~~~~~~-C~~~~~~~~~~Gen~~~~~~~~~~~~~~v~~ 86 (152)
.++.||+.||.+|+.+ +|++|+||++||..||.||++|...++ |.........+|||++.... ...+.++|+.
T Consensus 2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a~~C~~~~~~~~~~~~~~~~~GeNl~~~~~-~~~~~~av~~ 80 (138)
T cd05383 2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWANTCNLTHSPPNGRTIGGITCGENIFMSSY-PRSWSDVIQA 80 (138)
T ss_pred HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHHhcCCCcCCchhhcccCCCCcceeeeccCC-CCCHHHHHHH
Confidence 5789999999999998 477899999999999999999654443 21111123458999997653 3577899999
Q ss_pred HHhhhhcCCCCCCCCCCCCCcchHHHHHHhhcceeeEEEEEeCCC-CcEEEEEEecCC
Q 037670 87 WVNEKTFYNHADNSCAPNHRCGVYKQVVWRKSLELGCAQATCVKQ-QVTLTVCFYDPP 143 (152)
Q Consensus 87 W~~e~~~y~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~-~~~~~vC~Y~p~ 143 (152)
||+|...|+|..+.+..+..++|||||||++|++||||++.|..+ ..+++||+|+|+
T Consensus 81 W~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~ 138 (138)
T cd05383 81 WYDEYKDFKYGVGATPPGAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA 138 (138)
T ss_pred HHHHHHhCCCCCCCCCCCCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence 999999999988776666889999999999999999999999875 257899999995
No 5
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=7.4e-38 Score=214.45 Aligned_cols=129 Identities=31% Similarity=0.558 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHhhC-----CCCCCccCHHHHHHHHHHHHhhhhcCC-Ccccc-----CCCCCCcceEEeccCCCCCH
Q 037670 12 AAAREFLEAHNLARAAV-----GVAPLKWSEKLGNGTNRVVRFQRNKMG-CQFAN-----LTSGKYGANQLWGSGMAVTP 80 (152)
Q Consensus 12 ~~~~~il~~hN~~R~~~-----~m~~L~Wd~~La~~A~~~a~~~~~~~~-C~~~~-----~~~~~~Gen~~~~~~~~~~~ 80 (152)
+|+++||+.||.+|+.+ +|++|+||++|+..||.||++|...++ | ... .....+||||++.......+
T Consensus 1 ~f~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a~~C~~~~~~~-~~~~~~~~~~~~~~GeNi~~~~~~~~~~ 79 (144)
T cd05385 1 EFIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAKKCKFKHNIY-LGKRYKCHPKFTSVGENIWLGSIYIFSP 79 (144)
T ss_pred CHHHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHHhcCCCCCCch-hhcccccccccCcccceeeecccCCCCH
Confidence 47899999999999999 699999999999999999999765544 3 111 11246899998776555688
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHhhcceeeEEEEEeCCCC----cEEEEEEecCC
Q 037670 81 RMAVDAWVNEKTFYNHADNSCAPNHRCGVYKQVVWRKSLELGCAQATCVKQQ----VTLTVCFYDPP 143 (152)
Q Consensus 81 ~~~v~~W~~e~~~y~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~----~~~~vC~Y~p~ 143 (152)
.++|+.||+|...|+|..+.+. ..++|||||||++|++||||++.|.+++ ..+|||+|+|+
T Consensus 80 ~~av~~W~~e~~~y~~~~~~~~--~~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~ 144 (144)
T cd05385 80 KNAVTSWYNEGKFYDFDTNSCS--RVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144 (144)
T ss_pred HHHHHHHHHHHHhCCCCCCCCC--CcccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence 9999999999999999877665 5899999999999999999999998753 36899999984
No 6
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=100.00 E-value=1.9e-37 Score=212.05 Aligned_cols=125 Identities=34% Similarity=0.663 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHhhCC-----------CCCCccCHHHHHHHHHHHHhhhhcCCCccccCCCCCCcceEEeccC----CC
Q 037670 13 AAREFLEAHNLARAAVG-----------VAPLKWSEKLGNGTNRVVRFQRNKMGCQFANLTSGKYGANQLWGSG----MA 77 (152)
Q Consensus 13 ~~~~il~~hN~~R~~~~-----------m~~L~Wd~~La~~A~~~a~~~~~~~~C~~~~~~~~~~Gen~~~~~~----~~ 77 (152)
.++.||+.||.+|+.++ |++|+||++||..|+.||++ |...+.....+|||+++... ..
T Consensus 2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a~~------C~~~~~~~~~~GeNi~~~~~~~~~~~ 75 (144)
T smart00198 2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWANQ------CPFGHSTPRGYGENLAWWSSSTDLPI 75 (144)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHHHh------CCCcCCCcCCcCcceEEecccCcccc
Confidence 58899999999999998 99999999999999999999 53222222378999998653 33
Q ss_pred CCHHHHHHHHHhhhhcCCCCCCCCCC-CCCcchHHHHHHhhcceeeEEEEEeCCCCc--EEEEEEecCC
Q 037670 78 VTPRMAVDAWVNEKTFYNHADNSCAP-NHRCGVYKQVVWRKSLELGCAQATCVKQQV--TLTVCFYDPP 143 (152)
Q Consensus 78 ~~~~~~v~~W~~e~~~y~~~~~~~~~-~~~~~hftq~vw~~t~~vGCa~~~c~~~~~--~~~vC~Y~p~ 143 (152)
..+..+|+.||+|...|++..+.+.. +..++|||||||+++++||||++.|.++.. .++||+|+|+
T Consensus 76 ~~~~~av~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~ 144 (144)
T smart00198 76 TYASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP 144 (144)
T ss_pred hhHHHHHHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence 57788999999999999998877654 578999999999999999999999987742 6899999995
No 7
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=1.8e-36 Score=205.74 Aligned_cols=124 Identities=31% Similarity=0.552 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhhCC-----CCCCccCHHHHHHHHHHHHhhhhcCC-CccccCCCCCCcceEEeccCCCCCHHHHHHHH
Q 037670 14 AREFLEAHNLARAAVG-----VAPLKWSEKLGNGTNRVVRFQRNKMG-CQFANLTSGKYGANQLWGSGMAVTPRMAVDAW 87 (152)
Q Consensus 14 ~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~~~-C~~~~~~~~~~Gen~~~~~~~~~~~~~~v~~W 87 (152)
|+.||+.||.+|+.++ |.+|+||++||..||.||++|...++ | .....+||||+...+....+.++|+.|
T Consensus 1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a~~C~~~~~~~----~~~~~~GeNl~~~~~~~~~~~~~v~~W 76 (136)
T cd05559 1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYARKCIWDHNPD----RGHLRVGENLFISTGPPFDATKAVEDW 76 (136)
T ss_pred CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHHHhccccCCCc----ccCCCceeeeeecCCCCCCHHHHHHHH
Confidence 4789999999999984 77899999999999999999443322 1 011368999998765556789999999
Q ss_pred HhhhhcCCCCCCCCCCCCCcchHHHHHHhhcceeeEEEEEeCCC------CcEEEEEEec
Q 037670 88 VNEKTFYNHADNSCAPNHRCGVYKQVVWRKSLELGCAQATCVKQ------QVTLTVCFYD 141 (152)
Q Consensus 88 ~~e~~~y~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~------~~~~~vC~Y~ 141 (152)
++|...|++..+.+..+..++|||||||++|++||||++.|.+. ...++||+|+
T Consensus 77 ~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~ 136 (136)
T cd05559 77 NNEKLDYNYNTNTCAPNKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG 136 (136)
T ss_pred HHHHHhcCCCCCCCCCCCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence 99999999988877766789999999999999999999999753 2478999995
No 8
>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]
Probab=100.00 E-value=4e-36 Score=219.54 Aligned_cols=139 Identities=36% Similarity=0.673 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHHHhhCC-----CCCCccCHHHHHHHHHHHHhhhhcCC-CccccC-CCCCCcceEEeccCC------C
Q 037670 11 PAAAREFLEAHNLARAAVG-----VAPLKWSEKLGNGTNRVVRFQRNKMG-CQFANL-TSGKYGANQLWGSGM------A 77 (152)
Q Consensus 11 ~~~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~~~-C~~~~~-~~~~~Gen~~~~~~~------~ 77 (152)
.+++++|++.||.+|..+. |++|+||++||..||.||++|...++ | .+ ....+||||++.... .
T Consensus 39 ~~~~~~~~~~hn~~r~~~~~~as~m~~m~Wd~~La~~Aq~~a~~c~~~~~~~---~~~~~~~~GeNl~~~~~~~~~~~~~ 115 (225)
T KOG3017|consen 39 NNLRSEILNGHNVARGAVGPPASNMMKLKWDDELAALAQNWANTCPFGHDKC---VHTSFGPYGENLAWGWSSNPPLSLD 115 (225)
T ss_pred HHHHHHHHhhhHHhcCccCCchHhCccccCCHHHHHHHHHHHhhCCcccCcc---ccccCCCCcccceeeccCCCCcccc
Confidence 4899999999999999998 99999999999999999999877654 3 22 356679999986643 1
Q ss_pred CCHHHHHHHHHhhhhcCCCCCCCCCC---CCCcchHHHHHHhhcceeeEEEEEeCCCC----cEEEEEEecCCCCCCC-C
Q 037670 78 VTPRMAVDAWVNEKTFYNHADNSCAP---NHRCGVYKQVVWRKSLELGCAQATCVKQQ----VTLTVCFYDPPGNIIG-E 149 (152)
Q Consensus 78 ~~~~~~v~~W~~e~~~y~~~~~~~~~---~~~~~hftq~vw~~t~~vGCa~~~c~~~~----~~~~vC~Y~p~gn~~g-~ 149 (152)
.....++..|+.|...|++..+.+.. +..+||||||||++|++||||++.|.++. .+++||+|+|+||..+ +
T Consensus 116 ~~~~~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~ 195 (225)
T KOG3017|consen 116 TSGALAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGE 195 (225)
T ss_pred ccHHHHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCC
Confidence 56778999999999999999998874 67899999999999999999999999885 6899999999966555 5
Q ss_pred CCC
Q 037670 150 SPY 152 (152)
Q Consensus 150 ~~Y 152 (152)
.||
T Consensus 196 ~~y 198 (225)
T KOG3017|consen 196 IPY 198 (225)
T ss_pred CcC
Confidence 776
No 9
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=100.00 E-value=6.5e-35 Score=194.48 Aligned_cols=119 Identities=32% Similarity=0.490 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhhC-CCCCCccCHHHHHHHHHHHHhhhhcCC-CccccCCCCCCcceEEeccCCCCCHHHHHHHHHhhhh
Q 037670 15 REFLEAHNLARAAV-GVAPLKWSEKLGNGTNRVVRFQRNKMG-CQFANLTSGKYGANQLWGSGMAVTPRMAVDAWVNEKT 92 (152)
Q Consensus 15 ~~il~~hN~~R~~~-~m~~L~Wd~~La~~A~~~a~~~~~~~~-C~~~~~~~~~~Gen~~~~~~~~~~~~~~v~~W~~e~~ 92 (152)
++||+.||.+|+.+ +|++|+||++|+..|+.||++|...++ | .....+|||++++... .++..+|+.|++|..
T Consensus 2 ~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~~c~~~h~~~----~~~~~~geNi~~~~~~-~~~~~~v~~W~~e~~ 76 (122)
T cd00168 2 QEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYANRCIFKHSGE----DGRGFVGENLAAGSYD-MTGPAAVQAWYNEIK 76 (122)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHhhccccCCCc----ccCCCCCceeEEecCC-CCHHHHHHHHHHHHH
Confidence 57999999999999 999999999999999999999433222 1 0113689999987643 678999999999999
Q ss_pred cCCCCCCCCCCCCCcchHHHHHHhhcceeeEEEEEeCCCCcEEEEEEec
Q 037670 93 FYNHADNSCAPNHRCGVYKQVVWRKSLELGCAQATCVKQQVTLTVCFYD 141 (152)
Q Consensus 93 ~y~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~~vC~Y~ 141 (152)
.|+|..+... ..++||+||||+++++||||++.|..+ ..++||+|+
T Consensus 77 ~y~~~~~~~~--~~~~h~~qmvw~~s~~vGca~~~~~~~-~~~~vC~Y~ 122 (122)
T cd00168 77 NYNFGQPGFS--SGTGHYTQVVWKNTTKIGCGVAFCGSN-SYYVVCNYG 122 (122)
T ss_pred hCCCCCCCCC--CCccchhhhhcccCCeeeeEEEEcCCC-CEEEEEeCc
Confidence 9999855443 679999999999999999999999975 478999995
No 10
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=2.5e-34 Score=196.13 Aligned_cols=124 Identities=32% Similarity=0.539 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHhhC------------CCCCCccCHHHHHHHHHHHHhhhhcCC-CccccCCCCCCcceEEeccCC----
Q 037670 14 AREFLEAHNLARAAV------------GVAPLKWSEKLGNGTNRVVRFQRNKMG-CQFANLTSGKYGANQLWGSGM---- 76 (152)
Q Consensus 14 ~~~il~~hN~~R~~~------------~m~~L~Wd~~La~~A~~~a~~~~~~~~-C~~~~~~~~~~Gen~~~~~~~---- 76 (152)
++.||+.||.+|+.+ +|++|+||.+|+..|+.||++|...++ |. ....+|||++.....
T Consensus 1 ~~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a~~C~~~~~~~~----~~~~~GeNl~~~~~~~~~~ 76 (144)
T cd05380 1 RQAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAKTCVFEHSPCR----NTGGVGQNLAAGSSTGSTV 76 (144)
T ss_pred CcHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHHhcCCCcCCccc----CCCCCCcEEEEeccCCCCH
Confidence 468999999999999 899999999999999999999532222 10 013689999987643
Q ss_pred CCCHHHHHHHHHhhhhcCCCCCC-CCCCCCCcchHHHHHHhhcceeeEEEEEeCCC--CcEEEEEEec
Q 037670 77 AVTPRMAVDAWVNEKTFYNHADN-SCAPNHRCGVYKQVVWRKSLELGCAQATCVKQ--QVTLTVCFYD 141 (152)
Q Consensus 77 ~~~~~~~v~~W~~e~~~y~~~~~-~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~--~~~~~vC~Y~ 141 (152)
...+.++|+.||+|...|++... .+.....++|||||||+++++||||++.|... ...++||+|+
T Consensus 77 ~~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~ 144 (144)
T cd05380 77 EELAEDAVNAWYNELKDYGFGSNPTNNFNSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCcccccccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence 23678999999999999999875 34455789999999999999999999999864 4589999995
No 11
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.90 E-value=8.6e-24 Score=138.21 Aligned_cols=117 Identities=29% Similarity=0.509 Sum_probs=83.7
Q ss_pred HHHHHHHH-hhCCCCCCccCHHHHHHHHHHHHhhhhcCCCccccCCCCCCcceEEeccCCCCCH---HHHHHHHHhhhhc
Q 037670 18 LEAHNLAR-AAVGVAPLKWSEKLGNGTNRVVRFQRNKMGCQFANLTSGKYGANQLWGSGMAVTP---RMAVDAWVNEKTF 93 (152)
Q Consensus 18 l~~hN~~R-~~~~m~~L~Wd~~La~~A~~~a~~~~~~~~C~~~~~~~~~~Gen~~~~~~~~~~~---~~~v~~W~~e~~~ 93 (152)
|+.||.+| ...++++|+||++|+..|+.+|+. |..........|+++.+........ ...+..|+.+...
T Consensus 1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (124)
T PF00188_consen 1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAKY------CANSNSLSHDSGENGSQSSRFGSYSDAQVTAVENWYSESKN 74 (124)
T ss_dssp HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHTT------TCSSEETTEESEEEEEEESSTTSHHHHHHHHHHHHHGGGGG
T ss_pred CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhHH------hhhhcccccccCCCCccccccccccchhhHHHHHHHhcccc
Confidence 78999999 888888899999999999999999 5321222344678887655322211 1128999999988
Q ss_pred CCCCC--CCCCCCCCcchHHHHHHhhcceeeEEEEEeCCCCc-EEEEEEe
Q 037670 94 YNHAD--NSCAPNHRCGVYKQVVWRKSLELGCAQATCVKQQV-TLTVCFY 140 (152)
Q Consensus 94 y~~~~--~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~-~~~vC~Y 140 (152)
+.... ........++||+||+|..+++||||++.|..+.. +++||.|
T Consensus 75 ~~~~~~~~~~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y 124 (124)
T PF00188_consen 75 YNFQNQSIFNSWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY 124 (124)
T ss_dssp EETTCSTEESSTTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred cccccchhhhccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence 87762 12223367899999999999999999999998865 8999998
No 12
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=99.85 E-value=2e-20 Score=125.52 Aligned_cols=108 Identities=21% Similarity=0.250 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHhhhhcCCCccccCCC----------------CCCcceEEecc
Q 037670 11 PAAAREFLEAHNLARAAVGVAPLKWSEKLGNGTNRVVRFQRNKMGCQFANLTS----------------GKYGANQLWGS 74 (152)
Q Consensus 11 ~~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~~~C~~~~~~~----------------~~~Gen~~~~~ 74 (152)
.++.+++|+.||.+|..+|++||+||+.|++.|+.||+.|+.... +.+..+ ..+||||+.+.
T Consensus 2 ~~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~--~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~ 79 (127)
T TIGR02909 2 TAEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNY--FSHTSPTYGSPFDMMKKFGISYRMAGENIAYGN 79 (127)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCc--ccccCCCCCCHHHHHHHcCCCcccceeeeeccC
Confidence 467899999999999999999999999999999999999987643 222111 13599998654
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHhhcceeeEEEEEeCCCCcEEEEEEe
Q 037670 75 GMAVTPRMAVDAWVNEKTFYNHADNSCAPNHRCGVYKQVVWRKSLELGCAQATCVKQQVTLTVCFY 140 (152)
Q Consensus 75 ~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~~vC~Y 140 (152)
.++..+|+.|++ +.+|+++|+|++.++||||++.+.++. .|+|-.|
T Consensus 80 ---~~~~~~v~~W~~----------------S~gH~~nil~~~~~~~Gvg~~~~~~g~-~y~~q~F 125 (127)
T TIGR02909 80 ---STVEAVHNAWMN----------------SPGHRANILNPNYTEIGVGYVEGGSGG-IYWTQMF 125 (127)
T ss_pred ---CCHHHHHHHHHc----------------CHhHHHHHcCCCcCeEeEEEEeCCCCC-eEEEEEe
Confidence 468899999986 468999999999999999999888764 5555544
No 13
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=99.73 E-value=7.9e-17 Score=106.45 Aligned_cols=104 Identities=26% Similarity=0.321 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHhhhhcCCCccccCCC----------------CCCcceEEeccCCCC
Q 037670 15 REFLEAHNLARAAVGVAPLKWSEKLGNGTNRVVRFQRNKMGCQFANLTS----------------GKYGANQLWGSGMAV 78 (152)
Q Consensus 15 ~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~~~C~~~~~~~----------------~~~Gen~~~~~~~~~ 78 (152)
+.+++.+|.+|..++++||+||.+|+..|+.+|..|+..+. ..+... ..+|||++....
T Consensus 2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~--~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~~--- 76 (122)
T cd05379 2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGY--FSHTGPDGSSPFDRARAAGYPYSSAGENIAYGYS--- 76 (122)
T ss_pred hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCc--cCCcCCCCCCHHHHHHHcCCCcCccchhhcccCC---
Confidence 57899999999999999999999999999999999986542 222111 113899986552
Q ss_pred CHHHHHHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHhhcceeeEEEEEeCCCCcEEEEEEe
Q 037670 79 TPRMAVDAWVNEKTFYNHADNSCAPNHRCGVYKQVVWRKSLELGCAQATCVKQQVTLTVCFY 140 (152)
Q Consensus 79 ~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~~vC~Y 140 (152)
.+.++|+.|++ ..+|+.+|+++..++||||++...++. .|+|..|
T Consensus 77 ~~~~~~~~w~~----------------~~~H~~~ll~~~~~~~Gvg~~~~~~~~-~y~~~~f 121 (122)
T cd05379 77 TAEAAVDGWMN----------------SPGHRANILNPDYTEVGVGVAYGGDGG-YYWVQVF 121 (122)
T ss_pred CHHHHHHHHhC----------------CHhHHHHHcCCCcceeeEEEEeCCCCC-eEEEEec
Confidence 78999999986 367999999999999999999887653 5666654
No 14
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=99.43 E-value=1.3e-12 Score=94.52 Aligned_cols=100 Identities=26% Similarity=0.396 Sum_probs=82.3
Q ss_pred ChHHHHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHhhhhcCCCccccCCC----------------CCCcceEEec
Q 037670 10 LPAAAREFLEAHNLARAAVGVAPLKWSEKLGNGTNRVVRFQRNKMGCQFANLTS----------------GKYGANQLWG 73 (152)
Q Consensus 10 ~~~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~~~C~~~~~~~----------------~~~Gen~~~~ 73 (152)
..++.+.+++.+|++|..+++++|+||.+|+..|+.++..|+..+. +.+..+ ..+||||+.+
T Consensus 77 ~~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~g~--~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g 154 (207)
T COG2340 77 LAQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKNGY--FSHTSPTGETPADRLKKYGISGATAGENIAYG 154 (207)
T ss_pred cchhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHcCC--ccccCCCCCCHHHHHHhCCcccccccceeecC
Confidence 4678899999999999999999999999999999999999998664 222221 1379999977
Q ss_pred cCCCCCHHHHHHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHhhcceeeEEEEEeC
Q 037670 74 SGMAVTPRMAVDAWVNEKTFYNHADNSCAPNHRCGVYKQVVWRKSLELGCAQATCV 129 (152)
Q Consensus 74 ~~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~ 129 (152)
... ....+|+.|++ +.||-.+|+-...+.+|.|++.-.
T Consensus 155 ~~~--~~~~~v~~Wl~----------------S~gH~~nll~~~~~~~Gv~~~~~~ 192 (207)
T COG2340 155 SND--PPEAAVDGWLN----------------SPGHRKNLLNPAYTEIGVGVAYDA 192 (207)
T ss_pred CCC--chHHHHHHhcC----------------ChhhhhhccCcchhheeEEEEecC
Confidence 531 22799999986 568999999999999999998643
No 15
>PF11054 Surface_antigen: Sporozoite TA4 surface antigen; InterPro: IPR021288 This family of proteins is a Eukaryotic family of surface antigens. One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide [].
Probab=76.49 E-value=29 Score=25.88 Aligned_cols=132 Identities=20% Similarity=0.228 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCc-----------c-CHHHHHHHHHHHHhhhhcCCCccccCCC-CCCc----------ceE
Q 037670 14 AREFLEAHNLARAAVGVAPLK-----------W-SEKLGNGTNRVVRFQRNKMGCQFANLTS-GKYG----------ANQ 70 (152)
Q Consensus 14 ~~~il~~hN~~R~~~~m~~L~-----------W-d~~La~~A~~~a~~~~~~~~C~~~~~~~-~~~G----------en~ 70 (152)
.-+||+.+|..|...|++... . +++| .....|-+- |....... .... -..
T Consensus 35 ~~~CL~E~NaaReAAGL~~F~~A~~~~~~Lp~~~~~e~-~~~t~W~~i------C~~l~pt~~~~~~~~~~~~pf~~GTy 107 (254)
T PF11054_consen 35 SVECLSEMNAAREAAGLANFTEATSDDQKLPEPGSEEL-TDDTLWKKI------CEHLIPTQAEPAAEASKLNPFKDGTY 107 (254)
T ss_pred chhHHHHHHHHHHhcCchhhHhhcCCcccCCCCCchhc-cchhhHHHH------HHHhcCCCCcchhhccccCcCCCCce
Confidence 578999999999999854321 1 3444 445577766 43222110 0000 122
Q ss_pred Eec--cCCCCCHHHHHHHHHhhhhcCCCCCCCCC------CCCCcchHHHHHHhhcce-eeEEEEEeCCC----------
Q 037670 71 LWG--SGMAVTPRMAVDAWVNEKTFYNHADNSCA------PNHRCGVYKQVVWRKSLE-LGCAQATCVKQ---------- 131 (152)
Q Consensus 71 ~~~--~~~~~~~~~~v~~W~~e~~~y~~~~~~~~------~~~~~~hftq~vw~~t~~-vGCa~~~c~~~---------- 131 (152)
++. .....++.++|+.|-.-.++|+--.+... .+...-.|.-|...++.- .-|.+..|...
T Consensus 108 Af~~lt~~~~dCk~aVdYWKaafknF~glPPs~~~~~~lYndqdnVSFVALYNPs~~atAdC~vvTCt~tt~~~~~~~~~ 187 (254)
T PF11054_consen 108 AFKSLTDEKPDCKEAVDYWKAAFKNFTGLPPSKTAANKLYNDQDNVSFVALYNPSSSATADCRVVTCTQTTSNTAGGSRL 187 (254)
T ss_pred EeeeccCCCCChHHHHHHHHHHHhhcCCCCCChhhccccccCCcceeEEEEeCCCCCCcceeEEEeCCCCCccCCCcccc
Confidence 222 23467899999999888877754222221 122233566666666554 57999999641
Q ss_pred ---------CcEEEEEEecCCCC-CCCCCCC
Q 037670 132 ---------QVTLTVCFYDPPGN-IIGESPY 152 (152)
Q Consensus 132 ---------~~~~~vC~Y~p~gn-~~g~~~Y 152 (152)
+++-++|.-.|..- ..|..||
T Consensus 188 ~~d~~~~~~~gyAliCkT~P~Al~~~~saPF 218 (254)
T PF11054_consen 188 QGDSDSESKTGYALICKTMPAALASDGSAPF 218 (254)
T ss_pred cCCCcccccceEEEEEecCchhhcCCCCCCC
Confidence 24679999998754 4566665
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=67.62 E-value=3.5 Score=31.58 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=22.6
Q ss_pred HHHHHhhcceeeEEEEEeCCCCcEEEEEEecCCCCCC
Q 037670 111 KQVVWRKSLELGCAQATCVKQQVTLTVCFYDPPGNII 147 (152)
Q Consensus 111 tq~vw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~gn~~ 147 (152)
.-|||+..|.---..-.- ....++.|.|+|.||.+
T Consensus 78 klIvWDs~TtnK~haipl--~s~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPL--PSSWVMTCAYSPSGNFV 112 (343)
T ss_pred eEEEEEcccccceeEEec--CceeEEEEEECCCCCeE
Confidence 467888776544332221 22378999999999864
No 17
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=44.51 E-value=31 Score=18.02 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCC
Q 037670 12 AAAREFLEAHNLARAAVGVAPL 33 (152)
Q Consensus 12 ~~~~~il~~hN~~R~~~~m~~L 33 (152)
.-|++||..|=+++...|-.++
T Consensus 17 ~RRk~IL~k~PeIk~L~G~dp~ 38 (39)
T PF08557_consen 17 SRRKEILKKHPEIKKLMGPDPL 38 (39)
T ss_pred HHHHHHHHhChHHHHHhCCCCC
Confidence 4789999999999999886654
No 18
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=35.94 E-value=35 Score=20.19 Aligned_cols=15 Identities=13% Similarity=0.083 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhhcC
Q 037670 40 GNGTNRVVRFQRNKM 54 (152)
Q Consensus 40 a~~A~~~a~~~~~~~ 54 (152)
-+.||+||.++...+
T Consensus 62 pesaqrwa~q~rqe~ 76 (80)
T PF10729_consen 62 PESAQRWANQIRQEE 76 (80)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHhhhcc
Confidence 468999999987654
No 19
>PF13780 DUF4176: Domain of unknown function (DUF4176)
Probab=35.70 E-value=28 Score=21.00 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=12.0
Q ss_pred EEEEEecCCCCCCCCCC
Q 037670 135 LTVCFYDPPGNIIGESP 151 (152)
Q Consensus 135 ~~vC~Y~p~gn~~g~~~ 151 (152)
|+.|.| |.|++..+.+
T Consensus 36 Y~g~~y-P~G~~~~~~~ 51 (76)
T PF13780_consen 36 YVGCPY-PEGLIGPEET 51 (76)
T ss_pred eeEEeC-CCccCCCCce
Confidence 677877 9999875554
No 20
>COG1318 Predicted transcriptional regulators [Transcription]
Probab=33.09 E-value=38 Score=23.93 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.9
Q ss_pred CCCCccCHHHHHHHHHHHHh
Q 037670 30 VAPLKWSEKLGNGTNRVVRF 49 (152)
Q Consensus 30 m~~L~Wd~~La~~A~~~a~~ 49 (152)
..+|+|.++||..|-..|+.
T Consensus 39 ~~~lTWvdSLavAAga~are 58 (182)
T COG1318 39 YERLTWVDSLAVAAGALARE 58 (182)
T ss_pred ccccchhhHHHHHHHHHHHH
Confidence 56899999999999999875
No 21
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=31.13 E-value=58 Score=18.39 Aligned_cols=17 Identities=18% Similarity=0.470 Sum_probs=14.1
Q ss_pred CccCHHHHHHHHHHHHh
Q 037670 33 LKWSEKLGNGTNRVVRF 49 (152)
Q Consensus 33 L~Wd~~La~~A~~~a~~ 49 (152)
|+|..+-++.|++.|.-
T Consensus 1 l~Wt~~Aa~eAeavAai 17 (56)
T PF04863_consen 1 LSWTLRAAEEAEAVAAI 17 (56)
T ss_dssp -STTHHHHHHHHHHHTS
T ss_pred CchHHHHHHHHHHhhcC
Confidence 78999999999998864
No 22
>PRK10113 cell division modulator; Provisional
Probab=30.82 E-value=38 Score=19.96 Aligned_cols=15 Identities=13% Similarity=0.049 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhhhcC
Q 037670 40 GNGTNRVVRFQRNKM 54 (152)
Q Consensus 40 a~~A~~~a~~~~~~~ 54 (152)
-+.||+||+++...+
T Consensus 62 PEsAQRWAnQirQe~ 76 (80)
T PRK10113 62 PESAQRWANQIRQEG 76 (80)
T ss_pred cHHHHHHHHHhhhhh
Confidence 468999999976543
No 23
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=29.65 E-value=69 Score=28.02 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHhhC------------C----------CCCCccCHHHHHHHHHHHHhhhhc
Q 037670 11 PAAAREFLEAHNLARAAV------------G----------VAPLKWSEKLGNGTNRVVRFQRNK 53 (152)
Q Consensus 11 ~~~~~~il~~hN~~R~~~------------~----------m~~L~Wd~~La~~A~~~a~~~~~~ 53 (152)
...|+.+|+..|.-+... | |-.|-||..|++.|+...-++...
T Consensus 782 vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQk 846 (901)
T KOG4439|consen 782 VKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQK 846 (901)
T ss_pred hhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhccc
Confidence 468899999999988843 1 567999999999999988764433
No 24
>PF12960 DUF3849: Protein of unknown function (DUF3849); InterPro: IPR024383 This domain is found in a family of uncharacterised proteins found by clustering human gut metagenomic sequences [].
Probab=26.41 E-value=1.3e+02 Score=20.33 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHhhC----CCCCCccCHHHHHHHHHHHHhh
Q 037670 11 PAAAREFLEAHNLARAAV----GVAPLKWSEKLGNGTNRVVRFQ 50 (152)
Q Consensus 11 ~~~~~~il~~hN~~R~~~----~m~~L~Wd~~La~~A~~~a~~~ 50 (152)
.+..+++|+.+=.-|..+ .+..+.||..+....+.||+++
T Consensus 48 ~~a~~~vie~fG~eR~~~VLAnTIq~kd~DGRfS~~NK~WAk~~ 91 (133)
T PF12960_consen 48 PDAVKEVIEKFGYERVAYVLANTIQQKDWDGRFSQDNKDWAKTI 91 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHcC
Confidence 477888888888888887 3678899999999999999994
No 25
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=26.06 E-value=76 Score=14.14 Aligned_cols=16 Identities=13% Similarity=0.032 Sum_probs=9.9
Q ss_pred CCCCCCCChHHHHHHH
Q 037670 3 DGKPAPVLPAAAREFL 18 (152)
Q Consensus 3 ~~~p~~~~~~~~~~il 18 (152)
+..+..+-++||+.+|
T Consensus 5 ~~~~p~SNddFrkmfl 20 (21)
T PF05391_consen 5 TTAKPKSNDDFRKMFL 20 (21)
T ss_pred cccCccchHHHHHHHc
Confidence 3444455578887765
No 26
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=25.02 E-value=58 Score=22.06 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCc
Q 037670 12 AAAREFLEAHNLARAAVGVAPLK 34 (152)
Q Consensus 12 ~~~~~il~~hN~~R~~~~m~~L~ 34 (152)
.....--...|+.|.+-|++||.
T Consensus 97 ~ET~~~~~~iN~~R~~~gl~pl~ 119 (143)
T cd02164 97 PETYPGALKINRKREENGLSPLE 119 (143)
T ss_pred HHHhhhHHHHHHHHHHCCCCcee
Confidence 34455578899999999999886
No 27
>PHA00684 hypothetical protein
Probab=24.21 E-value=26 Score=23.36 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=9.3
Q ss_pred cceeeEEEEEeC
Q 037670 118 SLELGCAQATCV 129 (152)
Q Consensus 118 t~~vGCa~~~c~ 129 (152)
.|.||||++-..
T Consensus 79 VT~IGCGiAG~~ 90 (128)
T PHA00684 79 VTRVGCGLAGHL 90 (128)
T ss_pred eeeeccccccCC
Confidence 578999998543
No 28
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=23.48 E-value=82 Score=18.14 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhCCC
Q 037670 12 AAAREFLEAHNLARAAVGV 30 (152)
Q Consensus 12 ~~~~~il~~hN~~R~~~~m 30 (152)
+..+++++.+|.+|.+-|.
T Consensus 24 ~~Pe~Vi~iIN~lR~keGv 42 (63)
T PF03295_consen 24 EDPEEVINIINELRNKEGV 42 (63)
T ss_pred cCHHHHHHHHHHhhhccCc
Confidence 4567899999999998764
No 29
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=23.20 E-value=62 Score=22.45 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.8
Q ss_pred HHHHHHHHhhCCCCCCc
Q 037670 18 LEAHNLARAAVGVAPLK 34 (152)
Q Consensus 18 l~~hN~~R~~~~m~~L~ 34 (152)
-...|+.|.+.|++||+
T Consensus 106 Al~IN~~R~~~Gl~pL~ 122 (158)
T COG1019 106 ALKINEIREKRGLPPLE 122 (158)
T ss_pred HHHHHHHHHHCCCCCeE
Confidence 45689999999999987
No 30
>PF13983 YsaB: YsaB-like lipoprotein
Probab=22.80 E-value=61 Score=19.23 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=10.4
Q ss_pred EEEEEEecCCCCC
Q 037670 134 TLTVCFYDPPGNI 146 (152)
Q Consensus 134 ~~~vC~Y~p~gn~ 146 (152)
.-+||.|+|.|-.
T Consensus 59 E~FvCSFD~dGqF 71 (77)
T PF13983_consen 59 EGFVCSFDADGQF 71 (77)
T ss_pred cceEEeECCCCcE
Confidence 4699999998754
No 31
>PF11903 DUF3423: Protein of unknown function (DUF3423); InterPro: IPR021831 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 73 to 118 amino acids in length.
Probab=20.19 E-value=1.2e+02 Score=18.02 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=17.7
Q ss_pred CCCCccCHHHHHHHHHHHHh
Q 037670 30 VAPLKWSEKLGNGTNRVVRF 49 (152)
Q Consensus 30 m~~L~Wd~~La~~A~~~a~~ 49 (152)
|.+++-|++|-+.|+.++..
T Consensus 1 ~~~vri~~~L~~~ar~~a~~ 20 (72)
T PF11903_consen 1 MGSVRISDELHDQARAEAAA 20 (72)
T ss_pred CCCeeeCHHHHHHHHHHHHH
Confidence 67788999999999999987
No 32
>PLN02388 phosphopantetheine adenylyltransferase
Probab=20.02 E-value=79 Score=22.40 Aligned_cols=22 Identities=27% Similarity=0.116 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCc
Q 037670 13 AAREFLEAHNLARAAVGVAPLK 34 (152)
Q Consensus 13 ~~~~il~~hN~~R~~~~m~~L~ 34 (152)
....--..+|.+|.+-|++||.
T Consensus 118 ET~~g~~~IN~~R~e~Gl~pL~ 139 (177)
T PLN02388 118 ETLPGGLSVNKKRAERGLSQLK 139 (177)
T ss_pred hHhhhHHHHHHHHHHCCCCCeE
Confidence 3344467899999999998876
Done!