Query 037671
Match_columns 187
No_of_seqs 124 out of 1141
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 03:15:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.8 6.5E-21 1.4E-25 142.9 2.8 177 1-183 82-262 (483)
2 KOG2120 SCF ubiquitin ligase, 99.8 1.7E-19 3.7E-24 130.5 7.7 178 2-185 109-335 (419)
3 KOG4341 F-box protein containi 99.5 1.8E-14 3.8E-19 108.7 5.5 166 5-184 176-367 (483)
4 cd00116 LRR_RI Leucine-rich re 99.4 1.3E-11 2.9E-16 93.4 14.1 145 34-184 140-298 (319)
5 KOG1947 Leucine rich repeat pr 99.4 2.1E-12 4.5E-17 102.8 9.5 133 46-183 178-315 (482)
6 cd00116 LRR_RI Leucine-rich re 99.4 1.4E-11 3E-16 93.3 13.4 94 87-182 165-268 (319)
7 KOG1947 Leucine rich repeat pr 99.3 5.3E-12 1.1E-16 100.5 8.9 141 42-184 200-345 (482)
8 KOG2120 SCF ubiquitin ligase, 99.3 4.4E-12 9.5E-17 92.5 5.7 140 34-181 213-356 (419)
9 KOG1909 Ran GTPase-activating 99.1 4.7E-10 1E-14 83.4 7.7 91 84-176 210-310 (382)
10 KOG1909 Ran GTPase-activating 99.0 1.3E-09 2.7E-14 81.2 8.6 122 58-185 159-291 (382)
11 KOG3207 Beta-tubulin folding c 98.8 2.3E-09 4.9E-14 82.0 2.2 135 34-176 124-258 (505)
12 KOG3207 Beta-tubulin folding c 98.6 4E-08 8.6E-13 75.4 3.2 119 49-174 114-232 (505)
13 KOG3665 ZYG-1-like serine/thre 98.6 4.2E-07 9.1E-12 75.4 9.1 140 35-185 126-271 (699)
14 KOG3665 ZYG-1-like serine/thre 98.5 2.8E-07 6E-12 76.4 5.5 112 57-178 123-234 (699)
15 PF14580 LRR_9: Leucine-rich r 98.5 5.3E-08 1.2E-12 67.3 1.1 125 34-173 22-149 (175)
16 PF14580 LRR_9: Leucine-rich r 98.5 4.8E-08 1E-12 67.5 0.8 108 56-179 19-128 (175)
17 KOG4194 Membrane glycoprotein 98.4 4.1E-08 8.8E-13 78.1 -0.2 118 54-182 315-437 (873)
18 KOG3864 Uncharacterized conser 98.4 1.9E-07 4.1E-12 64.9 3.0 83 89-174 103-186 (221)
19 PLN00113 leucine-rich repeat r 98.3 5.6E-07 1.2E-11 77.9 4.7 64 111-177 162-225 (968)
20 PLN00113 leucine-rich repeat r 98.3 1E-06 2.2E-11 76.4 5.6 31 35-66 73-103 (968)
21 COG5238 RNA1 Ran GTPase-activa 98.3 7.6E-06 1.7E-10 59.8 8.9 72 112-184 184-262 (388)
22 KOG3864 Uncharacterized conser 98.2 1.1E-06 2.3E-11 61.3 3.4 72 114-186 102-174 (221)
23 PF12937 F-box-like: F-box-lik 98.2 4.6E-07 1E-11 48.7 1.2 33 1-34 11-44 (47)
24 COG5238 RNA1 Ran GTPase-activa 97.9 4.5E-05 9.8E-10 55.9 6.5 88 87-176 185-284 (388)
25 KOG0618 Serine/threonine phosp 97.9 5.5E-06 1.2E-10 69.3 1.8 124 35-174 363-486 (1081)
26 smart00367 LRR_CC Leucine-rich 97.9 1.8E-05 3.9E-10 36.7 2.8 25 137-161 1-25 (26)
27 KOG4194 Membrane glycoprotein 97.8 3.2E-06 6.9E-11 67.7 -0.9 62 112-176 172-233 (873)
28 smart00256 FBOX A Receptor for 97.7 3.1E-05 6.7E-10 40.0 2.4 30 1-31 8-38 (41)
29 PF13855 LRR_8: Leucine rich r 97.7 3.3E-06 7.2E-11 48.0 -1.8 61 113-176 1-61 (61)
30 KOG2982 Uncharacterized conser 97.6 2.8E-05 6E-10 57.7 2.1 102 70-174 55-156 (418)
31 KOG1259 Nischarin, modulator o 97.6 4.1E-05 9E-10 56.9 2.5 14 163-176 398-411 (490)
32 KOG2982 Uncharacterized conser 97.5 0.00014 2.9E-09 54.1 3.9 82 34-123 74-156 (418)
33 PF13516 LRR_6: Leucine Rich r 97.5 7.3E-05 1.6E-09 33.9 1.4 23 163-185 1-23 (24)
34 PF00646 F-box: F-box domain; 97.4 4.7E-05 1E-09 40.9 0.8 27 1-28 13-39 (48)
35 PF12799 LRR_4: Leucine Rich r 97.4 0.00019 4E-09 37.8 2.9 38 138-178 1-38 (44)
36 KOG2123 Uncharacterized conser 97.4 3.4E-05 7.4E-10 56.7 -0.1 110 57-182 20-133 (388)
37 smart00367 LRR_CC Leucine-rich 97.4 0.00023 5.1E-09 32.9 2.8 25 86-110 1-25 (26)
38 KOG1259 Nischarin, modulator o 97.3 0.00016 3.5E-09 53.9 2.2 33 114-147 375-408 (490)
39 PLN03150 hypothetical protein; 97.3 0.0007 1.5E-08 56.3 6.1 85 86-174 441-525 (623)
40 PF13855 LRR_8: Leucine rich r 97.2 0.00012 2.5E-09 41.5 0.6 37 86-124 24-60 (61)
41 KOG4308 LRR-containing protein 97.2 9E-05 2E-09 59.3 -0.1 17 167-183 265-281 (478)
42 PLN03210 Resistant to P. syrin 97.1 0.00057 1.2E-08 60.7 4.6 80 86-174 824-903 (1153)
43 KOG2739 Leucine-rich acidic nu 97.1 9.3E-05 2E-09 53.6 -0.6 88 84-173 62-152 (260)
44 KOG4308 LRR-containing protein 97.0 0.00031 6.8E-09 56.2 1.5 124 55-184 171-310 (478)
45 KOG0618 Serine/threonine phosp 97.0 0.00016 3.4E-09 60.9 -0.5 100 71-183 370-471 (1081)
46 PLN03150 hypothetical protein; 96.9 0.0015 3.2E-08 54.4 4.9 84 89-177 420-503 (623)
47 PF13516 LRR_6: Leucine Rich r 96.9 0.00084 1.8E-08 30.3 1.9 21 138-159 2-22 (24)
48 smart00368 LRR_RI Leucine rich 96.9 0.0013 2.7E-08 31.0 2.5 23 164-186 2-24 (28)
49 KOG1859 Leucine-rich repeat pr 96.9 5.1E-05 1.1E-09 62.5 -3.9 12 55-66 186-197 (1096)
50 PLN03210 Resistant to P. syrin 96.8 0.0011 2.3E-08 59.0 3.5 81 86-176 656-737 (1153)
51 KOG0444 Cytoskeletal regulator 96.8 0.00034 7.3E-09 57.2 0.3 16 163-178 244-259 (1255)
52 PF12799 LRR_4: Leucine Rich r 96.7 0.0021 4.4E-08 33.8 2.7 32 114-147 2-33 (44)
53 KOG0444 Cytoskeletal regulator 96.7 0.00024 5.2E-09 58.0 -1.4 72 111-184 171-244 (1255)
54 KOG2123 Uncharacterized conser 96.7 0.00053 1.1E-08 50.6 0.3 109 34-158 22-134 (388)
55 smart00368 LRR_RI Leucine rich 96.4 0.0061 1.3E-07 28.6 3.0 23 113-135 2-24 (28)
56 PRK15387 E3 ubiquitin-protein 96.2 0.0043 9.2E-08 52.7 3.4 83 88-184 383-465 (788)
57 PRK15387 E3 ubiquitin-protein 96.2 0.0089 1.9E-07 50.8 4.8 13 165-177 343-355 (788)
58 KOG2739 Leucine-rich acidic nu 96.1 0.0014 3E-08 47.7 -0.2 65 111-177 63-129 (260)
59 KOG1859 Leucine-rich repeat pr 96.0 0.0036 7.7E-08 52.2 1.7 14 85-98 107-120 (1096)
60 KOG4237 Extracellular matrix p 96.0 0.0073 1.6E-07 46.8 3.1 68 107-177 268-335 (498)
61 KOG1644 U2-associated snRNP A' 95.7 0.011 2.3E-07 41.8 2.7 86 85-174 62-150 (233)
62 PRK15370 E3 ubiquitin-protein 95.5 0.034 7.4E-07 47.3 5.6 88 87-184 346-435 (754)
63 KOG4579 Leucine-rich repeat (L 95.2 0.0085 1.8E-07 39.8 0.9 81 87-174 53-133 (177)
64 KOG1644 U2-associated snRNP A' 94.7 0.021 4.5E-07 40.4 1.9 90 51-148 59-150 (233)
65 PF13504 LRR_7: Leucine rich r 94.5 0.027 5.9E-07 23.0 1.2 14 164-177 1-14 (17)
66 KOG3763 mRNA export factor TAP 94.4 0.073 1.6E-06 43.0 4.5 87 83-171 214-308 (585)
67 KOG0617 Ras suppressor protein 94.2 0.0006 1.3E-08 46.9 -6.4 15 162-176 148-162 (264)
68 KOG0472 Leucine-rich repeat pr 94.0 0.027 5.8E-07 44.0 1.3 112 51-177 430-541 (565)
69 KOG0281 Beta-TrCP (transducin 93.8 0.037 8E-07 42.1 1.8 30 2-32 90-120 (499)
70 KOG0617 Ras suppressor protein 93.8 0.00063 1.4E-08 46.8 -6.9 107 55-176 55-185 (264)
71 PRK15370 E3 ubiquitin-protein 93.1 0.33 7.3E-06 41.5 6.5 77 87-177 220-296 (754)
72 KOG4658 Apoptotic ATPase [Sign 92.9 0.21 4.6E-06 43.5 5.0 12 136-147 640-651 (889)
73 KOG4237 Extracellular matrix p 92.5 0.043 9.2E-07 42.8 0.4 105 58-174 69-174 (498)
74 KOG0531 Protein phosphatase 1, 92.2 0.042 9.1E-07 43.5 0.1 83 85-177 116-199 (414)
75 KOG0531 Protein phosphatase 1, 91.3 0.093 2E-06 41.6 1.1 35 112-147 161-195 (414)
76 KOG4579 Leucine-rich repeat (L 91.0 0.15 3.2E-06 34.2 1.6 101 35-147 31-132 (177)
77 PF00560 LRR_1: Leucine Rich R 90.6 0.11 2.5E-06 22.6 0.6 13 165-177 1-13 (22)
78 KOG3763 mRNA export factor TAP 89.7 0.4 8.7E-06 39.0 3.3 66 111-178 216-284 (585)
79 KOG4658 Apoptotic ATPase [Sign 88.3 0.72 1.6E-05 40.4 4.1 82 86-175 570-653 (889)
80 PF07723 LRR_2: Leucine Rich R 85.6 0.71 1.5E-05 21.1 1.6 8 115-122 2-9 (26)
81 KOG0274 Cdc4 and related F-box 84.9 0.51 1.1E-05 38.8 1.5 26 1-27 118-143 (537)
82 KOG3735 Tropomodulin and leiom 84.8 5 0.00011 30.9 6.5 81 104-185 189-276 (353)
83 PLN03215 ascorbic acid mannose 84.3 0.69 1.5E-05 36.1 1.9 26 2-27 15-40 (373)
84 KOG3735 Tropomodulin and leiom 83.5 3.4 7.4E-05 31.7 5.1 100 45-147 187-292 (353)
85 smart00370 LRR Leucine-rich re 83.3 1 2.2E-05 20.2 1.6 14 164-177 2-15 (26)
86 smart00369 LRR_TYP Leucine-ric 83.3 1 2.2E-05 20.2 1.6 14 164-177 2-15 (26)
87 smart00365 LRR_SD22 Leucine-ri 82.9 1.1 2.5E-05 20.4 1.6 14 164-177 2-15 (26)
88 COG4886 Leucine-rich repeat (L 82.2 0.73 1.6E-05 36.1 1.3 17 162-178 253-269 (394)
89 COG4886 Leucine-rich repeat (L 80.8 1.1 2.5E-05 35.1 2.0 58 114-176 141-198 (394)
90 PRK15386 type III secretion pr 80.7 3.1 6.8E-05 33.1 4.3 13 54-66 50-62 (426)
91 KOG0472 Leucine-rich repeat pr 76.4 1.4 3E-05 34.9 1.2 37 110-148 502-538 (565)
92 KOG2997 F-box protein FBX9 [Ge 69.0 3.9 8.6E-05 31.2 2.1 28 5-33 126-154 (366)
93 PRK15386 type III secretion pr 63.8 7.9 0.00017 31.0 2.9 73 84-174 49-122 (426)
94 PF13306 LRR_5: Leucine rich r 61.6 3.7 8E-05 26.3 0.7 109 53-180 9-121 (129)
95 PF03382 DUF285: Mycoplasma pr 60.6 2.8 6.1E-05 27.0 -0.0 62 103-166 51-113 (120)
96 smart00364 LRR_BAC Leucine-ric 58.3 6 0.00013 18.1 0.9 14 164-177 2-15 (26)
97 smart00446 LRRcap occurring C- 46.5 16 0.00036 16.6 1.3 16 158-173 7-22 (26)
98 KOG0532 Leucine-rich repeat (L 40.9 10 0.00022 31.7 0.3 34 140-176 213-246 (722)
99 PF02495 7kD_coat: 7kD viral c 26.2 99 0.0022 17.1 2.7 18 167-184 34-51 (59)
100 KOG1665 AFH1-interacting prote 24.3 1.5E+02 0.0033 21.8 3.8 17 111-127 194-210 (302)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.81 E-value=6.5e-21 Score=142.91 Aligned_cols=177 Identities=28% Similarity=0.444 Sum_probs=142.0
Q ss_pred CccccccchhHHHHHHHhhHHHHH-HhhhhhcccceeeecccccCHHHHHHHHhcCC-CCcEEEeeeccCCcccchhhhh
Q 037671 1 FLFVFVIPFVCLLRVSSVCKKWKL-GVKQSLARRKNLSFAGWKMDDDSTARLVGYAY-SLKELEISRSRWGCQITDNGLY 78 (187)
Q Consensus 1 ~I~~~l~~~~~~~~~~~vck~w~~-~~~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~ 78 (187)
.||++|+. +.+.+++++|+.|+. ++++..|+++++--....++-..++.+.++|. .|+.|.+.++. .+.+..+.
T Consensus 82 kvFS~LDt-ksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r---~v~~sslr 157 (483)
T KOG4341|consen 82 KVFSMLDT-KSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCR---AVGDSSLR 157 (483)
T ss_pred HHHHHHhH-HHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccc---cCCcchhh
Confidence 38999996 999999999999999 55778998866522222344445666777764 58889888653 56677766
Q ss_pred hhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHH
Q 037671 79 RMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLL 157 (187)
Q Consensus 79 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 157 (187)
.. +..||++++|++.+|.++++..+..+.+.|++|++|++-. ..+++..++.++.+||+|+.|++++|+.++..+++
T Consensus 158 t~--~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~ 235 (483)
T KOG4341|consen 158 TF--ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQ 235 (483)
T ss_pred HH--hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcch
Confidence 65 5679999999999998899999999999999999999988 67888888889999999999999999999988888
Q ss_pred HHHhcCCCCcEEEeeCC-CCCHHHHHh
Q 037671 158 FLVNKCGRLESINVWGT-RLPLDCFIG 183 (187)
Q Consensus 158 ~l~~~~~~L~~L~l~~~-~i~~~~~~~ 183 (187)
.+..+|+.++.+.++|| +..++.+..
T Consensus 236 ~~~rG~~~l~~~~~kGC~e~~le~l~~ 262 (483)
T KOG4341|consen 236 ALQRGCKELEKLSLKGCLELELEALLK 262 (483)
T ss_pred HHhccchhhhhhhhcccccccHHHHHH
Confidence 88888888888877777 666666544
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.7e-19 Score=130.54 Aligned_cols=178 Identities=27% Similarity=0.398 Sum_probs=126.0
Q ss_pred ccccccchhHHHHHHHhhHHHHHHh-hhhhcccceeeecccccCHHHHHHHHhcC------------------------C
Q 037671 2 LFVFVIPFVCLLRVSSVCKKWKLGV-KQSLARRKNLSFAGWKMDDDSTARLVGYA------------------------Y 56 (187)
Q Consensus 2 I~~~l~~~~~~~~~~~vck~w~~~~-~~~l~~~~~l~~~~~~l~~~~~~~~~~~~------------------------~ 56 (187)
||+.|+ .++++.++.|||+|++.. ...+|.. +++.+..+.+..+.++.++. .
T Consensus 109 IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~--lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frs 185 (419)
T KOG2120|consen 109 IFSCLC-KKELLKVSGVCKRFYRLASDESLWQT--LDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRS 185 (419)
T ss_pred HHHhcc-HHHHHHHHHHHHHHhhccccccceee--eccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhh
Confidence 899999 699999999999999976 5578866 44444444333333332210 1
Q ss_pred CCcEEEeeeccC---------------------CcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCC
Q 037671 57 SLKELEISRSRW---------------------GCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSL 115 (187)
Q Consensus 57 ~L~~L~l~~~~~---------------------~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 115 (187)
.+++||+++... |.++.|.....++ ...+|++|+++.|.+++..++..+..+|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA---kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA---KNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh---ccccceeeccccccccchhHHHHHHHhhhhH
Confidence 244455543210 2255555555552 3578999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHH-HHhcCCccceeeccCCC-CCcHHHHHHHHhcCCCCcEEEeeCC-CCCHHHHHhhh
Q 037671 116 QHLNIGGTFITDESLYA-IANSCPQLKSIVLWSCR-QVTGNGLLFLVNKCGRLESINVWGT-RLPLDCFIGLL 185 (187)
Q Consensus 116 ~~L~l~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~L~ 185 (187)
..|+++.+....+.+.. ++.--++|..|+++||. .+.+..++.++..||+|.+||+++| .++++.+++++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 99999986655544433 34445778889998863 3566678888899999999999998 88888777664
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.52 E-value=1.8e-14 Score=108.73 Aligned_cols=166 Identities=25% Similarity=0.321 Sum_probs=103.7
Q ss_pred cccchhHHHHHHHhhHHHHHHhhhhhcccceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhh--
Q 037671 5 FVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSF-- 82 (187)
Q Consensus 5 ~l~~~~~~~~~~~vck~w~~~~~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~-- 82 (187)
++.. .....++++|+.|+.+...+ -..+++..++.+...|++|+.|+++++. .++..+++.+..
T Consensus 176 ~iTd-~s~~sla~~C~~l~~l~L~~----------c~~iT~~~Lk~la~gC~kL~~lNlSwc~---qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 176 KITD-SSLLSLARYCRKLRHLNLHS----------CSSITDVSLKYLAEGCRKLKYLNLSWCP---QISGNGVQALQRGC 241 (483)
T ss_pred eccH-HHHHHHHHhcchhhhhhhcc----------cchhHHHHHHHHHHhhhhHHHhhhccCc---hhhcCcchHHhccc
Confidence 4553 66788888888888743221 1234555566677777777777777653 555555444421
Q ss_pred ----------------------hccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCHHHHHHHHhcCCc
Q 037671 83 ----------------------AKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESLYAIANSCPQ 139 (187)
Q Consensus 83 ----------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~ 139 (187)
+.+++.+..+++..|..+++.++..+...+..|+.|+.++ .+++|..+..+..++++
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 2334444455555555566666666655666667777666 56667777777777777
Q ss_pred cceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC-CCCHHHHHhh
Q 037671 140 LKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT-RLPLDCFIGL 184 (187)
Q Consensus 140 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~L 184 (187)
|+.+.+.+|..+++.++..++.+|+.|+.+++.++ .++|..+..+
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence 77777777777777777777777777777777777 4444445444
No 4
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=1.3e-11 Score=93.37 Aligned_cols=145 Identities=24% Similarity=0.301 Sum_probs=76.0
Q ss_pred ceeeecccccCHHHH---HHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh-ccCCCccEEEecCCCCCCHHHHHHHH
Q 037671 34 KNLSFAGWKMDDDST---ARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGITDKGVVQLI 109 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~ 109 (187)
+.+++.++.++.... ......++.|+.|++++| .+++.++..+... ..+++|++|++++|. +++.+...+.
T Consensus 140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n----~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~ 214 (319)
T cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANN----GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALA 214 (319)
T ss_pred eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC----CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHH
Confidence 344555555442222 222233445666666543 4444444333211 223466666666664 5554443332
Q ss_pred ---hcCCCCCEEEecCCCCCHHHHHHHHhcC----CccceeeccCCCCCcHHHHHHHHhc---CCCCcEEEeeCCCCCHH
Q 037671 110 ---SRASSLQHLNIGGTFITDESLYAIANSC----PQLKSIVLWSCRQVTGNGLLFLVNK---CGRLESINVWGTRLPLD 179 (187)
Q Consensus 110 ---~~~~~L~~L~l~~~~~~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~i~~~ 179 (187)
..+++|+.|+++++.+++.++..++..+ +.|++|++++| .+++.+...+++. +++|+++++++|.++++
T Consensus 215 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 2456677777777666666666555543 46777777664 5555554444332 35667777777777766
Q ss_pred HHHhh
Q 037671 180 CFIGL 184 (187)
Q Consensus 180 ~~~~L 184 (187)
+...+
T Consensus 294 ~~~~~ 298 (319)
T cd00116 294 GAQLL 298 (319)
T ss_pred HHHHH
Confidence 65444
No 5
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.39 E-value=2.1e-12 Score=102.79 Aligned_cols=133 Identities=29% Similarity=0.431 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecC-CCCCCHHH--HHHHHhcCCCCCEEEecC
Q 037671 46 DSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWG-LTGITDKG--VVQLISRASSLQHLNIGG 122 (187)
Q Consensus 46 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~-~~~~~~~~--~~~~~~~~~~L~~L~l~~ 122 (187)
.....+...++.++.+.+..+. .+++.++..+ +..+++|+.|++++ +..+...+ ...+.+.+++|+.|++++
T Consensus 178 ~~~~~l~~~~~~L~~l~l~~~~---~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 252 (482)
T KOG1947|consen 178 KILLRLLSSCPLLKRLSLSGCS---KITDDSLDAL--ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG 252 (482)
T ss_pred HHHHHHHhhCchhhHhhhcccc---cCChhhHHHH--HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh
Confidence 3344444445555555554321 3444433332 23345555555544 11111111 222333445555555555
Q ss_pred CC-CCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC-CCCHHHHHh
Q 037671 123 TF-ITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT-RLPLDCFIG 183 (187)
Q Consensus 123 ~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~ 183 (187)
+. ++|.++..++..||+|++|.+.+|..++++++..+++.||+|++|++++| .+++.++..
T Consensus 253 ~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~ 315 (482)
T KOG1947|consen 253 CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEA 315 (482)
T ss_pred hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHH
Confidence 32 55555555555555555555544444555555555555555555555554 334444433
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.39 E-value=1.4e-11 Score=93.30 Aligned_cols=94 Identities=21% Similarity=0.206 Sum_probs=45.8
Q ss_pred CCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEecCCCCCHHHHHHH---HhcCCccceeeccCCCCCcHHHHHHHH
Q 037671 87 SNLTSISLWGLTGITDKGVVQLIS---RASSLQHLNIGGTFITDESLYAI---ANSCPQLKSIVLWSCRQVTGNGLLFLV 160 (187)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l~ 160 (187)
++|+.|+++++. +++.++..+.. .+++|+.|+++++.+++.++..+ ...+++|++|++++| .+++.++..++
T Consensus 165 ~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~ 242 (319)
T cd00116 165 RDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALA 242 (319)
T ss_pred CCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHH
Confidence 445555555443 44444333322 23355555555555554443332 223445556666553 45555555554
Q ss_pred hcC----CCCcEEEeeCCCCCHHHHH
Q 037671 161 NKC----GRLESINVWGTRLPLDCFI 182 (187)
Q Consensus 161 ~~~----~~L~~L~l~~~~i~~~~~~ 182 (187)
..+ +.|++|++++|.+++++..
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~ 268 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAK 268 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHH
Confidence 443 4566666666655554443
No 7
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.34 E-value=5.3e-12 Score=100.49 Aligned_cols=141 Identities=31% Similarity=0.436 Sum_probs=114.0
Q ss_pred ccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEec
Q 037671 42 KMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIG 121 (187)
Q Consensus 42 ~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 121 (187)
.+.+..+..+...++.|+.|+++.+. ...+..+.........|++|+.++++++..+++.++..+...|++|+.|.+.
T Consensus 200 ~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~ 277 (482)
T KOG1947|consen 200 KITDDSLDALALKCPNLEELDLSGCC--LLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLS 277 (482)
T ss_pred cCChhhHHHHHhhCchhheecccCcc--cccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccC
Confidence 45666688899999999999998521 1233333222223566899999999999889999999999999999999988
Q ss_pred CCC-CCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCC----CCHHHHHhh
Q 037671 122 GTF-ITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTR----LPLDCFIGL 184 (187)
Q Consensus 122 ~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~----i~~~~~~~L 184 (187)
++. ++++++..++..||.|++|++++|..+++.++..++..||+|+.|.+.... +++.++..+
T Consensus 278 ~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 278 NCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred CCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 866 899999999999999999999999999999999999899998887765543 666665543
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.4e-12 Score=92.54 Aligned_cols=140 Identities=21% Similarity=0.293 Sum_probs=86.7
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHH-hcC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLI-SRA 112 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~ 112 (187)
+.+++.|.++.|.....+++ -.+|++|+++.+. .+++.++..+ -..|..|.+|++++|...++. +..+. .-.
T Consensus 213 k~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~s---G~t~n~~~ll--~~scs~L~~LNlsWc~l~~~~-Vtv~V~his 285 (419)
T KOG2120|consen 213 KNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCS---GFTENALQLL--LSSCSRLDELNLSWCFLFTEK-VTVAVAHIS 285 (419)
T ss_pred hhccccccccCcHHHHHHhc-cccceeecccccc---ccchhHHHHH--HHhhhhHhhcCchHhhccchh-hhHHHhhhc
Confidence 55777788887777766665 4678888888653 7888888776 356888888888888744444 33222 234
Q ss_pred CCCCEEEecC--CCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC-CCCHHHH
Q 037671 113 SSLQHLNIGG--TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT-RLPLDCF 181 (187)
Q Consensus 113 ~~L~~L~l~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~ 181 (187)
++|+.|+++| ..+.+..+..++..||+|-+|+++.|..+++..+..+ -..+.|++|.++.| .|.++-+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~lSlsRCY~i~p~~~ 356 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHLSLSRCYDIIPETL 356 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH-HhcchheeeehhhhcCCChHHe
Confidence 5666666666 3455555666666666666666666655655333333 23555566655555 4444433
No 9
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=4.7e-10 Score=83.40 Aligned_cols=91 Identities=29% Similarity=0.375 Sum_probs=37.6
Q ss_pred ccCCCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEecCCCCCHHHHHHH----HhcCCccceeeccCCCCCcHHHH
Q 037671 84 KCISNLTSISLWGLTGITDKGVVQLIS---RASSLQHLNIGGTFITDESLYAI----ANSCPQLKSIVLWSCRQVTGNGL 156 (187)
Q Consensus 84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l----~~~~~~L~~L~l~~~~~~~~~~~ 156 (187)
.+|++|+.|++..+. ++..+-..+.+ .++.|+.|++++|.+.+++..++ -...|.|++|.+.+| .++..+.
T Consensus 210 ~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~ 287 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAA 287 (382)
T ss_pred HhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHH
Confidence 334444444444333 33333333322 23344444444444444433222 223344455554442 4444443
Q ss_pred HHHHhc---CCCCcEEEeeCCCC
Q 037671 157 LFLVNK---CGRLESINVWGTRL 176 (187)
Q Consensus 157 ~~l~~~---~~~L~~L~l~~~~i 176 (187)
..++.. -|.|+.|+|++|.+
T Consensus 288 ~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 288 LALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhcchhhHHhcCCcccc
Confidence 333321 24455555555544
No 10
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=1.3e-09 Score=81.15 Aligned_cols=122 Identities=22% Similarity=0.359 Sum_probs=82.5
Q ss_pred CcEEEeeeccCCcccchhhhhhhhhh-ccCCCccEEEecCCCCCCHHHHH---HHHhcCCCCCEEEecCCCCCHHHHHHH
Q 037671 58 LKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGITDKGVV---QLISRASSLQHLNIGGTFITDESLYAI 133 (187)
Q Consensus 58 L~~L~l~~~~~~~~~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~l 133 (187)
|+.+...+| ++.+.+...++.+ +.++.|+.+.++.+. |...++. .-+.+|+.|+.|++.+|.++.++-..+
T Consensus 159 Lrv~i~~rN----rlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 159 LRVFICGRN----RLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred eEEEEeecc----ccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 444444443 4455555554322 445778888887554 6666553 334468889999998888888876666
Q ss_pred Hh---cCCccceeeccCCCCCcHHHHHHHHh----cCCCCcEEEeeCCCCCHHHHHhhh
Q 037671 134 AN---SCPQLKSIVLWSCRQVTGNGLLFLVN----KCGRLESINVWGTRLPLDCFIGLL 185 (187)
Q Consensus 134 ~~---~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~i~~~~~~~L~ 185 (187)
+. .+|.|++|+++.| .+.+.|..+++. ..|.|+.|.+.+|.|+.++...++
T Consensus 234 akaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la 291 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA 291 (382)
T ss_pred HHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH
Confidence 54 4566888888888 677777666553 458889999999988888776654
No 11
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.3e-09 Score=82.02 Aligned_cols=135 Identities=13% Similarity=0.165 Sum_probs=74.2
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+++.+.++.+.........+.|++++.|||++|- -...-....++...|+|+.|+++.+. +....=...--..+
T Consensus 124 ~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-----~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 124 REISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-----FHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLS 197 (505)
T ss_pred hheeecCccccccchhhhhhhCCcceeecchhhh-----HHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhh
Confidence 4566777766666655677777888888887652 22222222234567777777776543 11100000011356
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL 176 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i 176 (187)
.|+.|.++.|+++...+..+...||.|+.|++..+..+..+... .+..+.|++|||++|++
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNL 258 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCcc
Confidence 67777777777777777777777777777777664222211111 11223566666666643
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=4e-08 Score=75.37 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=90.1
Q ss_pred HHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHH
Q 037671 49 ARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDE 128 (187)
Q Consensus 49 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 128 (187)
.+-......|+.+.|.++ .+...+.+.. ++.|++++.|+++.+---....+..++...|+|+.|+++.|.+...
T Consensus 114 ~akQsn~kkL~~IsLdn~----~V~~~~~~~~--~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 114 AAKQSNLKKLREISLDNY----RVEDAGIEEY--SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred HHHhhhHHhhhheeecCc----cccccchhhh--hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence 333344567888888865 4555554333 3569999999999775445667888999999999999998654432
Q ss_pred HHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC
Q 037671 129 SLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT 174 (187)
Q Consensus 129 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 174 (187)
.-......++.+++|.++.| .++...+..++..+|+|+.|.+.+|
T Consensus 188 ~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 188 ISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred ccccchhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 22223336788999999998 8889999999999999999999998
No 13
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.56 E-value=4.2e-07 Score=75.38 Aligned_cols=140 Identities=19% Similarity=0.230 Sum_probs=87.3
Q ss_pred eeeecccc-cCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 35 NLSFAGWK-MDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 35 ~l~~~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+++++|.. +.......+...+|.|++|.+++ ..+..+.+..+ ...+|+|..|++|+++ ++.- ...+..+
T Consensus 126 ~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~----~~~~~~dF~~l--c~sFpNL~sLDIS~Tn-I~nl---~GIS~Lk 195 (699)
T KOG3665|consen 126 HLDISGSELFSNGWPKKIGTMLPSLRSLVISG----RQFDNDDFSQL--CASFPNLRSLDISGTN-ISNL---SGISRLK 195 (699)
T ss_pred hcCccccchhhccHHHHHhhhCcccceEEecC----ceecchhHHHH--hhccCccceeecCCCC-ccCc---HHHhccc
Confidence 34444432 23334455666678888888774 24444444444 3457888888887775 4433 2334567
Q ss_pred CCCEEEecCCCCCH-HHHHHHHhcCCccceeeccCCCCCcHH-HHHHHH---hcCCCCcEEEeeCCCCCHHHHHhhh
Q 037671 114 SLQHLNIGGTFITD-ESLYAIANSCPQLKSIVLWSCRQVTGN-GLLFLV---NKCGRLESINVWGTRLPLDCFIGLL 185 (187)
Q Consensus 114 ~L~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~---~~~~~L~~L~l~~~~i~~~~~~~L~ 185 (187)
+|+.|.+.+-.+.+ ..+..+++ +++|+.||++.-....+. -+.... ..+|+|+.||.+|+.++++.++.+.
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL 271 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence 77777777744443 44555554 888999999875443333 233222 3469999999999999988877654
No 14
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.46 E-value=2.8e-07 Score=76.43 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=57.4
Q ss_pred CCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhc
Q 037671 57 SLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANS 136 (187)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 136 (187)
+|++|++++.. .+.......+ +..+|.|++|.+.+.. +....+..++..+|+|..||++++++++- .--.+
T Consensus 123 nL~~LdI~G~~---~~s~~W~~ki--g~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~ 193 (699)
T KOG3665|consen 123 NLQHLDISGSE---LFSNGWPKKI--GTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTNISNL---SGISR 193 (699)
T ss_pred hhhhcCccccc---hhhccHHHHH--hhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCCccCc---HHHhc
Confidence 35555555421 3444444444 3445556666555443 43444555555556666666665555442 11123
Q ss_pred CCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 137 CPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
+++||.|.+.+-.--+...+..++ .+++|+.||+|.....+
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNND 234 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHh-cccCCCeeecccccccc
Confidence 555555555432222224445555 47889999998774433
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.46 E-value=5.3e-08 Score=67.26 Aligned_cols=125 Identities=22% Similarity=0.284 Sum_probs=46.3
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+++++.+..++. ++.+...+..|+.|++++| .++.- ..+ ..+++|+.|+++.+. ++..+ ..+.+.+|
T Consensus 22 ~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N----~I~~l--~~l---~~L~~L~~L~L~~N~-I~~i~-~~l~~~lp 88 (175)
T PF14580_consen 22 RELNLRGNQIST--IENLGATLDKLEVLDLSNN----QITKL--EGL---PGLPRLKTLDLSNNR-ISSIS-EGLDKNLP 88 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS------S----TT-------TT--EEE--SS----S-C-HHHHHH-T
T ss_pred cccccccccccc--ccchhhhhcCCCEEECCCC----CCccc--cCc---cChhhhhhcccCCCC-CCccc-cchHHhCC
Confidence 567777776553 3444445678888888876 33321 111 235888888887665 55432 12334578
Q ss_pred CCCEEEecCCCCCH-HHHHHHHhcCCccceeeccCCCCCcHH-H-HHHHHhcCCCCcEEEeeC
Q 037671 114 SLQHLNIGGTFITD-ESLYAIANSCPQLKSIVLWSCRQVTGN-G-LLFLVNKCGRLESINVWG 173 (187)
Q Consensus 114 ~L~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~-~-~~~l~~~~~~L~~L~l~~ 173 (187)
+|+.|.+++|.+.+ ..+..+. .+|+|+.|++.++ .+++. . -..+...+|+|+.||-..
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~-~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLS-SLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGG-G-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cCCEEECcCCcCCChHHhHHHH-cCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEE
Confidence 89999998877765 2234443 4888999999875 44432 2 334556788888887653
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.45 E-value=4.8e-08 Score=67.46 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=40.1
Q ss_pred CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCH-HHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 037671 56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITD-KGVVQLISRASSLQHLNIGGTFITDESLYAIA 134 (187)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 134 (187)
..++.|++.++ .++.- +.+ +..+.+|+.|+++.+. ++. .++ ..++.|++|++++|.+++-+ ..+.
T Consensus 19 ~~~~~L~L~~n----~I~~I--e~L--~~~l~~L~~L~Ls~N~-I~~l~~l----~~L~~L~~L~L~~N~I~~i~-~~l~ 84 (175)
T PF14580_consen 19 VKLRELNLRGN----QISTI--ENL--GATLDKLEVLDLSNNQ-ITKLEGL----PGLPRLKTLDLSNNRISSIS-EGLD 84 (175)
T ss_dssp -----------------------S----TT-TT--EEE-TTS---S--TT--------TT--EEE--SS---S-C-HHHH
T ss_pred ccccccccccc----ccccc--cch--hhhhcCCCEEECCCCC-CccccCc----cChhhhhhcccCCCCCCccc-cchH
Confidence 35788999865 44432 222 2235789999999886 443 222 34799999999998887531 1233
Q ss_pred hcCCccceeeccCCCCCcHH-HHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671 135 NSCPQLKSIVLWSCRQVTGN-GLLFLVNKCGRLESINVWGTRLPLD 179 (187)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~i~~~ 179 (187)
..+|+|++|++++ +.+.+- .+..+ +.+|+|+.|++.+|++++.
T Consensus 85 ~~lp~L~~L~L~~-N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 85 KNLPNLQELYLSN-NKISDLNELEPL-SSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp HH-TT--EEE-TT-S---SCCCCGGG-GG-TT--EEE-TT-GGGGS
T ss_pred HhCCcCCEEECcC-CcCCChHHhHHH-HcCCCcceeeccCCcccch
Confidence 4689999999988 466553 34444 4699999999999988754
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.42 E-value=4.1e-08 Score=78.11 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=69.2
Q ss_pred cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCH--HHHH
Q 037671 54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITD--ESLY 131 (187)
Q Consensus 54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~ 131 (187)
+++.|+.|+|+.|. -..+.+..+..+ ..|++|+++.+. ++.-.-. ....+++|+.|+|.+|.+.. +...
T Consensus 315 ftqkL~~LdLs~N~-i~~l~~~sf~~L------~~Le~LnLs~Ns-i~~l~e~-af~~lssL~~LdLr~N~ls~~IEDaa 385 (873)
T KOG4194|consen 315 FTQKLKELDLSSNR-ITRLDEGSFRVL------SQLEELNLSHNS-IDHLAEG-AFVGLSSLHKLDLRSNELSWCIEDAA 385 (873)
T ss_pred hcccceeEeccccc-cccCChhHHHHH------HHhhhhcccccc-hHHHHhh-HHHHhhhhhhhcCcCCeEEEEEecch
Confidence 45666666666552 123333443332 456666666443 3322111 22346889999999865442 1122
Q ss_pred HHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC---CHHHHH
Q 037671 132 AIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL---PLDCFI 182 (187)
Q Consensus 132 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i---~~~~~~ 182 (187)
....++|.|++|++.+ +.+..-.- +-+++++.|++|||++|.| -.+++.
T Consensus 386 ~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred hhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCCcceeecccccc
Confidence 3345599999999988 46654443 3346899999999999944 445443
No 18
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=1.9e-07 Score=64.88 Aligned_cols=83 Identities=20% Similarity=0.396 Sum_probs=66.0
Q ss_pred ccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCc
Q 037671 89 LTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLE 167 (187)
Q Consensus 89 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 167 (187)
++.++-+++. |...|+..+.. ++.++.|.+.+ ..+.|..+..++.-.|+|++|++++|+.||+.|+.-+. .+++|+
T Consensus 103 IeaVDAsds~-I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSS-IMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred EEEEecCCch-HHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 5666666665 78888877754 78888888888 57888888888888888999999999899999887775 488888
Q ss_pred EEEeeCC
Q 037671 168 SINVWGT 174 (187)
Q Consensus 168 ~L~l~~~ 174 (187)
.|.+.+=
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 8877653
No 19
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.34 E-value=5.6e-07 Score=77.94 Aligned_cols=64 Identities=23% Similarity=0.226 Sum_probs=29.7
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 111 RASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 111 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
.+++|+.|+++++.+....-..+. .+++|++|++++| .++......+ ..+++|+.|++++|.++
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASN-QLVGQIPREL-GQMKSLKWIYLGYNNLS 225 (968)
T ss_pred cCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCC-CCcCcCChHH-cCcCCccEEECcCCccC
Confidence 355555555555444322111222 2555666666554 2222111112 24566666666666554
No 20
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.31 E-value=1e-06 Score=76.42 Aligned_cols=31 Identities=6% Similarity=0.194 Sum_probs=14.9
Q ss_pred eeeecccccCHHHHHHHHhcCCCCcEEEeeec
Q 037671 35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRS 66 (187)
Q Consensus 35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 66 (187)
.+++.+..+... ....+..+++|+.|++++|
T Consensus 73 ~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n 103 (968)
T PLN00113 73 SIDLSGKNISGK-ISSAIFRLPYIQTINLSNN 103 (968)
T ss_pred EEEecCCCcccc-CChHHhCCCCCCEEECCCC
Confidence 445554443321 1223344566666666654
No 21
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.29 E-value=7.6e-06 Score=59.80 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=43.7
Q ss_pred CCCCCEEEecCCCCCHHHHHHH----HhcCCccceeeccCCCCCcHHHHHHHHhc---CCCCcEEEeeCCCCCHHHHHhh
Q 037671 112 ASSLQHLNIGGTFITDESLYAI----ANSCPQLKSIVLWSCRQVTGNGLLFLVNK---CGRLESINVWGTRLPLDCFIGL 184 (187)
Q Consensus 112 ~~~L~~L~l~~~~~~~~~~~~l----~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~i~~~~~~~L 184 (187)
-.+|+.+.+..|.+.++++..+ ..+|++|+.|++.. +.++-.+-..++.. ++.|++|.+.+|.++.+|....
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 3567777777777776655443 24566777777766 45555554444432 3556777777776666665443
No 22
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=1.1e-06 Score=61.25 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=64.4
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC-CCCHHHHHhhhc
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT-RLPLDCFIGLLT 186 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~L~~ 186 (187)
.++.++=++..+..+|+..+-. ++.++.|.+..|.++.|.+++.++...|+|+.|++++| .||+.|+..|..
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH
Confidence 3678888888999999988765 89999999999999999999999998899999999999 999999877653
No 23
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.23 E-value=4.6e-07 Score=48.71 Aligned_cols=33 Identities=36% Similarity=0.559 Sum_probs=27.0
Q ss_pred CccccccchhHHHHHHHhhHHHHHHh-hhhhcccc
Q 037671 1 FLFVFVIPFVCLLRVSSVCKKWKLGV-KQSLARRK 34 (187)
Q Consensus 1 ~I~~~l~~~~~~~~~~~vck~w~~~~-~~~l~~~~ 34 (187)
.||+||+ .+|+.++++|||+|++++ .+.+|++.
T Consensus 11 ~If~~L~-~~dl~~~~~vcr~w~~~~~~~~lW~~~ 44 (47)
T PF12937_consen 11 EIFSYLD-PRDLLRLSLVCRRWRRIANDNSLWRRL 44 (47)
T ss_dssp HHHTTS--HHHHHHHTTSSHHHHHHHTCCCHHHHH
T ss_pred HHHhcCC-HHHHHHHHHHHHHHHHHHCChhhhhhh
Confidence 3899999 599999999999999987 44777653
No 24
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.91 E-value=4.5e-05 Score=55.89 Aligned_cols=88 Identities=20% Similarity=0.241 Sum_probs=66.2
Q ss_pred CCccEEEecCCCCCCHHHHHHHHh----cCCCCCEEEecCCCCCHHHHHHHHh---cCCccceeeccCCCCCcHHHHHHH
Q 037671 87 SNLTSISLWGLTGITDKGVVQLIS----RASSLQHLNIGGTFITDESLYAIAN---SCPQLKSIVLWSCRQVTGNGLLFL 159 (187)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l 159 (187)
.+|+.+.+..+ .|.+.|+.+++. .+.+|+.|++.+|.++..+-..++. .++.|++|.++.| .++..|...+
T Consensus 185 ~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC-lls~~G~~~v 262 (388)
T COG5238 185 ENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC-LLSNEGVKSV 262 (388)
T ss_pred cCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch-hhccccHHHH
Confidence 46777777655 488887766554 5899999999999999887766654 3566899999998 7777776666
Q ss_pred Hhc-----CCCCcEEEeeCCCC
Q 037671 160 VNK-----CGRLESINVWGTRL 176 (187)
Q Consensus 160 ~~~-----~~~L~~L~l~~~~i 176 (187)
... .|+|..|...+|.+
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HHHhhhhcCCCccccccchhhh
Confidence 543 38888887777744
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.89 E-value=5.5e-06 Score=69.30 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=69.0
Q ss_pred eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671 35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS 114 (187)
Q Consensus 35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 114 (187)
.+.+.++++++..++. +.+.++|+.|++++|.. ..+++..+.. .+.|++|++|++. ++.-. .-...++.
T Consensus 363 ~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL-~~fpas~~~k------le~LeeL~LSGNk-L~~Lp--~tva~~~~ 431 (1081)
T KOG0618|consen 363 ELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRL-NSFPASKLRK------LEELEELNLSGNK-LTTLP--DTVANLGR 431 (1081)
T ss_pred HHHHhcCcccccchhh-hccccceeeeeeccccc-ccCCHHHHhc------hHHhHHHhcccch-hhhhh--HHHHhhhh
Confidence 4566777777766654 45678999999998731 1344554433 4778899998875 33221 11223555
Q ss_pred CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC
Q 037671 115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT 174 (187)
Q Consensus 115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 174 (187)
|++|..-+|.+... -.++ ..|.|+.+|++. ++++...+..... .|+|++||++||
T Consensus 432 L~tL~ahsN~l~~f--Pe~~-~l~qL~~lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 432 LHTLRAHSNQLLSF--PELA-QLPQLKVLDLSC-NNLSEVTLPEALP-SPNLKYLDLSGN 486 (1081)
T ss_pred hHHHhhcCCceeec--hhhh-hcCcceEEeccc-chhhhhhhhhhCC-CcccceeeccCC
Confidence 56555555433210 0122 245566666653 4555444433222 256666666666
No 26
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.87 E-value=1.8e-05 Score=36.72 Aligned_cols=25 Identities=36% Similarity=0.772 Sum_probs=16.9
Q ss_pred CCccceeeccCCCCCcHHHHHHHHh
Q 037671 137 CPQLKSIVLWSCRQVTGNGLLFLVN 161 (187)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~l~~ 161 (187)
||+|++|++++|..++|.++..+++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5667777777777777777666653
No 27
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.80 E-value=3.2e-06 Score=67.69 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=34.5
Q ss_pred CCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC
Q 037671 112 ASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL 176 (187)
Q Consensus 112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i 176 (187)
..+++.|+|++|.+++-+...+.. +..|-+|.++. +.++.-.. ..++.+|+|+.|+|..|+|
T Consensus 172 ~~ni~~L~La~N~It~l~~~~F~~-lnsL~tlkLsr-NrittLp~-r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 172 KVNIKKLNLASNRITTLETGHFDS-LNSLLTLKLSR-NRITTLPQ-RSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred CCCceEEeeccccccccccccccc-cchheeeeccc-CcccccCH-HHhhhcchhhhhhccccce
Confidence 356777777777666543333322 33566666665 35554442 2334566666666666644
No 28
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.71 E-value=3.1e-05 Score=39.97 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=25.0
Q ss_pred CccccccchhHHHHHHHhhHHHHHHhh-hhhc
Q 037671 1 FLFVFVIPFVCLLRVSSVCKKWKLGVK-QSLA 31 (187)
Q Consensus 1 ~I~~~l~~~~~~~~~~~vck~w~~~~~-~~l~ 31 (187)
.||.|++ ..|+..+++|||+|+.++. +.+|
T Consensus 8 ~I~~~l~-~~d~~~~~~vc~~~~~~~~~~~~~ 38 (41)
T smart00256 8 EILSKLP-PKDLLRLRKVSRRWRSLIDSHDFW 38 (41)
T ss_pred HHHHcCC-HHHHHHHHHHHHHHHHHhcChhhh
Confidence 3799999 4999999999999999774 3454
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.68 E-value=3.3e-06 Score=47.99 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=37.4
Q ss_pred CCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC
Q 037671 113 SSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL 176 (187)
Q Consensus 113 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i 176 (187)
|+|+.|+++++.++.-. ......+++|++|+++++ .++.-.- ..+.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~-~~~f~~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIP-PDSFSNLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEEC-TTTTTTGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccC-HHHHcCCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 56777888776555211 122345777888888764 5543332 2345678888888888764
No 30
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=2.8e-05 Score=57.65 Aligned_cols=102 Identities=11% Similarity=0.183 Sum_probs=60.1
Q ss_pred cccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCC
Q 037671 70 CQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCR 149 (187)
Q Consensus 70 ~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 149 (187)
+.+...|-... ++..+.+++++++.++.-.....+..+.+.+|.|+.|+++.|.+... +..+.--..+|++|.+++ .
T Consensus 55 ~~id~~gd~~~-~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNg-T 131 (418)
T KOG2982|consen 55 SIIDNEGDVML-FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNG-T 131 (418)
T ss_pred CCCCcchhHHH-HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcC-C
Confidence 44544443221 34556777777776665333455666667777777777777666543 222211134577777766 4
Q ss_pred CCcHHHHHHHHhcCCCCcEEEeeCC
Q 037671 150 QVTGNGLLFLVNKCGRLESINVWGT 174 (187)
Q Consensus 150 ~~~~~~~~~l~~~~~~L~~L~l~~~ 174 (187)
+++......+....|.+.+|.+++|
T Consensus 132 ~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 132 GLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred CCChhhhhhhhhcchhhhhhhhccc
Confidence 6666666666666777777777766
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.60 E-value=4.1e-05 Score=56.91 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=8.2
Q ss_pred CCCCcEEEeeCCCC
Q 037671 163 CGRLESINVWGTRL 176 (187)
Q Consensus 163 ~~~L~~L~l~~~~i 176 (187)
+|.|+++.+.+|++
T Consensus 398 LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 398 LPCLETLRLTGNPL 411 (490)
T ss_pred ccHHHHHhhcCCCc
Confidence 55666666666644
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.00014 Score=54.12 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=44.4
Q ss_pred ceeeecccccC-HHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcC
Q 037671 34 KNLSFAGWKMD-DDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRA 112 (187)
Q Consensus 34 ~~l~~~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 112 (187)
++++++++.+. ...+..+.+.+|.|+.|++++|+.+..+. .+ .....+|+.+.+.+.. ++......+.+..
T Consensus 74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-----~l--p~p~~nl~~lVLNgT~-L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-----SL--PLPLKNLRVLVLNGTG-LSWTQSTSSLDDL 145 (418)
T ss_pred hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-----cC--cccccceEEEEEcCCC-CChhhhhhhhhcc
Confidence 34555555544 23455666677777777777663221111 11 0123566666665443 6666666666666
Q ss_pred CCCCEEEecCC
Q 037671 113 SSLQHLNIGGT 123 (187)
Q Consensus 113 ~~L~~L~l~~~ 123 (187)
|.++.|+++.|
T Consensus 146 P~vtelHmS~N 156 (418)
T KOG2982|consen 146 PKVTELHMSDN 156 (418)
T ss_pred hhhhhhhhccc
Confidence 66666666654
No 33
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=97.45 E-value=7.3e-05 Score=33.89 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=15.9
Q ss_pred CCCCcEEEeeCCCCCHHHHHhhh
Q 037671 163 CGRLESINVWGTRLPLDCFIGLL 185 (187)
Q Consensus 163 ~~~L~~L~l~~~~i~~~~~~~L~ 185 (187)
+++|++|++++|.|+++|+..|.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46788888888888888887764
No 34
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.45 E-value=4.7e-05 Score=40.90 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=22.0
Q ss_pred CccccccchhHHHHHHHhhHHHHHHhhh
Q 037671 1 FLFVFVIPFVCLLRVSSVCKKWKLGVKQ 28 (187)
Q Consensus 1 ~I~~~l~~~~~~~~~~~vck~w~~~~~~ 28 (187)
+||.|++ +.+++++++|||.|++++..
T Consensus 13 ~Il~~l~-~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 13 EILSYLD-PKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHHTS--HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHHHCc-HHHHHHHHHHhhHHHHHHcC
Confidence 4899999 69999999999999997744
No 35
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.42 E-value=0.00019 Score=37.84 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=22.9
Q ss_pred CccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 138 PQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
|+|++|+++++ .+++-. .....+++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~--~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLP--PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SSHG--GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC-CCcccC--chHhCCCCCCEEEecCCCCCC
Confidence 45777777773 555432 223467778888887777763
No 36
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=3.4e-05 Score=56.67 Aligned_cols=110 Identities=19% Similarity=0.292 Sum_probs=63.7
Q ss_pred CCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCH-HHHHHHHh
Q 037671 57 SLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITD-ESLYAIAN 135 (187)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~ 135 (187)
+++.|+. |||.++|-.+- ...+.|+.|.|+-+. |+. +..+ ..|.+|+.|-|..|.|.+ +.+..+ .
T Consensus 20 ~vkKLNc----wg~~L~DIsic-----~kMp~lEVLsLSvNk-Iss--L~pl-~rCtrLkElYLRkN~I~sldEL~YL-k 85 (388)
T KOG2123|consen 20 NVKKLNC----WGCGLDDISIC-----EKMPLLEVLSLSVNK-ISS--LAPL-QRCTRLKELYLRKNCIESLDELEYL-K 85 (388)
T ss_pred Hhhhhcc----cCCCccHHHHH-----HhcccceeEEeeccc-ccc--chhH-HHHHHHHHHHHHhcccccHHHHHHH-h
Confidence 4555554 46677765542 336778888887443 433 2222 347788888887776665 234333 3
Q ss_pred cCCccceeeccCCCCCcHHH---HHHHHhcCCCCcEEEeeCCCCCHHHHH
Q 037671 136 SCPQLKSIVLWSCRQVTGNG---LLFLVNKCGRLESINVWGTRLPLDCFI 182 (187)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~i~~~~~~ 182 (187)
.+|+|+.|.|-.++.....| -..+...+|+|+.||=. .+|.+.++
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv--~VteeEle 133 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV--PVTEEELE 133 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc--cccHHHHH
Confidence 47888888886544433332 23345667888877632 55555443
No 37
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.40 E-value=0.00023 Score=32.88 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=17.1
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHh
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLIS 110 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~ 110 (187)
|++|++|++++|..+++.++..+.+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 4667777777777777777766543
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.28 E-value=0.00016 Score=53.86 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=15.0
Q ss_pred CCCEEEecCCCCCH-HHHHHHHhcCCccceeeccC
Q 037671 114 SLQHLNIGGTFITD-ESLYAIANSCPQLKSIVLWS 147 (187)
Q Consensus 114 ~L~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~ 147 (187)
+|..|++.+|.+.. +.+..|+ .+|.|+++.+.+
T Consensus 375 SLvnLDl~~N~Ie~ldeV~~IG-~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 375 SLVNLDLSSNQIEELDEVNHIG-NLPCLETLRLTG 408 (490)
T ss_pred hheeccccccchhhHHHhcccc-cccHHHHHhhcC
Confidence 34445555544433 2222222 355666666654
No 39
>PLN03150 hypothetical protein; Provisional
Probab=97.27 E-value=0.0007 Score=56.28 Aligned_cols=85 Identities=18% Similarity=0.166 Sum_probs=44.4
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR 165 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 165 (187)
+++|+.|+++++. +... +......+++|+.|++++|.++...-..+. .+++|+.|+++++ .++...-..+.....+
T Consensus 441 L~~L~~L~Ls~N~-l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~Ls~N-~l~g~iP~~l~~~~~~ 516 (623)
T PLN03150 441 LRHLQSINLSGNS-IRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNLNGN-SLSGRVPAALGGRLLH 516 (623)
T ss_pred CCCCCEEECCCCc-ccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEECcCC-cccccCChHHhhcccc
Confidence 5677777776654 3321 222234467777777777666543222333 4667777777664 3432222223322334
Q ss_pred CcEEEeeCC
Q 037671 166 LESINVWGT 174 (187)
Q Consensus 166 L~~L~l~~~ 174 (187)
+..+++.+|
T Consensus 517 ~~~l~~~~N 525 (623)
T PLN03150 517 RASFNFTDN 525 (623)
T ss_pred CceEEecCC
Confidence 556666655
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.19 E-value=0.00012 Score=41.53 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=17.5
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTF 124 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 124 (187)
+++|+.|+++++. ++.-.- .....+++|++|++++|.
T Consensus 24 l~~L~~L~l~~N~-l~~i~~-~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 24 LPNLETLDLSNNN-LTSIPP-DAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp GTTESEEEETSSS-ESEEET-TTTTTSTTESEEEETSSS
T ss_pred CCCCCEeEccCCc-cCccCH-HHHcCCCCCCEEeCcCCc
Confidence 4556666665443 322111 122345566666665543
No 41
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.16 E-value=9e-05 Score=59.27 Aligned_cols=17 Identities=0% Similarity=-0.025 Sum_probs=8.0
Q ss_pred cEEEeeCCCCCHHHHHh
Q 037671 167 ESINVWGTRLPLDCFIG 183 (187)
Q Consensus 167 ~~L~l~~~~i~~~~~~~ 183 (187)
+.+++++|.+++.+...
T Consensus 265 ~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 265 RVLDLSRNSITEKGVRD 281 (478)
T ss_pred hhhhhhcCCccccchHH
Confidence 44444444444444433
No 42
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.14 E-value=0.00057 Score=60.67 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=50.1
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR 165 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 165 (187)
+++|+.|++++|..+.. +....++|+.|+++++.++. +..-...+++|+.|++++|+.+..-.. -...+++
T Consensus 824 L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~ 894 (1153)
T PLN03210 824 LESLESLDLSGCSRLRT-----FPDISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKH 894 (1153)
T ss_pred ccccCEEECCCCCcccc-----ccccccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCc--ccccccC
Confidence 45667777766653321 11123578888888866652 111224588899999999887765332 2345678
Q ss_pred CcEEEeeCC
Q 037671 166 LESINVWGT 174 (187)
Q Consensus 166 L~~L~l~~~ 174 (187)
|+.+++++|
T Consensus 895 L~~L~l~~C 903 (1153)
T PLN03210 895 LETVDFSDC 903 (1153)
T ss_pred CCeeecCCC
Confidence 888888887
No 43
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=9.3e-05 Score=53.60 Aligned_cols=88 Identities=20% Similarity=0.246 Sum_probs=60.1
Q ss_pred ccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCH-HHHHHHHhcCCccceeeccCCCC--CcHHHHHHHH
Q 037671 84 KCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITD-ESLYAIANSCPQLKSIVLWSCRQ--VTGNGLLFLV 160 (187)
Q Consensus 84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~l~ 160 (187)
...|+|+.|.++.+..-...++..++..+|+|++|.+++|.+.+ ..+..+. .+++|..|++..|.- +.+. =+.++
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~-~l~nL~~Ldl~n~~~~~l~dy-re~vf 139 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK-ELENLKSLDLFNCSVTNLDDY-REKVF 139 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh-hhcchhhhhcccCCccccccH-HHHHH
Confidence 33678899999866444555677777878999999999988875 2233333 366788888887732 3332 35566
Q ss_pred hcCCCCcEEEeeC
Q 037671 161 NKCGRLESINVWG 173 (187)
Q Consensus 161 ~~~~~L~~L~l~~ 173 (187)
.-+|+|+.||-.+
T Consensus 140 ~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 140 LLLPSLKYLDGCD 152 (260)
T ss_pred HHhhhhccccccc
Confidence 6778888886543
No 44
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.00 E-value=0.00031 Score=56.24 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=86.4
Q ss_pred CCCCcEEEeeeccCCcccchhhhhhhhhh-----ccCCCccEEEecCCCCCCHHHHHHHHhc---CCC-CCEEEecCCCC
Q 037671 55 AYSLKELEISRSRWGCQITDNGLYRMSFA-----KCISNLTSISLWGLTGITDKGVVQLISR---ASS-LQHLNIGGTFI 125 (187)
Q Consensus 55 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~-L~~L~l~~~~~ 125 (187)
...++.++++.| .+.+.+...++.+ ....+++.|.+.+|. ++...+..+... .+. +..+++..+.+
T Consensus 171 ~~~l~~l~l~~n----~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 171 NEHLTELDLSLN----GLIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred ccchhHHHHHhc----ccchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 455677777765 3334444443321 134568888888886 777766655553 334 55588888999
Q ss_pred CHHHHHHHHhcCCcc----ceeeccCCCCCcHHHHHHHHh---cCCCCcEEEeeCCCCCHHHHHhh
Q 037671 126 TDESLYAIANSCPQL----KSIVLWSCRQVTGNGLLFLVN---KCGRLESINVWGTRLPLDCFIGL 184 (187)
Q Consensus 126 ~~~~~~~l~~~~~~L----~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~~~~~~L 184 (187)
.|.++..+...++.+ +++++..| .+++.+...+++ .|+.++.+.++.|.+++.+...+
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~ 310 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELL 310 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHH
Confidence 999888887766554 89999885 788877666654 46789999999999998886654
No 45
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.96 E-value=0.00016 Score=60.95 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=60.7
Q ss_pred ccchhhhhhhhhhccCCCccEEEecCCC--CCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCC
Q 037671 71 QITDNGLYRMSFAKCISNLTSISLWGLT--GITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSC 148 (187)
Q Consensus 71 ~~~~~~l~~l~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 148 (187)
.++|..+..+ ..+++|+.|+++++. .++...+ .+++.|+.|+++||.++.-. ..++. |+.|++|...+
T Consensus 370 ~Ltd~c~p~l---~~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNkL~~Lp-~tva~-~~~L~tL~ahs- 439 (1081)
T KOG0618|consen 370 HLTDSCFPVL---VNFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNKLTTLP-DTVAN-LGRLHTLRAHS- 439 (1081)
T ss_pred cccccchhhh---ccccceeeeeecccccccCCHHHH----hchHHhHHHhcccchhhhhh-HHHHh-hhhhHHHhhcC-
Confidence 5566655544 446777777777663 2333322 34677777777776655322 23332 66777777765
Q ss_pred CCCcHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHh
Q 037671 149 RQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIG 183 (187)
Q Consensus 149 ~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 183 (187)
+.+.... .++ ..|.|+.+|++.|.++.-.+.+
T Consensus 440 N~l~~fP--e~~-~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 440 NQLLSFP--ELA-QLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred Cceeech--hhh-hcCcceEEecccchhhhhhhhh
Confidence 3443322 343 4789999999999888766544
No 46
>PLN03150 hypothetical protein; Provisional
Probab=96.92 E-value=0.0015 Score=54.35 Aligned_cols=84 Identities=20% Similarity=0.179 Sum_probs=57.6
Q ss_pred ccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcE
Q 037671 89 LTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLES 168 (187)
Q Consensus 89 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 168 (187)
++.|+++++. +....-.. ...+++|+.|+|++|.+....-..+ ..++.|+.|+++++ .++...-..+ ..+++|+.
T Consensus 420 v~~L~L~~n~-L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N-~lsg~iP~~l-~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQG-LRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYN-SFNGSIPESL-GQLTSLRI 494 (623)
T ss_pred EEEEECCCCC-ccccCCHH-HhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCC-CCCCCCchHH-hcCCCCCE
Confidence 6777787664 43322222 3458999999999987764322233 45899999999985 6654333333 46899999
Q ss_pred EEeeCCCCC
Q 037671 169 INVWGTRLP 177 (187)
Q Consensus 169 L~l~~~~i~ 177 (187)
|++++|.++
T Consensus 495 L~Ls~N~l~ 503 (623)
T PLN03150 495 LNLNGNSLS 503 (623)
T ss_pred EECcCCccc
Confidence 999999765
No 47
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.90 E-value=0.00084 Score=30.28 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=7.9
Q ss_pred CccceeeccCCCCCcHHHHHHH
Q 037671 138 PQLKSIVLWSCRQVTGNGLLFL 159 (187)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~l 159 (187)
++|++|++++| .++++++..+
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHh
Confidence 33444444443 3444444433
No 48
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.88 E-value=0.0013 Score=30.97 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=19.1
Q ss_pred CCCcEEEeeCCCCCHHHHHhhhc
Q 037671 164 GRLESINVWGTRLPLDCFIGLLT 186 (187)
Q Consensus 164 ~~L~~L~l~~~~i~~~~~~~L~~ 186 (187)
++|++|+|++|.++++|...|..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 57899999999999999887753
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.86 E-value=5.1e-05 Score=62.52 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=5.7
Q ss_pred CCCCcEEEeeec
Q 037671 55 AYSLKELEISRS 66 (187)
Q Consensus 55 ~~~L~~L~l~~~ 66 (187)
.+.+++|+|++|
T Consensus 186 l~ale~LnLshN 197 (1096)
T KOG1859|consen 186 LPALESLNLSHN 197 (1096)
T ss_pred HHHhhhhccchh
Confidence 344455555544
No 50
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.82 E-value=0.0011 Score=58.97 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=39.7
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGT-FITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCG 164 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 164 (187)
+++|+.|++++|..+.. +......+++|+.|+++++ .++. +.. ...++.|+.|++++|..+. .+....+
T Consensus 656 l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~--Lp~-~i~l~sL~~L~Lsgc~~L~-----~~p~~~~ 725 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEI--LPT-GINLKSLYRLNLSGCSRLK-----SFPDIST 725 (1153)
T ss_pred CCcccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCc--cCC-cCCCCCCCEEeCCCCCCcc-----ccccccC
Confidence 46666777766643221 2222344566777777663 2221 000 0135667777776664332 1222234
Q ss_pred CCcEEEeeCCCC
Q 037671 165 RLESINVWGTRL 176 (187)
Q Consensus 165 ~L~~L~l~~~~i 176 (187)
+|+.|++++|.+
T Consensus 726 nL~~L~L~~n~i 737 (1153)
T PLN03210 726 NISWLDLDETAI 737 (1153)
T ss_pred CcCeeecCCCcc
Confidence 566666666643
No 51
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.81 E-value=0.00034 Score=57.20 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=9.6
Q ss_pred CCCCcEEEeeCCCCCH
Q 037671 163 CGRLESINVWGTRLPL 178 (187)
Q Consensus 163 ~~~L~~L~l~~~~i~~ 178 (187)
.++|+.|+|++|+|++
T Consensus 244 l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITE 259 (1255)
T ss_pred hhhhheeccCcCceee
Confidence 3556666666666553
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.70 E-value=0.0021 Score=33.81 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=12.2
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccC
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWS 147 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 147 (187)
+|++|+++++.+++ +......+++|+.|++++
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETS
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecC
Confidence 34444444444442 222122344444444444
No 53
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.68 E-value=0.00024 Score=58.04 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=44.9
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC--CHHHHHhh
Q 037671 111 RASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL--PLDCFIGL 184 (187)
Q Consensus 111 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i--~~~~~~~L 184 (187)
...+|++|+|++|.+....++.+. ++..|+.|.+++. .-+-..+..-...+.+|+.+|++.|.+ -++++-.+
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~T-qRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l 244 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNT-QRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKL 244 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccc-cchhhcCCCchhhhhhhhhccccccCCCcchHHHhhh
Confidence 345788889999888776665443 2455667777652 333333322234556899999998844 46665444
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.00053 Score=50.61 Aligned_cols=109 Identities=21% Similarity=0.178 Sum_probs=73.5
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.|+.++|.+ +.+.++.|+.|.|+-| .++ .+..+ ..|.+|++|.|-.+. |++..-....+..|
T Consensus 22 kKLNcwg~~L~DIs---ic~kMp~lEVLsLSvN----kIs--sL~pl---~rCtrLkElYLRkN~-I~sldEL~YLknlp 88 (388)
T KOG2123|consen 22 KKLNCWGCGLDDIS---ICEKMPLLEVLSLSVN----KIS--SLAPL---QRCTRLKELYLRKNC-IESLDELEYLKNLP 88 (388)
T ss_pred hhhcccCCCccHHH---HHHhcccceeEEeecc----ccc--cchhH---HHHHHHHHHHHHhcc-cccHHHHHHHhcCc
Confidence 56788888877644 4567889999988865 332 22232 458889999987554 77766666777889
Q ss_pred CCCEEEecCCCCCH----HHHHHHHhcCCccceeeccCCCCCcHHHHHH
Q 037671 114 SLQHLNIGGTFITD----ESLYAIANSCPQLKSIVLWSCRQVTGNGLLF 158 (187)
Q Consensus 114 ~L~~L~l~~~~~~~----~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 158 (187)
+|++|=|..|.-.. ..-..+...+|+|++|+= ..++.+.++.
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn---v~VteeEle~ 134 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN---VPVTEEELEE 134 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhccC---ccccHHHHHH
Confidence 99999887743222 222345566899998875 3566666554
No 55
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.40 E-value=0.0061 Score=28.58 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=13.3
Q ss_pred CCCCEEEecCCCCCHHHHHHHHh
Q 037671 113 SSLQHLNIGGTFITDESLYAIAN 135 (187)
Q Consensus 113 ~~L~~L~l~~~~~~~~~~~~l~~ 135 (187)
++|+.|+|++|.+++++...++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 35566666666666666555554
No 56
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.25 E-value=0.0043 Score=52.67 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=47.2
Q ss_pred CccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCc
Q 037671 88 NLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLE 167 (187)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 167 (187)
+|+.|+++++. ++. +. ...++|+.|++++|.++. +....+.|+.|++++ +.++.-. ..+ ..+++|+
T Consensus 383 ~L~~LdLs~N~-Lt~--LP---~l~s~L~~LdLS~N~Lss-----IP~l~~~L~~L~Ls~-NqLt~LP-~sl-~~L~~L~ 448 (788)
T PRK15387 383 GLKELIVSGNR-LTS--LP---VLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYR-NQLTRLP-ESL-IHLSSET 448 (788)
T ss_pred ccceEEecCCc-ccC--CC---CcccCCCEEEccCCcCCC-----CCcchhhhhhhhhcc-CcccccC-hHH-hhccCCC
Confidence 56666665543 332 11 112467777777765542 111223567777766 3554221 112 3578999
Q ss_pred EEEeeCCCCCHHHHHhh
Q 037671 168 SINVWGTRLPLDCFIGL 184 (187)
Q Consensus 168 ~L~l~~~~i~~~~~~~L 184 (187)
.|++++|++++.....|
T Consensus 449 ~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 449 TVNLEGNPLSERTLQAL 465 (788)
T ss_pred eEECCCCCCCchHHHHH
Confidence 99999999987765544
No 57
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.15 E-value=0.0089 Score=50.80 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=8.0
Q ss_pred CCcEEEeeCCCCC
Q 037671 165 RLESINVWGTRLP 177 (187)
Q Consensus 165 ~L~~L~l~~~~i~ 177 (187)
+|+.|++++|.++
T Consensus 343 ~Lq~LdLS~N~Ls 355 (788)
T PRK15387 343 GLQELSVSDNQLA 355 (788)
T ss_pred ccceEecCCCccC
Confidence 5666666666554
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.10 E-value=0.0014 Score=47.68 Aligned_cols=65 Identities=18% Similarity=0.360 Sum_probs=48.6
Q ss_pred cCCCCCEEEecCCCCC-HHHHHHHHhcCCccceeeccCCCCCcH-HHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 111 RASSLQHLNIGGTFIT-DESLYAIANSCPQLKSIVLWSCRQVTG-NGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 111 ~~~~L~~L~l~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
.+|+|+.|.++.|... ..++..++..+|+|+++++++ +.+.+ +.+.-+ ...++|..|++..|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl-~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPL-KELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchh-hhhcchhhhhcccCCcc
Confidence 3689999999997443 345777888899999999998 47664 222222 35788999999999765
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.00 E-value=0.0036 Score=52.18 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=9.3
Q ss_pred cCCCccEEEecCCC
Q 037671 85 CISNLTSISLWGLT 98 (187)
Q Consensus 85 ~~~~L~~L~l~~~~ 98 (187)
.++.|++|.+-+|+
T Consensus 107 pF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCD 120 (1096)
T ss_pred cccceeeEEecCcc
Confidence 35667777777665
No 60
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.95 E-value=0.0073 Score=46.81 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=49.0
Q ss_pred HHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 107 QLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 107 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
..++..++|+.|++++|.++.-.-. .+.....+++|.+.. +.+.... ..++++...|+.|+|.||+||
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~-aFe~~a~l~eL~L~~-N~l~~v~-~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDG-AFEGAAELQELYLTR-NKLEFVS-SGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhh-hhcchhhhhhhhcCc-chHHHHH-HHhhhccccceeeeecCCeeE
Confidence 3456789999999999877753222 234466799999987 4553322 455678899999999999885
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.65 E-value=0.011 Score=41.81 Aligned_cols=86 Identities=20% Similarity=0.278 Sum_probs=54.2
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCH-HHHHHHHhcCCccceeeccCCCCCcHHHHH--HHHh
Q 037671 85 CISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITD-ESLYAIANSCPQLKSIVLWSCRQVTGNGLL--FLVN 161 (187)
Q Consensus 85 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~--~l~~ 161 (187)
..++|..|.+..+. |+..+- -+....|+|++|.+.+|.+.. ..+..++. ||.|+.|.+-+ +.++...=. .+.-
T Consensus 62 ~l~rL~tLll~nNr-It~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~-~p~L~~Ltll~-Npv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNR-ITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLAS-CPKLEYLTLLG-NPVEHKKNYRLYVLY 137 (233)
T ss_pred CccccceEEecCCc-ceeecc-chhhhccccceEEecCcchhhhhhcchhcc-CCccceeeecC-CchhcccCceeEEEE
Confidence 35677788886554 555322 233447888888888876654 23555554 88888888877 355444311 2233
Q ss_pred cCCCCcEEEeeCC
Q 037671 162 KCGRLESINVWGT 174 (187)
Q Consensus 162 ~~~~L~~L~l~~~ 174 (187)
..|+|+.||.++.
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 5688888888754
No 62
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.49 E-value=0.034 Score=47.33 Aligned_cols=88 Identities=10% Similarity=0.076 Sum_probs=50.0
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcH--HHHHHHHhcCC
Q 037671 87 SNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTG--NGLLFLVNKCG 164 (187)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~ 164 (187)
++|+.|+++++. ++. +.... .++|+.|++++|.++.- -..+. +.|+.|+++++ .++. ..+..+....|
T Consensus 346 ~sL~~L~Ls~N~-L~~--LP~~l--p~~L~~LdLs~N~Lt~L-P~~l~---~sL~~LdLs~N-~L~~LP~sl~~~~~~~~ 415 (754)
T PRK15370 346 PELQVLDVSKNQ-ITV--LPETL--PPTITTLDVSRNALTNL-PENLP---AALQIMQASRN-NLVRLPESLPHFRGEGP 415 (754)
T ss_pred CcccEEECCCCC-CCc--CChhh--cCCcCEEECCCCcCCCC-CHhHH---HHHHHHhhccC-CcccCchhHHHHhhcCC
Confidence 566677776554 331 11101 25677777777655420 00111 24666777664 4332 12444445568
Q ss_pred CCcEEEeeCCCCCHHHHHhh
Q 037671 165 RLESINVWGTRLPLDCFIGL 184 (187)
Q Consensus 165 ~L~~L~l~~~~i~~~~~~~L 184 (187)
++..|++.+|+++...+..+
T Consensus 416 ~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 416 QPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred CccEEEeeCCCccHHHHHHH
Confidence 89999999999998877665
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.19 E-value=0.0085 Score=39.83 Aligned_cols=81 Identities=19% Similarity=0.155 Sum_probs=46.8
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCC
Q 037671 87 SNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRL 166 (187)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 166 (187)
.+|+..+++++. +.. .-..+...++.+++|+++++.+.+--.. ++ .+|.|+.|++..+ .+.-+. .-++. +.++
T Consensus 53 ~el~~i~ls~N~-fk~-fp~kft~kf~t~t~lNl~~neisdvPeE-~A-am~aLr~lNl~~N-~l~~~p-~vi~~-L~~l 125 (177)
T KOG4579|consen 53 YELTKISLSDNG-FKK-FPKKFTIKFPTATTLNLANNEISDVPEE-LA-AMPALRSLNLRFN-PLNAEP-RVIAP-LIKL 125 (177)
T ss_pred ceEEEEecccch-hhh-CCHHHhhccchhhhhhcchhhhhhchHH-Hh-hhHHhhhcccccC-ccccch-HHHHH-HHhH
Confidence 456666676542 111 1123445577888888888776653232 33 3777888888763 443332 33443 6667
Q ss_pred cEEEeeCC
Q 037671 167 ESINVWGT 174 (187)
Q Consensus 167 ~~L~l~~~ 174 (187)
-.||..++
T Consensus 126 ~~Lds~~n 133 (177)
T KOG4579|consen 126 DMLDSPEN 133 (177)
T ss_pred HHhcCCCC
Confidence 77777766
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.72 E-value=0.021 Score=40.37 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=60.9
Q ss_pred HHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHH
Q 037671 51 LVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESL 130 (187)
Q Consensus 51 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 130 (187)
.+.+.++|..|.+.+| .++.-.-.. ....|+|..|.+.++.-..-..+..+. .||.|++|.+-+|++++..=
T Consensus 59 ~lp~l~rL~tLll~nN----rIt~I~p~L---~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~ 130 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNN----RITRIDPDL---DTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNPVEHKKN 130 (233)
T ss_pred cCCCccccceEEecCC----cceeeccch---hhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCchhcccC
Confidence 3456788999999887 455432211 233689999999877633333444444 49999999999988887532
Q ss_pred H--HHHhcCCccceeeccCC
Q 037671 131 Y--AIANSCPQLKSIVLWSC 148 (187)
Q Consensus 131 ~--~l~~~~~~L~~L~l~~~ 148 (187)
. .+...+|.|+.||+.+.
T Consensus 131 YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 131 YRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ceeEEEEecCcceEeehhhh
Confidence 2 23345799999999764
No 65
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.45 E-value=0.027 Score=22.99 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=7.6
Q ss_pred CCCcEEEeeCCCCC
Q 037671 164 GRLESINVWGTRLP 177 (187)
Q Consensus 164 ~~L~~L~l~~~~i~ 177 (187)
++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 46777777777654
No 66
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=94.41 E-value=0.073 Score=43.05 Aligned_cols=87 Identities=16% Similarity=0.098 Sum_probs=61.2
Q ss_pred hccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCC--CCCH-HHHHHHHhcCCccceeeccCCCCCcH-----H
Q 037671 83 AKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGT--FITD-ESLYAIANSCPQLKSIVLWSCRQVTG-----N 154 (187)
Q Consensus 83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~-----~ 154 (187)
....|.+..++++.+....-.++..+....|+|++|+|++| .+.+ ..+..+. .+.||+|-+.+++-++. +
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k--~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK--GLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc--CCCHHHeeecCCccccchhhhHH
Confidence 35678888999987765666778888888999999999997 4433 2343333 35589999988554332 3
Q ss_pred HHHHHHhcCCCCcEEEe
Q 037671 155 GLLFLVNKCGRLESINV 171 (187)
Q Consensus 155 ~~~~l~~~~~~L~~L~l 171 (187)
.+.++-+..|+|..||=
T Consensus 292 yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 292 YVSAIRELFPKLLRLDG 308 (585)
T ss_pred HHHHHHHhcchheeecC
Confidence 45666677888887763
No 67
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.21 E-value=0.0006 Score=46.90 Aligned_cols=15 Identities=20% Similarity=0.291 Sum_probs=11.0
Q ss_pred cCCCCcEEEeeCCCC
Q 037671 162 KCGRLESINVWGTRL 176 (187)
Q Consensus 162 ~~~~L~~L~l~~~~i 176 (187)
.+.+|+.|.+++|.+
T Consensus 148 ~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 148 KLTNLQILSLRDNDL 162 (264)
T ss_pred hhcceeEEeeccCch
Confidence 356788888888843
No 68
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.98 E-value=0.027 Score=44.03 Aligned_cols=112 Identities=11% Similarity=0.075 Sum_probs=54.9
Q ss_pred HHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHH
Q 037671 51 LVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESL 130 (187)
Q Consensus 51 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 130 (187)
.....++|..|++++|. =+.++.++-.. ..|+.++++.+. +.. ...+.-....++++--+.+++..-..
T Consensus 430 ~l~~l~kLt~L~L~NN~-Ln~LP~e~~~l-------v~Lq~LnlS~Nr-Fr~--lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNL-LNDLPEEMGSL-------VRLQTLNLSFNR-FRM--LPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred HHHhhhcceeeecccch-hhhcchhhhhh-------hhhheecccccc-ccc--chHHHhhHHHHHHHHhccccccccCh
Confidence 33445667777777663 12334333222 337777776542 211 11111111223333333333321111
Q ss_pred HHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 131 YAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 131 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
.-+ ..+.+|.+|++.. +.+ ..+-.+...|.+|++|++.||++.
T Consensus 499 ~~l-~nm~nL~tLDL~n-Ndl--q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 499 SGL-KNMRNLTTLDLQN-NDL--QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHh-hhhhhcceeccCC-Cch--hhCChhhccccceeEEEecCCccC
Confidence 111 2356788888866 343 223344557888999999998664
No 69
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=93.85 E-value=0.037 Score=42.13 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=25.4
Q ss_pred ccccccchhHHHHHHHhhHHHHHHh-hhhhcc
Q 037671 2 LFVFVIPFVCLLRVSSVCKKWKLGV-KQSLAR 32 (187)
Q Consensus 2 I~~~l~~~~~~~~~~~vck~w~~~~-~~~l~~ 32 (187)
||+||+. .+++.|-+|||.|+++. .+.+|+
T Consensus 90 ilsyld~-~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 90 ILSYLDA-LSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHHhcch-hhhhHHHHHHHHHHHHhccchHHH
Confidence 8999996 99999999999999976 445554
No 70
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=93.80 E-value=0.00063 Score=46.81 Aligned_cols=107 Identities=18% Similarity=0.233 Sum_probs=53.9
Q ss_pred CCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCC-CCCHHHHHHHHhcCCCCCEEEecCCCCCHH-----
Q 037671 55 AYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLT-GITDKGVVQLISRASSLQHLNIGGTFITDE----- 128 (187)
Q Consensus 55 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----- 128 (187)
..+|+.|++++| ++++--. .+ ...++|+.|+++.+. .+..+|+ .++|.|+.|++.++++...
T Consensus 55 l~nlevln~~nn----qie~lp~-~i---ssl~klr~lnvgmnrl~~lprgf----gs~p~levldltynnl~e~~lpgn 122 (264)
T KOG0617|consen 55 LKNLEVLNLSNN----QIEELPT-SI---SSLPKLRILNVGMNRLNILPRGF----GSFPALEVLDLTYNNLNENSLPGN 122 (264)
T ss_pred hhhhhhhhcccc----hhhhcCh-hh---hhchhhhheecchhhhhcCcccc----CCCchhhhhhccccccccccCCcc
Confidence 456777777765 2322111 11 235777777775332 1222333 3467777777776544322
Q ss_pred -----HHHHH-------------HhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC
Q 037671 129 -----SLYAI-------------ANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL 176 (187)
Q Consensus 129 -----~~~~l-------------~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i 176 (187)
.+.++ ...+.+|+-|.+..+..++-. +.+. .+..|++|.+.||.+
T Consensus 123 ff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lp--keig-~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 123 FFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLP--KEIG-DLTRLRELHIQGNRL 185 (264)
T ss_pred hhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCc--HHHH-HHHHHHHHhccccee
Confidence 11111 122445666776654332211 1222 245688888888855
No 71
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=93.15 E-value=0.33 Score=41.55 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=34.5
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCC
Q 037671 87 SNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRL 166 (187)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 166 (187)
++|+.|+++++. ++. +..-. .++|+.|++++|.+..- -..+ ..+|+.|++++ +.++.- .. .-.++|
T Consensus 220 ~nL~~L~Ls~N~-Lts--LP~~l--~~~L~~L~Ls~N~L~~L-P~~l---~s~L~~L~Ls~-N~L~~L--P~--~l~~sL 285 (754)
T PRK15370 220 GNIKTLYANSNQ-LTS--IPATL--PDTIQEMELSINRITEL-PERL---PSALQSLDLFH-NKISCL--PE--NLPEEL 285 (754)
T ss_pred cCCCEEECCCCc-ccc--CChhh--hccccEEECcCCccCcC-ChhH---hCCCCEEECcC-CccCcc--cc--ccCCCC
Confidence 467777776553 332 11101 23566666666554420 0011 13466666654 243311 00 112356
Q ss_pred cEEEeeCCCCC
Q 037671 167 ESINVWGTRLP 177 (187)
Q Consensus 167 ~~L~l~~~~i~ 177 (187)
+.|++++|.++
T Consensus 286 ~~L~Ls~N~Lt 296 (754)
T PRK15370 286 RYLSVYDNSIR 296 (754)
T ss_pred cEEECCCCccc
Confidence 66666666543
No 72
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.86 E-value=0.21 Score=43.49 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=7.4
Q ss_pred cCCccceeeccC
Q 037671 136 SCPQLKSIVLWS 147 (187)
Q Consensus 136 ~~~~L~~L~l~~ 147 (187)
.+++|++|.+..
T Consensus 640 ~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 640 ELQSLRVLRLPR 651 (889)
T ss_pred hcccccEEEeec
Confidence 356667776655
No 73
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=92.51 E-value=0.043 Score=42.76 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=53.0
Q ss_pred CcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCHHHHHHHHhc
Q 037671 58 LKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESLYAIANS 136 (187)
Q Consensus 58 L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~ 136 (187)
...+.|..|. -..+++..++. .++|++|+|+.+. |+..+-.++.. .++|.+|.+.+ +.|++---.. +.+
T Consensus 69 tveirLdqN~-I~~iP~~aF~~------l~~LRrLdLS~N~-Is~I~p~AF~G-L~~l~~Lvlyg~NkI~~l~k~~-F~g 138 (498)
T KOG4237|consen 69 TVEIRLDQNQ-ISSIPPGAFKT------LHRLRRLDLSKNN-ISFIAPDAFKG-LASLLSLVLYGNNKITDLPKGA-FGG 138 (498)
T ss_pred ceEEEeccCC-cccCChhhccc------hhhhceecccccc-hhhcChHhhhh-hHhhhHHHhhcCCchhhhhhhH-hhh
Confidence 5556665542 11344444433 4677777777664 65555444433 56666665555 6666532222 233
Q ss_pred CCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC
Q 037671 137 CPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT 174 (187)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 174 (187)
+..++.|.++-+ +++-.- ......+++|..|.+.+|
T Consensus 139 L~slqrLllNan-~i~Cir-~~al~dL~~l~lLslyDn 174 (498)
T KOG4237|consen 139 LSSLQRLLLNAN-HINCIR-QDALRDLPSLSLLSLYDN 174 (498)
T ss_pred HHHHHHHhcChh-hhcchh-HHHHHHhhhcchhcccch
Confidence 445666666442 332222 222334666777777666
No 74
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.21 E-value=0.042 Score=43.53 Aligned_cols=83 Identities=25% Similarity=0.237 Sum_probs=47.1
Q ss_pred cCCCccEEEecCCCCCCHH-HHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcC
Q 037671 85 CISNLTSISLWGLTGITDK-GVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKC 163 (187)
Q Consensus 85 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 163 (187)
.+++|+.|+++++. |+.. ++ ..++.|+.|++.+|.+.+-.- ...++.|+.++++++ .+.+..-.- ...+
T Consensus 116 ~~~~L~~L~ls~N~-I~~i~~l----~~l~~L~~L~l~~N~i~~~~~---~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~ 185 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNK-ITKLEGL----STLTLLKELNLSGNLISDISG---LESLKSLKLLDLSYN-RIVDIENDE-LSEL 185 (414)
T ss_pred hhhcchheeccccc-cccccch----hhccchhhheeccCcchhccC---CccchhhhcccCCcc-hhhhhhhhh-hhhc
Confidence 36777777777664 4332 22 123447777777777664211 122666777777764 333222101 3456
Q ss_pred CCCcEEEeeCCCCC
Q 037671 164 GRLESINVWGTRLP 177 (187)
Q Consensus 164 ~~L~~L~l~~~~i~ 177 (187)
.+++.+++.+|.+.
T Consensus 186 ~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 186 ISLEELDLGGNSIR 199 (414)
T ss_pred cchHHHhccCCchh
Confidence 77888888877553
No 75
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.30 E-value=0.093 Score=41.62 Aligned_cols=35 Identities=20% Similarity=0.093 Sum_probs=15.9
Q ss_pred CCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccC
Q 037671 112 ASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWS 147 (187)
Q Consensus 112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 147 (187)
.+.|+.++++++.+.+-.-.. ...+..++.+.+.+
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGG 195 (414)
T ss_pred chhhhcccCCcchhhhhhhhh-hhhccchHHHhccC
Confidence 455555555554444322111 23344555555554
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.98 E-value=0.15 Score=34.15 Aligned_cols=101 Identities=15% Similarity=0.137 Sum_probs=60.1
Q ss_pred eeeecccccC-HHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 35 NLSFAGWKMD-DDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 35 ~l~~~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
.+.+.+|.+. .............|...++++|. +.+.-- .+ ...++-++.|+++.+. +++-... ..+++
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~----fk~fp~-kf--t~kf~t~t~lNl~~ne-isdvPeE--~Aam~ 100 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG----FKKFPK-KF--TIKFPTATTLNLANNE-ISDVPEE--LAAMP 100 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccch----hhhCCH-HH--hhccchhhhhhcchhh-hhhchHH--HhhhH
Confidence 3466677554 22333334445668888888762 222211 11 2345678889987654 5544333 34589
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccC
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWS 147 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 147 (187)
.|+.|++..|.+..+ .+.++. +.++..|+..+
T Consensus 101 aLr~lNl~~N~l~~~-p~vi~~-L~~l~~Lds~~ 132 (177)
T KOG4579|consen 101 ALRSLNLRFNPLNAE-PRVIAP-LIKLDMLDSPE 132 (177)
T ss_pred HhhhcccccCccccc-hHHHHH-HHhHHHhcCCC
Confidence 999999999877643 344454 55667777765
No 77
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.58 E-value=0.11 Score=22.57 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=10.5
Q ss_pred CCcEEEeeCCCCC
Q 037671 165 RLESINVWGTRLP 177 (187)
Q Consensus 165 ~L~~L~l~~~~i~ 177 (187)
+|++|++++|.++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 5788999998765
No 78
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=89.71 E-value=0.4 Score=39.00 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=48.5
Q ss_pred cCCCCCEEEecCCCCC-HHHHHHHHhcCCccceeeccCCC-CCc-HHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 111 RASSLQHLNIGGTFIT-DESLYAIANSCPQLKSIVLWSCR-QVT-GNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 111 ~~~~L~~L~l~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~-~~~-~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
..|.+..+.|++|.+. -+++..++...|+|..|+|+++. .+. +..+.++ +.+.|++|.+.||++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCcccc
Confidence 5788999999997655 46788899999999999999851 222 2223322 24569999999998854
No 79
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=88.27 E-value=0.72 Score=40.36 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=45.2
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC--HHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFIT--DESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKC 163 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 163 (187)
.|.|+.|++++|... ..++..+...-+|+.|++++..+. +.++ ..++.|.+|++...... ..+..+...+
T Consensus 570 m~~LrVLDLs~~~~l--~~LP~~I~~Li~LryL~L~~t~I~~LP~~l----~~Lk~L~~Lnl~~~~~l--~~~~~i~~~L 641 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSL--SKLPSSIGELVHLRYLDLSDTGISHLPSGL----GNLKKLIYLNLEVTGRL--ESIPGILLEL 641 (889)
T ss_pred CcceEEEECCCCCcc--CcCChHHhhhhhhhcccccCCCccccchHH----HHHHhhheecccccccc--ccccchhhhc
Confidence 577777777765321 122233344566777777776655 2222 22456777777653221 1223344457
Q ss_pred CCCcEEEeeCCC
Q 037671 164 GRLESINVWGTR 175 (187)
Q Consensus 164 ~~L~~L~l~~~~ 175 (187)
++|+.|.+....
T Consensus 642 ~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 642 QSLRVLRLPRSA 653 (889)
T ss_pred ccccEEEeeccc
Confidence 788888886653
No 80
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=85.60 E-value=0.71 Score=21.06 Aligned_cols=8 Identities=25% Similarity=0.571 Sum_probs=3.7
Q ss_pred CCEEEecC
Q 037671 115 LQHLNIGG 122 (187)
Q Consensus 115 L~~L~l~~ 122 (187)
||+|+|..
T Consensus 2 LKtL~L~~ 9 (26)
T PF07723_consen 2 LKTLHLDS 9 (26)
T ss_pred CeEEEeeE
Confidence 44444444
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=84.86 E-value=0.51 Score=38.83 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=23.8
Q ss_pred CccccccchhHHHHHHHhhHHHHHHhh
Q 037671 1 FLFVFVIPFVCLLRVSSVCKKWKLGVK 27 (187)
Q Consensus 1 ~I~~~l~~~~~~~~~~~vck~w~~~~~ 27 (187)
|||.||++ ++++.+++||+.|+....
T Consensus 118 ~il~~Ld~-~~l~~~~~v~~~w~~~~~ 143 (537)
T KOG0274|consen 118 HILSFLDG-RDLLAVRQVCRNWNKLLD 143 (537)
T ss_pred cccccCCH-HHhhhhhhhcchhhhhhh
Confidence 68999996 999999999999999773
No 82
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=84.85 E-value=5 Score=30.88 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=42.9
Q ss_pred HHHHHHhcCCCCCEEEecC-CCCCHHHHHHHHhcCCc---cceeeccCCCCCcHH---HHHHHHhcCCCCcEEEeeCCCC
Q 037671 104 GVVQLISRASSLQHLNIGG-TFITDESLYAIANSCPQ---LKSIVLWSCRQVTGN---GLLFLVNKCGRLESINVWGTRL 176 (187)
Q Consensus 104 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~---L~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~i 176 (187)
.+..+-..-+.++.++++. ..++.+.+..++..+.+ .+...+.+ ...++. ++..+...++.|++|.+.+|-|
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~slnvesnFI 267 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSLNVESNFI 267 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhheecccccc
Confidence 3333444456677777776 45665555555444332 44444433 122222 2333344566777777777777
Q ss_pred CHHHHHhhh
Q 037671 177 PLDCFIGLL 185 (187)
Q Consensus 177 ~~~~~~~L~ 185 (187)
|..|+.+++
T Consensus 268 tg~gi~a~~ 276 (353)
T KOG3735|consen 268 TGLGIMALL 276 (353)
T ss_pred ccHHHHHHH
Confidence 777766654
No 83
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=84.30 E-value=0.69 Score=36.14 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.1
Q ss_pred ccccccchhHHHHHHHhhHHHHHHhh
Q 037671 2 LFVFVIPFVCLLRVSSVCKKWKLGVK 27 (187)
Q Consensus 2 I~~~l~~~~~~~~~~~vck~w~~~~~ 27 (187)
|..+|+...|+++++.||+.||.++.
T Consensus 15 i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 15 IAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred HHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 56778667899999999999999764
No 84
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=83.45 E-value=3.4 Score=31.72 Aligned_cols=100 Identities=21% Similarity=0.249 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh-ccCCCccEEEecCCC--CCCHHHHHHHHhcCCCCCEEEec
Q 037671 45 DDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLT--GITDKGVVQLISRASSLQHLNIG 121 (187)
Q Consensus 45 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~-~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~l~ 121 (187)
+..+.++...-+.+..+++.+.. .++...+..++.+ ....+.+.+.+.+.. ..-..++..+++.++.|++|++.
T Consensus 187 e~~leri~~nd~~l~evnlnn~~---~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnve 263 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIR---RIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVE 263 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccc---cCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecc
Confidence 33455666666788888888653 6777766665433 334556666664322 22234566778889999999999
Q ss_pred CCCCCHHHHHHHHhcCCc---cceeeccC
Q 037671 122 GTFITDESLYAIANSCPQ---LKSIVLWS 147 (187)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~---L~~L~l~~ 147 (187)
++.|+..++.++...++. |..+.+.+
T Consensus 264 snFItg~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 264 SNFITGLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred ccccccHHHHHHHHHHhccchhhHhhhhh
Confidence 999999988877655433 55555543
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.34 E-value=1 Score=20.22 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=10.9
Q ss_pred CCCcEEEeeCCCCC
Q 037671 164 GRLESINVWGTRLP 177 (187)
Q Consensus 164 ~~L~~L~l~~~~i~ 177 (187)
++|+.|++++|.++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 57888999888554
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.34 E-value=1 Score=20.22 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=10.9
Q ss_pred CCCcEEEeeCCCCC
Q 037671 164 GRLESINVWGTRLP 177 (187)
Q Consensus 164 ~~L~~L~l~~~~i~ 177 (187)
++|+.|++++|.++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 57888999888554
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.93 E-value=1.1 Score=20.42 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=11.7
Q ss_pred CCCcEEEeeCCCCC
Q 037671 164 GRLESINVWGTRLP 177 (187)
Q Consensus 164 ~~L~~L~l~~~~i~ 177 (187)
.+|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 57899999999884
No 88
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=82.15 E-value=0.73 Score=36.14 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=10.7
Q ss_pred cCCCCcEEEeeCCCCCH
Q 037671 162 KCGRLESINVWGTRLPL 178 (187)
Q Consensus 162 ~~~~L~~L~l~~~~i~~ 178 (187)
.+++++.|++++|.+++
T Consensus 253 ~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 253 NLSNLETLDLSNNQISS 269 (394)
T ss_pred cccccceeccccccccc
Confidence 34557777777776654
No 89
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=80.76 E-value=1.1 Score=35.07 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=28.6
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL 176 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i 176 (187)
+|+.|+++++.+..-- .-...+|.|+.|+++.+ .+++..-. ....+.|+.|++++|.+
T Consensus 141 nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N-~l~~l~~~--~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 141 NLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFN-DLSDLPKL--LSNLSNLNNLDLSGNKI 198 (394)
T ss_pred hcccccccccchhhhh--hhhhccccccccccCCc-hhhhhhhh--hhhhhhhhheeccCCcc
Confidence 5666666665554321 11233566666666653 44333311 11345566666666644
No 90
>PRK15386 type III secretion protein GogB; Provisional
Probab=80.74 E-value=3.1 Score=33.13 Aligned_cols=13 Identities=23% Similarity=0.038 Sum_probs=7.9
Q ss_pred cCCCCcEEEeeec
Q 037671 54 YAYSLKELEISRS 66 (187)
Q Consensus 54 ~~~~L~~L~l~~~ 66 (187)
.++++++|++++|
T Consensus 50 ~~~~l~~L~Is~c 62 (426)
T PRK15386 50 EARASGRLYIKDC 62 (426)
T ss_pred HhcCCCEEEeCCC
Confidence 3566677776643
No 91
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=76.41 E-value=1.4 Score=34.94 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=27.5
Q ss_pred hcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCC
Q 037671 110 SRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSC 148 (187)
Q Consensus 110 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 148 (187)
+.+.+|.+|++.+|++.. +-.+...|.+|++|.++++
T Consensus 502 ~nm~nL~tLDL~nNdlq~--IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQQ--IPPILGNMTNLRHLELDGN 538 (565)
T ss_pred hhhhhcceeccCCCchhh--CChhhccccceeEEEecCC
Confidence 457889999998876642 3345566888999999884
No 92
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=68.98 E-value=3.9 Score=31.20 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=21.9
Q ss_pred cccchhHHHHHHHhhHHHHHHh-hhhhccc
Q 037671 5 FVIPFVCLLRVSSVCKKWKLGV-KQSLARR 33 (187)
Q Consensus 5 ~l~~~~~~~~~~~vck~w~~~~-~~~l~~~ 33 (187)
-++ ++++..++.|||.|+..+ .+.+|+.
T Consensus 126 ~~d-~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 126 LLD-LRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hcc-hhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 455 589999999999999977 5566653
No 93
>PRK15386 type III secretion protein GogB; Provisional
Probab=63.81 E-value=7.9 Score=30.96 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=44.6
Q ss_pred ccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhc
Q 037671 84 KCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNK 162 (187)
Q Consensus 84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 162 (187)
..|+++++|++++|. ++.-. .--++|+.|.+++ ..++. +.. .-.++|++|++++|..+. .-
T Consensus 49 ~~~~~l~~L~Is~c~-L~sLP-----~LP~sLtsL~Lsnc~nLts--LP~--~LP~nLe~L~Ls~Cs~L~--------sL 110 (426)
T PRK15386 49 EEARASGRLYIKDCD-IESLP-----VLPNELTEITIENCNNLTT--LPG--SIPEGLEKLTVCHCPEIS--------GL 110 (426)
T ss_pred HHhcCCCEEEeCCCC-CcccC-----CCCCCCcEEEccCCCCccc--CCc--hhhhhhhheEccCccccc--------cc
Confidence 447999999999884 44421 1124699999988 33321 110 113579999999885543 11
Q ss_pred CCCCcEEEeeCC
Q 037671 163 CGRLESINVWGT 174 (187)
Q Consensus 163 ~~~L~~L~l~~~ 174 (187)
.++|+.|+++++
T Consensus 111 P~sLe~L~L~~n 122 (426)
T PRK15386 111 PESVRSLEIKGS 122 (426)
T ss_pred ccccceEEeCCC
Confidence 235677776654
No 94
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=61.61 E-value=3.7 Score=26.30 Aligned_cols=109 Identities=22% Similarity=0.304 Sum_probs=48.0
Q ss_pred hcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCC--CCCHHHH
Q 037671 53 GYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGT--FITDESL 130 (187)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~ 130 (187)
..+.+|+.+.+.... ..+.+... ..|++|+.+.++.. +..-+- .....+++|+.+.+... .+.+
T Consensus 9 ~~~~~l~~i~~~~~~--~~I~~~~F------~~~~~l~~i~~~~~--~~~i~~-~~F~~~~~l~~i~~~~~~~~i~~--- 74 (129)
T PF13306_consen 9 YNCSNLESITFPNTI--KKIGENAF------SNCTSLKSINFPNN--LTSIGD-NAFSNCKSLESITFPNNLKSIGD--- 74 (129)
T ss_dssp TT-TT--EEEETST----EE-TTTT------TT-TT-SEEEESST--TSCE-T-TTTTT-TT-EEEEETSTT-EE-T---
T ss_pred hCCCCCCEEEECCCe--eEeChhhc------cccccccccccccc--ccccce-eeeeccccccccccccccccccc---
Confidence 456678888875310 12222222 34678999998743 222221 12345778999999762 2222
Q ss_pred HHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC--CCCHHH
Q 037671 131 YAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT--RLPLDC 180 (187)
Q Consensus 131 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~i~~~~ 180 (187)
.....++.|+.+.+.. .+..-+-.. ...+ +|+.+.+.++ .+.+.+
T Consensus 75 -~~F~~~~~l~~i~~~~--~~~~i~~~~-f~~~-~l~~i~~~~~~~~i~~~~ 121 (129)
T PF13306_consen 75 -NAFSNCTNLKNIDIPS--NITEIGSSS-FSNC-NLKEINIPSNITKIEENA 121 (129)
T ss_dssp -TTTTT-TTECEEEETT--T-BEEHTTT-TTT--T--EEE-TTB-SS----G
T ss_pred -ccccccccccccccCc--cccEEchhh-hcCC-CceEEEECCCccEECCcc
Confidence 2234578899999964 233333222 3456 7888888754 444433
No 95
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=60.60 E-value=2.8 Score=27.04 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCCCCEEEecCCCCC-HHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCC
Q 037671 103 KGVVQLISRASSLQHLNIGGTFIT-DESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRL 166 (187)
Q Consensus 103 ~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 166 (187)
..+..+...++.|.. +++.-... ...+..+...|+.+ ..++..-+.-....+..+..+|+.|
T Consensus 51 t~m~~mF~~~~~l~~-dls~w~~s~v~~~~~mF~~~~~l-~~~l~~wn~~~v~~~~~mF~~~~~l 113 (120)
T PF03382_consen 51 TNMSGMFAGCSSLNQ-DLSNWDTSNVTNMSNMFSGCSSL-NQDLSNWNTSSVTNMSSMFANCSNL 113 (120)
T ss_pred eeHHHHHhhhhhcCC-CcccccccccccHHHHHhhhHHc-CCchhhccccccccHHHHHhChHhc
Confidence 345556666777776 66652221 23455666666666 4444332111123344555556544
No 96
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=58.29 E-value=6 Score=18.09 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=10.1
Q ss_pred CCCcEEEeeCCCCC
Q 037671 164 GRLESINVWGTRLP 177 (187)
Q Consensus 164 ~~L~~L~l~~~~i~ 177 (187)
++|+.|++++|+++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 46788888888664
No 97
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=46.46 E-value=16 Score=16.64 Aligned_cols=16 Identities=6% Similarity=0.105 Sum_probs=12.1
Q ss_pred HHHhcCCCCcEEEeeC
Q 037671 158 FLVNKCGRLESINVWG 173 (187)
Q Consensus 158 ~l~~~~~~L~~L~l~~ 173 (187)
.+...+|+|+.||...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 4566789999998764
No 98
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=40.94 E-value=10 Score=31.70 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=21.9
Q ss_pred cceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC
Q 037671 140 LKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL 176 (187)
Q Consensus 140 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i 176 (187)
|.+||+++ ++++.-.+. +..+.+|+.|-|..|.+
T Consensus 213 Li~lDfSc-Nkis~iPv~--fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 213 LIRLDFSC-NKISYLPVD--FRKMRHLQVLQLENNPL 246 (722)
T ss_pred eeeeeccc-Cceeecchh--hhhhhhheeeeeccCCC
Confidence 77788864 566554432 34567777777777755
No 99
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=26.24 E-value=99 Score=17.05 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=11.4
Q ss_pred cEEEeeCCCCCHHHHHhh
Q 037671 167 ESINVWGTRLPLDCFIGL 184 (187)
Q Consensus 167 ~~L~l~~~~i~~~~~~~L 184 (187)
++..++||..+++-++.+
T Consensus 34 eSv~I~gC~~~~e~i~~i 51 (59)
T PF02495_consen 34 ESVTISGCEFTPEFIEAI 51 (59)
T ss_pred cEEEEECCCCCHHHHHHH
Confidence 456667777776666554
No 100
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=24.33 E-value=1.5e+02 Score=21.75 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=8.4
Q ss_pred cCCCCCEEEecCCCCCH
Q 037671 111 RASSLQHLNIGGTFITD 127 (187)
Q Consensus 111 ~~~~L~~L~l~~~~~~~ 127 (187)
.|.+++--.|.++++.|
T Consensus 194 lcaN~eGA~L~gcNfed 210 (302)
T KOG1665|consen 194 LCANAEGASLKGCNFED 210 (302)
T ss_pred eecccccccccCcCCCC
Confidence 34555555555544443
Done!