BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037671
         (187 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
 pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
 pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
 pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
 pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
 pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
 pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
           Substrate Interactions In Auxin Perception And Signaling
 pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
           Protein-Substrate Interactions In Auxin Perception And
           Signaling
 pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
           Substrate Interactions In Auxin Perception And Signaling
          Length = 594

 Score = 36.6 bits (83), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 10/73 (13%)

Query: 94  LWGLTGITDKGVVQLISRASSLQHLNI---------GGTFITDESLYAIANSCPQLKSIV 144
           LW L  I D G+  L S    L+ L +             +T++ L +++  CP+L+S V
Sbjct: 319 LWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES-V 377

Query: 145 LWSCRQVTGNGLL 157
           L+ CRQ+T   L+
Sbjct: 378 LYFCRQMTNAALI 390



 Score = 31.2 bits (69), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINV 171
           L+ + +    +TD+ L  IA S    K +VL SC   + +GL  +   C  L+ +++
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163


>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
 pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
           Peptide
          Length = 336

 Score = 36.2 bits (82), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 17/162 (10%)

Query: 12  LLRVSSVCKKW-KLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGC 70
           LL+VS VCK+W +L   +SL   + L   G  +  D T RL+  +  +      RS    
Sbjct: 29  LLKVSGVCKRWYRLASDESLW--QTLDLTGKNLHPDVTGRLL--SQGVIAFRCPRSFMDQ 84

Query: 71  QITDN-GLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDES 129
            + ++   +R+      +++  +S   L GI        +S+ S LQ+L++ G  ++D  
Sbjct: 85  PLAEHFSPFRVQHMDLSNSVIEVS--TLHGI--------LSQCSKLQNLSLEGLRLSDPI 134

Query: 130 LYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINV 171
           +  +A +   L  + L  C   +   L  L++ C RL+ +N+
Sbjct: 135 VNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175


>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
 pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
           The Skp1-Skp2 Complex
          Length = 272

 Score = 33.1 bits (74), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 18/181 (9%)

Query: 12  LLRVSSVCKKW-KLGVKQSL------ARRKNLSFAGWKMDDDSTARLVGYAYSLKELEIS 64
           LL+VS VCK+W +L   +SL       R +++  +   ++  +   ++     L+ L + 
Sbjct: 29  LLKVSGVCKRWYRLASDESLWQTLDEFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 88

Query: 65  RSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTF 124
             R    I +      + AK  SNL  ++L G +G ++  +  L+S  S L  LN+   F
Sbjct: 89  GLRLSDPIVN------TLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 141

Query: 125 -ITDESLY-AIANSCPQLKSIVLWSCRQ-VTGNGLLFLVNKCGRLESINVWGT-RLPLDC 180
             T++ +  A+A+    +  + L   R+ +  + L  LV +C  L  +++  +  L  DC
Sbjct: 142 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 201

Query: 181 F 181
           F
Sbjct: 202 F 202


>pdb|1PGV|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
           Tropomodulin C-Terminal Domain
          Length = 197

 Score = 29.3 bits (64), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 98  TGITD---KGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSC 148
           T I+D   +G+++LI  + SL+ LN+   F+T E L  +  S    +SIV +  
Sbjct: 80  TAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKA 133


>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
          Length = 169

 Score = 28.5 bits (62), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 108 LISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCR 149
           L  +  +L+HLN+ G  I D S          LKS+ L++C 
Sbjct: 88  LAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 129


>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
 pdb|2JE0|B Chain B, Crystal Structure Of Pp32
 pdb|2JE0|C Chain C, Crystal Structure Of Pp32
 pdb|2JE0|D Chain D, Crystal Structure Of Pp32
 pdb|2JE0|E Chain E, Crystal Structure Of Pp32
 pdb|2JE0|F Chain F, Crystal Structure Of Pp32
 pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
 pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
 pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
 pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
          Length = 149

 Score = 28.5 bits (62), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 104 GVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCR 149
           G+  L  +  +L HLN+ G  I D S          LKS+ L++C 
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124


>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
           Incomplete Jaz1 Degron
 pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
           Incomplete Jaz1 Degron
 pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
           Incomplete Jaz1 Degron
 pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
           Incomplete Jaz1 Degron
 pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
           Incomplete Jaz1 Degron
 pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
           Incomplete Jaz1 Degron
 pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
           Incomplete Jaz1 Degron
 pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
           Incomplete Jaz1 Degron
 pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
           The Jaz1 Degron
 pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
           The Jaz1 Degron
 pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
           The Jaz1 Degron
 pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
           The Jaz1 Degron
 pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
           The Jaz1 Degron
 pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
           The Jaz1 Degron
 pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
           The Jaz1 Degron
 pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
           The Jaz1 Degron
 pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
           Jaz1 Degron
 pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
           Jaz1 Degron
 pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
           Jaz1 Degron
 pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
           Jaz1 Degron
 pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
           Jaz1 Degron
 pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
           Jaz1 Degron
 pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
           Jaz1 Degron
 pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
           Jaz1 Degron
          Length = 592

 Score = 26.9 bits (58), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 94  LWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCR-QVT 152
           L G  G +D+G+++      +LQ L + G   ++ ++ A     P L+ + +   R  +T
Sbjct: 469 LLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528

Query: 153 GNGLL 157
           G  L+
Sbjct: 529 GQDLM 533



 Score = 26.6 bits (57), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 26/50 (52%)

Query: 99  GITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSC 148
           G+TD G+  +   + +++ + +G    +DE L   +  CP L+ + +  C
Sbjct: 449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,081,347
Number of Sequences: 62578
Number of extensions: 176938
Number of successful extensions: 387
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 13
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)