Query 037671
Match_columns 187
No_of_seqs 124 out of 1141
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 04:46:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037671.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037671hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.9 2.6E-22 9E-27 151.5 17.1 177 1-185 19-244 (336)
2 2p1m_B Transport inhibitor res 99.8 7.8E-19 2.7E-23 141.6 10.9 165 1-174 16-221 (594)
3 3ogk_B Coronatine-insensitive 99.7 1.7E-17 5.9E-22 133.8 11.5 166 1-176 23-204 (592)
4 3un9_A NLR family member X1; l 99.7 7.5E-16 2.6E-20 118.0 14.2 147 34-186 104-261 (372)
5 3ogk_B Coronatine-insensitive 99.7 3.8E-15 1.3E-19 120.1 16.3 145 38-185 385-534 (592)
6 3e4g_A ATP synthase subunit S, 99.6 1.9E-15 6.4E-20 103.3 9.7 103 57-167 62-170 (176)
7 3e4g_A ATP synthase subunit S, 99.6 7E-16 2.4E-20 105.4 7.6 93 86-181 60-157 (176)
8 2ast_B S-phase kinase-associat 99.6 1.3E-14 4.5E-19 109.3 14.3 144 34-184 121-268 (336)
9 2p1m_B Transport inhibitor res 99.6 4.3E-14 1.5E-18 113.9 17.5 96 86-184 431-526 (594)
10 3un9_A NLR family member X1; l 99.6 4.6E-14 1.6E-18 108.1 13.7 144 34-185 75-232 (372)
11 1io0_A Tropomodulin; LRR prote 99.6 1E-13 3.4E-18 96.3 13.3 131 45-180 25-167 (185)
12 1z7x_W Ribonuclease inhibitor; 99.5 3.1E-13 1E-17 105.9 15.2 146 34-185 259-419 (461)
13 2ca6_A RAN GTPase-activating p 99.5 3.4E-13 1.1E-17 103.6 15.1 13 164-176 303-315 (386)
14 2ca6_A RAN GTPase-activating p 99.5 9.3E-13 3.2E-17 101.1 14.7 141 34-180 97-260 (386)
15 1z7x_W Ribonuclease inhibitor; 99.5 8.7E-13 3E-17 103.3 14.2 144 34-185 31-191 (461)
16 1io0_A Tropomodulin; LRR prote 99.4 1.2E-11 4E-16 85.8 11.9 101 84-185 33-144 (185)
17 3goz_A Leucine-rich repeat-con 99.3 2.8E-12 9.6E-17 97.8 8.3 93 87-181 138-242 (362)
18 1pgv_A TMD-1, tropomodulin TMD 99.3 7.1E-11 2.4E-15 82.1 12.2 131 45-179 30-172 (197)
19 2ra8_A Uncharacterized protein 99.3 3.2E-11 1.1E-15 91.9 10.3 137 48-186 164-329 (362)
20 3goz_A Leucine-rich repeat-con 99.2 1.5E-11 5E-16 93.8 7.7 145 34-184 25-187 (362)
21 2je0_A Acidic leucine-rich nuc 99.1 2.9E-11 1E-15 80.6 3.8 127 34-172 20-148 (149)
22 4ezg_A Putative uncharacterize 99.1 1.4E-10 4.6E-15 81.1 7.2 127 34-178 47-173 (197)
23 4ezg_A Putative uncharacterize 99.1 9.5E-11 3.3E-15 81.8 5.7 126 34-178 69-195 (197)
24 2ell_A Acidic leucine-rich nuc 99.1 9.6E-12 3.3E-16 84.7 0.4 132 34-177 27-160 (168)
25 2ra8_A Uncharacterized protein 99.1 3.2E-09 1.1E-13 80.9 14.0 137 34-175 196-341 (362)
26 1pgv_A TMD-1, tropomodulin TMD 99.0 1.8E-09 6.2E-14 75.0 9.6 101 84-185 38-150 (197)
27 2je0_A Acidic leucine-rich nuc 99.0 2.1E-10 7.2E-15 76.4 4.7 112 55-178 16-127 (149)
28 1wwl_A Monocyte differentiatio 98.9 1.2E-09 4.1E-14 81.5 6.4 14 53-66 118-131 (312)
29 2ell_A Acidic leucine-rich nuc 98.9 3.1E-10 1.1E-14 77.1 1.7 112 55-178 23-134 (168)
30 4fmz_A Internalin; leucine ric 98.9 4.8E-09 1.7E-13 79.1 7.7 123 35-178 203-325 (347)
31 4glp_A Monocyte differentiatio 98.8 2.9E-09 1E-13 79.3 5.1 13 54-66 115-127 (310)
32 4fmz_A Internalin; leucine ric 98.8 1.3E-08 4.6E-13 76.7 8.0 122 35-177 225-346 (347)
33 4glp_A Monocyte differentiatio 98.8 1.4E-09 4.9E-14 81.0 2.6 65 112-177 168-237 (310)
34 1h6t_A Internalin B; cell adhe 98.8 1.4E-08 4.7E-13 75.1 6.5 59 112-177 133-191 (291)
35 1wwl_A Monocyte differentiatio 98.8 4.4E-09 1.5E-13 78.5 3.9 12 55-66 94-105 (312)
36 1a9n_A U2A', U2A'; complex (nu 98.7 5E-09 1.7E-13 71.7 2.5 131 34-179 22-155 (176)
37 3o6n_A APL1; leucine-rich repe 98.7 4E-09 1.4E-13 80.9 2.2 131 35-185 230-360 (390)
38 1h6u_A Internalin H; cell adhe 98.7 2.4E-08 8.1E-13 74.4 6.3 30 34-66 44-73 (308)
39 2z66_A Variable lymphocyte rec 98.7 2.5E-10 8.5E-15 84.8 -5.1 12 165-176 249-260 (306)
40 1m9s_A Internalin B; cell inva 98.7 2.6E-08 8.9E-13 80.8 6.1 81 86-177 108-188 (605)
41 2v70_A SLIT-2, SLIT homolog 2 98.7 6.8E-10 2.3E-14 78.9 -3.2 131 35-177 36-166 (220)
42 1h6t_A Internalin B; cell adhe 98.6 5.7E-08 1.9E-12 71.8 6.6 123 34-179 49-171 (291)
43 3v47_A TOLL-like receptor 5B a 98.6 4.3E-09 1.5E-13 82.2 0.3 32 34-66 33-64 (455)
44 1h6u_A Internalin H; cell adhe 98.6 5.5E-08 1.9E-12 72.4 6.1 30 34-66 66-95 (308)
45 3rfs_A Internalin B, repeat mo 98.6 1E-08 3.6E-13 74.9 1.4 13 54-66 61-73 (272)
46 3v47_A TOLL-like receptor 5B a 98.6 2.1E-08 7.1E-13 78.3 3.2 11 56-66 30-40 (455)
47 1ds9_A Outer arm dynein; leuci 98.6 4E-09 1.4E-13 73.6 -0.9 112 51-178 43-154 (198)
48 2o6s_A Variable lymphocyte rec 98.6 5.4E-09 1.8E-13 73.4 -0.3 131 34-177 31-161 (208)
49 2z62_A TOLL-like receptor 4, v 98.6 5.9E-09 2E-13 76.3 -0.2 133 34-178 31-163 (276)
50 3oja_B Anopheles plasmodium-re 98.6 1.6E-08 5.6E-13 81.8 2.2 131 35-185 236-366 (597)
51 1ozn_A Reticulon 4 receptor; N 98.6 5.2E-09 1.8E-13 76.9 -0.7 65 111-178 127-191 (285)
52 2xot_A Amphoterin-induced prot 98.6 2.7E-09 9.2E-14 81.3 -2.5 132 35-177 43-176 (361)
53 1a9n_A U2A', U2A'; complex (nu 98.6 1.8E-08 6.3E-13 68.8 1.9 110 55-178 18-127 (176)
54 1m9s_A Internalin B; cell inva 98.6 1.8E-08 6E-13 81.8 2.0 85 84-179 128-212 (605)
55 4fcg_A Uncharacterized protein 98.6 5.6E-09 1.9E-13 78.5 -0.9 75 35-122 85-159 (328)
56 1xeu_A Internalin C; cellular 98.6 4.7E-08 1.6E-12 71.2 4.1 120 34-177 44-163 (263)
57 2z7x_B TOLL-like receptor 1, v 98.6 1.9E-08 6.5E-13 79.9 2.1 124 35-176 25-150 (520)
58 3vq2_A TLR4, TOLL-like recepto 98.5 2.8E-09 9.7E-14 86.1 -3.3 11 55-65 423-433 (606)
59 1ozn_A Reticulon 4 receptor; N 98.5 1.7E-08 5.7E-13 74.2 1.1 87 86-177 152-238 (285)
60 2z63_A TOLL-like receptor 4, v 98.5 2.2E-09 7.5E-14 86.0 -4.0 89 86-178 444-532 (570)
61 2o6q_A Variable lymphocyte rec 98.5 8.5E-09 2.9E-13 75.3 -0.9 14 163-176 204-217 (270)
62 3rfs_A Internalin B, repeat mo 98.5 1.3E-08 4.3E-13 74.5 -0.2 30 34-66 66-95 (272)
63 3m19_A Variable lymphocyte rec 98.5 2.4E-08 8.3E-13 72.1 1.0 64 112-178 130-193 (251)
64 1xeu_A Internalin C; cellular 98.5 5.5E-08 1.9E-12 70.8 2.9 122 34-179 66-187 (263)
65 1o6v_A Internalin A; bacterial 98.5 2E-07 6.8E-12 73.2 6.2 60 111-177 307-366 (466)
66 3m19_A Variable lymphocyte rec 98.5 1E-08 3.6E-13 74.0 -1.0 131 34-177 38-168 (251)
67 2z7x_B TOLL-like receptor 1, v 98.5 1.4E-07 4.7E-12 75.0 5.3 86 54-147 322-408 (520)
68 4fcg_A Uncharacterized protein 98.5 2.9E-08 1E-12 74.6 1.1 31 34-66 107-137 (328)
69 2v9t_B SLIT homolog 2 protein 98.5 2E-08 6.9E-13 71.2 0.1 131 34-177 35-165 (220)
70 4g8a_A TOLL-like receptor 4; l 98.5 2.4E-08 8.2E-13 80.8 0.6 132 34-177 55-186 (635)
71 2v9t_B SLIT homolog 2 protein 98.5 2.8E-08 9.6E-13 70.5 0.7 110 56-177 32-141 (220)
72 3e6j_A Variable lymphocyte rec 98.5 4.5E-08 1.5E-12 69.8 1.8 131 35-179 44-174 (229)
73 3e6j_A Variable lymphocyte rec 98.5 5.5E-08 1.9E-12 69.4 2.2 109 56-177 40-148 (229)
74 3o6n_A APL1; leucine-rich repe 98.5 2.7E-08 9.2E-13 76.3 0.6 132 35-179 49-180 (390)
75 2z80_A TOLL-like receptor 2, v 98.4 2.8E-08 9.5E-13 75.3 0.5 132 35-177 56-187 (353)
76 3a79_B TLR6, VLRB.59, TOLL-lik 98.4 4.5E-08 1.5E-12 78.6 1.6 133 34-184 34-166 (562)
77 1o6v_A Internalin A; bacterial 98.4 5.2E-07 1.8E-11 70.8 7.4 38 136-177 307-344 (466)
78 3o53_A Protein LRIM1, AGAP0063 98.4 7.6E-08 2.6E-12 71.9 2.1 61 112-177 190-250 (317)
79 3t6q_A CD180 antigen; protein- 98.4 2.6E-08 8.8E-13 80.5 -0.5 13 54-66 398-410 (606)
80 3vq2_A TLR4, TOLL-like recepto 98.4 2.7E-08 9.1E-13 80.5 -0.4 133 34-178 35-167 (606)
81 3zyj_A Leucine-rich repeat-con 98.4 4.3E-08 1.5E-12 76.5 0.5 65 53-126 85-149 (440)
82 2z63_A TOLL-like receptor 4, v 98.4 3.7E-08 1.3E-12 78.9 0.1 133 34-178 31-163 (570)
83 2o6s_A Variable lymphocyte rec 98.4 7.6E-08 2.6E-12 67.4 1.7 111 55-177 27-137 (208)
84 2z81_A CD282 antigen, TOLL-lik 98.4 4.1E-08 1.4E-12 78.4 0.3 134 34-178 29-162 (549)
85 2z81_A CD282 antigen, TOLL-lik 98.4 7.2E-06 2.5E-10 65.4 13.2 67 110-177 331-400 (549)
86 2o6r_A Variable lymphocyte rec 98.4 8.7E-08 3E-12 65.5 1.6 112 55-178 27-138 (177)
87 3zyi_A Leucine-rich repeat-con 98.4 4.3E-08 1.5E-12 76.7 -0.0 87 53-149 96-182 (452)
88 2z80_A TOLL-like receptor 2, v 98.4 2.3E-07 7.7E-12 70.2 3.7 43 135-179 274-316 (353)
89 3oja_B Anopheles plasmodium-re 98.4 6.6E-08 2.3E-12 78.3 0.7 116 51-178 70-185 (597)
90 3t6q_A CD180 antigen; protein- 98.4 3.4E-08 1.2E-12 79.8 -1.1 131 34-177 36-166 (606)
91 1ds9_A Outer arm dynein; leuci 98.3 5E-08 1.7E-12 68.0 -0.2 128 34-179 51-187 (198)
92 2o6q_A Variable lymphocyte rec 98.3 9.7E-08 3.3E-12 69.7 1.2 131 34-177 64-194 (270)
93 3o53_A Protein LRIM1, AGAP0063 98.3 9.7E-08 3.3E-12 71.3 1.2 110 54-177 118-227 (317)
94 2z66_A Variable lymphocyte rec 98.3 2E-08 6.9E-13 74.5 -2.7 134 35-179 105-238 (306)
95 3oja_A Leucine-rich immune mol 98.3 1.8E-07 6.3E-12 73.9 2.2 17 162-178 235-251 (487)
96 1xku_A Decorin; proteoglycan, 98.3 1.3E-07 4.6E-12 70.8 1.3 64 111-178 214-277 (330)
97 3j0a_A TOLL-like receptor 5; m 98.3 3.1E-08 1.1E-12 83.2 -2.4 135 34-178 27-162 (844)
98 1fs1_A SKP2 F-BOX, cyclin A/CD 98.3 2.2E-07 7.6E-12 50.5 1.8 32 1-33 19-51 (53)
99 4g8a_A TOLL-like receptor 4; l 98.3 1E-07 3.6E-12 77.0 0.5 110 56-177 52-161 (635)
100 2z62_A TOLL-like receptor 4, v 98.3 1.1E-07 3.7E-12 69.5 0.5 111 56-178 28-138 (276)
101 2id5_A Lingo-1, leucine rich r 98.3 2.4E-07 8.2E-12 72.8 2.5 38 137-176 151-188 (477)
102 2id5_A Lingo-1, leucine rich r 98.3 7.2E-08 2.5E-12 75.8 -0.6 132 34-178 35-166 (477)
103 3rgz_A Protein brassinosteroid 98.3 1.1E-07 3.8E-12 79.1 0.1 40 136-178 198-237 (768)
104 1xku_A Decorin; proteoglycan, 98.3 4.1E-07 1.4E-11 68.1 3.2 38 53-97 73-110 (330)
105 3zyi_A Leucine-rich repeat-con 98.3 1.1E-07 3.7E-12 74.4 -0.2 39 137-177 241-279 (452)
106 3a79_B TLR6, VLRB.59, TOLL-lik 98.2 3.6E-07 1.2E-11 73.3 2.7 65 54-126 351-416 (562)
107 3rgz_A Protein brassinosteroid 98.2 3.1E-07 1.1E-11 76.4 2.3 62 112-177 199-260 (768)
108 1ogq_A PGIP-2, polygalacturona 98.2 4.8E-08 1.6E-12 72.9 -2.5 132 34-177 53-187 (313)
109 2wfh_A SLIT homolog 2 protein 98.2 2.4E-07 8.2E-12 64.3 1.2 109 56-177 31-139 (193)
110 4ecn_A Leucine-rich repeat pro 98.2 6.5E-07 2.2E-11 75.4 3.6 111 54-177 489-608 (876)
111 1p9a_G Platelet glycoprotein I 98.2 1.1E-07 3.7E-12 70.2 -0.9 30 34-66 58-87 (290)
112 1dce_A Protein (RAB geranylger 98.2 4.9E-07 1.7E-11 72.8 2.8 105 57-178 442-547 (567)
113 2v70_A SLIT-2, SLIT homolog 2 98.2 2.4E-07 8.2E-12 65.6 0.9 129 34-178 14-143 (220)
114 1w8a_A SLIT protein; signaling 98.2 1.4E-07 4.8E-12 65.4 -0.4 112 56-178 29-140 (192)
115 4eco_A Uncharacterized protein 98.2 1.3E-06 4.6E-11 71.2 5.2 117 51-177 201-343 (636)
116 4ecn_A Leucine-rich repeat pro 98.2 2.8E-06 9.6E-11 71.6 7.1 117 51-177 443-586 (876)
117 3oja_A Leucine-rich immune mol 98.2 3.7E-07 1.3E-11 72.2 1.7 110 54-177 118-227 (487)
118 3bz5_A Internalin-J, INLJ; leu 98.2 8.5E-07 2.9E-11 69.6 3.3 75 34-126 45-119 (457)
119 1p9a_G Platelet glycoprotein I 98.2 3.1E-07 1.1E-11 67.8 0.8 127 35-177 35-161 (290)
120 3j0a_A TOLL-like receptor 5; m 98.2 1.5E-07 5.1E-12 79.2 -1.3 115 54-178 22-137 (844)
121 3zyj_A Leucine-rich repeat-con 98.2 4.6E-07 1.6E-11 70.6 1.5 63 111-178 183-245 (440)
122 2xot_A Amphoterin-induced prot 98.1 2.7E-07 9.3E-12 70.1 0.0 112 56-178 39-150 (361)
123 1ziw_A TOLL-like receptor 3; i 98.1 2.4E-07 8.1E-12 75.9 -0.9 88 86-177 96-184 (680)
124 1dce_A Protein (RAB geranylger 98.1 9.5E-07 3.2E-11 71.2 2.6 121 34-171 444-567 (567)
125 1ziw_A TOLL-like receptor 3; i 98.1 7.9E-07 2.7E-11 72.8 1.9 131 34-177 28-158 (680)
126 2xwt_C Thyrotropin receptor; s 98.1 2E-07 6.9E-12 66.7 -1.6 130 35-176 35-168 (239)
127 3bz5_A Internalin-J, INLJ; leu 98.1 2.3E-06 7.8E-11 67.2 4.0 102 54-178 40-141 (457)
128 2ft3_A Biglycan; proteoglycan, 98.0 4E-07 1.4E-11 68.3 -0.8 110 56-177 193-307 (332)
129 2ft3_A Biglycan; proteoglycan, 98.0 3.3E-07 1.1E-11 68.7 -1.4 107 57-179 173-279 (332)
130 3g06_A SSPH2 (leucine-rich rep 98.0 3.5E-06 1.2E-10 68.5 4.4 85 86-184 220-304 (622)
131 4b8c_D Glucose-repressible alc 98.0 8.1E-07 2.8E-11 73.6 0.6 111 52-178 220-330 (727)
132 1ogq_A PGIP-2, polygalacturona 98.0 3E-07 1E-11 68.5 -2.0 86 52-147 97-183 (313)
133 4eco_A Uncharacterized protein 98.0 2.4E-06 8.2E-11 69.7 2.8 89 54-152 247-343 (636)
134 1w8a_A SLIT protein; signaling 97.9 8E-07 2.8E-11 61.5 -1.8 107 34-150 32-138 (192)
135 3g39_A Variable lymphocyte rec 97.8 2.6E-06 8.8E-11 57.8 0.1 59 86-147 53-111 (170)
136 3rw6_A Nuclear RNA export fact 97.8 1.7E-05 5.8E-10 57.8 4.4 85 84-172 167-259 (267)
137 2wfh_A SLIT homolog 2 protein 97.8 4E-06 1.4E-10 58.1 0.7 105 34-150 34-138 (193)
138 2xwt_C Thyrotropin receptor; s 97.8 2.6E-06 8.9E-11 60.8 -0.5 109 56-177 31-144 (239)
139 3cvr_A Invasion plasmid antige 97.7 1.1E-05 3.6E-10 65.1 2.3 29 34-66 62-90 (571)
140 2r9u_A Variable lymphocyte rec 97.7 5.2E-06 1.8E-10 56.5 0.1 59 86-147 56-114 (174)
141 2o6r_A Variable lymphocyte rec 97.7 6.2E-06 2.1E-10 56.1 -0.1 105 34-149 31-135 (177)
142 3rw6_A Nuclear RNA export fact 97.6 0.00013 4.6E-09 53.0 6.8 89 49-146 163-259 (267)
143 3sb4_A Hypothetical leucine ri 97.6 7.7E-05 2.6E-09 55.8 5.0 33 34-67 28-60 (329)
144 3cvr_A Invasion plasmid antige 97.5 3.2E-05 1.1E-09 62.3 2.3 89 86-183 159-249 (571)
145 3g06_A SSPH2 (leucine-rich rep 97.5 9.5E-05 3.2E-09 60.2 4.6 54 56-126 61-114 (622)
146 3l2o_B F-box only protein 4; s 97.4 3.3E-05 1.1E-09 56.6 1.0 31 1-32 15-46 (312)
147 1jl5_A Outer protein YOPM; leu 97.3 0.00011 3.8E-09 57.5 2.8 15 162-176 235-249 (454)
148 2r9u_A Variable lymphocyte rec 97.3 7.4E-05 2.5E-09 50.7 1.5 88 86-178 32-119 (174)
149 1jl5_A Outer protein YOPM; leu 97.3 0.00017 5.7E-09 56.5 3.4 14 112-125 236-249 (454)
150 4b8c_D Glucose-repressible alc 97.2 4.8E-05 1.6E-09 63.1 -0.0 86 84-177 221-306 (727)
151 3g39_A Variable lymphocyte rec 97.2 9.1E-05 3.1E-09 50.1 1.1 89 86-179 29-117 (170)
152 3sb4_A Hypothetical leucine ri 97.2 0.00018 6.1E-09 53.8 2.6 21 45-65 215-235 (329)
153 4ay9_X Follicle-stimulating ho 97.1 2.6E-05 8.9E-10 58.9 -2.6 62 113-177 154-215 (350)
154 2ifg_A High affinity nerve gro 97.0 8.7E-05 3E-09 55.8 -0.5 86 52-148 27-113 (347)
155 2e31_A FBS1, F-box only protei 96.9 0.0002 7E-09 52.6 0.6 32 1-33 61-94 (297)
156 1p22_A F-BOX/WD-repeat protein 96.8 0.00045 1.5E-08 53.3 1.7 32 1-33 25-57 (435)
157 3v7d_B Cell division control p 96.7 0.00044 1.5E-08 53.6 1.5 32 1-33 25-58 (464)
158 2ifg_A High affinity nerve gro 96.4 0.0012 4.1E-08 49.5 1.8 87 86-177 30-116 (347)
159 4ay9_X Follicle-stimulating ho 96.3 0.00018 6E-09 54.3 -3.2 108 56-174 30-138 (350)
160 2ovr_B FBW7, F-BOX/WD repeat p 96.0 0.0015 5E-08 50.5 0.6 32 1-33 29-61 (445)
161 4gt6_A Cell surface protein; l 94.8 0.028 9.7E-07 42.9 4.1 103 53-174 262-367 (394)
162 4gt6_A Cell surface protein; l 93.2 0.068 2.3E-06 40.7 3.6 104 52-176 284-390 (394)
163 4fdw_A Leucine rich hypothetic 92.8 0.062 2.1E-06 41.3 2.8 57 111-175 298-356 (401)
164 4fdw_A Leucine rich hypothetic 92.4 0.03 1E-06 43.1 0.6 13 53-65 177-189 (401)
165 4h09_A Hypothetical leucine ri 90.0 0.038 1.3E-06 41.8 -1.0 79 86-174 262-343 (379)
166 4fs7_A Uncharacterized protein 88.9 0.061 2.1E-06 41.0 -0.6 79 85-174 295-376 (394)
167 4fs7_A Uncharacterized protein 87.7 0.18 6.1E-06 38.4 1.3 31 112-146 342-374 (394)
168 4h09_A Hypothetical leucine ri 84.4 0.31 1E-05 36.7 1.1 89 84-181 237-329 (379)
169 3rfe_A Platelet glycoprotein I 81.3 0.74 2.5E-05 29.2 1.9 37 113-150 31-67 (130)
170 2lz0_A Uncharacterized protein 20.2 56 0.0019 19.3 1.9 35 84-122 17-52 (100)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2.6e-22 Score=151.54 Aligned_cols=177 Identities=21% Similarity=0.348 Sum_probs=129.8
Q ss_pred CccccccchhHHHHHHHhhHHHHHHhh-hhhcccce--------------------------------------------
Q 037671 1 FLFVFVIPFVCLLRVSSVCKKWKLGVK-QSLARRKN-------------------------------------------- 35 (187)
Q Consensus 1 ~I~~~l~~~~~~~~~~~vck~w~~~~~-~~l~~~~~-------------------------------------------- 35 (187)
+||+||+ .+|+.++++|||+|++++. +.+|+..+
T Consensus 19 ~If~~L~-~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~ 97 (336)
T 2ast_B 19 GIFSCLC-LPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH 97 (336)
T ss_dssp HHHTTSC-HHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCE
T ss_pred HHHHhCC-HHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCE
Confidence 4899999 5999999999999999763 44454321
Q ss_pred eeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCC
Q 037671 36 LSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSL 115 (187)
Q Consensus 36 l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 115 (187)
+++.++.++...+......+++|++|++++| .+++.....+ ..+++|++|++++|..+++.++......+++|
T Consensus 98 L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~----~l~~~~~~~l---~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 98 MDLSNSVIEVSTLHGILSQCSKLQNLSLEGL----RLSDPIVNTL---AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp EECTTCEECHHHHHHHHTTBCCCSEEECTTC----BCCHHHHHHH---TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred EEccCCCcCHHHHHHHHhhCCCCCEEeCcCc----ccCHHHHHHH---hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 2223333444445666666777777777754 5666666555 23788888888888558887777777778888
Q ss_pred CEEEecCC-CCCHHHHHHHHhcCC-ccceeeccCCC-CCcHHHHHHHHhcCCCCcEEEeeCCC-CCHHHHHhhh
Q 037671 116 QHLNIGGT-FITDESLYAIANSCP-QLKSIVLWSCR-QVTGNGLLFLVNKCGRLESINVWGTR-LPLDCFIGLL 185 (187)
Q Consensus 116 ~~L~l~~~-~~~~~~~~~l~~~~~-~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~L~ 185 (187)
++|+++++ .+++.++......+| +|++|++++|. .+++.++..+...+|+|++|++++|. +++++...+.
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 88888887 888877777777788 88888888865 67777777777778888888888887 7777665543
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=7.8e-19 Score=141.60 Aligned_cols=165 Identities=21% Similarity=0.259 Sum_probs=84.4
Q ss_pred CccccccchhHHHHHHHhhHHHHHHhhhhhcccceeeecccccC------------------------------------
Q 037671 1 FLFVFVIPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMD------------------------------------ 44 (187)
Q Consensus 1 ~I~~~l~~~~~~~~~~~vck~w~~~~~~~l~~~~~l~~~~~~l~------------------------------------ 44 (187)
+||+||+..+|+.++++|||+|+++. . +.++++.+.++...
T Consensus 16 ~If~~L~~~~d~~~~s~vck~W~~~~-~--~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~ 92 (594)
T 2p1m_B 16 HVFSFIQLDKDRNSVSLVCKSWYEIE-R--WCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGY 92 (594)
T ss_dssp HHHHTCCCHHHHHHHHTSCHHHHHHH-H--HHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCB
T ss_pred HHHhhcCCchhHHHHHHHHHHHHHhh-h--hhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccch
Confidence 48999994499999999999999972 1 22233433332111
Q ss_pred -HHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 037671 45 -DDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGT 123 (187)
Q Consensus 45 -~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 123 (187)
...+..+...+++|++|+++++ .+++..+..+ ...+++|++|++++|..++..++..+...+++|++|+++++
T Consensus 93 ~~~~l~~l~~~~~~L~~L~L~~~----~~~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 166 (594)
T 2p1m_B 93 VYPWIEAMSSSYTWLEEIRLKRM----VVTDDCLELI--AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESC----BCCHHHHHHH--HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC
T ss_pred hhHHHHHHHHhCCCCCeEEeeCc----EEcHHHHHHH--HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC
Confidence 1122333344445555555432 3444444443 12245555555555533444445444444555555555544
Q ss_pred CCCHHH---HHHHHhcCCccceeeccCCC-CCcHHHHHHHHhcCCCCcEEEeeCC
Q 037671 124 FITDES---LYAIANSCPQLKSIVLWSCR-QVTGNGLLFLVNKCGRLESINVWGT 174 (187)
Q Consensus 124 ~~~~~~---~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~ 174 (187)
.+++.+ +..+...+++|++|++++|. .+++..+..+...+|+|++|++++|
T Consensus 167 ~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 167 DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred ccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 333222 22222334455555555442 3445555555555666666666665
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=1.7e-17 Score=133.78 Aligned_cols=166 Identities=16% Similarity=0.240 Sum_probs=79.7
Q ss_pred Cccccc-cchhHHHHHHHhhHHHHHHhhhhhcccceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCC----------
Q 037671 1 FLFVFV-IPFVCLLRVSSVCKKWKLGVKQSLARRKNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWG---------- 69 (187)
Q Consensus 1 ~I~~~l-~~~~~~~~~~~vck~w~~~~~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~---------- 69 (187)
+||+|| + .+++.++++|||+|+.+. .+.++.+...++. ......+...+++|++|+++++...
T Consensus 23 ~I~~~L~~-~~d~~~~s~vck~W~~~~---~~~~~~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 96 (592)
T 3ogk_B 23 QVMTYITD-PKDRDSASLVCRRWFKID---SETREHVTMALCY--TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENW 96 (592)
T ss_dssp HHHTTCCC-HHHHHHHTTSCHHHHHHH---HHHCCEEEESCGG--GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTS
T ss_pred HHHHhcCC-HHHHHHHHHHhHHHHHhh---hccccEEEEeecc--ccChHHHHHhCCCCeEEEecCCcchhhcccccccc
Confidence 489999 6 699999999999999973 2233334333221 0112334444555555555432100
Q ss_pred cccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC-CCEEEecCCC-CCHHHHHHHHhcCCccceeeccC
Q 037671 70 CQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS-LQHLNIGGTF-ITDESLYAIANSCPQLKSIVLWS 147 (187)
Q Consensus 70 ~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~ 147 (187)
..+...++..+ ...+++|++|+++++. +++..+..+...+++ |+.|+++++. +++.++..+...||+|++|++++
T Consensus 97 ~~~~~~~l~~l--~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 173 (592)
T 3ogk_B 97 GGYVTPWVTEI--SNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE 173 (592)
T ss_dssp CCBCHHHHHHH--HHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTT
T ss_pred cccchHHHHHH--HhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcc
Confidence 00011111111 1234555555555543 555544444443333 5555555532 44444444444455555555554
Q ss_pred CCCCcHHH---HHHHHhcCCCCcEEEeeCCCC
Q 037671 148 CRQVTGNG---LLFLVNKCGRLESINVWGTRL 176 (187)
Q Consensus 148 ~~~~~~~~---~~~l~~~~~~L~~L~l~~~~i 176 (187)
| .+++.+ +..+...+++|++|++++|.+
T Consensus 174 ~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~ 204 (592)
T 3ogk_B 174 S-SFSEKDGKWLHELAQHNTSLEVLNFYMTEF 204 (592)
T ss_dssp C-EEECCCSHHHHHHHHHCCCCCEEECTTCCC
T ss_pred c-cccCcchhHHHHHHhcCCCccEEEeeccCC
Confidence 3 332222 333334444444444444433
No 4
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.68 E-value=7.5e-16 Score=118.00 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=106.5
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh--ccCCCccEEEecCCCCCCHHHHHHHH--
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA--KCISNLTSISLWGLTGITDKGVVQLI-- 109 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~-- 109 (187)
..+++.++.+++.....+...+++|+.|++++| .+++.+...++.. ..+++|++|++++|. +++.++..+.
T Consensus 104 ~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n----~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 178 (372)
T 3un9_A 104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN----SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG 178 (372)
T ss_dssp EEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS----CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred eEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC----CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence 345666666666666666665666777777654 6777776666432 246778888888885 8777766554
Q ss_pred -hcCCCCCEEEecCCCCCHHHHHHHH---hcCCccceeeccCCCCCcHHHHHHHHh---cCCCCcEEEeeCCCCCHHHHH
Q 037671 110 -SRASSLQHLNIGGTFITDESLYAIA---NSCPQLKSIVLWSCRQVTGNGLLFLVN---KCGRLESINVWGTRLPLDCFI 182 (187)
Q Consensus 110 -~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~~~~~ 182 (187)
..+++|++|++++|.+++.++..++ ..++.|++|++++| .+++.++..++. .+++|++|++++|.+++.+..
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~ 257 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQ 257 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHH
Confidence 4578899999999888888876665 34567999999885 888888777765 358899999999999998887
Q ss_pred hhhc
Q 037671 183 GLLT 186 (187)
Q Consensus 183 ~L~~ 186 (187)
.|..
T Consensus 258 ~L~~ 261 (372)
T 3un9_A 258 VLRD 261 (372)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=3.8e-15 Score=120.10 Aligned_cols=145 Identities=19% Similarity=0.245 Sum_probs=98.3
Q ss_pred ecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccch----hhhhhhhhhccCCCccEEEecCCC-CCCHHHHHHHHhcC
Q 037671 38 FAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITD----NGLYRMSFAKCISNLTSISLWGLT-GITDKGVVQLISRA 112 (187)
Q Consensus 38 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~l~~l~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~ 112 (187)
+....+++..+..+...+++|++|+++++.....+++ .++..+ ...+++|++|+++.|. .+++.++..+...+
T Consensus 385 l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~--~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~ 462 (592)
T 3ogk_B 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL--LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462 (592)
T ss_dssp EEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH--HHHCTTCCEEEEECCGGGCCHHHHHHHHHSC
T ss_pred eecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH--HHhCCCCCEEEEecCCCCccHHHHHHHHHhC
Confidence 3333444444444444455555555542210113332 233333 2346777777776554 26777777777778
Q ss_pred CCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHhhh
Q 037671 113 SSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGLL 185 (187)
Q Consensus 113 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~L~ 185 (187)
++|+.|+++++.+++.++..+...|++|++|++++|. +++.++..++..+++|++|++++|+++++|+..++
T Consensus 463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~ 534 (592)
T 3ogk_B 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534 (592)
T ss_dssp TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG
T ss_pred ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH
Confidence 8888888888888888888888888888888888874 78888888888888888899988888888877664
No 6
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.63 E-value=1.9e-15 Score=103.29 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=66.8
Q ss_pred CCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhc---CCCCCEEEecCC-CCCHHHHHH
Q 037671 57 SLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISR---ASSLQHLNIGGT-FITDESLYA 132 (187)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~-~~~~~~~~~ 132 (187)
.|++||+++ |.+++.|+..+ ..|++|++|++++|..+++.++..+... +++|++|++++| .++|+++..
T Consensus 62 ~L~~LDLs~----~~Itd~GL~~L---~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 62 KIQAIDATD----SCIMSIGFDHM---EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CEEEEEEES----CCCCGGGGGGG---TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred eEeEEeCcC----CCccHHHHHHh---cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 467777774 35777777665 2467777777777766777777766652 456777777774 477777766
Q ss_pred HHhcCCccceeeccCCCCCcHHH--HHHHHhcCCCCc
Q 037671 133 IANSCPQLKSIVLWSCRQVTGNG--LLFLVNKCGRLE 167 (187)
Q Consensus 133 l~~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~ 167 (187)
++. ||+|++|++++|..+++.+ +..+-+..|+++
T Consensus 135 L~~-~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 135 LHH-FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp GGG-CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred Hhc-CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 653 6777777777777777665 334445566654
No 7
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.63 E-value=7e-16 Score=105.42 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=84.2
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHhc---CCccceeeccCCCCCcHHHHHHHHh
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGT-FITDESLYAIANS---CPQLKSIVLWSCRQVTGNGLLFLVN 161 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~l~~ 161 (187)
..+|++|++++|. +++.++..+ ..|++|++|+|+++ .++|+++..++.. ++.|++|++++|..+||.|+..++
T Consensus 60 ~~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~- 136 (176)
T 3e4g_A 60 KYKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH- 136 (176)
T ss_dssp CCCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-
T ss_pred CceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-
Confidence 3579999999998 999999887 46999999999996 6999999999873 678999999999999999999987
Q ss_pred cCCCCcEEEeeCC-CCCHHHH
Q 037671 162 KCGRLESINVWGT-RLPLDCF 181 (187)
Q Consensus 162 ~~~~L~~L~l~~~-~i~~~~~ 181 (187)
.+++|++|++++| .+|+.++
T Consensus 137 ~~~~L~~L~L~~c~~Itd~gl 157 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEKEK 157 (176)
T ss_dssp GCTTCCEEEEESCTTCCCHHH
T ss_pred cCCCCCEEECCCCCCCCchHH
Confidence 5899999999999 7999874
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1.3e-14 Score=109.26 Aligned_cols=144 Identities=19% Similarity=0.286 Sum_probs=103.0
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.+++.....+. .+++|++|++++|. .+++.++..+ ...+++|++|++++|..+++.++......++
T Consensus 121 ~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~---~l~~~~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCS---GFSEFALQTL--LSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp SEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCB---SCCHHHHHHH--HHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred CEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCC---CCCHHHHHHH--HhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 5677777777766555444 47888888888542 5666555443 2447888888888884488777777777788
Q ss_pred -CCCEEEecCC--CCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC-CCCHHHHHhh
Q 037671 114 -SLQHLNIGGT--FITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT-RLPLDCFIGL 184 (187)
Q Consensus 114 -~L~~L~l~~~--~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~L 184 (187)
+|++|+++++ .+++..+......+|+|++|++++|..+++.++..+. .+++|++|++++| .++++++..+
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGG
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHH
Confidence 8888888887 6787777777777888888888887557777666554 4688888888887 6777765443
No 9
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=4.3e-14 Score=113.92 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=56.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR 165 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 165 (187)
+++|+.|++++ .+++.++..+...+++|+.|+++++.+++.++..++..||+|++|++++| .+++.++..++..+++
T Consensus 431 ~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 431 CKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLET 507 (594)
T ss_dssp CTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGG
T ss_pred CCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCC
Confidence 45555555543 25555555555555666666666666666666665555666666666665 3356665555555666
Q ss_pred CcEEEeeCCCCCHHHHHhh
Q 037671 166 LESINVWGTRLPLDCFIGL 184 (187)
Q Consensus 166 L~~L~l~~~~i~~~~~~~L 184 (187)
|+.|++++|.++++++..+
T Consensus 508 L~~L~l~~~~~~~~~~~~l 526 (594)
T 2p1m_B 508 MRSLWMSSCSVSFGACKLL 526 (594)
T ss_dssp SSEEEEESSCCBHHHHHHH
T ss_pred CCEEeeeCCCCCHHHHHHH
Confidence 6666666666666665554
No 10
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.57 E-value=4.6e-14 Score=108.08 Aligned_cols=144 Identities=15% Similarity=0.201 Sum_probs=117.8
Q ss_pred ceeeecccccCHHHHHHHHhc----CCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHH
Q 037671 34 KNLSFAGWKMDDDSTARLVGY----AYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLI 109 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 109 (187)
+.+++.++.+++.....+... .++|+.|++++| .+++.++..++ ..+++|++|++++|. +++.++..+.
T Consensus 75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n----~l~~~~~~~l~--~~L~~L~~L~Ls~n~-l~~~~~~~L~ 147 (372)
T 3un9_A 75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC----QLDPAGLRTLL--PVFLRARKLGLQLNS-LGPEACKDLR 147 (372)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC----CCCHHHHHHTH--HHHHTEEEEECCSSC-CCHHHHHHHH
T ss_pred CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC----CCCHHHHHHHH--HHHHhccHhhcCCCC-CCHHHHHHHH
Confidence 568889999988776665554 258999999976 78888887763 335789999999886 9998887765
Q ss_pred h----cCCCCCEEEecCCCCCHHHHHHHH---hcCCccceeeccCCCCCcHHHHHHHHh---cCCCCcEEEeeCCCCCHH
Q 037671 110 S----RASSLQHLNIGGTFITDESLYAIA---NSCPQLKSIVLWSCRQVTGNGLLFLVN---KCGRLESINVWGTRLPLD 179 (187)
Q Consensus 110 ~----~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~~ 179 (187)
. ..++|++|++++|.+++.++..++ ..++.|++|++++| .+++.++..++. .+++|++|++++|.+++.
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 4 368999999999999998877765 45788999999985 799999877764 457999999999999999
Q ss_pred HHHhhh
Q 037671 180 CFIGLL 185 (187)
Q Consensus 180 ~~~~L~ 185 (187)
+...+.
T Consensus 227 g~~~l~ 232 (372)
T 3un9_A 227 AALALA 232 (372)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887664
No 11
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.56 E-value=1e-13 Score=96.29 Aligned_cols=131 Identities=18% Similarity=0.179 Sum_probs=107.3
Q ss_pred HHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh-ccCCCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEe
Q 037671 45 DDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGITDKGVVQLIS---RASSLQHLNI 120 (187)
Q Consensus 45 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l 120 (187)
...+.......+.|++|++++|. .+++.+...++.+ ..+++|++|+++++. +++.+...+.. ..++|++|++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~---~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIM---NIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCT---TCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHhcCCCCCEEEecCCC---CCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEEC
Confidence 34566777788999999998531 7899988887643 447899999999886 99988766554 5789999999
Q ss_pred cCCCCCHHHHHHHHhc---CCccceeec--cCCCCCcHHHHHHHHhc---CCCCcEEEeeCCCCCHHH
Q 037671 121 GGTFITDESLYAIANS---CPQLKSIVL--WSCRQVTGNGLLFLVNK---CGRLESINVWGTRLPLDC 180 (187)
Q Consensus 121 ~~~~~~~~~~~~l~~~---~~~L~~L~l--~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~i~~~~ 180 (187)
++|.++++++..++.. .+.|++|++ ++ +.++++++..+++. .++|++|++++|.+++++
T Consensus 101 ~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 101 ESNFISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp CSSCCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 9999999998888755 467999999 66 59999997777654 589999999999999887
No 12
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.53 E-value=3.1e-13 Score=105.86 Aligned_cols=146 Identities=16% Similarity=0.199 Sum_probs=103.1
Q ss_pred ceeeecccccCHHHH---HHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh--ccCCCccEEEecCCCCCCHHHH---
Q 037671 34 KNLSFAGWKMDDDST---ARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA--KCISNLTSISLWGLTGITDKGV--- 105 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~--- 105 (187)
+.+++.++.+++... ......+++|++|++++| .+++.+...++.. ...++|++|++++|. ++..+.
T Consensus 259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n----~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l 333 (461)
T 1z7x_W 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN----ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHF 333 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC----CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC----CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHH
Confidence 455666666666543 333344677777777754 5666666555321 223578888888776 766654
Q ss_pred HHHHhcCCCCCEEEecCCCCCHHHHHHHHhc----CCccceeeccCCCCCcHHHHHHHHh---cCCCCcEEEeeCCCCCH
Q 037671 106 VQLISRASSLQHLNIGGTFITDESLYAIANS----CPQLKSIVLWSCRQVTGNGLLFLVN---KCGRLESINVWGTRLPL 178 (187)
Q Consensus 106 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~ 178 (187)
......+++|+.|+++++.+++.+...++.. ++.|++|++++| .+++.++..++. .+++|++|++++|.+++
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 3344467999999999999998887777653 568999999986 888877666653 47999999999999999
Q ss_pred HHHHhhh
Q 037671 179 DCFIGLL 185 (187)
Q Consensus 179 ~~~~~L~ 185 (187)
+++..+.
T Consensus 413 ~~~~~l~ 419 (461)
T 1z7x_W 413 AGILQLV 419 (461)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877664
No 13
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=3.4e-13 Score=103.62 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=5.0
Q ss_pred CCCcEEEeeCCCC
Q 037671 164 GRLESINVWGTRL 176 (187)
Q Consensus 164 ~~L~~L~l~~~~i 176 (187)
|+|+.|++++|.+
T Consensus 303 ~~L~~L~l~~N~l 315 (386)
T 2ca6_A 303 PDLLFLELNGNRF 315 (386)
T ss_dssp TTCCEEECTTSBS
T ss_pred CCceEEEccCCcC
Confidence 3333333333333
No 14
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=9.3e-13 Score=101.14 Aligned_cols=141 Identities=13% Similarity=0.102 Sum_probs=60.4
Q ss_pred ceeeecccccCHHH---HHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh-ccC---------CCccEEEecCCCCC
Q 037671 34 KNLSFAGWKMDDDS---TARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA-KCI---------SNLTSISLWGLTGI 100 (187)
Q Consensus 34 ~~l~~~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~-~~~---------~~L~~L~l~~~~~~ 100 (187)
+.+++.++.++..+ +...+..+++|++|++++| .+++.+...++.. ..+ ++|++|+++++. +
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n----~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l 171 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN----GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-L 171 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS----CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-C
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC----CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-C
Confidence 34555555554432 2233344556666666544 3443333332110 111 445555555443 4
Q ss_pred CHHHHHH---HHhcCCCCCEEEecCCCCCHHHHHHHHh----cCCccceeeccCCCCCcHHHHHHHH---hcCCCCcEEE
Q 037671 101 TDKGVVQ---LISRASSLQHLNIGGTFITDESLYAIAN----SCPQLKSIVLWSCRQVTGNGLLFLV---NKCGRLESIN 170 (187)
Q Consensus 101 ~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~ 170 (187)
+..++.. ....+++|++|++++|.+++.++..+.. .+++|++|++++| .+++.++..++ ..+++|++|+
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEE
Confidence 4333332 2223445555555555555444333322 3444555555442 34443333332 2234444444
Q ss_pred eeCCCCCHHH
Q 037671 171 VWGTRLPLDC 180 (187)
Q Consensus 171 l~~~~i~~~~ 180 (187)
+++|.+++.+
T Consensus 251 L~~n~i~~~~ 260 (386)
T 2ca6_A 251 LNDCLLSARG 260 (386)
T ss_dssp CTTCCCCHHH
T ss_pred CCCCCCchhh
Confidence 4444444443
No 15
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.48 E-value=8.7e-13 Score=103.29 Aligned_cols=144 Identities=14% Similarity=0.194 Sum_probs=109.2
Q ss_pred ceeeecccccCHHHH---HHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCC----CccEEEecCCCCCCHHHHH
Q 037671 34 KNLSFAGWKMDDDST---ARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCIS----NLTSISLWGLTGITDKGVV 106 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~----~L~~L~l~~~~~~~~~~~~ 106 (187)
+.+++.++.+++... ......+++|++|++++| .+++.+...+.. .++ +|++|++++|. +++.++.
T Consensus 31 ~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n----~l~~~~~~~l~~--~l~~~~~~L~~L~L~~n~-i~~~~~~ 103 (461)
T 1z7x_W 31 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN----ELGDVGVHCVLQ--GLQTPSCKIQKLSLQNCC-LTGAGCG 103 (461)
T ss_dssp SEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC----CCHHHHHHHHHH--TTCSTTCCCCEEECTTSC-CBGGGHH
T ss_pred cEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC----cCChHHHHHHHH--HHhhCCCceeEEEccCCC-CCHHHHH
Confidence 567888888887643 445566799999999865 677777766532 233 79999999886 8876544
Q ss_pred ---HHHhcCCCCCEEEecCCCCCHHHHHHHHhc----CCccceeeccCCCCCcHHHHHHHH---hcCCCCcEEEeeCCCC
Q 037671 107 ---QLISRASSLQHLNIGGTFITDESLYAIANS----CPQLKSIVLWSCRQVTGNGLLFLV---NKCGRLESINVWGTRL 176 (187)
Q Consensus 107 ---~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~i 176 (187)
.....+++|++|+++++.+++.++..++.. .++|++|++++| .+++.++..++ ..+++|++|++++|.+
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 344568899999999999998888777654 456999999986 78877755544 4579999999999999
Q ss_pred CHHHHHhhh
Q 037671 177 PLDCFIGLL 185 (187)
Q Consensus 177 ~~~~~~~L~ 185 (187)
++.+...+.
T Consensus 183 ~~~~~~~l~ 191 (461)
T 1z7x_W 183 NEAGVRVLC 191 (461)
T ss_dssp HHHHHHHHH
T ss_pred chHHHHHHH
Confidence 988876653
No 16
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.36 E-value=1.2e-11 Score=85.78 Aligned_cols=101 Identities=20% Similarity=0.227 Sum_probs=85.9
Q ss_pred ccCCCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEecCCCCCHHHHHHHHhc---CCccceeeccCCCCCcHHHHH
Q 037671 84 KCISNLTSISLWGLTGITDKGVVQLIS---RASSLQHLNIGGTFITDESLYAIANS---CPQLKSIVLWSCRQVTGNGLL 157 (187)
Q Consensus 84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~ 157 (187)
..++.|++|+++++..+++.++..+.. ..++|++|+|+++.++++++..++.. .+.|++|++++| .+++.|+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHH
Confidence 457899999999883499988877665 47899999999999999998777654 478999999984 99999998
Q ss_pred HHHhc---CCCCcEEEe--eCCCCCHHHHHhhh
Q 037671 158 FLVNK---CGRLESINV--WGTRLPLDCFIGLL 185 (187)
Q Consensus 158 ~l~~~---~~~L~~L~l--~~~~i~~~~~~~L~ 185 (187)
.+++. .++|++|++ ++|.++++|...|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 88765 478999999 89999999987765
No 17
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.34 E-value=2.8e-12 Score=97.76 Aligned_cols=93 Identities=18% Similarity=0.164 Sum_probs=44.8
Q ss_pred CCccEEEecCCCCCCHHHHHHHH---hcCC-CCCEEEecCCCCCHHHHHHH---HhcC-CccceeeccCCCCCcHHHHHH
Q 037671 87 SNLTSISLWGLTGITDKGVVQLI---SRAS-SLQHLNIGGTFITDESLYAI---ANSC-PQLKSIVLWSCRQVTGNGLLF 158 (187)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~---~~~~-~L~~L~l~~~~~~~~~~~~l---~~~~-~~L~~L~l~~~~~~~~~~~~~ 158 (187)
++|++|+++++. +++.+...+. ...+ +|++|++++|.+++.+...+ ...+ +.|++|++++| .+++.++..
T Consensus 138 ~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~ 215 (362)
T 3goz_A 138 ASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAE 215 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHH
T ss_pred CceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHH
Confidence 455566665553 4443333222 2233 56666666655543332222 2223 35666666653 555554443
Q ss_pred HHhc----CCCCcEEEeeCCCCCHHHH
Q 037671 159 LVNK----CGRLESINVWGTRLPLDCF 181 (187)
Q Consensus 159 l~~~----~~~L~~L~l~~~~i~~~~~ 181 (187)
++.. .++|++|++++|.+++.+.
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred HHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3321 2466666666666655444
No 18
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.29 E-value=7.1e-11 Score=82.07 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=103.3
Q ss_pred HHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhh-ccCCCccEEEecCCCCCCHHHHHHHH---hcCCCCCEEEe
Q 037671 45 DDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFA-KCISNLTSISLWGLTGITDKGVVQLI---SRASSLQHLNI 120 (187)
Q Consensus 45 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l 120 (187)
+..+..+...-+.|++|+++++ ..+.+.+.+.++.+ .....|+.|+|+++. +++.+...++ +..+.|++|+|
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~n---n~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L 105 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNM---KRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNV 105 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTC---CSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccEEECCCC---CCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEec
Confidence 3456777777889999999853 27899998888654 446789999999886 9988775444 46789999999
Q ss_pred cCCCCCHHHHHHHHhcCC---ccceeeccCC-C-CCcHHHHHHHHh---cCCCCcEEEeeCCCCCHH
Q 037671 121 GGTFITDESLYAIANSCP---QLKSIVLWSC-R-QVTGNGLLFLVN---KCGRLESINVWGTRLPLD 179 (187)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~---~L~~L~l~~~-~-~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~~ 179 (187)
+.|.++++++..++..+. .|++|+++++ + .+++.+...+++ .-++|+.|+++.+.+...
T Consensus 106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~~ 172 (197)
T 1pgv_A 106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEAR 172 (197)
T ss_dssp CSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHHH
T ss_pred CCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccHH
Confidence 999999999999987764 4999999864 3 678888666664 458999999998765543
No 19
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.26 E-value=3.2e-11 Score=91.91 Aligned_cols=137 Identities=18% Similarity=0.116 Sum_probs=96.3
Q ss_pred HHHHHhcCCCCcEEEeeecc-----------------CCcccchhhhhhhhhhccCCCccEEEecCCC-----CCCHHHH
Q 037671 48 TARLVGYAYSLKELEISRSR-----------------WGCQITDNGLYRMSFAKCISNLTSISLWGLT-----GITDKGV 105 (187)
Q Consensus 48 ~~~~~~~~~~L~~L~l~~~~-----------------~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~-----~~~~~~~ 105 (187)
+..+...+|+|++|.++++. ..+.+++.++..++. ..+|+|++|+|+.+. ......+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~-~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILG-SDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHH-SBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHH-ccCCCCcEEEEeccccccccchhHHHH
Confidence 44566667777777776541 012455555555532 247899999885321 0112222
Q ss_pred HHHHh--cCCCCCEEEecCCCCCHHHHHHHHh--cCCccceeeccCCCCCcHHHHHHHHhc---CCCCcEEEeeCCCCCH
Q 037671 106 VQLIS--RASSLQHLNIGGTFITDESLYAIAN--SCPQLKSIVLWSCRQVTGNGLLFLVNK---CGRLESINVWGTRLPL 178 (187)
Q Consensus 106 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~i~~ 178 (187)
..+.. .+|+|+.|++.++.+++++...++. .+|.|++|+++. +.+++.|...++.. +++|+.|++++|.+++
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 22222 4789999999999999887767764 578999999987 58999998888754 6899999999999999
Q ss_pred HHHHhhhc
Q 037671 179 DCFIGLLT 186 (187)
Q Consensus 179 ~~~~~L~~ 186 (187)
+++..|..
T Consensus 322 ~~~~~l~~ 329 (362)
T 2ra8_A 322 EMKKELQK 329 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 20
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=1.5e-11 Score=93.76 Aligned_cols=145 Identities=16% Similarity=0.121 Sum_probs=104.5
Q ss_pred ceeeecccccCHHHH---HHHHhcCC-CCcEEEeeeccCCcccchhhhhhhhhh--ccCCCccEEEecCCCCCCHHHHH-
Q 037671 34 KNLSFAGWKMDDDST---ARLVGYAY-SLKELEISRSRWGCQITDNGLYRMSFA--KCISNLTSISLWGLTGITDKGVV- 106 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~---~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~- 106 (187)
+.+++.++.+++... ...+..++ +|++|++++| .+++.+...++.. ..+++|++|+++++. ++..+..
T Consensus 25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N----~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~ 99 (362)
T 3goz_A 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN----SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDE 99 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS----CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHH
T ss_pred eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC----CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHH
Confidence 567888887765443 34445667 8999999976 7777766655321 224899999999886 6654444
Q ss_pred --HHHhcC-CCCCEEEecCCCCCHHHHHHHHhc----CCccceeeccCCCCCcHHHHHHHHhc---CC-CCcEEEeeCCC
Q 037671 107 --QLISRA-SSLQHLNIGGTFITDESLYAIANS----CPQLKSIVLWSCRQVTGNGLLFLVNK---CG-RLESINVWGTR 175 (187)
Q Consensus 107 --~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~---~~-~L~~L~l~~~~ 175 (187)
.....+ ++|+.|++++|.+++.+...++.. ++.|++|++++| .+++.++..+++. .+ +|++|++++|.
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 334445 899999999988887666555443 468999999985 8888777666543 44 89999999999
Q ss_pred CCHHHHHhh
Q 037671 176 LPLDCFIGL 184 (187)
Q Consensus 176 i~~~~~~~L 184 (187)
+++.+...+
T Consensus 179 l~~~~~~~l 187 (362)
T 3goz_A 179 LASKNCAEL 187 (362)
T ss_dssp GGGSCHHHH
T ss_pred CchhhHHHH
Confidence 987765444
No 21
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.13 E-value=2.9e-11 Score=80.62 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=71.1
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.+++..+......+++|+.|++++| .+++. ..+ ..+++|+.|+++++. ++.. +......++
T Consensus 20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n----~l~~~--~~~---~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~ 88 (149)
T 2je0_A 20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINV----GLTSI--ANL---PKLNKLKKLELSDNR-VSGG-LEVLAEKCP 88 (149)
T ss_dssp SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS----CCCCC--TTC---CCCTTCCEEECCSSC-CCSC-THHHHHHCT
T ss_pred eEEEccCCcCChhHHHHHHhhcCCCcEEECcCC----CCCCc--hhh---hcCCCCCEEECCCCc-ccch-HHHHhhhCC
Confidence 456666665553333334455677777777754 33333 222 335677777777664 4432 333444577
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHH--HHHHhcCCCCcEEEee
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGL--LFLVNKCGRLESINVW 172 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~ 172 (187)
+|+.|++++|.+++-........+++|++|++++| .+++... ......+|+|+.|+++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 77777777776665322222345677777777764 4444332 1334557777777665
No 22
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.12 E-value=1.4e-10 Score=81.05 Aligned_cols=127 Identities=24% Similarity=0.271 Sum_probs=76.1
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.+++- . -...+++|+.|++++| .+++-. .+ ..+++|++|+++++. ++......+ ..++
T Consensus 47 ~~L~l~~n~i~~l--~-~l~~l~~L~~L~l~~n----~~~~~~--~l---~~l~~L~~L~l~~n~-l~~~~~~~l-~~l~ 112 (197)
T 4ezg_A 47 TYITLANINVTDL--T-GIEYAHNIKDLTINNI----HATNYN--PI---SGLSNLERLRIMGKD-VTSDKIPNL-SGLT 112 (197)
T ss_dssp CEEEEESSCCSCC--T-TGGGCTTCSEEEEESC----CCSCCG--GG---TTCTTCCEEEEECTT-CBGGGSCCC-TTCT
T ss_pred cEEeccCCCccCh--H-HHhcCCCCCEEEccCC----CCCcch--hh---hcCCCCCEEEeECCc-cCcccChhh-cCCC
Confidence 4567777666532 2 2556788888888865 332221 22 236777777777664 554333332 2467
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
+|+.|+++++.+++.....+. .+++|++|++++|..+++.. ....+++|++|++++|.+++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCC
T ss_pred CCCEEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcC
Confidence 777777777777665444443 46777777777754344432 13456777777777776654
No 23
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.10 E-value=9.5e-11 Score=81.83 Aligned_cols=126 Identities=14% Similarity=0.171 Sum_probs=84.6
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++... ....+++|+.|++++| .+++.....+ ..+++|+.|+++++. ++......+. .++
T Consensus 69 ~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n----~l~~~~~~~l---~~l~~L~~L~Ls~n~-i~~~~~~~l~-~l~ 136 (197)
T 4ezg_A 69 KDLTINNIHATNYN---PISGLSNLERLRIMGK----DVTSDKIPNL---SGLTSLTLLDISHSA-HDDSILTKIN-TLP 136 (197)
T ss_dssp SEEEEESCCCSCCG---GGTTCTTCCEEEEECT----TCBGGGSCCC---TTCTTCCEEECCSSB-CBGGGHHHHT-TCS
T ss_pred CEEEccCCCCCcch---hhhcCCCCCEEEeECC----ccCcccChhh---cCCCCCCEEEecCCc-cCcHhHHHHh-hCC
Confidence 45666666554321 3456788999999875 5665555444 347889999998875 7765555444 588
Q ss_pred CCCEEEecCCC-CCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 114 SLQHLNIGGTF-ITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 114 ~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
+|+.|++++|. +++- . ....+++|++|++++| .+++.. ....+++|+.|++++|++++
T Consensus 137 ~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFD-GVHDYR---GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTB-CCCCCT---TGGGCSSCCEEEECBC----
T ss_pred CCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCC-CCcChH---HhccCCCCCEEEeeCcccCC
Confidence 99999999976 6653 1 2456888999999885 565533 23568899999999988764
No 24
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=9.6e-12 Score=84.68 Aligned_cols=132 Identities=19% Similarity=0.208 Sum_probs=91.5
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.+++..+...+..+++|+.|++++| .++.. ..+ ..+++|+.|+++++. ++.. +......++
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n----~l~~~--~~~---~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~ 95 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV----GLISV--SNL---PKLPKLKKLELSENR-IFGG-LDMLAEKLP 95 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS----CCCCC--SSC---CCCSSCCEEEEESCC-CCSC-CCHHHHHCT
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC----CCCCh--hhh---ccCCCCCEEECcCCc-CchH-HHHHHhhCC
Confidence 567777777764344444567789999999976 44443 222 347899999999886 5543 334455689
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHH--HHHHhcCCCCcEEEeeCCCCC
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGL--LFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~i~ 177 (187)
+|+.|++++|.+++-........+++|+.|++++| .++.... ......+|+|+.|++++|.+.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999999988876321122345889999999985 5554432 235567999999999998654
No 25
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.09 E-value=3.2e-09 Score=80.89 Aligned_cols=137 Identities=15% Similarity=0.096 Sum_probs=99.8
Q ss_pred ceeeecccccCHHHHHHHHh-cCCCCcEEEeeeccCCcccchhhhhhhh---hhccCCCccEEEecCCCCCCHHHHHHHH
Q 037671 34 KNLSFAGWKMDDDSTARLVG-YAYSLKELEISRSRWGCQITDNGLYRMS---FAKCISNLTSISLWGLTGITDKGVVQLI 109 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~l~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 109 (187)
+.|.+..+.+++..+..+.. .+|+|++|+|+.+.+ ....+.++..++ .+..+|+|+.|.+..|. +++.+...+.
T Consensus 196 ~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~-~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la 273 (362)
T 2ra8_A 196 KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVE-DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFL 273 (362)
T ss_dssp SEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCG-GGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHH
T ss_pred cEEEEecCCCChHHHHHHHHccCCCCcEEEEecccc-ccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHH
Confidence 34555566778887777764 689999999974210 011222222221 12358999999998886 7776666665
Q ss_pred h--cCCCCCEEEecCCCCCHHHHHHHHh---cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCC
Q 037671 110 S--RASSLQHLNIGGTFITDESLYAIAN---SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTR 175 (187)
Q Consensus 110 ~--~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 175 (187)
. .+++|++|+++.+.+++.+...+.. .+++|+.|++++| .+++.++..+.+.+ ..++++++++
T Consensus 274 ~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecCCc
Confidence 4 5789999999999999999888764 4789999999985 89999999998755 4568888775
No 26
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.04 E-value=1.8e-09 Score=74.99 Aligned_cols=101 Identities=13% Similarity=0.201 Sum_probs=83.5
Q ss_pred ccCCCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEecCCCCCHHHHHHHHhc---CCccceeeccCCCCCcHHHHH
Q 037671 84 KCISNLTSISLWGLTGITDKGVVQLIS---RASSLQHLNIGGTFITDESLYAIANS---CPQLKSIVLWSCRQVTGNGLL 157 (187)
Q Consensus 84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~ 157 (187)
...+.|++|+++.+..+++.+...++. ....|+.|+|+++.++|++...++.. -+.|++|+|++ +.+++.|+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCCHHHHH
Confidence 446789999998764599988776665 46789999999999999998877754 46699999988 699999999
Q ss_pred HHHhcC---CCCcEEEeeCC---CCCHHHHHhhh
Q 037671 158 FLVNKC---GRLESINVWGT---RLPLDCFIGLL 185 (187)
Q Consensus 158 ~l~~~~---~~L~~L~l~~~---~i~~~~~~~L~ 185 (187)
.+++.+ +.|++|+|+++ .+++++..+++
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 999876 57999999865 77998877665
No 27
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.03 E-value=2.1e-10 Score=76.40 Aligned_cols=112 Identities=17% Similarity=0.288 Sum_probs=81.0
Q ss_pred CCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 037671 55 AYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIA 134 (187)
Q Consensus 55 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 134 (187)
.++++.|++++| .+++..+... ...+++|+.|+++++. ++.. .....+++|+.|+++++.++.. +....
T Consensus 16 ~~~l~~L~l~~n----~l~~~~~~~~--~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~ 84 (149)
T 2je0_A 16 PSDVKELVLDNS----RSNEGKLEGL--TDEFEELEFLSTINVG-LTSI---ANLPKLNKLKKLELSDNRVSGG-LEVLA 84 (149)
T ss_dssp GGGCSEEECTTC----BCBTTBCCSC--CTTCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEECCSSCCCSC-THHHH
T ss_pred CccCeEEEccCC----cCChhHHHHH--HhhcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEECCCCcccch-HHHHh
Confidence 467999999976 5553222221 1447999999999885 6554 3345689999999999888763 33444
Q ss_pred hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
..+++|++|++++| .+++.........+++|++|++++|.+++
T Consensus 85 ~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 85 EKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp HHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred hhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 56899999999985 67664332334679999999999997764
No 28
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.95 E-value=1.2e-09 Score=81.55 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=8.4
Q ss_pred hcCCCCcEEEeeec
Q 037671 53 GYAYSLKELEISRS 66 (187)
Q Consensus 53 ~~~~~L~~L~l~~~ 66 (187)
..+++|+.|++++|
T Consensus 118 ~~l~~L~~L~Ls~N 131 (312)
T 1wwl_A 118 ATGPDLNILNLRNV 131 (312)
T ss_dssp CCSCCCSEEEEESC
T ss_pred hcCCCccEEEccCC
Confidence 34566666666655
No 29
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.90 E-value=3.1e-10 Score=77.09 Aligned_cols=112 Identities=17% Similarity=0.234 Sum_probs=79.5
Q ss_pred CCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 037671 55 AYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIA 134 (187)
Q Consensus 55 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 134 (187)
.+.++.|++++| .+++..+... ...+++|+.|+++++. ++.. .....+++|+.|++++|.++.. +....
T Consensus 23 ~~~L~~L~l~~n----~l~~~~i~~~--~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~ 91 (168)
T 2ell_A 23 PAAVRELVLDNC----KSNDGKIEGL--TAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGG-LDMLA 91 (168)
T ss_dssp TTSCSEEECCSC----BCBTTBCSSC--CGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHH
T ss_pred cccCCEEECCCC----CCChhhHHHH--HHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchH-HHHHH
Confidence 477999999976 5553222221 1346899999999886 6554 3344689999999999887753 33445
Q ss_pred hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
..+++|+.|++++| .+++.........+++|+.|++++|.++.
T Consensus 92 ~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 92 EKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp HHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred hhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 56999999999996 66653221223568999999999997754
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.88 E-value=4.8e-09 Score=79.11 Aligned_cols=123 Identities=21% Similarity=0.241 Sum_probs=67.5
Q ss_pred eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671 35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS 114 (187)
Q Consensus 35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 114 (187)
.+.+.++.+..... ...+++|+.|++++| .+++... + ..+++|+.|+++++. ++.. .....+++
T Consensus 203 ~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n----~l~~~~~--~---~~l~~L~~L~l~~n~-l~~~---~~~~~l~~ 266 (347)
T 4fmz_A 203 YFTAYVNQITDITP---VANMTRLNSLKIGNN----KITDLSP--L---ANLSQLTWLEIGTNQ-ISDI---NAVKDLTK 266 (347)
T ss_dssp EEECCSSCCCCCGG---GGGCTTCCEEECCSS----CCCCCGG--G---TTCTTCCEEECCSSC-CCCC---GGGTTCTT
T ss_pred eeecccCCCCCCch---hhcCCcCCEEEccCC----ccCCCcc--h---hcCCCCCEEECCCCc-cCCC---hhHhcCCC
Confidence 44555554443221 456677777777755 3333221 1 235667777776664 4332 12334667
Q ss_pred CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
|+.|+++++.+++- .....++.|++|++++| .+++.....+. .+++|+.|++++|.+++
T Consensus 267 L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n-~l~~~~~~~l~-~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 267 LKMLNVGSNQISDI---SVLNNLSQLNSLFLNNN-QLGNEDMEVIG-GLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CCEEECCSSCCCCC---GGGGGCTTCSEEECCSS-CCCGGGHHHHH-TCTTCSEEECCSSSCCC
T ss_pred cCEEEccCCccCCC---hhhcCCCCCCEEECcCC-cCCCcChhHhh-ccccCCEEEccCCcccc
Confidence 77777777655542 12344666777777664 55555444443 46677777777776543
No 31
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.84 E-value=2.9e-09 Score=79.31 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=6.5
Q ss_pred cCCCCcEEEeeec
Q 037671 54 YAYSLKELEISRS 66 (187)
Q Consensus 54 ~~~~L~~L~l~~~ 66 (187)
..++|+.|++++|
T Consensus 115 ~~~~L~~L~Ls~n 127 (310)
T 4glp_A 115 TGLALSSLRLRNV 127 (310)
T ss_dssp CCBCCSSCEEESC
T ss_pred cCCCCCEEEeecc
Confidence 3445555555544
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.81 E-value=1.3e-08 Score=76.67 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=58.2
Q ss_pred eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671 35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS 114 (187)
Q Consensus 35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 114 (187)
.+++.++.++.... ...+++|+.|++++| .+++- ..+ ..+++|+.|+++++. ++.. .....+++
T Consensus 225 ~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n----~l~~~--~~~---~~l~~L~~L~l~~n~-l~~~---~~~~~l~~ 288 (347)
T 4fmz_A 225 SLKIGNNKITDLSP---LANLSQLTWLEIGTN----QISDI--NAV---KDLTKLKMLNVGSNQ-ISDI---SVLNNLSQ 288 (347)
T ss_dssp EEECCSSCCCCCGG---GTTCTTCCEEECCSS----CCCCC--GGG---TTCTTCCEEECCSSC-CCCC---GGGGGCTT
T ss_pred EEEccCCccCCCcc---hhcCCCCCEEECCCC----ccCCC--hhH---hcCCCcCEEEccCCc-cCCC---hhhcCCCC
Confidence 44555554443211 345566666666644 23321 111 234566666666553 3332 12334566
Q ss_pred CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
|+.|+++++.+++.....+. .+++|++|++++| .+++... ...+++|++|++++|.++
T Consensus 289 L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQN-HITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHH-TCTTCSEEECCSS-SCCCCGG---GGGCTTCSEESSSCC---
T ss_pred CCEEECcCCcCCCcChhHhh-ccccCCEEEccCC-ccccccC---hhhhhccceeehhhhccc
Confidence 66666666655544433333 3566666666664 3332221 334566666666666553
No 33
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.81 E-value=1.4e-09 Score=81.03 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=29.0
Q ss_pred CCCCCEEEecCCCCCHH-HHHH--HHhcCCccceeeccCCCCCcH--HHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 112 ASSLQHLNIGGTFITDE-SLYA--IANSCPQLKSIVLWSCRQVTG--NGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 112 ~~~L~~L~l~~~~~~~~-~~~~--l~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
+++|++|++++|.+... ++.. ....+++|++|++++| .++. .....+...+++|++|++++|.++
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCC
Confidence 45555555555544332 1111 0123555556666553 3331 111223344555555555555544
No 34
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.76 E-value=1.4e-08 Score=75.14 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=26.9
Q ss_pred CCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 112 ASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
+++|+.|+++++.+++- .....+++|++|++++| .+++..- ...+++|++|++++|.++
T Consensus 133 l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 133 LPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred CCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCCcCC
Confidence 45555555555444432 11223455555555553 3332221 234555555555555544
No 35
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.76 E-value=4.4e-09 Score=78.46 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=7.9
Q ss_pred CCCCcEEEeeec
Q 037671 55 AYSLKELEISRS 66 (187)
Q Consensus 55 ~~~L~~L~l~~~ 66 (187)
+++|++|++++|
T Consensus 94 l~~L~~L~L~~n 105 (312)
T 1wwl_A 94 ISGLQELTLENL 105 (312)
T ss_dssp TSCCCEEEEEEE
T ss_pred cCCccEEEccCC
Confidence 566777777665
No 36
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.71 E-value=5e-09 Score=71.69 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=88.4
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++. +..+....++|+.|++++| .+++- ..+ ..+++|+.|+++++. ++... ..+...++
T Consensus 22 ~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N----~l~~~--~~l---~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~ 88 (176)
T 1a9n_A 22 RELDLRGYKIPV--IENLGATLDQFDAIDFSDN----EIRKL--DGF---PLLRRLKTLLVNNNR-ICRIG-EGLDQALP 88 (176)
T ss_dssp EEEECTTSCCCS--CCCGGGGTTCCSEEECCSS----CCCEE--CCC---CCCSSCCEEECCSSC-CCEEC-SCHHHHCT
T ss_pred eEEEeeCCCCch--hHHhhhcCCCCCEEECCCC----CCCcc--ccc---ccCCCCCEEECCCCc-ccccC-cchhhcCC
Confidence 457777777663 2344455569999999976 44442 222 347899999999875 65321 12335689
Q ss_pred CCCEEEecCCCCCHHH-HHHHHhcCCccceeeccCCCCCcHHH--HHHHHhcCCCCcEEEeeCCCCCHH
Q 037671 114 SLQHLNIGGTFITDES-LYAIANSCPQLKSIVLWSCRQVTGNG--LLFLVNKCGRLESINVWGTRLPLD 179 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~i~~~ 179 (187)
+|+.|++++|.+++-. +. ....+++|+.|+++++ .++... -..+...+|+|+.|++++|.+.+.
T Consensus 89 ~L~~L~L~~N~i~~~~~~~-~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLD-PLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp TCCEEECCSCCCCCGGGGG-GGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCCEEECCCCcCCcchhhH-hhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 9999999998886522 12 2346899999999985 554322 122456799999999999876543
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.71 E-value=4e-09 Score=80.93 Aligned_cols=131 Identities=9% Similarity=0.053 Sum_probs=85.1
Q ss_pred eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671 35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS 114 (187)
Q Consensus 35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 114 (187)
.+++.++.++.. .....+++|+.|++++| .++......+ ..+++|+.|+++++. ++.. ......+++
T Consensus 230 ~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n----~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~--~~~~~~l~~ 296 (390)
T 3o6n_A 230 ILKLQHNNLTDT---AWLLNYPGLVEVDLSYN----ELEKIMYHPF---VKMQRLERLYISNNR-LVAL--NLYGQPIPT 296 (390)
T ss_dssp EEECCSSCCCCC---GGGGGCTTCSEEECCSS----CCCEEESGGG---TTCSSCCEEECCSSC-CCEE--ECSSSCCTT
T ss_pred EEECCCCCCccc---HHHcCCCCccEEECCCC----cCCCcChhHc---cccccCCEEECCCCc-Cccc--CcccCCCCC
Confidence 345555555443 23456788888888865 4444333333 236888899888775 5432 112235788
Q ss_pred CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHhhh
Q 037671 115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGLL 185 (187)
Q Consensus 115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~L~ 185 (187)
|+.|+++++.++.- ..-...++.|++|++++| .+++.. ...+++|+.|++++|+++.++...++
T Consensus 297 L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~~~~~~~~~~~ 360 (390)
T 3o6n_A 297 LKVLDLSHNHLLHV--ERNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHNDWDCNSLRALF 360 (390)
T ss_dssp CCEEECCSSCCCCC--GGGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred CCEEECCCCcceec--CccccccCcCCEEECCCC-ccceeC----chhhccCCEEEcCCCCccchhHHHHH
Confidence 99999999776521 111234788999999885 555443 35678999999999999888877654
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.70 E-value=2.4e-08 Score=74.40 Aligned_cols=30 Identities=27% Similarity=0.205 Sum_probs=13.9
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeec
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRS 66 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 66 (187)
+.+++.++.+... . -...+++|+.|++++|
T Consensus 44 ~~L~l~~~~i~~l--~-~~~~l~~L~~L~L~~n 73 (308)
T 1h6u_A 44 TTLSAFGTGVTTI--E-GVQYLNNLIGLELKDN 73 (308)
T ss_dssp CEEECTTSCCCCC--T-TGGGCTTCCEEECCSS
T ss_pred CEEEeeCCCccCc--h-hhhccCCCCEEEccCC
Confidence 3445555544321 1 1334555666666544
No 39
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.68 E-value=2.5e-10 Score=84.84 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=6.5
Q ss_pred CCcEEEeeCCCC
Q 037671 165 RLESINVWGTRL 176 (187)
Q Consensus 165 ~L~~L~l~~~~i 176 (187)
+|+.|++++|.+
T Consensus 249 ~L~~L~L~~N~~ 260 (306)
T 2z66_A 249 SLAFLNLTQNDF 260 (306)
T ss_dssp TCCEEECTTCCE
T ss_pred cCCEEEccCCCe
Confidence 555555555544
No 40
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.67 E-value=2.6e-08 Score=80.78 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=37.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR 165 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 165 (187)
+++|+.|+++++. ++.. . -...+++|+.|++++|.+++- .....+++|+.|++++| .+++... ...+++
T Consensus 108 l~~L~~L~Ls~N~-l~~l--~-~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~ 176 (605)
T 1m9s_A 108 LKKLKSLSLEHNG-ISDI--N-GLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTK 176 (605)
T ss_dssp CTTCCEEECTTSC-CCCC--G-GGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSS-CCCCCGG---GTTCTT
T ss_pred CCCCCEEEecCCC-CCCC--c-cccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCC-cCCCchh---hccCCC
Confidence 4555555555443 3221 1 123355555665555544432 12233555666666553 3332211 234555
Q ss_pred CcEEEeeCCCCC
Q 037671 166 LESINVWGTRLP 177 (187)
Q Consensus 166 L~~L~l~~~~i~ 177 (187)
|++|+|++|.++
T Consensus 177 L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 177 LQNLYLSKNHIS 188 (605)
T ss_dssp CCEEECCSSCCC
T ss_pred CCEEECcCCCCC
Confidence 666666655554
No 41
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.65 E-value=6.8e-10 Score=78.88 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=80.0
Q ss_pred eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671 35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS 114 (187)
Q Consensus 35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 114 (187)
.+++.++.++.......+..+++|+.|++++| .++.-....+ ..+++|+.|+++++. ++.... .....+++
T Consensus 36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N----~i~~i~~~~~---~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~ 106 (220)
T 2v70_A 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNN----KITDIEEGAF---EGASGVNEILLTSNR-LENVQH-KMFKGLES 106 (220)
T ss_dssp EEECCSSCCCEECCCCCGGGCTTCCEEECCSS----CCCEECTTTT---TTCTTCCEEECCSSC-CCCCCG-GGGTTCSS
T ss_pred EEEcCCCcCCccCchhhhccCCCCCEEECCCC----cCCEECHHHh---CCCCCCCEEECCCCc-cCccCH-hHhcCCcC
Confidence 45565555543211223456788888888876 3443222222 236889999998775 443221 12345789
Q ss_pred CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
|++|++++|.++...... ...+++|++|+++++ .++...... ...+++|+.|++++|.++
T Consensus 107 L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 107 LKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDN-QITTVAPGA-FDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCEEECTTSCCCCBCTTS-STTCTTCSEEECTTS-CCCCBCTTT-TTTCTTCCEEECCSCCEE
T ss_pred CCEEECCCCcCCeECHhH-cCCCccCCEEECCCC-cCCEECHHH-hcCCCCCCEEEecCcCCc
Confidence 999999987766321111 235788999999884 555432222 346789999999999775
No 42
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.63 E-value=5.7e-08 Score=71.79 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=87.5
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.+... . -...+++|+.|++++| .+++-.. + ..+++|+.|+++++. ++.. .. ...++
T Consensus 49 ~~L~l~~~~i~~~--~-~~~~l~~L~~L~L~~n----~l~~~~~--l---~~l~~L~~L~l~~n~-l~~~--~~-l~~l~ 112 (291)
T 1h6t_A 49 DQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGN----KLTDIKP--L---ANLKNLGWLFLDENK-VKDL--SS-LKDLK 112 (291)
T ss_dssp CEEECTTSCCCCC--T-TGGGCTTCCEEECCSS----CCCCCGG--G---TTCTTCCEEECCSSC-CCCG--GG-GTTCT
T ss_pred cEEEccCCCcccC--h-hHhcCCCCCEEEccCC----ccCCCcc--c---ccCCCCCEEECCCCc-CCCC--hh-hccCC
Confidence 5667777766543 2 2567899999999976 4444322 2 347999999999876 5542 22 45689
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLD 179 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 179 (187)
+|+.|+++++.+++- .. ...+++|+.|++++| .+++. .....+++|++|++++|.+++.
T Consensus 113 ~L~~L~L~~n~i~~~--~~-l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 113 KLKSLSLEHNGISDI--NG-LVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp TCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCCEEECCCCcCCCC--hh-hcCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCCccccc
Confidence 999999999877752 22 345899999999985 55543 2245689999999999988653
No 43
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.63 E-value=4.3e-09 Score=82.18 Aligned_cols=32 Identities=6% Similarity=0.049 Sum_probs=15.9
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeec
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRS 66 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 66 (187)
+.+++.++.++... ...+..+++|+.|++++|
T Consensus 33 ~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n 64 (455)
T 3v47_A 33 NYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQ 64 (455)
T ss_dssp CEEECCSSCCCEEC-TTTTSSCTTCCEEECCCC
T ss_pred CEEEecCCccCcCC-hhHhccCccccEEECcCC
Confidence 34555555544321 112334566666666654
No 44
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.62 E-value=5.5e-08 Score=72.42 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=16.7
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeec
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRS 66 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 66 (187)
+.+++.++.+..... ...+++|+.|++++|
T Consensus 66 ~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 66 IGLELKDNQITDLAP---LKNLTKITELELSGN 95 (308)
T ss_dssp CEEECCSSCCCCCGG---GTTCCSCCEEECCSC
T ss_pred CEEEccCCcCCCChh---HccCCCCCEEEccCC
Confidence 445666655543221 455666777777655
No 45
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.59 E-value=1e-08 Score=74.93 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=6.5
Q ss_pred cCCCCcEEEeeec
Q 037671 54 YAYSLKELEISRS 66 (187)
Q Consensus 54 ~~~~L~~L~l~~~ 66 (187)
.+++|+.|++++|
T Consensus 61 ~l~~L~~L~l~~n 73 (272)
T 3rfs_A 61 YLPNVRYLALGGN 73 (272)
T ss_dssp GCTTCCEEECTTS
T ss_pred cCCCCcEEECCCC
Confidence 3455555555543
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.58 E-value=2.1e-08 Score=78.30 Aligned_cols=11 Identities=9% Similarity=0.175 Sum_probs=8.3
Q ss_pred CCCcEEEeeec
Q 037671 56 YSLKELEISRS 66 (187)
Q Consensus 56 ~~L~~L~l~~~ 66 (187)
+++++|++++|
T Consensus 30 ~~l~~L~Ls~n 40 (455)
T 3v47_A 30 AHVNYVDLSLN 40 (455)
T ss_dssp TTCCEEECCSS
T ss_pred CccCEEEecCC
Confidence 56888888865
No 47
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.58 E-value=4e-09 Score=73.55 Aligned_cols=112 Identities=21% Similarity=0.177 Sum_probs=57.7
Q ss_pred HHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHH
Q 037671 51 LVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESL 130 (187)
Q Consensus 51 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 130 (187)
.+..+++|+.|++++| .++.- ..+ ..+++|+.|+++++. ++. +......+++|+.|++++|.++.-
T Consensus 43 ~~~~l~~L~~L~ls~n----~l~~l--~~~---~~l~~L~~L~l~~n~-l~~--l~~~~~~~~~L~~L~L~~N~l~~l-- 108 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN----NIEKI--SSL---SGMENLRILSLGRNL-IKK--IENLDAVADTLEELWISYNQIASL-- 108 (198)
T ss_dssp HHHHTTTCSEEECSEE----EESCC--CCH---HHHTTCCEEEEEEEE-ECS--CSSHHHHHHHCSEEEEEEEECCCH--
T ss_pred HHhcCCCCCEEECCCC----CCccc--ccc---ccCCCCCEEECCCCC-ccc--ccchhhcCCcCCEEECcCCcCCcC--
Confidence 4455777888888765 33331 111 224667777776553 331 222223345666666666555541
Q ss_pred HHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 131 YAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 131 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
..+ ..+++|++|+++++ .+++.........+++|++|++++|.++.
T Consensus 109 ~~~-~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 109 SGI-EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHH-HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred Ccc-ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 122 23556666666663 44432221222346666666666665543
No 48
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.58 E-value=5.4e-09 Score=73.38 Aligned_cols=131 Identities=12% Similarity=0.098 Sum_probs=80.5
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++.. ....+..+++|+.|++++| .++.-....+ ..+++|++|+++++. ++.... .....++
T Consensus 31 ~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~ 100 (208)
T 2o6s_A 31 TYLDLETNSLKSL-PNGVFDELTSLTQLYLGGN----KLQSLPNGVF---NKLTSLTYLNLSTNQ-LQSLPN-GVFDKLT 100 (208)
T ss_dssp SEEECCSSCCCCC-CTTTTTTCTTCSEEECCSS----CCCCCCTTTT---TTCTTCCEEECCSSC-CCCCCT-TTTTTCT
T ss_pred cEEEcCCCccCcC-ChhhhcccccCcEEECCCC----ccCccChhhc---CCCCCcCEEECCCCc-CCccCH-hHhcCcc
Confidence 4566666655421 1223456788999999876 3442222111 336889999998775 442211 1234578
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
+|+.|+++++.++.... .....+++|++|+++++ .++...- .....+++|++|++++|.++
T Consensus 101 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCCBC
T ss_pred CCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCCCee
Confidence 99999999877663211 12345788999999885 5553321 22346789999999998665
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.58 E-value=5.9e-09 Score=76.28 Aligned_cols=133 Identities=19% Similarity=0.121 Sum_probs=76.9
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++..... .+..+++|+.|++++| .++......+ ..+++|+.|+++++. ++..... ....++
T Consensus 31 ~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n----~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~ 100 (276)
T 2z62_A 31 KNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRC----EIQTIEDGAY---QSLSHLSTLILTGNP-IQSLALG-AFSGLS 100 (276)
T ss_dssp CEEECTTCCCCEECTT-TTTTCTTCSEEECTTC----CCCEECTTTT---TTCTTCCEEECTTCC-CCEECTT-TTTTCT
T ss_pred cEEECCCCcccccCHh-HhccccCCcEEECCCC----cCCccCHHHc---cCCcCCCEEECCCCc-cCccChh-hhcCCc
Confidence 4566666655432211 2345678888888865 3443222222 236788888887775 4433221 123467
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
+|+.|+++++.++...... ...+++|++|+++++ .++...+......+++|++|++++|.++.
T Consensus 101 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred cccEEECCCCCccccCchh-cccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCc
Confidence 8888888876554321111 234677888888774 55442222234467888888888887653
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.57 E-value=1.6e-08 Score=81.83 Aligned_cols=131 Identities=9% Similarity=0.062 Sum_probs=83.8
Q ss_pred eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671 35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS 114 (187)
Q Consensus 35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 114 (187)
.+.+.++.++.. .....+++|+.|++++| .++......+ ..+++|+.|+++++. ++.. ......+++
T Consensus 236 ~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N----~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~l--~~~~~~l~~ 302 (597)
T 3oja_B 236 ILKLQHNNLTDT---AWLLNYPGLVEVDLSYN----ELEKIMYHPF---VKMQRLERLYISNNR-LVAL--NLYGQPIPT 302 (597)
T ss_dssp EEECCSSCCCCC---GGGGGCTTCSEEECCSS----CCCEEESGGG---TTCSSCCEEECTTSC-CCEE--ECSSSCCTT
T ss_pred EEECCCCCCCCC---hhhccCCCCCEEECCCC----ccCCCCHHHh---cCccCCCEEECCCCC-CCCC--CcccccCCC
Confidence 345555555432 33456778888888865 4444433333 236888888888775 4432 122234788
Q ss_pred CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHhhh
Q 037671 115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGLL 185 (187)
Q Consensus 115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~L~ 185 (187)
|+.|++++|.++. +......++.|+.|++++| .++... ...+++|+.|++++|+++.++...++
T Consensus 303 L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~~~~~~~~~~~ 366 (597)
T 3oja_B 303 LKVLDLSHNHLLH--VERNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHNDWDCNSLRALF 366 (597)
T ss_dssp CCEEECCSSCCCC--CGGGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred CcEEECCCCCCCc--cCcccccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCCCCCChhHHHHH
Confidence 9999999877662 1111244788999999885 554433 34678999999999998877765543
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.57 E-value=5.2e-09 Score=76.92 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=31.4
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 111 RASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 111 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
.+++|+.|+++++.++.... .....+++|++|+++++ .++..... ....+++|++|++++|.++.
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 127 GLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGN-RISSVPER-AFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp TCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSCCCE
T ss_pred CCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCC-cccccCHH-HhcCccccCEEECCCCcccc
Confidence 35556666666544432111 11123556666666653 44322211 12345667777777666543
No 52
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.56 E-value=2.7e-09 Score=81.26 Aligned_cols=132 Identities=16% Similarity=0.093 Sum_probs=73.7
Q ss_pred eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671 35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS 114 (187)
Q Consensus 35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 114 (187)
.+++.+++++......+...+++|+.|++++| .++.-....+ ..+++|++|+++++. ++.... .....+++
T Consensus 43 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N----~i~~i~~~~~---~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~ 113 (361)
T 2xot_A 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN----HLNFISSEAF---VPVPNLRYLDLSSNH-LHTLDE-FLFSDLQA 113 (361)
T ss_dssp EEECCSSCCCEECTTSSSSCCTTCCEEECCSS----CCCEECTTTT---TTCTTCCEEECCSSC-CCEECT-TTTTTCTT
T ss_pred EEECCCCCCCccChhhhhhcccccCEEECCCC----cCCccChhhc---cCCCCCCEEECCCCc-CCcCCH-HHhCCCcC
Confidence 45565655543221111125677888888766 3333222222 236788888887765 443211 12235688
Q ss_pred CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHH--hcCCCCcEEEeeCCCCC
Q 037671 115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLV--NKCGRLESINVWGTRLP 177 (187)
Q Consensus 115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~~L~~L~l~~~~i~ 177 (187)
|+.|++++|.++.-.... ...+++|++|+++++ .++......+. ..+++|+.|++++|.++
T Consensus 114 L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNA-FEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCEEECCSSCCCEECTTT-TTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCEEECCCCcccEECHHH-hCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 888888887665321111 234778888888874 55443222111 34788888888888665
No 53
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.55 E-value=1.8e-08 Score=68.84 Aligned_cols=110 Identities=14% Similarity=0.124 Sum_probs=76.1
Q ss_pred CCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 037671 55 AYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIA 134 (187)
Q Consensus 55 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 134 (187)
+++|+.|++++| .++.- ..+ ....++|+.|+++++. ++.- .....+++|+.|++++|.++.-. ..+.
T Consensus 18 ~~~L~~L~l~~n----~l~~i--~~~--~~~~~~L~~L~Ls~N~-l~~~---~~l~~l~~L~~L~Ls~N~l~~~~-~~~~ 84 (176)
T 1a9n_A 18 AVRDRELDLRGY----KIPVI--ENL--GATLDQFDAIDFSDNE-IRKL---DGFPLLRRLKTLLVNNNRICRIG-EGLD 84 (176)
T ss_dssp TTSCEEEECTTS----CCCSC--CCG--GGGTTCCSEEECCSSC-CCEE---CCCCCCSSCCEEECCSSCCCEEC-SCHH
T ss_pred cCCceEEEeeCC----CCchh--HHh--hhcCCCCCEEECCCCC-CCcc---cccccCCCCCEEECCCCcccccC-cchh
Confidence 567999999976 44421 122 2335699999999886 6653 23345889999999998877321 1233
Q ss_pred hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
..++.|+.|+++++ .+++-.-......+++|+.|++++|.++.
T Consensus 85 ~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 85 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence 56899999999985 66543311123468999999999998753
No 54
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.55 E-value=1.8e-08 Score=81.77 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=65.0
Q ss_pred ccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcC
Q 037671 84 KCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKC 163 (187)
Q Consensus 84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 163 (187)
..+++|+.|+++++. ++.. ..+..+++|+.|+|++|.+++... ...++.|++|++++| .+++.. . ...+
T Consensus 128 ~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l~--~-l~~l 196 (605)
T 1m9s_A 128 VHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN-HISDLR--A-LAGL 196 (605)
T ss_dssp GGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSS-CCCBCG--G-GTTC
T ss_pred cCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCC-CCCCCh--H-HccC
Confidence 457999999999886 5543 334568999999999988775322 456899999999986 665532 2 3568
Q ss_pred CCCcEEEeeCCCCCHH
Q 037671 164 GRLESINVWGTRLPLD 179 (187)
Q Consensus 164 ~~L~~L~l~~~~i~~~ 179 (187)
++|+.|++++|.+++.
T Consensus 197 ~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 197 KNLDVLELFSQECLNK 212 (605)
T ss_dssp TTCSEEECCSEEEECC
T ss_pred CCCCEEEccCCcCcCC
Confidence 9999999999977654
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.55 E-value=5.6e-09 Score=78.51 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=33.0
Q ss_pred eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671 35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS 114 (187)
Q Consensus 35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 114 (187)
.+++.++.++ .+..-...+++|+.|++++|. ++ .....+ ..+++|++|+++++. ++ .+......+++
T Consensus 85 ~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~----l~-~lp~~~---~~l~~L~~L~Ls~n~-l~--~lp~~l~~l~~ 151 (328)
T 4fcg_A 85 ALELRSVPLP--QFPDQAFRLSHLQHMTIDAAG----LM-ELPDTM---QQFAGLETLTLARNP-LR--ALPASIASLNR 151 (328)
T ss_dssp EEEEESSCCS--SCCSCGGGGTTCSEEEEESSC----CC-CCCSCG---GGGTTCSEEEEESCC-CC--CCCGGGGGCTT
T ss_pred EEEccCCCch--hcChhhhhCCCCCEEECCCCC----cc-chhHHH---hccCCCCEEECCCCc-cc--cCcHHHhcCcC
Confidence 4555555443 121112335667777776552 22 111111 224556666665553 33 11112233555
Q ss_pred CCEEEecC
Q 037671 115 LQHLNIGG 122 (187)
Q Consensus 115 L~~L~l~~ 122 (187)
|+.|++++
T Consensus 152 L~~L~L~~ 159 (328)
T 4fcg_A 152 LRELSIRA 159 (328)
T ss_dssp CCEEEEEE
T ss_pred CCEEECCC
Confidence 55555555
No 56
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.55 E-value=4.7e-08 Score=71.22 Aligned_cols=120 Identities=16% Similarity=0.214 Sum_probs=58.3
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++... -...+++|+.|++++| .+++-.. + ..+++|+.|+++++. ++.- ..+. . +
T Consensus 44 ~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N----~i~~~~~--l---~~l~~L~~L~L~~N~-l~~l--~~~~-~-~ 106 (263)
T 1xeu_A 44 QNFNGDNSNIQSLA---GMQFFTNLKELHLSHN----QISDLSP--L---KDLTKLEELSVNRNR-LKNL--NGIP-S-A 106 (263)
T ss_dssp SEEECTTSCCCCCT---TGGGCTTCCEEECCSS----CCCCCGG--G---TTCSSCCEEECCSSC-CSCC--TTCC-C-S
T ss_pred cEEECcCCCcccch---HHhhCCCCCEEECCCC----ccCCChh--h---ccCCCCCEEECCCCc-cCCc--Cccc-c-C
Confidence 45666666655322 2456778888888765 3333221 2 235667777776554 3321 0111 1 5
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
+|+.|+++++.+++- .. ...+++|++|+++++ .+++.. ....+++|+.|++++|.++
T Consensus 107 ~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 107 CLSRLFLDNNELRDT--DS-LIHLKNLEILSIRNN-KLKSIV---MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp SCCEEECCSSCCSBS--GG-GTTCTTCCEEECTTS-CCCBCG---GGGGCTTCCEEECTTSCCC
T ss_pred cccEEEccCCccCCC--hh-hcCcccccEEECCCC-cCCCCh---HHccCCCCCEEECCCCcCc
Confidence 555555555544431 11 223555555555553 333321 1233455555555555444
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.55 E-value=1.9e-08 Score=79.90 Aligned_cols=124 Identities=15% Similarity=0.058 Sum_probs=57.3
Q ss_pred eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671 35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS 114 (187)
Q Consensus 35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 114 (187)
.+++.++.++... ...+..+++|+.|++++| .++......+ ..+++|++|+++++. ++. +... .+++
T Consensus 25 ~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~--lp~~--~l~~ 91 (520)
T 2z7x_B 25 ILNISQNYISELW-TSDILSLSKLRILIISHN----RIQYLDISVF---KFNQELEYLDLSHNK-LVK--ISCH--PTVN 91 (520)
T ss_dssp EEECCSSCCCCCC-HHHHTTCTTCCEEECCSS----CCCEEEGGGG---TTCTTCCEEECCSSC-CCE--EECC--CCCC
T ss_pred EEECCCCcccccC-hhhccccccccEEecCCC----ccCCcChHHh---hcccCCCEEecCCCc-eee--cCcc--ccCC
Confidence 3455555443221 122344566666666654 3333222222 224566666666553 332 1111 3566
Q ss_pred CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCC--cEEEeeCCCC
Q 037671 115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRL--ESINVWGTRL 176 (187)
Q Consensus 115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L--~~L~l~~~~i 176 (187)
|++|+++++.++.-.+......+++|++|+++++ .++... ...+++| +.|++++|.+
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~----~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSS----VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCGGG----GGGGTTSCEEEEEEEECTT
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCc-ccchhh----ccccccceeeEEEeecccc
Confidence 6666666655443111111233566666666653 444322 1234455 6666666655
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.53 E-value=2.8e-09 Score=86.13 Aligned_cols=11 Identities=36% Similarity=0.199 Sum_probs=5.2
Q ss_pred CCCCcEEEeee
Q 037671 55 AYSLKELEISR 65 (187)
Q Consensus 55 ~~~L~~L~l~~ 65 (187)
+++|+.|++++
T Consensus 423 l~~L~~L~l~~ 433 (606)
T 3vq2_A 423 LEKLLYLDISY 433 (606)
T ss_dssp CTTCCEEECTT
T ss_pred cccCCEEECcC
Confidence 44455555543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.53 E-value=1.7e-08 Score=74.21 Aligned_cols=87 Identities=15% Similarity=0.112 Sum_probs=46.5
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR 165 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 165 (187)
+++|+.|+++++. ++..... ....+++|+.|+++++.++......+ ..++.|++|+++++ .+++..... ...+++
T Consensus 152 l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~ 226 (285)
T 1ozn_A 152 LGNLTHLFLHGNR-ISSVPER-AFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFAN-NLSALPTEA-LAPLRA 226 (285)
T ss_dssp CTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSS-CCSCCCHHH-HTTCTT
T ss_pred CCCccEEECCCCc-ccccCHH-HhcCccccCEEECCCCcccccCHhHc-cCcccccEeeCCCC-cCCcCCHHH-cccCcc
Confidence 4556666665543 3321111 12235666777776665543221122 23667777777764 555443322 345777
Q ss_pred CcEEEeeCCCCC
Q 037671 166 LESINVWGTRLP 177 (187)
Q Consensus 166 L~~L~l~~~~i~ 177 (187)
|+.|++++|.++
T Consensus 227 L~~L~l~~N~~~ 238 (285)
T 1ozn_A 227 LQYLRLNDNPWV 238 (285)
T ss_dssp CCEEECCSSCEE
T ss_pred cCEEeccCCCcc
Confidence 888888777664
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.52 E-value=2.2e-09 Score=86.03 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=52.7
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR 165 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 165 (187)
+++|+.|+++++. +++..+......+++|+.|++++|.++......+ ..+++|++|++++| .+++.... ....+++
T Consensus 444 l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~ 519 (570)
T 2z63_A 444 LSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMASN-QLKSVPDG-IFDRLTS 519 (570)
T ss_dssp CTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSS-CCSCCCTT-TTTTCTT
T ss_pred CCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCChhhh-hcccCCCEEeCCCC-cCCCCCHH-HhhcccC
Confidence 5677777776664 4322222333456778888888776654322222 34677888888775 44433221 2245778
Q ss_pred CcEEEeeCCCCCH
Q 037671 166 LESINVWGTRLPL 178 (187)
Q Consensus 166 L~~L~l~~~~i~~ 178 (187)
|+.|++++|+++.
T Consensus 520 L~~L~l~~N~~~~ 532 (570)
T 2z63_A 520 LQKIWLHTNPWDC 532 (570)
T ss_dssp CCEEECCSSCBCC
T ss_pred CcEEEecCCcccC
Confidence 8888888886653
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.51 E-value=8.5e-09 Score=75.30 Aligned_cols=14 Identities=7% Similarity=0.119 Sum_probs=7.1
Q ss_pred CCCCcEEEeeCCCC
Q 037671 163 CGRLESINVWGTRL 176 (187)
Q Consensus 163 ~~~L~~L~l~~~~i 176 (187)
+++|+.|++++|++
T Consensus 204 l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 204 LEKLKMLQLQENPW 217 (270)
T ss_dssp CTTCCEEECCSSCB
T ss_pred ccCCCEEEecCCCe
Confidence 44555555555543
No 62
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.50 E-value=1.3e-08 Score=74.51 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=18.0
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeec
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRS 66 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 66 (187)
+.+++.++.++.. .....+++|+.|++++|
T Consensus 66 ~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 66 RYLALGGNKLHDI---SALKELTNLTYLILTGN 95 (272)
T ss_dssp CEEECTTSCCCCC---GGGTTCTTCCEEECTTS
T ss_pred cEEECCCCCCCCc---hhhcCCCCCCEEECCCC
Confidence 4566666665542 13345677888888765
No 63
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.49 E-value=2.4e-08 Score=72.09 Aligned_cols=64 Identities=14% Similarity=0.260 Sum_probs=28.1
Q ss_pred CCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 112 ASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
+++|+.|+++++.++.-.. .....+++|++|+++++ .++.... .....+++|+.|++++|.++.
T Consensus 130 l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 130 LTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTN-QLQSVPH-GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCCBCT
T ss_pred CCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCceeC
Confidence 4455555555544332100 01123455555555553 3332221 112345566666666665543
No 64
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.48 E-value=5.5e-08 Score=70.84 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=87.8
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++.... +..+++|+.|++++| .+++-. .+ .. ++|+.|+++++. ++.. . ....++
T Consensus 66 ~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N----~l~~l~--~~---~~-~~L~~L~L~~N~-l~~~--~-~l~~l~ 128 (263)
T 1xeu_A 66 KELHLSHNQISDLSP---LKDLTKLEELSVNRN----RLKNLN--GI---PS-ACLSRLFLDNNE-LRDT--D-SLIHLK 128 (263)
T ss_dssp CEEECCSSCCCCCGG---GTTCSSCCEEECCSS----CCSCCT--TC---CC-SSCCEEECCSSC-CSBS--G-GGTTCT
T ss_pred CEEECCCCccCCChh---hccCCCCCEEECCCC----ccCCcC--cc---cc-CcccEEEccCCc-cCCC--h-hhcCcc
Confidence 567777777764322 667899999999977 444421 12 12 889999999886 5553 1 245689
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLD 179 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 179 (187)
+|+.|++++|.+++- . ....+++|++|+++++ .+++. .....+++|+.|++++|.++..
T Consensus 129 ~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 129 NLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEEEEEECC
T ss_pred cccEEECCCCcCCCC--h-HHccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeCCCCcccCC
Confidence 999999999888763 2 2455899999999985 66654 2235689999999999977544
No 65
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.48 E-value=2e-07 Score=73.18 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=28.4
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 111 RASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 111 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
.+++|+.|+++++.+++... ...+++|++|++++| .+++.. . ...+++|+.|++++|.++
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNN-KVSDVS--S-LANLTNINWLSAGHNQIS 366 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECcCCcCCCchh---hccCccCCEeECCCC-ccCCch--h-hccCCCCCEEeCCCCccC
Confidence 35555555555554443211 234555555555554 333221 1 234555666666655554
No 66
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.48 E-value=1e-08 Score=74.03 Aligned_cols=131 Identities=14% Similarity=0.146 Sum_probs=86.2
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.+..... ..+..+++|+.|++++| .++......+ ..+++|+.|+++++. ++.... .....++
T Consensus 38 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n----~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~ 107 (251)
T 3m19_A 38 EKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYN----QLQTLSAGVF---DDLTELGTLGLANNQ-LASLPL-GVFDHLT 107 (251)
T ss_dssp CEEECTTSCCCCCCT-TTTTTCTTCCEEECTTS----CCCCCCTTTT---TTCTTCCEEECTTSC-CCCCCT-TTTTTCT
T ss_pred CEEEccCCCcCccCH-hHhcCcccCCEEECCCC----cCCccCHhHh---ccCCcCCEEECCCCc-ccccCh-hHhcccC
Confidence 456777766553221 23446789999999976 4444332222 346899999998875 543221 2234589
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
+|+.|+++++.++.-. ......++.|++|+++++ .++..... ....+++|++|++++|.++
T Consensus 108 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 108 QLDKLYLGGNQLKSLP-SGVFDRLTKLKELRLNTN-QLQSIPAG-AFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCCS
T ss_pred CCCEEEcCCCcCCCcC-hhHhccCCcccEEECcCC-cCCccCHH-HcCcCcCCCEEECCCCcCC
Confidence 9999999998776311 112345889999999985 66543321 2346899999999999775
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.48 E-value=1.4e-07 Score=74.96 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=44.2
Q ss_pred cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCH-HHHHHHHhcCCCCCEEEecCCCCCHHHHHH
Q 037671 54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITD-KGVVQLISRASSLQHLNIGGTFITDESLYA 132 (187)
Q Consensus 54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 132 (187)
.+++|+.|++++| .+++.....+ ..+++|+.|+++++. ++. ..+......+++|+.|++++|.++...-..
T Consensus 322 ~l~~L~~L~Ls~n----~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 322 KISPFLHLDFSNN----LLTDTVFENC---GHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp SCCCCCEEECCSS----CCCTTTTTTC---CCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred hCCcccEEEeECC----ccChhhhhhh---ccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence 4566777777654 4444333222 235677777777665 443 223334445677777777776554311111
Q ss_pred HHhcCCccceeeccC
Q 037671 133 IANSCPQLKSIVLWS 147 (187)
Q Consensus 133 l~~~~~~L~~L~l~~ 147 (187)
....++.|++|++++
T Consensus 394 ~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSS 408 (520)
T ss_dssp SCCCCTTCCEEECCS
T ss_pred hhccCccCCEEECcC
Confidence 122344555555554
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.47 E-value=2.9e-08 Score=74.59 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=13.5
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeec
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRS 66 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 66 (187)
+.+++.++.+. .+...+..+++|+.|++++|
T Consensus 107 ~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n 137 (328)
T 4fcg_A 107 QHMTIDAAGLM--ELPDTMQQFAGLETLTLARN 137 (328)
T ss_dssp SEEEEESSCCC--CCCSCGGGGTTCSEEEEESC
T ss_pred CEEECCCCCcc--chhHHHhccCCCCEEECCCC
Confidence 34455554443 12222234455555555544
No 69
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.46 E-value=2e-08 Score=71.23 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=76.6
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++... ...+..+++|+.|++++| .++......+ ..+++|+.|+++++. ++... ......++
T Consensus 35 ~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N----~i~~~~~~~~---~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~ 104 (220)
T 2v9t_B 35 TEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNN----QISELAPDAF---QGLRSLNSLVLYGNK-ITELP-KSLFEGLF 104 (220)
T ss_dssp CEEECCSSCCCEEC-TTSSTTCTTCCEEECCSS----CCCEECTTTT---TTCSSCCEEECCSSC-CCCCC-TTTTTTCT
T ss_pred CEEECCCCcCCCcC-HhHhhCCCCCCEEECCCC----cCCCcCHHHh---hCCcCCCEEECCCCc-CCccC-HhHccCCC
Confidence 34555555544211 112345677888888866 3443322222 235788888888765 44221 11234578
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
+|+.|++++|.++.-.... ...+++|++|+++++ .++..... ....+++|+.|++++|.+.
T Consensus 105 ~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDA-FQDLHNLNLLSLYDN-KLQTIAKG-TFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCCCCEeCHHH-cCCCCCCCEEECCCC-cCCEECHH-HHhCCCCCCEEEeCCCCcC
Confidence 8888888887665421111 234788889999874 55443322 2345788999999988764
No 70
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.46 E-value=2.4e-08 Score=80.75 Aligned_cols=132 Identities=19% Similarity=0.107 Sum_probs=75.0
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++++++++.-. ..-+..+++|+.|++++| .++.-...++ ..+++|++|+++++. ++.-.. ..+..++
T Consensus 55 ~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N----~i~~i~~~~f---~~L~~L~~L~Ls~N~-l~~l~~-~~f~~L~ 124 (635)
T 4g8a_A 55 KNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRC----EIQTIEDGAY---QSLSHLSTLILTGNP-IQSLAL-GAFSGLS 124 (635)
T ss_dssp CEEECTTSCCCEEC-TTTTTTCTTCCEEECTTC----CCCEECTTTT---TTCTTCCEEECTTCC-CCEECG-GGGTTCT
T ss_pred CEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCC----cCCCcChhHh---cCCCCCCEEEccCCc-CCCCCH-HHhcCCC
Confidence 34555555544211 112345677888888765 3332111111 235778888888764 443211 1234578
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
+|++|+++++.++.-.- .....+++|++|+++++ .++...+......+++|++|++++|.++
T Consensus 125 ~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 125 SLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCcCCCCCh-hhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcccc
Confidence 88888888876553110 11245778888888874 5543333333456788899999888764
No 71
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.46 E-value=2.8e-08 Score=70.47 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=74.9
Q ss_pred CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671 56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN 135 (187)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 135 (187)
+.++.|++++| .++.-....+ ..+++|+.|+++++. ++..... ....+++|+.|++++|.++.- ...+..
T Consensus 32 ~~l~~L~l~~n----~i~~i~~~~~---~~l~~L~~L~Ls~N~-i~~~~~~-~~~~l~~L~~L~Ls~N~l~~l-~~~~f~ 101 (220)
T 2v9t_B 32 ETITEIRLEQN----TIKVIPPGAF---SPYKKLRRIDLSNNQ-ISELAPD-AFQGLRSLNSLVLYGNKITEL-PKSLFE 101 (220)
T ss_dssp TTCCEEECCSS----CCCEECTTSS---TTCTTCCEEECCSSC-CCEECTT-TTTTCSSCCEEECCSSCCCCC-CTTTTT
T ss_pred cCCCEEECCCC----cCCCcCHhHh---hCCCCCCEEECCCCc-CCCcCHH-HhhCCcCCCEEECCCCcCCcc-CHhHcc
Confidence 57999999976 4443222222 336899999999875 5543222 234579999999999877631 112235
Q ss_pred cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
.+++|++|+++++ .++...... ...+++|+.|++++|.++
T Consensus 102 ~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 102 GLFSLQLLLLNAN-KINCLRVDA-FQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCCS
T ss_pred CCCCCCEEECCCC-CCCEeCHHH-cCCCCCCCEEECCCCcCC
Confidence 6889999999985 665443222 346899999999999775
No 72
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.45 E-value=4.5e-08 Score=69.83 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=78.1
Q ss_pred eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671 35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS 114 (187)
Q Consensus 35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 114 (187)
.+++.++.+... ....+..+++|+.|++++| .++.-....+ ..+++|+.|+++++. ++...- .....+++
T Consensus 44 ~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N----~l~~i~~~~~---~~l~~L~~L~Ls~N~-l~~l~~-~~~~~l~~ 113 (229)
T 3e6j_A 44 ILYLHDNQITKL-EPGVFDSLINLKELYLGSN----QLGALPVGVF---DSLTQLTVLDLGTNQ-LTVLPS-AVFDRLVH 113 (229)
T ss_dssp EEECCSSCCCCC-CTTTTTTCTTCCEEECCSS----CCCCCCTTTT---TTCTTCCEEECCSSC-CCCCCT-TTTTTCTT
T ss_pred EEEcCCCccCcc-CHHHhhCccCCcEEECCCC----CCCCcChhhc---ccCCCcCEEECCCCc-CCccCh-hHhCcchh
Confidence 455555555431 1123345677888888876 3322211111 236788888888764 443211 12245788
Q ss_pred CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671 115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLD 179 (187)
Q Consensus 115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 179 (187)
|+.|++++|.++. +..-...+++|++|+++++ .++.... .....+++|+.|++++|.++.+
T Consensus 114 L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 114 LKELFMCCNKLTE--LPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCEEECCSSCCCS--CCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSCBCTT
T ss_pred hCeEeccCCcccc--cCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCCccCC
Confidence 9999998877662 2112256788999999884 5553322 2235678899999999977643
No 73
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.45 E-value=5.5e-08 Score=69.38 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=73.6
Q ss_pred CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671 56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN 135 (187)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 135 (187)
++|+.|++++| .++......+ ..+++|+.|+++++. ++.... .....+++|+.|++++|.++.-. .....
T Consensus 40 ~~L~~L~Ls~n----~i~~~~~~~~---~~l~~L~~L~L~~N~-l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~ 109 (229)
T 3e6j_A 40 TNAQILYLHDN----QITKLEPGVF---DSLINLKELYLGSNQ-LGALPV-GVFDSLTQLTVLDLGTNQLTVLP-SAVFD 109 (229)
T ss_dssp TTCSEEECCSS----CCCCCCTTTT---TTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTT
T ss_pred CCCCEEEcCCC----ccCccCHHHh---hCccCCcEEECCCCC-CCCcCh-hhcccCCCcCEEECCCCcCCccC-hhHhC
Confidence 77999999976 4444322222 336899999998775 533211 12345899999999998776321 12234
Q ss_pred cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
.+++|++|+++++ .++.-. .-...+++|+.|++++|.++
T Consensus 110 ~l~~L~~L~Ls~N-~l~~lp--~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 110 RLVHLKELFMCCN-KLTELP--RGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp TCTTCCEEECCSS-CCCSCC--TTGGGCTTCSEEECCSSCCC
T ss_pred cchhhCeEeccCC-cccccC--cccccCCCCCEEECCCCcCC
Confidence 6889999999985 665221 22357899999999999775
No 74
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.45 E-value=2.7e-08 Score=76.30 Aligned_cols=132 Identities=13% Similarity=0.098 Sum_probs=76.0
Q ss_pred eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671 35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS 114 (187)
Q Consensus 35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 114 (187)
.+.+.++.++... ..++..+++|+.|+++++ .+++.....+ ..+++|++|+++++. ++.... .....+++
T Consensus 49 ~l~l~~~~l~~l~-~~~~~~l~~L~~L~L~~n----~i~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~ 118 (390)
T 3o6n_A 49 IVTFKNSTMRKLP-AALLDSFRQVELLNLNDL----QIEEIDTYAF---AYAHTIQKLYMGFNA-IRYLPP-HVFQNVPL 118 (390)
T ss_dssp EEEEESCEESEEC-THHHHHCCCCSEEECTTS----CCCEECTTTT---TTCTTCCEEECCSSC-CCCCCT-TTTTTCTT
T ss_pred EEEecCCchhhCC-hhHhcccccCcEEECCCC----cccccChhhc---cCCCCcCEEECCCCC-CCcCCH-HHhcCCCC
Confidence 4555555443221 234456788999999865 4444332222 236788888887765 443221 12245778
Q ss_pred CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671 115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLD 179 (187)
Q Consensus 115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 179 (187)
|+.|+++++.++.- ...+...+++|++|+++++ .++..... ....+++|++|++++|.++..
T Consensus 119 L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 119 LTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCBCCTT-TTSSCTTCCEEECCSSCCSBC
T ss_pred CCEEECCCCccCcC-CHHHhcCCCCCcEEECCCC-ccCccChh-hccCCCCCCEEECCCCcCCcc
Confidence 88888888766521 1112245777888888774 44432211 124567788888888876643
No 75
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.45 E-value=2.8e-08 Score=75.27 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=64.8
Q ss_pred eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671 35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS 114 (187)
Q Consensus 35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 114 (187)
.+++.++.++... ...+..+++|+.|++++| .++......+ ..+++|++|+++++. ++.... .....+++
T Consensus 56 ~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n----~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~ 125 (353)
T 2z80_A 56 SLDLSNNRITYIS-NSDLQRCVNLQALVLTSN----GINTIEEDSF---SSLGSLEHLDLSYNY-LSNLSS-SWFKPLSS 125 (353)
T ss_dssp EEECTTSCCCEEC-TTTTTTCTTCCEEECTTS----CCCEECTTTT---TTCTTCCEEECCSSC-CSSCCH-HHHTTCTT
T ss_pred EEECCCCcCcccC-HHHhccCCCCCEEECCCC----ccCccCHhhc---CCCCCCCEEECCCCc-CCcCCH-hHhCCCcc
Confidence 3455555444211 112345667777777754 3333222222 235777777777664 443222 22344677
Q ss_pred CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
|++|+++++.++.-........+++|++|++++|..++...... ...+++|++|++++|.++
T Consensus 126 L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETTCC
T ss_pred CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHH-ccCCCCCCEEECCCCCcC
Confidence 77777777655521000122346677777776653333221111 123455555555555443
No 76
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.44 E-value=4.5e-08 Score=78.60 Aligned_cols=133 Identities=10% Similarity=0.111 Sum_probs=84.1
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++. ++. ...++++.|++++| .++.-....+ ..+++|++|+++++. ++..... ....++
T Consensus 34 ~~l~ls~~~L~~--ip~--~~~~~L~~L~Ls~N----~i~~~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~ 100 (562)
T 3a79_B 34 SMVDYSNRNLTH--VPK--DLPPRTKALSLSQN----SISELRMPDI---SFLSELRVLRLSHNR-IRSLDFH-VFLFNQ 100 (562)
T ss_dssp CEEECTTSCCCS--CCT--TSCTTCCEEECCSS----CCCCCCGGGT---TTCTTCCEEECCSCC-CCEECTT-TTTTCT
T ss_pred cEEEcCCCCCcc--CCC--CCCCCcCEEECCCC----CccccChhhh---ccCCCccEEECCCCC-CCcCCHH-HhCCCC
Confidence 457777776653 111 12378999999976 4443332222 346889999998775 5543222 224578
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHhh
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLDCFIGL 184 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~L 184 (187)
+|++|++++|.++. +... .+++|++|+++++ .++...+......+++|++|++++|.++..++..+
T Consensus 101 ~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l 166 (562)
T 3a79_B 101 DLEYLDVSHNRLQN--ISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166 (562)
T ss_dssp TCCEEECTTSCCCE--ECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGG
T ss_pred CCCEEECCCCcCCc--cCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccccCchhhh
Confidence 89999999977762 2111 5888999999885 55442221223468889999999998876555443
No 77
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.43 E-value=5.2e-07 Score=70.80 Aligned_cols=38 Identities=11% Similarity=0.251 Sum_probs=17.5
Q ss_pred cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
.+++|+.|++++| .+++... ...+++|+.|++++|.++
T Consensus 307 ~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 307 NLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp GCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCccC
Confidence 3455555555543 2322211 234555555555555444
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.41 E-value=7.6e-08 Score=71.87 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=28.8
Q ss_pred CCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 112 ASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
+++|+.|++++|.++.-.. . ...+++|++|+++++ .++.- ......+++|+.|++++|.++
T Consensus 190 l~~L~~L~Ls~N~l~~l~~-~-~~~l~~L~~L~L~~N-~l~~l--~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFMGP-E-FQSAAGVTWISLRNN-KLVLI--EKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTCCEEECCSSCCCEECG-G-GGGGTTCSEEECTTS-CCCEE--CTTCCCCTTCCEEECTTCCCB
T ss_pred cccCCEEECCCCcCCcchh-h-hcccCcccEEECcCC-cccch--hhHhhcCCCCCEEEccCCCcc
Confidence 4455555555544432100 0 223455666666553 33321 111234566777777777666
No 79
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.41 E-value=2.6e-08 Score=80.54 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=7.3
Q ss_pred cCCCCcEEEeeec
Q 037671 54 YAYSLKELEISRS 66 (187)
Q Consensus 54 ~~~~L~~L~l~~~ 66 (187)
.+++|+.|++++|
T Consensus 398 ~l~~L~~L~l~~n 410 (606)
T 3t6q_A 398 ECPQLELLDLAFT 410 (606)
T ss_dssp TCTTCSEEECTTC
T ss_pred CCccCCeEECCCC
Confidence 4455666666544
No 80
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.41 E-value=2.7e-08 Score=80.46 Aligned_cols=133 Identities=15% Similarity=0.059 Sum_probs=80.0
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++... ...+..+++|++|++++| .++.-....+ ..+++|++|+++++. ++..... ....++
T Consensus 35 ~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n----~l~~i~~~~~---~~l~~L~~L~Ls~n~-l~~~~p~-~~~~l~ 104 (606)
T 3vq2_A 35 KNIDLSFNPLKILK-SYSFSNFSELQWLDLSRC----EIETIEDKAW---HGLHHLSNLILTGNP-IQSFSPG-SFSGLT 104 (606)
T ss_dssp CEEECTTSCCCEEC-TTTTTTCTTCCEEECTTC----CCCEECTTTT---TTCTTCCEEECTTCC-CCCCCTT-SSTTCT
T ss_pred CEEECCCCCcCEeC-hhhccCCccCcEEeCCCC----cccccCHHHh---hchhhcCEeECCCCc-ccccChh-hcCCcc
Confidence 45666666554321 113346788888888865 4443322222 346888999998775 4432111 224578
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
+|++|+++++.++.-.... ...+++|++|++++| .++...+......+++|++|++++|.++.
T Consensus 105 ~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFP-IGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred cCCEEEccCCccccccccc-cCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCccee
Confidence 8899998887665321111 345788899999885 44432222234568889999998887753
No 81
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.40 E-value=4.3e-08 Score=76.47 Aligned_cols=65 Identities=20% Similarity=0.202 Sum_probs=33.1
Q ss_pred hcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 037671 53 GYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFIT 126 (187)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 126 (187)
..+++|+.|++++| .++.-....+ ..+++|+.|+++++. ++...- .....+++|+.|++++|.++
T Consensus 85 ~~l~~L~~L~Ls~n----~i~~i~~~~~---~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 85 KHLRHLEILQLSRN----HIRTIEIGAF---NGLANLNTLELFDNR-LTTIPN-GAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp SSCSSCCEEECCSS----CCCEECGGGG---TTCSSCCEEECCSSC-CSSCCT-TTSCSCSSCCEEECCSCCCC
T ss_pred hCCCCCCEEECCCC----cCCccChhhc---cCCccCCEEECCCCc-CCeeCH-hHhhccccCceeeCCCCccc
Confidence 45667777777765 3333222222 235667777776553 332111 11233566666666665544
No 82
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.39 E-value=3.7e-08 Score=78.91 Aligned_cols=133 Identities=19% Similarity=0.122 Sum_probs=79.4
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++.... ..+..+++|++|++++| .++.-....+ ..+++|++|+++++. ++..... ....++
T Consensus 31 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n----~i~~i~~~~~---~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~ 100 (570)
T 2z63_A 31 KNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRC----EIQTIEDGAY---QSLSHLSTLILTGNP-IQSLALG-AFSGLS 100 (570)
T ss_dssp CEEECCSCCCCEECT-TTTTTCSSCCEEECTTC----CCCEECTTTT---TTCTTCCEEECTTCC-CCEECTT-TTTTCT
T ss_pred cEEEccCCccCccCh-hHhhCCCCceEEECCCC----cCCccCcccc---cCchhCCEEeCcCCc-CCccCHh-hhcCcc
Confidence 456666665543211 12346788999999865 4443322222 346889999998775 4432211 224578
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
+|++|+++++.++.-.... ...+++|++|+++++ .++...+......+++|++|++++|.++.
T Consensus 101 ~L~~L~L~~n~l~~l~~~~-~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TCCEEECTTSCCCCSTTCS-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred ccccccccccccccCCCcc-ccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccce
Confidence 8888888886655321111 245788888988875 44432211223468888899888887653
No 83
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.39 E-value=7.6e-08 Score=67.45 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=74.6
Q ss_pred CCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 037671 55 AYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIA 134 (187)
Q Consensus 55 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 134 (187)
.++++.|+++++ .++......+ ..+++|++|+++++. ++... ......+++|++|+++++.++.-. ....
T Consensus 27 ~~~l~~L~l~~n----~l~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~ 96 (208)
T 2o6s_A 27 PAQTTYLDLETN----SLKSLPNGVF---DELTSLTQLYLGGNK-LQSLP-NGVFNKLTSLTYLNLSTNQLQSLP-NGVF 96 (208)
T ss_dssp CTTCSEEECCSS----CCCCCCTTTT---TTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTT
T ss_pred CCCCcEEEcCCC----ccCcCChhhh---cccccCcEEECCCCc-cCccC-hhhcCCCCCcCEEECCCCcCCccC-HhHh
Confidence 457999999976 4443222222 347899999998775 54321 122345899999999998776311 1223
Q ss_pred hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
..+++|++|+++++ .++...- .....+++|++|++++|.++
T Consensus 97 ~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 97 DKLTQLKELALNTN-QLQSLPD-GVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCS
T ss_pred cCccCCCEEEcCCC-cCcccCH-hHhccCCcCCEEECCCCccc
Confidence 46889999999985 5653321 22356899999999999775
No 84
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.39 E-value=4.1e-08 Score=78.39 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=80.5
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++... ...+..+++|+.|++++| .++......+ ..+++|++|+++++. ++......+ ..++
T Consensus 29 ~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n----~i~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~ 98 (549)
T 2z81_A 29 KSLDLSFNKITYIG-HGDLRACANLQVLILKSS----RINTIEGDAF---YSLGSLEHLDLSDNH-LSSLSSSWF-GPLS 98 (549)
T ss_dssp CEEECCSSCCCEEC-SSTTSSCTTCCEEECTTS----CCCEECTTTT---TTCTTCCEEECTTSC-CCSCCHHHH-TTCT
T ss_pred cEEECcCCccCccC-hhhhhcCCcccEEECCCC----CcCccChhhc---cccccCCEEECCCCc-cCccCHHHh-ccCC
Confidence 45666666654321 112356788899998865 4443332222 236889999998775 554333223 4588
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
+|++|+++++.++..........+++|++|++++|..++...... ...+++|++|++++|.++.
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID-FAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETTCCE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhh-hhcccccCeeeccCCcccc
Confidence 899999988776532111223457788888888764343322112 2457788888888876653
No 85
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.39 E-value=7.2e-06 Score=65.38 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=41.2
Q ss_pred hcCCCCCEEEecCCCCCHHHHHHH--HhcCCccceeeccCCCCCcHHH-HHHHHhcCCCCcEEEeeCCCCC
Q 037671 110 SRASSLQHLNIGGTFITDESLYAI--ANSCPQLKSIVLWSCRQVTGNG-LLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 110 ~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
..+++|+.|+++++.+++...... ...++.|++|++++| .++... .......+++|++|++++|.++
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCCCc
Confidence 357778888888777776543321 234677778888775 444322 1233455777777777777654
No 86
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.38 E-value=8.7e-08 Score=65.45 Aligned_cols=112 Identities=15% Similarity=0.105 Sum_probs=74.5
Q ss_pred CCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 037671 55 AYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIA 134 (187)
Q Consensus 55 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 134 (187)
.++++.|++++| .++......+ ..+++|+.|+++++. ++...- .....+++|+.|+++++.++.-. ....
T Consensus 27 ~~~l~~L~l~~n----~l~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~-~~~~ 96 (177)
T 2o6r_A 27 PSSATRLELESN----KLQSLPHGVF---DKLTQLTKLSLSQNQ-IQSLPD-GVFDKLTKLTILYLHENKLQSLP-NGVF 96 (177)
T ss_dssp CTTCSEEECCSS----CCCCCCTTTT---TTCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTT
T ss_pred CCCCcEEEeCCC----cccEeCHHHh---cCcccccEEECCCCc-ceEeCh-hHccCCCccCEEECCCCCccccC-HHHh
Confidence 468999999976 3443222222 336899999998775 543211 12345889999999998776321 1123
Q ss_pred hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
..++.|++|+++++ .++... ......+++|++|++++|.++.
T Consensus 97 ~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 97 DKLTQLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSCBCC
T ss_pred hCCcccCEEECcCC-cceEeC-HHHhcCCcccCEEEecCCCeec
Confidence 45789999999985 665332 2233568999999999998763
No 87
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.37 E-value=4.3e-08 Score=76.68 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=39.5
Q ss_pred hcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHH
Q 037671 53 GYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYA 132 (187)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 132 (187)
..+++|+.|++++| .++......+ ..+++|+.|+++++. ++.... .....+++|+.|++++|.++.-.. .
T Consensus 96 ~~l~~L~~L~Ls~n----~i~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~-~ 165 (452)
T 3zyi_A 96 RHLHHLEVLQLGRN----SIRQIEVGAF---NGLASLNTLELFDNW-LTVIPS-GAFEYLSKLRELWLRNNPIESIPS-Y 165 (452)
T ss_dssp TTCTTCCEEECCSS----CCCEECTTTT---TTCTTCCEEECCSSC-CSBCCT-TTSSSCTTCCEEECCSCCCCEECT-T
T ss_pred CCCCCCCEEECCCC----ccCCcChhhc---cCcccCCEEECCCCc-CCccCh-hhhcccCCCCEEECCCCCcceeCH-h
Confidence 34566777777654 3332222222 225666666666553 332111 112235666666666655442100 1
Q ss_pred HHhcCCccceeeccCCC
Q 037671 133 IANSCPQLKSIVLWSCR 149 (187)
Q Consensus 133 l~~~~~~L~~L~l~~~~ 149 (187)
....+++|++|++++|+
T Consensus 166 ~~~~l~~L~~L~l~~~~ 182 (452)
T 3zyi_A 166 AFNRVPSLMRLDLGELK 182 (452)
T ss_dssp TTTTCTTCCEEECCCCT
T ss_pred HHhcCCcccEEeCCCCC
Confidence 12234445555554433
No 88
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.36 E-value=2.3e-07 Score=70.23 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=26.1
Q ss_pred hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671 135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLD 179 (187)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 179 (187)
..+++|++|+++++ .++.-. ..+...+++|++|++++|+++.+
T Consensus 274 ~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 274 NQISGLLELEFSRN-QLKSVP-DGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCBCCC
T ss_pred hcccCCCEEECCCC-CCCccC-HHHHhcCCCCCEEEeeCCCccCc
Confidence 45677777777774 444222 12224567788888888766543
No 89
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.35 E-value=6.6e-08 Score=78.26 Aligned_cols=116 Identities=12% Similarity=0.096 Sum_probs=68.3
Q ss_pred HHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHH
Q 037671 51 LVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESL 130 (187)
Q Consensus 51 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 130 (187)
++..+++|+.|++++| .++......+ ..+++|+.|+++++. ++.... ..+..+++|+.|+++++.++.- .
T Consensus 70 ~~~~l~~L~~L~L~~n----~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~l-~ 139 (597)
T 3oja_B 70 LLDSFRQVELLNLNDL----QIEEIDTYAF---AYAHTIQKLYMGFNA-IRYLPP-HVFQNVPLLTVLVLERNDLSSL-P 139 (597)
T ss_dssp HHHHCCCCSEEECTTS----CCCEECTTTT---TTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCC-C
T ss_pred HHccCCCCcEEECCCC----CCCCCChHHh---cCCCCCCEEECCCCc-CCCCCH-HHHcCCCCCCEEEeeCCCCCCC-C
Confidence 4556788888888865 4443322222 236778888887765 443221 1224577888888888666521 1
Q ss_pred HHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 131 YAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 131 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
..+...+++|++|++++| .++...... ...+++|+.|++++|.++.
T Consensus 140 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECTTSCCSB
T ss_pred HHHhccCCCCCEEEeeCC-cCCCCChhh-hhcCCcCcEEECcCCCCCC
Confidence 112245677888888775 444322111 2356778888888776654
No 90
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.35 E-value=3.4e-08 Score=79.79 Aligned_cols=131 Identities=16% Similarity=0.081 Sum_probs=70.1
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++... ...+..+++|+.|++++| .++......+ ..+++|++|+++++. ++..... ....++
T Consensus 36 ~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n----~i~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~ 105 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRC----QIYWIHEDTF---QSQHRLDTLVLTANP-LIFMAET-ALSGPK 105 (606)
T ss_dssp CEEECTTCCCSEEC-TTTSTTCTTCSEEECTTC----CCCEECTTTT---TTCTTCCEEECTTCC-CSEECTT-TTSSCT
T ss_pred cEEEccCCccCcCC-hhHhccCccceEEECCCC----ccceeChhhc---cCccccCeeeCCCCc-ccccChh-hhcccc
Confidence 45566666554321 223345677888888765 3443322222 236777777777664 4322111 123467
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
+|++|+++++.++.-.... ...+++|++|++++| .++......+. .+++|++|++++|.++
T Consensus 106 ~L~~L~L~~n~i~~l~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSN-HISSIKLPKGF-PTEKLKVLDFQNNAIH 166 (606)
T ss_dssp TCCEEECTTSCCSCGGGSC-CTTCTTCCEEECCSS-CCCCCCCCTTC-CCTTCCEEECCSSCCC
T ss_pred cccEeeccccCcccCCcch-hccCCcccEEECCCC-cccccCccccc-CCcccCEEEcccCccc
Confidence 7777777776655421111 234667777777764 44432222222 2667777777777654
No 91
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.35 E-value=5e-08 Score=67.95 Aligned_cols=128 Identities=15% Similarity=0.171 Sum_probs=84.4
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++. +. ....+++|+.|++++| .+++-. .. ...+++|+.|+++++. ++. +.. ...++
T Consensus 51 ~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n----~l~~l~-~~---~~~~~~L~~L~L~~N~-l~~--l~~-~~~l~ 115 (198)
T 1ds9_A 51 KHLALSTNNIEK--IS-SLSGMENLRILSLGRN----LIKKIE-NL---DAVADTLEELWISYNQ-IAS--LSG-IEKLV 115 (198)
T ss_dssp SEEECSEEEESC--CC-CHHHHTTCCEEEEEEE----EECSCS-SH---HHHHHHCSEEEEEEEE-CCC--HHH-HHHHH
T ss_pred CEEECCCCCCcc--cc-ccccCCCCCEEECCCC----Cccccc-ch---hhcCCcCCEEECcCCc-CCc--CCc-cccCC
Confidence 456666666554 22 3456789999999987 444211 11 1225789999999875 655 233 34579
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHH---------HHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGN---------GLLFLVNKCGRLESINVWGTRLPLD 179 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~---------~~~~l~~~~~~L~~L~l~~~~i~~~ 179 (187)
+|+.|++++|.+++-........+++|++|+++++ .++.. ....+...+|+|+.|| ++.++++
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 99999999988886332223446899999999985 44332 1233456799999998 6666543
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.34 E-value=9.7e-08 Score=69.66 Aligned_cols=131 Identities=14% Similarity=0.128 Sum_probs=83.6
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++.. ....+..+++|+.|++++| .++.-....+ ..+++|++|+++++. ++.... .....++
T Consensus 64 ~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~ 133 (270)
T 2o6q_A 64 RLLYLNDNKLQTL-PAGIFKELKNLETLWVTDN----KLQALPIGVF---DQLVNLAELRLDRNQ-LKSLPP-RVFDSLT 133 (270)
T ss_dssp CEEECCSSCCSCC-CTTTTSSCTTCCEEECCSS----CCCCCCTTTT---TTCSSCCEEECCSSC-CCCCCT-TTTTTCT
T ss_pred CEEECCCCccCee-ChhhhcCCCCCCEEECCCC----cCCcCCHhHc---ccccCCCEEECCCCc-cCeeCH-HHhCcCc
Confidence 4455555554421 1223456789999999976 4443322222 346899999998775 443221 1224589
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
+|+.|+++++.++.-.. .....++.|++|+++++ .++...... ...+++|++|++++|.++
T Consensus 134 ~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 134 KLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNN-QLKRVPEGA-FDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp TCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCCS
T ss_pred CCCEEECCCCcCCccCH-hHccCCcccceeEecCC-cCcEeChhH-hccCCCcCEEECCCCcCC
Confidence 99999999987663211 12345889999999985 555433222 346899999999999775
No 93
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.34 E-value=9.7e-08 Score=71.31 Aligned_cols=110 Identities=20% Similarity=0.183 Sum_probs=74.8
Q ss_pred cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHH
Q 037671 54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAI 133 (187)
Q Consensus 54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 133 (187)
.+++|+.|++++| .++......+ ..+++|+.|+++++. ++......+...+++|+.|+++++.++.. ...
T Consensus 118 ~~~~L~~L~l~~N----~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~ 187 (317)
T 3o53_A 118 RGQGKKNIYLANN----KITMLRDLDE---GCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQ 187 (317)
T ss_dssp CCSSCEEEECCSS----CCCSGGGBCT---GGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECC
T ss_pred ccCCCCEEECCCC----CCCCccchhh---hccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCccc--ccc
Confidence 3577999999876 4444322222 235889999998875 66655555555678999999999877643 111
Q ss_pred HhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 134 ANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 134 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
..+++|++|++++| .++..... ...+++|+.|++++|.++
T Consensus 188 -~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 188 -VVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp -CCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSCCC
T ss_pred -cccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCCccc
Confidence 23788999999885 55543222 346789999999999776
No 94
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.33 E-value=2e-08 Score=74.47 Aligned_cols=134 Identities=13% Similarity=0.071 Sum_probs=87.3
Q ss_pred eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671 35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS 114 (187)
Q Consensus 35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 114 (187)
.+++.++.++..........+++|+.|++++| .++......+ ..+++|+.|+++++. ++..........+++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT----HTRVAFNGIF---NGLSSLEVLKMAGNS-FQENFLPDIFTELRN 176 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTS----CCEECSTTTT---TTCTTCCEEECTTCE-EGGGEECSCCTTCTT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCC----cCCccchhhc---ccCcCCCEEECCCCc-cccccchhHHhhCcC
Confidence 44555554433222224456789999999976 4443332222 346899999999875 554323333456899
Q ss_pred CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671 115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLD 179 (187)
Q Consensus 115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 179 (187)
|+.|+++++.++...... ...+++|++|+++++ .+++..... ...+++|+.|++++|.++..
T Consensus 177 L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CCEEECTTSCCCEECTTT-TTTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTSCCCBC
T ss_pred CCEEECCCCCcCCcCHHH-hcCCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCCCCccc
Confidence 999999998776532222 245789999999985 554433222 35689999999999988654
No 95
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.31 E-value=1.8e-07 Score=73.95 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=9.9
Q ss_pred cCCCCcEEEeeCCCCCH
Q 037671 162 KCGRLESINVWGTRLPL 178 (187)
Q Consensus 162 ~~~~L~~L~l~~~~i~~ 178 (187)
.+++|+.|++++|.++.
T Consensus 235 ~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp CCTTCCEEECTTCCBCH
T ss_pred cCCCCCEEEcCCCCCcC
Confidence 34566666666666653
No 96
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.31 E-value=1.3e-07 Score=70.80 Aligned_cols=64 Identities=9% Similarity=0.066 Sum_probs=36.4
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 111 RASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 111 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
.+++|+.|+++++.++...... ...++.|++|++++| .++.- ......+++|++|++++|.++.
T Consensus 214 ~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~l--p~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 214 GLNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNN-KLVKV--PGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TCTTCCEEECCSSCCCEECTTT-GGGSTTCCEEECCSS-CCSSC--CTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCCCEEECCCCcCceeChhh-ccCCCCCCEEECCCC-cCccC--ChhhccCCCcCEEECCCCcCCc
Confidence 4567777777776555321111 234667777777764 44311 1112356777888887776654
No 97
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.30 E-value=3.1e-08 Score=83.23 Aligned_cols=135 Identities=17% Similarity=0.063 Sum_probs=77.6
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.++++++.++... ..-+..+++|+.|++++|.....+....+ ..+++|+.|+++++. ++.... .....++
T Consensus 27 ~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~~~~~i~~~~f------~~L~~L~~L~Ls~N~-l~~~~p-~~~~~l~ 97 (844)
T 3j0a_A 27 ERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPLTIDKEAF------RNLPNLRILDLGSSK-IYFLHP-DAFQGLF 97 (844)
T ss_dssp CEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTCCCCEECTTTT------SSCTTCCEEECTTCC-CCEECT-TSSCSCS
T ss_pred CEEECCCCcCCccC-hhHCcccccCeEEeCCCCCCccccCHHHh------cCCCCCCEEECCCCc-CcccCH-hHccCCc
Confidence 45666666554321 11234567788888886521112222222 336788888888775 443221 1223578
Q ss_pred CCCEEEecCCCCCHHHHHH-HHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 114 SLQHLNIGGTFITDESLYA-IANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
+|++|++++|.+++..... ....+++|++|++++| .++..........+++|++|++++|.++.
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCe
Confidence 8888888887766432211 1245778888888875 44433322234567888888888886653
No 98
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.30 E-value=2.2e-07 Score=50.52 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=26.3
Q ss_pred CccccccchhHHHHHHHhhHHHHHHh-hhhhccc
Q 037671 1 FLFVFVIPFVCLLRVSSVCKKWKLGV-KQSLARR 33 (187)
Q Consensus 1 ~I~~~l~~~~~~~~~~~vck~w~~~~-~~~l~~~ 33 (187)
+||+||+ .+++.++++|||+|++++ .+.+|+.
T Consensus 19 ~I~~~L~-~~dl~~~~~Vck~w~~~~~~~~lW~~ 51 (53)
T 1fs1_A 19 GIFSCLC-LPELLKVSGVCKRWYRLASDESLWQT 51 (53)
T ss_dssp HHHTTSC-GGGHHHHHTTCHHHHHHHTCGGGC--
T ss_pred HHHHcCC-HHHHHHHHHHHHHHHHHhCChHHHHh
Confidence 4899999 599999999999999977 5567754
No 99
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.29 E-value=1e-07 Score=76.98 Aligned_cols=110 Identities=19% Similarity=0.204 Sum_probs=74.0
Q ss_pred CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671 56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN 135 (187)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 135 (187)
+.+++|+|++| .++.-....+ ..+++|+.|+++++. ++...-. .+..+++|++|+|++|.++.-.. ....
T Consensus 52 ~~~~~LdLs~N----~i~~l~~~~f---~~l~~L~~L~Ls~N~-i~~i~~~-~f~~L~~L~~L~Ls~N~l~~l~~-~~f~ 121 (635)
T 4g8a_A 52 FSTKNLDLSFN----PLRHLGSYSF---FSFPELQVLDLSRCE-IQTIEDG-AYQSLSHLSTLILTGNPIQSLAL-GAFS 121 (635)
T ss_dssp TTCCEEECTTS----CCCEECTTTT---TTCTTCCEEECTTCC-CCEECTT-TTTTCTTCCEEECTTCCCCEECG-GGGT
T ss_pred cCCCEEEeeCC----CCCCCCHHHH---hCCCCCCEEECCCCc-CCCcChh-HhcCCCCCCEEEccCCcCCCCCH-HHhc
Confidence 36999999987 4443222222 347899999999885 5432111 23458999999999987763211 1235
Q ss_pred cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
.+++|++|++++| .++...- .....+++|++|++++|.++
T Consensus 122 ~L~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 122 GLSSLQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp TCTTCCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCC-cCCCCCh-hhhhcCcccCeeccccCccc
Confidence 6899999999986 5543221 11356899999999999775
No 100
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.29 E-value=1.1e-07 Score=69.52 Aligned_cols=111 Identities=19% Similarity=0.172 Sum_probs=75.5
Q ss_pred CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671 56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN 135 (187)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 135 (187)
+.++.|++++| .++......+ ..+++|+.|+++++. ++..... ....+++|++|+++++.++...... ..
T Consensus 28 ~~l~~L~ls~n----~l~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~-~~ 97 (276)
T 2z62_A 28 FSTKNLDLSFN----PLRHLGSYSF---FSFPELQVLDLSRCE-IQTIEDG-AYQSLSHLSTLILTGNPIQSLALGA-FS 97 (276)
T ss_dssp TTCCEEECTTC----CCCEECTTTT---TTCTTCSEEECTTCC-CCEECTT-TTTTCTTCCEEECTTCCCCEECTTT-TT
T ss_pred CCccEEECCCC----cccccCHhHh---ccccCCcEEECCCCc-CCccCHH-HccCCcCCCEEECCCCccCccChhh-hc
Confidence 46999999976 4554433333 347899999999885 5543221 2245899999999998776432222 24
Q ss_pred cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
.+++|++|+++++ .++...-.. ...+++|++|++++|.++.
T Consensus 98 ~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 98 GLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp TCTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSSCCCC
T ss_pred CCccccEEECCCC-CccccCchh-cccCCCCCEEECcCCccce
Confidence 5889999999885 444322111 3468999999999998764
No 101
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.29 E-value=2.4e-07 Score=72.81 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=17.0
Q ss_pred CCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC
Q 037671 137 CPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL 176 (187)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i 176 (187)
++.|++|++++| .++...... ...+++|+.|++++|.+
T Consensus 151 l~~L~~L~l~~n-~l~~~~~~~-l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 151 LNSLEQLTLEKC-NLTSIPTEA-LSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp CTTCCEEEEESC-CCSSCCHHH-HTTCTTCCEEEEESCCC
T ss_pred CCCCCEEECCCC-cCcccChhH-hcccCCCcEEeCCCCcC
Confidence 455555555553 333222111 23355555555555544
No 102
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.29 E-value=7.2e-08 Score=75.80 Aligned_cols=132 Identities=15% Similarity=0.090 Sum_probs=81.8
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++... ...+..+++|+.|++++| .++......+ ..+++|+.|+++++. ++.... .....++
T Consensus 35 ~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n----~i~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~ 104 (477)
T 2id5_A 35 RLLDLGKNRIKTLN-QDEFASFPHLEELELNEN----IVSAVEPGAF---NNLFNLRTLGLRSNR-LKLIPL-GVFTGLS 104 (477)
T ss_dssp SEEECCSSCCCEEC-TTTTTTCTTCCEEECTTS----CCCEECTTTT---TTCTTCCEEECCSSC-CCSCCT-TSSTTCT
T ss_pred cEEECCCCccceEC-HhHccCCCCCCEEECCCC----ccCEeChhhh---hCCccCCEEECCCCc-CCccCc-ccccCCC
Confidence 45666666554321 123346788899998865 4444333333 346889999998764 443221 1224578
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
+|+.|+++++.++..... ....+++|++|+++++ .++...... ...+++|++|++++|.++.
T Consensus 105 ~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 105 NLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDN-DLVYISHRA-FSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp TCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCT-TCCEECTTS-STTCTTCCEEEEESCCCSS
T ss_pred CCCEEECCCCccccCChh-HccccccCCEEECCCC-ccceeChhh-ccCCCCCCEEECCCCcCcc
Confidence 999999998776532111 2245788999999884 554433222 2468899999999997653
No 103
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.27 E-value=1.1e-07 Score=79.12 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=23.2
Q ss_pred cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
.+++|++|++++| .++... .. ...+++|++|++++|.++.
T Consensus 198 ~l~~L~~L~Ls~n-~l~~~~-~~-l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 198 RCVNLEFLDVSSN-NFSTGI-PF-LGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp TCTTCCEEECCSS-CCCSCC-CB-CTTCCSCCEEECCSSCCCS
T ss_pred cCCcCCEEECcCC-cCCCCC-cc-cccCCCCCEEECcCCcCCC
Confidence 4566666666664 332211 11 3456778888888887763
No 104
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.26 E-value=4.1e-07 Score=68.14 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=18.7
Q ss_pred hcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCC
Q 037671 53 GYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGL 97 (187)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~ 97 (187)
..+++|+.|++++| .++......+ ..+++|++|+++++
T Consensus 73 ~~l~~L~~L~L~~n----~l~~~~~~~~---~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 73 KNLKNLHTLILINN----KISKISPGAF---APLVKLERLYLSKN 110 (330)
T ss_dssp TTCTTCCEEECCSS----CCCCBCTTTT---TTCTTCCEEECCSS
T ss_pred ccCCCCCEEECCCC----cCCeeCHHHh---cCCCCCCEEECCCC
Confidence 34566777777654 3332222222 22455666666554
No 105
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.25 E-value=1.1e-07 Score=74.41 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=19.3
Q ss_pred CCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 137 CPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
+++|++|+++++ .++...... ...+++|+.|++++|.++
T Consensus 241 l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 241 LSSLKKLWVMNS-QVSLIERNA-FDGLASLVELNLAHNNLS 279 (452)
T ss_dssp CTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCS
T ss_pred ccCCCEEEeCCC-cCceECHHH-hcCCCCCCEEECCCCcCC
Confidence 455555555543 333222111 234566777777766554
No 106
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.25 E-value=3.6e-07 Score=73.34 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=32.8
Q ss_pred cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHH-HHHHHHhcCCCCCEEEecCCCCC
Q 037671 54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDK-GVVQLISRASSLQHLNIGGTFIT 126 (187)
Q Consensus 54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 126 (187)
.+++|+.|++++| .+++.....+ ..+++|+.|+++++. ++.- .+......+++|+.|++++|.++
T Consensus 351 ~l~~L~~L~l~~n----~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 351 SPSSFTFLNFTQN----VFTDSVFQGC---STLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp SCCCCCEEECCSS----CCCTTTTTTC---CSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred CCCCceEEECCCC----ccccchhhhh---cccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 4456777777654 3443222222 235667777776654 4331 22222334566666666665443
No 107
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.24 E-value=3.1e-07 Score=76.44 Aligned_cols=62 Identities=13% Similarity=0.278 Sum_probs=32.8
Q ss_pred CCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 112 ASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
+++|++|+++++.++... .. ...+++|++|++++| .++...... ...+++|++|++++|.++
T Consensus 199 l~~L~~L~Ls~n~l~~~~-~~-l~~l~~L~~L~Ls~n-~l~~~~~~~-l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGI-PF-LGDCSALQHLDISGN-KLSGDFSRA-ISTCTELKLLNISSNQFV 260 (768)
T ss_dssp CTTCCEEECCSSCCCSCC-CB-CTTCCSCCEEECCSS-CCCSCHHHH-TTTCSSCCEEECCSSCCE
T ss_pred CCcCCEEECcCCcCCCCC-cc-cccCCCCCEEECcCC-cCCCcccHH-HhcCCCCCEEECCCCccc
Confidence 445555555554443211 01 234666777777764 444333222 345677777777777553
No 108
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.23 E-value=4.8e-08 Score=72.90 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=68.6
Q ss_pred ceeeecccccCHH-HHHHHHhcCCCCcEEEeee-ccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhc
Q 037671 34 KNLSFAGWKMDDD-STARLVGYAYSLKELEISR-SRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISR 111 (187)
Q Consensus 34 ~~l~~~~~~l~~~-~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 111 (187)
+.+++.++.+... .+...+..+++|+.|++++ + .++......+ ..+++|++|+++++. ++.... .....
T Consensus 53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n----~l~~~~p~~l---~~l~~L~~L~Ls~n~-l~~~~p-~~~~~ 123 (313)
T 1ogq_A 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN----NLVGPIPPAI---AKLTQLHYLYITHTN-VSGAIP-DFLSQ 123 (313)
T ss_dssp EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET----TEESCCCGGG---GGCTTCSEEEEEEEC-CEEECC-GGGGG
T ss_pred EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC----cccccCChhH---hcCCCCCEEECcCCe-eCCcCC-HHHhC
Confidence 3456666555420 1223445678888888884 4 3333222222 235777888777654 432111 12234
Q ss_pred CCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCC-CCcEEEeeCCCCC
Q 037671 112 ASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCG-RLESINVWGTRLP 177 (187)
Q Consensus 112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~i~ 177 (187)
+++|++|+++++.++...... ...+++|++|+++++ .++......+. .++ +|++|++++|.++
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N-~l~~~~p~~l~-~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGN-RISGAIPDSYG-SFSKLFTSMTISRNRLT 187 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSS-CCEEECCGGGG-CCCTTCCEEECCSSEEE
T ss_pred CCCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCC-cccCcCCHHHh-hhhhcCcEEECcCCeee
Confidence 677777777776554211111 234677777777764 44422212222 343 6777777766543
No 109
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.23 E-value=2.4e-07 Score=64.32 Aligned_cols=109 Identities=16% Similarity=0.048 Sum_probs=71.9
Q ss_pred CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671 56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN 135 (187)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 135 (187)
++++.|++++| .++.-. ..+ ..+++|+.|+++++. ++..... ....+++|+.|++++|.++.-.... ..
T Consensus 31 ~~l~~L~L~~n----~i~~ip-~~~---~~l~~L~~L~Ls~N~-i~~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~-f~ 99 (193)
T 2wfh_A 31 RDVTELYLDGN----QFTLVP-KEL---SNYKHLTLIDLSNNR-ISTLSNQ-SFSNMTQLLTLILSYNRLRCIPPRT-FD 99 (193)
T ss_dssp TTCCEEECCSS----CCCSCC-GGG---GGCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTT-TT
T ss_pred CCCCEEECCCC----cCchhH-HHh---hcccCCCEEECCCCc-CCEeCHh-HccCCCCCCEEECCCCccCEeCHHH-hC
Confidence 57999999977 333211 122 346889999998775 5442221 2245789999999997766421111 24
Q ss_pred cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
.+++|+.|+++++ .++.... .....+++|+.|++++|.+.
T Consensus 100 ~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 100 GLKSLRLLSLHGN-DISVVPE-GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCC-CCCeeCh-hhhhcCccccEEEeCCCCee
Confidence 5788999999884 5553321 22346789999999999764
No 110
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=6.5e-07 Score=75.44 Aligned_cols=111 Identities=13% Similarity=0.075 Sum_probs=50.1
Q ss_pred cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCH-H---HHHHHH---hcCCCCCEEEecCCCCC
Q 037671 54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITD-K---GVVQLI---SRASSLQHLNIGGTFIT 126 (187)
Q Consensus 54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~-~---~~~~~~---~~~~~L~~L~l~~~~~~ 126 (187)
.+++|+.|++++| .+.......+ ..+++|+.|+++++..++. . .+..+. ..+++|+.|+++++.++
T Consensus 489 ~L~~L~~L~Ls~N----~l~~~iP~~l---~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 489 NLKDLTDVELYNC----PNMTQLPDFL---YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp GCTTCCEEEEESC----TTCCSCCGGG---GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred cCCCCCEEECcCC----CCCccChHHH---hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 4566666666654 2222211222 2246666666665532333 1 111111 12346666666665554
Q ss_pred HHHHHH--HHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 127 DESLYA--IANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 127 ~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
.+.. ....+++|++|+++++ .++ .+. ....+++|+.|++++|.++
T Consensus 562 --~ip~~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 562 --EFPASASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp --BCCCHHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSSCCS
T ss_pred --ccCChhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCCccc
Confidence 1211 2234556666666553 333 111 1223455555555555443
No 111
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.22 E-value=1.1e-07 Score=70.25 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=14.6
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeec
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRS 66 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 66 (187)
+.+++.++.++.... ...+++|+.|++++|
T Consensus 58 ~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 58 TQLNLDRAELTKLQV---DGTLPVLGTLDLSHN 87 (290)
T ss_dssp CEEECTTSCCCEEEC---CSCCTTCCEEECCSS
T ss_pred CEEECCCCccCcccC---CCCCCcCCEEECCCC
Confidence 345555554432111 134566666666655
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.22 E-value=4.9e-07 Score=72.83 Aligned_cols=105 Identities=14% Similarity=0.232 Sum_probs=69.8
Q ss_pred CCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhc
Q 037671 57 SLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANS 136 (187)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 136 (187)
.|+.|++++| .++.- ..+ ..+++|+.|+++++. ++ .+......+++|+.|++++|.++. +. -...
T Consensus 442 ~L~~L~Ls~n----~l~~l--p~~---~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~ 506 (567)
T 1dce_A 442 DVRVLHLAHK----DLTVL--CHL---EQLLLVTHLDLSHNR-LR--ALPPALAALRCLEVLQASDNALEN--VD-GVAN 506 (567)
T ss_dssp TCSEEECTTS----CCSSC--CCG---GGGTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTT
T ss_pred CceEEEecCC----CCCCC--cCc---cccccCcEeecCccc-cc--ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCC
Confidence 5888999876 33321 112 236789999998775 55 222234568899999999987764 22 2345
Q ss_pred CCccceeeccCCCCCcHHH-HHHHHhcCCCCcEEEeeCCCCCH
Q 037671 137 CPQLKSIVLWSCRQVTGNG-LLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
+++|++|+++++ .++... ... ...+++|+.|++++|.++.
T Consensus 507 l~~L~~L~Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 507 LPRLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CSSCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTSGGGG
T ss_pred CCCCcEEECCCC-CCCCCCCcHH-HhcCCCCCEEEecCCcCCC
Confidence 888999999885 555432 222 3468899999999987653
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.21 E-value=2.4e-07 Score=65.64 Aligned_cols=129 Identities=14% Similarity=0.134 Sum_probs=81.7
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhh-hhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGL-YRMSFAKCISNLTSISLWGLTGITDKGVVQLISRA 112 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 112 (187)
..++..+..++. +.. ...+.++.|++++| .++.... ..+ ..+++|+.|+++++. ++...-. ....+
T Consensus 14 ~~l~~s~n~l~~--iP~--~~~~~~~~L~L~~N----~l~~~~~~~~~---~~l~~L~~L~L~~N~-i~~i~~~-~~~~l 80 (220)
T 2v70_A 14 TTVDCSNQKLNK--IPE--HIPQYTAELRLNNN----EFTVLEATGIF---KKLPQLRKINFSNNK-ITDIEEG-AFEGA 80 (220)
T ss_dssp TEEECCSSCCSS--CCS--CCCTTCSEEECCSS----CCCEECCCCCG---GGCTTCCEEECCSSC-CCEECTT-TTTTC
T ss_pred CEeEeCCCCccc--Ccc--CCCCCCCEEEcCCC----cCCccCchhhh---ccCCCCCEEECCCCc-CCEECHH-HhCCC
Confidence 356666665543 110 12345889999987 3433211 111 347899999998775 5543221 23458
Q ss_pred CCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 113 SSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 113 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
++|+.|+++++.++.-.. .....++.|++|+++++ .++...-.. ...+++|+.|++++|.++.
T Consensus 81 ~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~ 143 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQH-KMFKGLESLKTLMLRSN-RITCVGNDS-FIGLSSVRLLSLYDNQITT 143 (220)
T ss_dssp TTCCEEECCSSCCCCCCG-GGGTTCSSCCEEECTTS-CCCCBCTTS-STTCTTCSEEECTTSCCCC
T ss_pred CCCCEEECCCCccCccCH-hHhcCCcCCCEEECCCC-cCCeECHhH-cCCCccCCEEECCCCcCCE
Confidence 999999999987764221 12346899999999985 555432222 2468999999999997753
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.21 E-value=1.4e-07 Score=65.42 Aligned_cols=112 Identities=18% Similarity=0.126 Sum_probs=73.2
Q ss_pred CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671 56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN 135 (187)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 135 (187)
+.++.|++++| .++....... -...++|+.|+++++. ++.... .....+++|+.|++++|.++...... ..
T Consensus 29 ~~l~~L~l~~n----~i~~~~~~~~--~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~ 99 (192)
T 1w8a_A 29 LHTTELLLNDN----ELGRISSDGL--FGRLPHLVKLELKRNQ-LTGIEP-NAFEGASHIQELQLGENKIKEISNKM-FL 99 (192)
T ss_dssp TTCSEEECCSC----CCCSBCCSCS--GGGCTTCCEEECCSSC-CCCBCT-TTTTTCTTCCEEECCSCCCCEECSSS-ST
T ss_pred CCCCEEECCCC----cCCccCCccc--cccCCCCCEEECCCCC-CCCcCH-hHcCCcccCCEEECCCCcCCccCHHH-hc
Confidence 47999999977 3332221100 1236899999998875 554321 12345789999999998776422111 23
Q ss_pred cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
.+++|++|+++++ .++...... ...+++|++|++++|.++.
T Consensus 100 ~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 100 GLHQLKTLNLYDN-QISCVMPGS-FEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TCTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECTTCCBCC
T ss_pred CCCCCCEEECCCC-cCCeeCHHH-hhcCCCCCEEEeCCCCccC
Confidence 5788999999985 665432222 3457899999999998763
No 115
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.20 E-value=1.3e-06 Score=71.20 Aligned_cols=117 Identities=11% Similarity=0.140 Sum_probs=76.2
Q ss_pred HHhcCCCCcEEEeeeccCCcccchh-----------------hhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 51 LVGYAYSLKELEISRSRWGCQITDN-----------------GLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 51 ~~~~~~~L~~L~l~~~~~~~~~~~~-----------------~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
.+..+++|+.|++++| .++.. ....+.+ ..+++|++|++++|. +... +......++
T Consensus 201 ~l~~l~~L~~L~Ls~n----~l~~~~~~~~~~~~~~~~~~~~ip~~l~~-~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~ 273 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNS----PFVAENICEAWENENSEYAQQYKTEDLKW-DNLKDLTDVEVYNCP-NLTK-LPTFLKALP 273 (636)
T ss_dssp GGGGCTTCCEEEEESC----CCCGGGBSSSCSCTTSHHHHHHTTSCCCG-GGCTTCCEEEEECCT-TCSS-CCTTTTTCS
T ss_pred HHhcccCCCEEECcCC----ccccccccccccccccchhcccCchhhhh-cccCCCCEEEecCCc-CCcc-ChHHHhcCC
Confidence 3556889999999976 44442 1111110 157889999998875 3221 112234588
Q ss_pred CCCEEEecCCC-CCH-HHHHHHHh-----cCCccceeeccCCCCCcHHHHHH--HHhcCCCCcEEEeeCCCCC
Q 037671 114 SLQHLNIGGTF-ITD-ESLYAIAN-----SCPQLKSIVLWSCRQVTGNGLLF--LVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 114 ~L~~L~l~~~~-~~~-~~~~~l~~-----~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~i~ 177 (187)
+|+.|+++++. ++. ..-..+.. .+++|++|++++| .++ .+.. ....+++|+.|++++|.++
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCCcCc
Confidence 99999999987 887 33333332 3588999999885 555 2222 3456889999999988765
No 116
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=2.8e-06 Score=71.61 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=79.7
Q ss_pred HHhcCCCCcEEEeeeccCCcccchh-----------------hhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 51 LVGYAYSLKELEISRSRWGCQITDN-----------------GLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 51 ~~~~~~~L~~L~l~~~~~~~~~~~~-----------------~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
.+..+++|+.|++++| .++.. ....+.+ ..+++|+.|++++|. +... +......++
T Consensus 443 ~l~~L~~L~~L~Ls~N----~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f-~~L~~L~~L~Ls~N~-l~~~-iP~~l~~L~ 515 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANS----PFTYDNIAVDWEDANSDYAKQYENEELSW-SNLKDLTDVELYNCP-NMTQ-LPDFLYDLP 515 (876)
T ss_dssp GGGGCTTCCEEEEESC----CCCGGGBSSSCSCTTSHHHHHHTTSCCCG-GGCTTCCEEEEESCT-TCCS-CCGGGGGCS
T ss_pred HHhcCCCCCEEECcCC----cCCCCcccccccccccccccccCChhhhh-ccCCCCCEEECcCCC-CCcc-ChHHHhCCC
Confidence 3567899999999987 45541 1111110 157999999999885 2221 113345689
Q ss_pred CCCEEEecCCC-CCH-H---HHHHHH---hcCCccceeeccCCCCCcHHHHHH--HHhcCCCCcEEEeeCCCCC
Q 037671 114 SLQHLNIGGTF-ITD-E---SLYAIA---NSCPQLKSIVLWSCRQVTGNGLLF--LVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 114 ~L~~L~l~~~~-~~~-~---~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~i~ 177 (187)
+|+.|+++++. ++. . .+..+. ..+|+|++|++++| .++ .+.. ....+++|+.|++++|.++
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCCCCcc
Confidence 99999999987 876 3 233322 35679999999985 555 2222 3457899999999999876
No 117
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.19 E-value=3.7e-07 Score=72.21 Aligned_cols=110 Identities=20% Similarity=0.188 Sum_probs=78.1
Q ss_pred cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHH
Q 037671 54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAI 133 (187)
Q Consensus 54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 133 (187)
.+++|+.|++++| .++......+ ..+++|+.|+++++. ++......+...+++|+.|++++|.++.. ..
T Consensus 118 ~l~~L~~L~L~~N----~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~- 186 (487)
T 3oja_A 118 RGQGKKNIYLANN----KITMLRDLDE---GCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV--KG- 186 (487)
T ss_dssp CCSSCEEEECCSS----CCCSGGGBCG---GGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE--EC-
T ss_pred ccCCCCEEECCCC----CCCCCCchhh---cCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccccc--cc-
Confidence 3578999999976 4554332222 236889999998886 66655555555689999999999887743 11
Q ss_pred HhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 134 ANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 134 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
...++.|+.|+++++ .++..... ...+++|+.|++++|.++
T Consensus 187 ~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 187 QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSCCC
T ss_pred cccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCCcCc
Confidence 124788999999985 66543322 346799999999999876
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.18 E-value=8.5e-07 Score=69.60 Aligned_cols=75 Identities=19% Similarity=0.148 Sum_probs=39.1
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++.. . -+..+++|+.|++++| .++.-. + ..+++|++|+++++. ++... ...++
T Consensus 45 ~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n----~l~~~~---~---~~l~~L~~L~Ls~N~-l~~~~----~~~l~ 106 (457)
T 3bz5_A 45 TSLDCHNSSITDM--T-GIEKLTGLTKLICTSN----NITTLD---L---SQNTNLTYLACDSNK-LTNLD----VTPLT 106 (457)
T ss_dssp CEEECCSSCCCCC--T-TGGGCTTCSEEECCSS----CCSCCC---C---TTCTTCSEEECCSSC-CSCCC----CTTCT
T ss_pred CEEEccCCCcccC--h-hhcccCCCCEEEccCC----cCCeEc---c---ccCCCCCEEECcCCC-Cceee----cCCCC
Confidence 5667777666542 2 2456778888888865 333321 1 224556666665543 33321 22345
Q ss_pred CCCEEEecCCCCC
Q 037671 114 SLQHLNIGGTFIT 126 (187)
Q Consensus 114 ~L~~L~l~~~~~~ 126 (187)
+|++|+++++.++
T Consensus 107 ~L~~L~L~~N~l~ 119 (457)
T 3bz5_A 107 KLTYLNCDTNKLT 119 (457)
T ss_dssp TCCEEECCSSCCS
T ss_pred cCCEEECCCCcCC
Confidence 5555555554443
No 119
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.17 E-value=3.1e-07 Score=67.77 Aligned_cols=127 Identities=15% Similarity=0.107 Sum_probs=74.3
Q ss_pred eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671 35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS 114 (187)
Q Consensus 35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 114 (187)
.+++.++.++... ...+..+++|+.|++++| .++.-.. ...+++|+.|+++++. ++. +......+++
T Consensus 35 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n----~l~~~~~-----~~~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~ 101 (290)
T 1p9a_G 35 ILHLSENLLYTFS-LATLMPYTRLTQLNLDRA----ELTKLQV-----DGTLPVLGTLDLSHNQ-LQS--LPLLGQTLPA 101 (290)
T ss_dssp EEECTTSCCSEEE-GGGGTTCTTCCEEECTTS----CCCEEEC-----CSCCTTCCEEECCSSC-CSS--CCCCTTTCTT
T ss_pred EEEcCCCcCCccC-HHHhhcCCCCCEEECCCC----ccCcccC-----CCCCCcCCEEECCCCc-CCc--CchhhccCCC
Confidence 4555555544221 122345677777777765 3332111 1346788888887664 432 2222345788
Q ss_pred CCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 115 LQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 115 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
|+.|+++++.++.-.. .....+++|++|+++++ .++.... .....+++|+.|++++|.++
T Consensus 102 L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 102 LTVLDVSFNRLTSLPL-GALRGLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CCEEECCSSCCCCCCS-STTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTSCCS
T ss_pred CCEEECCCCcCcccCH-HHHcCCCCCCEEECCCC-CCCccCh-hhcccccCCCEEECCCCcCC
Confidence 8999998876653111 11245788999999885 5553321 22345788999999998765
No 120
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.16 E-value=1.5e-07 Score=79.16 Aligned_cols=115 Identities=13% Similarity=0.063 Sum_probs=77.4
Q ss_pred cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHH
Q 037671 54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAI 133 (187)
Q Consensus 54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 133 (187)
..+++++|++++| .++......+ ..+++|+.|+++++..+.... ......+++|++|+++++.++......
T Consensus 22 lp~~l~~LdLs~N----~i~~i~~~~~---~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N~l~~~~p~~- 92 (844)
T 3j0a_A 22 VLNTTERLLLSFN----YIRTVTASSF---PFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSSKIYFLHPDA- 92 (844)
T ss_dssp SCTTCCEEEEESC----CCCEECSSSC---SSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTCCCCEECTTS-
T ss_pred CCCCcCEEECCCC----cCCccChhHC---cccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCCcCcccCHhH-
Confidence 3467999999987 4444333232 347999999999884332211 112356899999999998776432222
Q ss_pred HhcCCccceeeccCCCCCcHHHHHH-HHhcCCCCcEEEeeCCCCCH
Q 037671 134 ANSCPQLKSIVLWSCRQVTGNGLLF-LVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 134 ~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~i~~ 178 (187)
...+++|++|++++| .+++..... ....+++|++|++++|.++.
T Consensus 93 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~ 137 (844)
T 3j0a_A 93 FQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137 (844)
T ss_dssp SCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCC
T ss_pred ccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccc
Confidence 345899999999986 555432221 23468999999999998764
No 121
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.16 E-value=4.6e-07 Score=70.59 Aligned_cols=63 Identities=11% Similarity=0.037 Sum_probs=32.9
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 111 RASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 111 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
.+++|+.|+++++.++.- .. ...+++|++|+++++ .++...... ...+++|+.|++++|.++.
T Consensus 183 ~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 183 GLSNLRYLNLAMCNLREI--PN-LTPLIKLDELDLSGN-HLSAIRPGS-FQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp TCSSCCEEECTTSCCSSC--CC-CTTCSSCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTCCCCE
T ss_pred cccccCeecCCCCcCccc--cc-cCCCcccCEEECCCC-ccCccChhh-hccCccCCEEECCCCceeE
Confidence 355666666666544421 11 233556666777664 444332111 2356777777777776653
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.15 E-value=2.7e-07 Score=70.14 Aligned_cols=112 Identities=10% Similarity=0.086 Sum_probs=75.6
Q ss_pred CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671 56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN 135 (187)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 135 (187)
+.++.|++++| .++.-....+ ...+++|+.|+++++. ++...-. ....+++|+.|++++|.++.-.. ....
T Consensus 39 ~~l~~L~Ls~N----~l~~l~~~~~--~~~l~~L~~L~L~~N~-i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~ 109 (361)
T 2xot_A 39 SYTALLDLSHN----NLSRLRAEWT--PTRLTNLHSLLLSHNH-LNFISSE-AFVPVPNLRYLDLSSNHLHTLDE-FLFS 109 (361)
T ss_dssp TTCSEEECCSS----CCCEECTTSS--SSCCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCCEECT-TTTT
T ss_pred CCCCEEECCCC----CCCccChhhh--hhcccccCEEECCCCc-CCccChh-hccCCCCCCEEECCCCcCCcCCH-HHhC
Confidence 45899999987 4444332222 1247899999998775 5543221 22458999999999987763211 1234
Q ss_pred cCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 136 SCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
.+++|++|+++++ .++...-.. ...+++|+.|++++|.++.
T Consensus 110 ~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 110 DLQALEVLLLYNN-HIVVVDRNA-FEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp TCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCCS
T ss_pred CCcCCCEEECCCC-cccEECHHH-hCCcccCCEEECCCCcCCe
Confidence 5889999999985 665433222 3468999999999997763
No 123
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.12 E-value=2.4e-07 Score=75.93 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=40.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHH-hcCC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLV-NKCG 164 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~ 164 (187)
+++|++|+++++. ++.... .....+++|++|+++++.++...... ...+++|++|+++++ .++......+. ..++
T Consensus 96 l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 96 CTNLTELHLMSNS-IQKIKN-NPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNN-KIQALKSEELDIFANS 171 (680)
T ss_dssp CTTCSEEECCSSC-CCCCCS-CTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSS-CCCCBCHHHHGGGTTC
T ss_pred CCCCCEEECCCCc-cCccCh-hHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCC-cccccCHHHhhccccc
Confidence 4555566555443 221110 01123556666666665443221111 123556666666653 33333222222 1346
Q ss_pred CCcEEEeeCCCCC
Q 037671 165 RLESINVWGTRLP 177 (187)
Q Consensus 165 ~L~~L~l~~~~i~ 177 (187)
+|++|++++|.++
T Consensus 172 ~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 172 SLKKLELSSNQIK 184 (680)
T ss_dssp EESEEECTTCCCC
T ss_pred cccEEECCCCccc
Confidence 6777777766554
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=9.5e-07 Score=71.17 Aligned_cols=121 Identities=14% Similarity=0.124 Sum_probs=78.1
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++. +.. +..+++|+.|++++| .++. ....+ ..+++|+.|+++++. ++. +. -...++
T Consensus 444 ~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N----~l~~-lp~~~---~~l~~L~~L~Ls~N~-l~~--lp-~l~~l~ 508 (567)
T 1dce_A 444 RVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHN----RLRA-LPPAL---AALRCLEVLQASDNA-LEN--VD-GVANLP 508 (567)
T ss_dssp SEEECTTSCCSS--CCC-GGGGTTCCEEECCSS----CCCC-CCGGG---GGCTTCCEEECCSSC-CCC--CG-GGTTCS
T ss_pred eEEEecCCCCCC--CcC-ccccccCcEeecCcc----cccc-cchhh---hcCCCCCEEECCCCC-CCC--Cc-ccCCCC
Confidence 346777776654 233 556788999999876 3331 11122 246889999998775 554 22 344588
Q ss_pred CCCEEEecCCCCCHHH-HHHHHhcCCccceeeccCCCCCcHH--HHHHHHhcCCCCcEEEe
Q 037671 114 SLQHLNIGGTFITDES-LYAIANSCPQLKSIVLWSCRQVTGN--GLLFLVNKCGRLESINV 171 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~L~~L~l 171 (187)
+|+.|++++|.++... ... ...+++|+.|+++++ .++.. ....+...+|+|+.|++
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~~-l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSSCCCSSSTTGG-GGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcEEECCCCCCCCCCCcHH-HhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 9999999997776432 222 245888999999885 55433 23455566888988864
No 125
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.11 E-value=7.9e-07 Score=72.84 Aligned_cols=131 Identities=11% Similarity=0.029 Sum_probs=80.2
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++... ...+..+++|++|++++| .++......+ ..+++|+.|+++++. ++...- .....++
T Consensus 28 ~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~l~~-~~~~~l~ 97 (680)
T 1ziw_A 28 TVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFN----TISKLEPELC---QKLPMLKVLNLQHNE-LSQLSD-KTFAFCT 97 (680)
T ss_dssp SEEECCSSCCCCCC-GGGGGGGTTCSEEECCSS----CCCCCCTTHH---HHCTTCCEEECCSSC-CCCCCT-TTTTTCT
T ss_pred cEEECCCCCCCCcC-HHHHhCCCcCcEEECCCC----ccCccCHHHH---hcccCcCEEECCCCc-cCccCh-hhhccCC
Confidence 45666666554321 122455788999999865 4444333332 236889999998774 443211 1224578
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
+|++|+++++.++.-.... ...+++|++|++++| .++...... ...+++|++|++++|.++
T Consensus 98 ~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNP-FVKQKNLITLDLSHN-GLSSTKLGT-QVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp TCSEEECCSSCCCCCCSCT-TTTCTTCCEEECCSS-CCSCCCCCS-SSCCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCccCccChhH-ccccCCCCEEECCCC-cccccCchh-hcccccCCEEEccCCccc
Confidence 9999999987664311111 245788999999885 444332222 236889999999998765
No 126
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.09 E-value=2e-07 Score=66.66 Aligned_cols=130 Identities=8% Similarity=0.024 Sum_probs=56.1
Q ss_pred eeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCC
Q 037671 35 NLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASS 114 (187)
Q Consensus 35 ~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 114 (187)
.+++.+++++.... ..+..+++|+.|++++|. .++.-....+ ..+++|++|++++|+.++.... .....+++
T Consensus 35 ~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~---~l~~i~~~~f---~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~ 106 (239)
T 2xwt_C 35 TLKLIETHLRTIPS-HAFSNLPNISRIYVSIDV---TLQQLESHSF---YNLSKVTHIEIRNTRNLTYIDP-DALKELPL 106 (239)
T ss_dssp EEEEESCCCSEECT-TTTTTCTTCCEEEEECCS---SCCEECTTTE---ESCTTCCEEEEEEETTCCEECT-TSEECCTT
T ss_pred EEEEeCCcceEECH-HHccCCCCCcEEeCCCCC---CcceeCHhHc---CCCcCCcEEECCCCCCeeEcCH-HHhCCCCC
Confidence 45555554442111 123456777777777652 1222111111 2356677777765222432211 11123566
Q ss_pred CCEEEecCCCCCHHHHHHHHhcCCccc---eeeccCCCCCcHHHHHHHHhcCCCCc-EEEeeCCCC
Q 037671 115 LQHLNIGGTFITDESLYAIANSCPQLK---SIVLWSCRQVTGNGLLFLVNKCGRLE-SINVWGTRL 176 (187)
Q Consensus 115 L~~L~l~~~~~~~~~~~~l~~~~~~L~---~L~l~~~~~~~~~~~~~l~~~~~~L~-~L~l~~~~i 176 (187)
|+.|+++++.++. +.. ...++.|+ +|+++++..++..... ....+++|+ +|++++|.+
T Consensus 107 L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 107 LKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp CCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSCCC
T ss_pred CCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCCCC
Confidence 6666666644432 111 22344444 5555553233222111 112345555 555555544
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.08 E-value=2.3e-06 Score=67.16 Aligned_cols=102 Identities=20% Similarity=0.152 Sum_probs=74.7
Q ss_pred cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHH
Q 037671 54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAI 133 (187)
Q Consensus 54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 133 (187)
.+++|+.|+++++ .+++- ..+ ..+++|++|+++++. ++... ...+++|+.|+++++.++.-.
T Consensus 40 ~l~~L~~L~Ls~n----~l~~~--~~l---~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~l~~~~---- 101 (457)
T 3bz5_A 40 QLATLTSLDCHNS----SITDM--TGI---EKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNKLTNLD---- 101 (457)
T ss_dssp HHTTCCEEECCSS----CCCCC--TTG---GGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSCCSCCC----
T ss_pred HcCCCCEEEccCC----CcccC--hhh---cccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCCCceee----
Confidence 4688999999976 44432 122 347999999999886 65532 456899999999998777532
Q ss_pred HhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 134 ANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 134 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
...+++|++|+++++ .++... ...+++|++|++++|.++.
T Consensus 102 ~~~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNTLTE 141 (457)
T ss_dssp CTTCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSCCSC
T ss_pred cCCCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCCccce
Confidence 346889999999985 555432 3567889999998887764
No 128
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.05 E-value=4e-07 Score=68.31 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=70.4
Q ss_pred CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHh
Q 037671 56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIAN 135 (187)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 135 (187)
++|+.|++++| .++......+ ..+++|+.|+++++. ++..... ....+++|+.|+++++.++. +..-..
T Consensus 193 ~~L~~L~l~~n----~i~~~~~~~l---~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~l~~--lp~~l~ 261 (332)
T 2ft3_A 193 ETLNELHLDHN----KIQAIELEDL---LRYSKLYRLGLGHNQ-IRMIENG-SLSFLPTLRELHLDNNKLSR--VPAGLP 261 (332)
T ss_dssp SSCSCCBCCSS----CCCCCCTTSS---TTCTTCSCCBCCSSC-CCCCCTT-GGGGCTTCCEEECCSSCCCB--CCTTGG
T ss_pred CCCCEEECCCC----cCCccCHHHh---cCCCCCCEEECCCCc-CCcCChh-HhhCCCCCCEEECCCCcCee--cChhhh
Confidence 57889999876 4444333333 236788999998775 4432211 22457889999999877662 211134
Q ss_pred cCCccceeeccCCCCCcHHHHHHHHhc-----CCCCcEEEeeCCCCC
Q 037671 136 SCPQLKSIVLWSCRQVTGNGLLFLVNK-----CGRLESINVWGTRLP 177 (187)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~l~~~-----~~~L~~L~l~~~~i~ 177 (187)
.++.|++|+++++ .++..+...+... .+.|+.|++++|+++
T Consensus 262 ~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 262 DLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCccc
Confidence 5788999999884 6665554433322 467888999988665
No 129
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.04 E-value=3.3e-07 Score=68.73 Aligned_cols=107 Identities=17% Similarity=0.098 Sum_probs=59.4
Q ss_pred CCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhc
Q 037671 57 SLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANS 136 (187)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 136 (187)
+|+.|++++| .++.-. ....++|++|+++++. ++...... ...+++|+.|+++++.++...... ...
T Consensus 173 ~L~~L~l~~n----~l~~l~------~~~~~~L~~L~l~~n~-i~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~-~~~ 239 (332)
T 2ft3_A 173 KLNYLRISEA----KLTGIP------KDLPETLNELHLDHNK-IQAIELED-LLRYSKLYRLGLGHNQIRMIENGS-LSF 239 (332)
T ss_dssp CCSCCBCCSS----BCSSCC------SSSCSSCSCCBCCSSC-CCCCCTTS-STTCTTCSCCBCCSSCCCCCCTTG-GGG
T ss_pred ccCEEECcCC----CCCccC------ccccCCCCEEECCCCc-CCccCHHH-hcCCCCCCEEECCCCcCCcCChhH-hhC
Confidence 6777777755 333211 0113677777777664 44322111 234677888888776655421111 234
Q ss_pred CCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCHH
Q 037671 137 CPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPLD 179 (187)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 179 (187)
++.|++|++++| .++.- ......+++|+.|++++|.++..
T Consensus 240 l~~L~~L~L~~N-~l~~l--p~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 240 LPTLRELHLDNN-KLSRV--PAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CTTCCEEECCSS-CCCBC--CTTGGGCTTCCEEECCSSCCCBC
T ss_pred CCCCCEEECCCC-cCeec--ChhhhcCccCCEEECCCCCCCcc
Confidence 677888888774 44421 11134577788888887776543
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.03 E-value=3.5e-06 Score=68.54 Aligned_cols=85 Identities=20% Similarity=0.167 Sum_probs=58.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR 165 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 165 (187)
.++|+.|+++++. ++... ..+++|+.|++++|.++. +...+++|++|++++| .++.- ......+++
T Consensus 220 ~~~L~~L~Ls~N~-L~~lp-----~~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~Ls~N-~L~~l--p~~l~~l~~ 285 (622)
T 3g06_A 220 PSGLKELIVSGNR-LTSLP-----VLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRN-QLTRL--PESLIHLSS 285 (622)
T ss_dssp CTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS-CCCSC--CGGGGGSCT
T ss_pred CCCCCEEEccCCc-cCcCC-----CCCCcCcEEECCCCCCCc-----CCcccccCcEEeCCCC-CCCcC--CHHHhhccc
Confidence 3678888887664 44311 446788999998877662 2225788999999885 55522 222456899
Q ss_pred CcEEEeeCCCCCHHHHHhh
Q 037671 166 LESINVWGTRLPLDCFIGL 184 (187)
Q Consensus 166 L~~L~l~~~~i~~~~~~~L 184 (187)
|+.|++++|.++......+
T Consensus 286 L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 286 ETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp TCEEECCSCCCCHHHHHHH
T ss_pred cCEEEecCCCCCCcCHHHH
Confidence 9999999999987665544
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.03 E-value=8.1e-07 Score=73.57 Aligned_cols=111 Identities=25% Similarity=0.173 Sum_probs=74.5
Q ss_pred HhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHH
Q 037671 52 VGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLY 131 (187)
Q Consensus 52 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 131 (187)
+..++.|+.|+|++|... .+.... ..+++|+.|+|+++. ++ .+..-+..+++|+.|+|++|.++ .+-
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~~~~-------~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~l~--~lp 286 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NISANI-------FKYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNRLT--SLP 286 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCCGGG-------GGCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSCCS--SCC
T ss_pred hccCCCCcEEECCCCCCC-CCChhh-------cCCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCcCC--ccC
Confidence 445678999999976311 222221 136889999998875 55 22222356899999999998877 221
Q ss_pred HHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCCH
Q 037671 132 AIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLPL 178 (187)
Q Consensus 132 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 178 (187)
.-...+++|++|+|++| .++.-. .-...+++|+.|+|++|.++.
T Consensus 287 ~~~~~l~~L~~L~L~~N-~l~~lp--~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDN-MVTTLP--WEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SSGGGGTTCSEEECCSS-CCCCCC--SSTTSCTTCCCEECTTSCCCS
T ss_pred hhhcCCCCCCEEECCCC-CCCccC--hhhhcCCCccEEeCCCCccCC
Confidence 22345788999999985 555222 113568999999999998874
No 132
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.02 E-value=3e-07 Score=68.54 Aligned_cols=86 Identities=13% Similarity=0.095 Sum_probs=42.9
Q ss_pred HhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHH
Q 037671 52 VGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLY 131 (187)
Q Consensus 52 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 131 (187)
+..+++|+.|++++| .++......+ ..+++|++|+++++. ++... ......+++|++|+++++.++.....
T Consensus 97 l~~l~~L~~L~Ls~n----~l~~~~p~~~---~~l~~L~~L~Ls~N~-l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~ 167 (313)
T 1ogq_A 97 IAKLTQLHYLYITHT----NVSGAIPDFL---SQIKTLVTLDFSYNA-LSGTL-PPSISSLPNLVGITFDGNRISGAIPD 167 (313)
T ss_dssp GGGCTTCSEEEEEEE----CCEEECCGGG---GGCTTCCEEECCSSE-EESCC-CGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred HhcCCCCCEEECcCC----eeCCcCCHHH---hCCCCCCEEeCCCCc-cCCcC-ChHHhcCCCCCeEECcCCcccCcCCH
Confidence 356778888888876 3332222222 235667777776553 32111 11123466666666666555422111
Q ss_pred HHHhcCC-ccceeeccC
Q 037671 132 AIANSCP-QLKSIVLWS 147 (187)
Q Consensus 132 ~l~~~~~-~L~~L~l~~ 147 (187)
.+.. ++ .|++|++++
T Consensus 168 ~l~~-l~~~L~~L~L~~ 183 (313)
T 1ogq_A 168 SYGS-FSKLFTSMTISR 183 (313)
T ss_dssp GGGC-CCTTCCEEECCS
T ss_pred HHhh-hhhcCcEEECcC
Confidence 2222 33 555666555
No 133
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.00 E-value=2.4e-06 Score=69.72 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=56.6
Q ss_pred cCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHH-HHh-----cCCCCCEEEecCCCCCH
Q 037671 54 YAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQ-LIS-----RASSLQHLNIGGTFITD 127 (187)
Q Consensus 54 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~-----~~~~L~~L~l~~~~~~~ 127 (187)
.+++|+.|++++| .+.......+ ..+++|+.|+++++..++...+.. +.. .+++|+.|+++++.++
T Consensus 247 ~l~~L~~L~L~~n----~l~~~~p~~l---~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 247 NLKDLTDVEVYNC----PNLTKLPTFL---KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp GCTTCCEEEEECC----TTCSSCCTTT---TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred ccCCCCEEEecCC----cCCccChHHH---hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 6788999999976 3333322232 236889999998875355522222 222 2488999999987776
Q ss_pred HHHHH--HHhcCCccceeeccCCCCCc
Q 037671 128 ESLYA--IANSCPQLKSIVLWSCRQVT 152 (187)
Q Consensus 128 ~~~~~--l~~~~~~L~~L~l~~~~~~~ 152 (187)
.+.. ....+++|++|+++++ .++
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N-~l~ 343 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYN-QLE 343 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSC-CCE
T ss_pred -ccCchhhhccCCCCCEEeCcCC-cCc
Confidence 2322 3345778888888775 443
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.87 E-value=8e-07 Score=61.53 Aligned_cols=107 Identities=20% Similarity=0.112 Sum_probs=69.0
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+.+.++.++.......+..+++|+.|++++| .++......+ ...++|+.|+++++. ++..... ....++
T Consensus 32 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~ 102 (192)
T 1w8a_A 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRN----QLTGIEPNAF---EGASHIQELQLGENK-IKEISNK-MFLGLH 102 (192)
T ss_dssp SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS----CCCCBCTTTT---TTCTTCCEEECCSCC-CCEECSS-SSTTCT
T ss_pred CEEECCCCcCCccCCccccccCCCCCEEECCCC----CCCCcCHhHc---CCcccCCEEECCCCc-CCccCHH-HhcCCC
Confidence 456666666543222223567899999999987 4444322232 236899999999875 5543221 123579
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCC
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQ 150 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 150 (187)
+|+.|++++|.++..... ....+++|++|+++++.-
T Consensus 103 ~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCB
T ss_pred CCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCc
Confidence 999999999877642111 124578899999988543
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.83 E-value=2.6e-06 Score=57.81 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=24.2
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWS 147 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 147 (187)
.++|+.|+++++. ++...- .....+++|+.|++++|.++.-.- .....+++|++|++++
T Consensus 53 l~~L~~L~Ls~N~-l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 53 LTQLTRLDLDNNQ-LTVLPA-GVFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred cccCCEEECCCCC-cCccCh-hhccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCC
Confidence 3555555555443 321110 111234555555555544432100 1122345555555554
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.82 E-value=1.7e-05 Score=57.77 Aligned_cols=85 Identities=18% Similarity=0.242 Sum_probs=54.3
Q ss_pred ccCCCccEEEecCCCCCCH-HHHHHHHhcCCCCCEEEecCCCCCHH-HHHHHHhcCCccceeeccCCCCCcH------HH
Q 037671 84 KCISNLTSISLWGLTGITD-KGVVQLISRASSLQHLNIGGTFITDE-SLYAIANSCPQLKSIVLWSCRQVTG------NG 155 (187)
Q Consensus 84 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~------~~ 155 (187)
..+++|+.|+|+++. ++. .++......+++|+.|+|++|.+++. .+..+. .+ .|++|++.++ .+.. ..
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~N-pl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGN-SLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTS-TTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCC-cCccccCcchhH
Confidence 457888888888775 433 23444555688888888888877753 232222 12 7888888875 4442 23
Q ss_pred HHHHHhcCCCCcEEEee
Q 037671 156 LLFLVNKCGRLESINVW 172 (187)
Q Consensus 156 ~~~l~~~~~~L~~L~l~ 172 (187)
...+...+|+|+.||-.
T Consensus 243 ~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHCTTCCEESSC
T ss_pred HHHHHHHCcccCeECCc
Confidence 34566678888887643
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.80 E-value=4e-06 Score=58.10 Aligned_cols=105 Identities=13% Similarity=0.082 Sum_probs=68.8
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++. +...+..+++|+.|++++| .++.-....+ ...++|+.|+++++. ++..... ....++
T Consensus 34 ~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N----~i~~i~~~~f---~~l~~L~~L~Ls~N~-l~~i~~~-~f~~l~ 102 (193)
T 2wfh_A 34 TELYLDGNQFTL--VPKELSNYKHLTLIDLSNN----RISTLSNQSF---SNMTQLLTLILSYNR-LRCIPPR-TFDGLK 102 (193)
T ss_dssp CEEECCSSCCCS--CCGGGGGCTTCCEEECCSS----CCCCCCTTTT---TTCTTCCEEECCSSC-CCBCCTT-TTTTCT
T ss_pred CEEECCCCcCch--hHHHhhcccCCCEEECCCC----cCCEeCHhHc---cCCCCCCEEECCCCc-cCEeCHH-HhCCCC
Confidence 456777776653 2234567899999999987 4443332222 236899999998875 5443221 224579
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCC
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQ 150 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 150 (187)
+|+.|++++|.++.-.. .....+++|+.|++++++-
T Consensus 103 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 103 SLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCE
T ss_pred CCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCe
Confidence 99999999987763111 1234578999999988543
No 138
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.78 E-value=2.6e-06 Score=60.82 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=71.7
Q ss_pred CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCHHHHHHHH
Q 037671 56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG-TFITDESLYAIA 134 (187)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~ 134 (187)
+.++.|+++++ .++.-....+ ..+++|+.|+++++..++...-. ....+++|++|++++ +.++.-.. ...
T Consensus 31 ~~l~~L~l~~n----~l~~i~~~~~---~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~-~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIET----HLRTIPSHAF---SNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDP-DAL 101 (239)
T ss_dssp TTCCEEEEESC----CCSEECTTTT---TTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECT-TSE
T ss_pred CcccEEEEeCC----cceEECHHHc---cCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCH-HHh
Confidence 47999999976 4443322222 34789999999987423322111 224589999999998 77763211 123
Q ss_pred hcCCccceeeccCCCCCcHHHHHHHHhcCCCCc---EEEeeCC-CCC
Q 037671 135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLE---SINVWGT-RLP 177 (187)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~---~L~l~~~-~i~ 177 (187)
..+++|++|+++++ .++.- .. ...+++|+ +|++++| .++
T Consensus 102 ~~l~~L~~L~l~~n-~l~~l--p~-~~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 102 KELPLLKFLGIFNT-GLKMF--PD-LTKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp ECCTTCCEEEEEEE-CCCSC--CC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred CCCCCCCEEeCCCC-CCccc--cc-cccccccccccEEECCCCcchh
Confidence 45889999999986 44432 12 34677887 9999999 765
No 139
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.73 E-value=1.1e-05 Score=65.09 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=15.5
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeec
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRS 66 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 66 (187)
..+++.++.++. +.. ...++|+.|++++|
T Consensus 62 ~~L~Ls~n~L~~--lp~--~l~~~L~~L~Ls~N 90 (571)
T 3cvr_A 62 SELQLNRLNLSS--LPD--NLPPQITVLEITQN 90 (571)
T ss_dssp SEEECCSSCCSC--CCS--CCCTTCSEEECCSS
T ss_pred cEEEeCCCCCCc--cCH--hHcCCCCEEECcCC
Confidence 346666665542 111 12356777777765
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.70 E-value=5.2e-06 Score=56.54 Aligned_cols=59 Identities=14% Similarity=0.240 Sum_probs=25.8
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWS 147 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 147 (187)
.++|+.|+++++. ++...- .....+++|+.|++++|.++.-. ......+++|++|++++
T Consensus 56 l~~L~~L~Ls~N~-l~~i~~-~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 56 LVNLQQLYFNSNK-LTAIPT-GVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCS
T ss_pred CcCCCEEECCCCC-CCccCh-hHhCCcchhhEEECCCCccceeC-HHHhccccCCCEEEeCC
Confidence 4556666665543 332110 11123555666666655444210 01122355556666655
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.65 E-value=6.2e-06 Score=56.09 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=67.1
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCC
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRAS 113 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 113 (187)
+.+++.++.++.. ....+..+++|+.|++++| .++.-....+ ..+++|+.|+++++. ++.... .....++
T Consensus 31 ~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~---~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~ 100 (177)
T 2o6r_A 31 TRLELESNKLQSL-PHGVFDKLTQLTKLSLSQN----QIQSLPDGVF---DKLTKLTILYLHENK-LQSLPN-GVFDKLT 100 (177)
T ss_dssp SEEECCSSCCCCC-CTTTTTTCTTCSEEECCSS----CCCCCCTTTT---TTCTTCCEEECCSSC-CCCCCT-TTTTTCT
T ss_pred cEEEeCCCcccEe-CHHHhcCcccccEEECCCC----cceEeChhHc---cCCCccCEEECCCCC-ccccCH-HHhhCCc
Confidence 4566766665521 1223456789999999976 4443222222 346899999998875 543211 1234579
Q ss_pred CCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCC
Q 037671 114 SLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCR 149 (187)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 149 (187)
+|+.|+++++.++.- ...+...+++|++|++++++
T Consensus 101 ~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 101 QLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCC
Confidence 999999999877631 11223558899999999864
No 142
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.65 E-value=0.00013 Score=53.04 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=59.8
Q ss_pred HHHHhcCCCCcEEEeeeccCCcccchh-hhhhhhhhccCCCccEEEecCCCCCCHH-HHHHHHhcCCCCCEEEecCCCCC
Q 037671 49 ARLVGYAYSLKELEISRSRWGCQITDN-GLYRMSFAKCISNLTSISLWGLTGITDK-GVVQLISRASSLQHLNIGGTFIT 126 (187)
Q Consensus 49 ~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 126 (187)
......++.|+.|+|++| .++.- ++... ...+++|+.|+|+++. ++.. .+..+. .. +|+.|++.+|.+.
T Consensus 163 ~i~~~~l~~L~~L~Ls~N----~l~~l~~l~~~--~~~l~~L~~L~Ls~N~-i~~~~~l~~l~-~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNN----RLYRLDDMSSI--VQKAPNLKILNLSGNE-LKSERELDKIK-GL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHHHHHCTTCCEEECTTS----CCCCCGGGTTH--HHHSTTCCEEECTTSC-CCSGGGGGGGT-TS-CCSEEECTTSTTG
T ss_pred HHHHhhCCCCCEEECCCC----CCCCCccchhH--HhhCCCCCEEECCCCc-cCCchhhhhcc-cC-CcceEEccCCcCc
Confidence 334456899999999987 44431 11111 1347999999999876 5543 332222 23 9999999998887
Q ss_pred H------HHHHHHHhcCCccceeecc
Q 037671 127 D------ESLYAIANSCPQLKSIVLW 146 (187)
Q Consensus 127 ~------~~~~~l~~~~~~L~~L~l~ 146 (187)
. .....+...+|+|+.|+=.
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred cccCcchhHHHHHHHHCcccCeECCc
Confidence 4 3344567779999998753
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.58 E-value=7.7e-05 Score=55.78 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=22.9
Q ss_pred ceeeecccccCHHHHHHHHhcCCCCcEEEeeecc
Q 037671 34 KNLSFAGWKMDDDSTARLVGYAYSLKELEISRSR 67 (187)
Q Consensus 34 ~~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 67 (187)
.++.+.+. +....+..+...+++|+.|||++|.
T Consensus 28 ~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~ 60 (329)
T 3sb4_A 28 THLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAE 60 (329)
T ss_dssp SEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEE
T ss_pred eEEEEecc-ccHHHHHHHHHhhccCeEEecCcce
Confidence 44556553 5556666666658899999999873
No 144
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.52 E-value=3.2e-05 Score=62.32 Aligned_cols=89 Identities=12% Similarity=0.014 Sum_probs=45.5
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHH-H-HHHHhcCCccceeeccCCCCCcHHHHHHHHhcC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDES-L-YAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKC 163 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 163 (187)
+++|+.|+++++. ++. +..+ .++|+.|++++|.++.-. + ..+....+.|+.|++++| .++.-. ..+. .+
T Consensus 159 l~~L~~L~Ls~N~-L~~--lp~l---~~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp-~~l~-~l 229 (571)
T 3cvr_A 159 PTSLEVLSVRNNQ-LTF--LPEL---PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN-RITHIP-ENIL-SL 229 (571)
T ss_dssp CTTCCEEECCSSC-CSC--CCCC---CTTCCEEECCSSCCSSCCCCC--------CCEEEECCSS-CCCCCC-GGGG-GS
T ss_pred CCCcCEEECCCCC-CCC--cchh---hCCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCC-cceecC-HHHh-cC
Confidence 3456666665553 332 1111 166777777776554100 0 011111222378888774 554321 1223 38
Q ss_pred CCCcEEEeeCCCCCHHHHHh
Q 037671 164 GRLESINVWGTRLPLDCFIG 183 (187)
Q Consensus 164 ~~L~~L~l~~~~i~~~~~~~ 183 (187)
++|+.|++++|.++......
T Consensus 230 ~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CTTEEEECCSSSCCHHHHHH
T ss_pred CCCCEEEeeCCcCCCcCHHH
Confidence 89999999999888665443
No 145
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.48 E-value=9.5e-05 Score=60.21 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=28.5
Q ss_pred CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 037671 56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFIT 126 (187)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 126 (187)
++|+.|++++| .++. + ...+++|+.|+++++. ++. +. ...++|+.|++++|.++
T Consensus 61 ~~L~~L~L~~N----~l~~-----l--p~~l~~L~~L~Ls~N~-l~~--lp---~~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 61 AHITTLVIPDN----NLTS-----L--PALPPELRTLEVSGNQ-LTS--LP---VLPPGLLELSIFSNPLT 114 (622)
T ss_dssp TTCSEEEECSC----CCSC-----C--CCCCTTCCEEEECSCC-CSC--CC---CCCTTCCEEEECSCCCC
T ss_pred CCCcEEEecCC----CCCC-----C--CCcCCCCCEEEcCCCc-CCc--CC---CCCCCCCEEECcCCcCC
Confidence 56777777765 3331 1 0124667777776654 332 11 13566666666665444
No 146
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.42 E-value=3.3e-05 Score=56.57 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=26.5
Q ss_pred CccccccchhHHHHHHHhhHHHHHHh-hhhhcc
Q 037671 1 FLFVFVIPFVCLLRVSSVCKKWKLGV-KQSLAR 32 (187)
Q Consensus 1 ~I~~~l~~~~~~~~~~~vck~w~~~~-~~~l~~ 32 (187)
+||+||++ +|++++++|||+|+.++ .+.+|+
T Consensus 15 ~IlsfL~p-~DL~~l~~vcr~Wr~la~D~~LWr 46 (312)
T 3l2o_B 15 YILSFLSP-HDLCQLGSTNHYWNETVRDPILWR 46 (312)
T ss_dssp HHHHTSCH-HHHHHHHTTCHHHHHHHTCHHHHH
T ss_pred HHHhcCCH-HHHHHHHHHHHHHHHHhccchHHH
Confidence 58999995 99999999999999987 445554
No 147
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.29 E-value=0.00011 Score=57.50 Aligned_cols=15 Identities=20% Similarity=0.005 Sum_probs=7.5
Q ss_pred cCCCCcEEEeeCCCC
Q 037671 162 KCGRLESINVWGTRL 176 (187)
Q Consensus 162 ~~~~L~~L~l~~~~i 176 (187)
.+++|++|++++|.+
T Consensus 235 ~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 235 NLPFLTTIYADNNLL 249 (454)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred CCCCCCEEECCCCcC
Confidence 344555555555544
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.29 E-value=7.4e-05 Score=50.74 Aligned_cols=88 Identities=14% Similarity=0.073 Sum_probs=59.3
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR 165 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 165 (187)
.++|+.|+++++. ++.... .....+++|+.|++++|.++.-. ..+...+++|++|+++++ .++...- .....+++
T Consensus 32 ~~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~ 106 (174)
T 2r9u_A 32 PTDKQRLWLNNNQ-ITKLEP-GVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDN-HLKSIPR-GAFDNLKS 106 (174)
T ss_dssp CTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTT
T ss_pred CCCCcEEEeCCCC-ccccCH-HHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCC-ccceeCH-HHhccccC
Confidence 3779999998775 443211 22345889999999998776411 112346889999999884 6553221 22346899
Q ss_pred CcEEEeeCCCCCH
Q 037671 166 LESINVWGTRLPL 178 (187)
Q Consensus 166 L~~L~l~~~~i~~ 178 (187)
|+.|++++|.+.-
T Consensus 107 L~~L~L~~N~~~c 119 (174)
T 2r9u_A 107 LTHIYLYNNPWDC 119 (174)
T ss_dssp CSEEECCSSCBCT
T ss_pred CCEEEeCCCCccc
Confidence 9999999998763
No 149
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.26 E-value=0.00017 Score=56.54 Aligned_cols=14 Identities=7% Similarity=0.157 Sum_probs=7.1
Q ss_pred CCCCCEEEecCCCC
Q 037671 112 ASSLQHLNIGGTFI 125 (187)
Q Consensus 112 ~~~L~~L~l~~~~~ 125 (187)
+++|+.|+++++.+
T Consensus 236 l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 236 LPFLTTIYADNNLL 249 (454)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCcC
Confidence 45555555555443
No 150
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.22 E-value=4.8e-05 Score=63.07 Aligned_cols=86 Identities=19% Similarity=0.175 Sum_probs=59.5
Q ss_pred ccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcC
Q 037671 84 KCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKC 163 (187)
Q Consensus 84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 163 (187)
...++|+.|+++++. +.. +..-...+++|+.|+|++|.++ .+-.-...+++|+.|+|+++ .++. +..-...+
T Consensus 221 ~~l~~L~~L~Ls~n~-l~~--l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l 292 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ-IFN--ISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHN-RLTS--LPAELGSC 292 (727)
T ss_dssp -CCCCCCEEECTTSC-CSC--CCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTS-CCSS--CCSSGGGG
T ss_pred ccCCCCcEEECCCCC-CCC--CChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCC-cCCc--cChhhcCC
Confidence 346889999998875 432 1111225899999999998877 22222356889999999985 5652 22223468
Q ss_pred CCCcEEEeeCCCCC
Q 037671 164 GRLESINVWGTRLP 177 (187)
Q Consensus 164 ~~L~~L~l~~~~i~ 177 (187)
++|++|+|++|.++
T Consensus 293 ~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT 306 (727)
T ss_dssp TTCSEEECCSSCCC
T ss_pred CCCCEEECCCCCCC
Confidence 99999999999775
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.19 E-value=9.1e-05 Score=50.06 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=59.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR 165 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 165 (187)
.++|+.|+++++. ++...- .....+++|+.|++++|.++.-. ......+++|++|+++++ .++...- .....+++
T Consensus 29 ~~~l~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~ 103 (170)
T 3g39_A 29 PTTTQVLYLYDNQ-ITKLEP-GVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDN-QLKSIPR-GAFDNLKS 103 (170)
T ss_dssp CTTCSEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTT
T ss_pred CCCCcEEEcCCCc-CCccCh-hhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCC-ccCEeCH-HHhcCCCC
Confidence 4778999998775 443211 12245789999999998776311 122356889999999884 5553321 22346889
Q ss_pred CcEEEeeCCCCCHH
Q 037671 166 LESINVWGTRLPLD 179 (187)
Q Consensus 166 L~~L~l~~~~i~~~ 179 (187)
|+.|++++|.++-.
T Consensus 104 L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 104 LTHIWLLNNPWDCA 117 (170)
T ss_dssp CCEEECCSSCBCTT
T ss_pred CCEEEeCCCCCCCC
Confidence 99999999987643
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.17 E-value=0.00018 Score=53.79 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCCCCcEEEeee
Q 037671 45 DDSTARLVGYAYSLKELEISR 65 (187)
Q Consensus 45 ~~~~~~~~~~~~~L~~L~l~~ 65 (187)
......+..++++|+.+++++
T Consensus 215 ~~~~~~l~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 215 NADFKLIRDYMPNLVSLDISK 235 (329)
T ss_dssp HHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHHhcCCCeEEECCC
Confidence 333444444555666666654
No 153
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.10 E-value=2.6e-05 Score=58.88 Aligned_cols=62 Identities=13% Similarity=-0.004 Sum_probs=39.0
Q ss_pred CCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCCC
Q 037671 113 SSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRLP 177 (187)
Q Consensus 113 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 177 (187)
..++.|+++++.++. +..-+.....++++++.+++.++.-.- ..+..+++|+.|++++|.++
T Consensus 154 ~~l~~L~L~~N~i~~--i~~~~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 154 FESVILWLNKNGIQE--IHNSAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SSCEEEECCSSCCCE--ECTTSSTTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSCCC
T ss_pred hhhhhhccccccccC--CChhhccccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCCcC
Confidence 457888888876652 111112245688888877666554331 22356788999999998664
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.00 E-value=8.7e-05 Score=55.78 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=44.8
Q ss_pred HhcCCCCcEEEeee-ccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHH
Q 037671 52 VGYAYSLKELEISR-SRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESL 130 (187)
Q Consensus 52 ~~~~~~L~~L~l~~-~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 130 (187)
+..+.+|+.|+|++ | .++.-....+ ..+++|+.|+|+++. ++...- ..+..+++|+.|+|++|.++.-.
T Consensus 27 l~~~~~L~~L~l~~~n----~l~~~~~~~~---~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~- 96 (347)
T 2ifg_A 27 LPGAENLTELYIENQQ----HLQHLELRDL---RGLGELRNLTIVKSG-LRFVAP-DAFHFTPRLSRLNLSFNALESLS- 96 (347)
T ss_dssp SCSCSCCSEEECCSCS----SCCEECGGGS---CSCCCCSEEECCSSC-CCEECT-TGGGSCSCCCEEECCSSCCSCCC-
T ss_pred CCCCCCeeEEEccCCC----CCCCcChhHh---ccccCCCEEECCCCc-cceeCH-HHhcCCcCCCEEeCCCCccceeC-
Confidence 44556688888874 4 2322221111 235777888887664 443211 12244677777777776654210
Q ss_pred HHHHhcCCccceeeccCC
Q 037671 131 YAIANSCPQLKSIVLWSC 148 (187)
Q Consensus 131 ~~l~~~~~~L~~L~l~~~ 148 (187)
..+...++ |+.|++.++
T Consensus 97 ~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 97 WKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp STTTCSCC-CCEEECCSS
T ss_pred HHHcccCC-ceEEEeeCC
Confidence 01122233 777777664
No 155
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=96.87 E-value=0.0002 Score=52.65 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=26.8
Q ss_pred CccccccchhHHH-HHHHhhHHHHHHh-hhhhccc
Q 037671 1 FLFVFVIPFVCLL-RVSSVCKKWKLGV-KQSLARR 33 (187)
Q Consensus 1 ~I~~~l~~~~~~~-~~~~vck~w~~~~-~~~l~~~ 33 (187)
.||+|||. ++++ +|++|||+|+.++ .+.+|++
T Consensus 61 ~Il~~Lp~-~~L~~r~~~VCk~Wr~l~~~~~~w~~ 94 (297)
T 2e31_A 61 RVLAELPA-TELVQACRLVCLRWKELVDGAPLWLL 94 (297)
T ss_dssp HHHHTSCH-HHHHHTGGGTCHHHHHHHTSHHHHHH
T ss_pred HHHHcCCH-HHHHHHHHHHhHHHHHHhcChHHHHH
Confidence 38999995 9999 9999999999977 4466654
No 156
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.75 E-value=0.00045 Score=53.26 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=27.1
Q ss_pred CccccccchhHHHHHHHhhHHHHHHh-hhhhccc
Q 037671 1 FLFVFVIPFVCLLRVSSVCKKWKLGV-KQSLARR 33 (187)
Q Consensus 1 ~I~~~l~~~~~~~~~~~vck~w~~~~-~~~l~~~ 33 (187)
+||+||+ .++++++++|||+|++++ .+.+|+.
T Consensus 25 ~i~~~l~-~~~l~~~~~v~~~w~~~~~~~~~w~~ 57 (435)
T 1p22_A 25 NILSYLD-AKSLCAAELVCKEWYRVTSDGMLWKK 57 (435)
T ss_dssp HHHTTCC-HHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred HHHhcCC-HHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 4899999 599999999999999976 5566654
No 157
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.72 E-value=0.00044 Score=53.55 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=27.7
Q ss_pred CccccccchhHHHHHHHhhHHHHHHh-h-hhhccc
Q 037671 1 FLFVFVIPFVCLLRVSSVCKKWKLGV-K-QSLARR 33 (187)
Q Consensus 1 ~I~~~l~~~~~~~~~~~vck~w~~~~-~-~~l~~~ 33 (187)
+||+||+ .++++++++|||+|++++ . +.+|+.
T Consensus 25 ~i~~~l~-~~~l~~~~~v~~~w~~~~~~~~~~w~~ 58 (464)
T 3v7d_B 25 KIFNYLQ-FEDIINSLGVSQNWNKIIRKSTSLWKK 58 (464)
T ss_dssp HHHTTSC-HHHHHHHHTTCHHHHHHHTTCHHHHHH
T ss_pred HHHhcCC-HHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4899999 599999999999999977 4 577765
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.36 E-value=0.0012 Score=49.51 Aligned_cols=87 Identities=15% Similarity=0.079 Sum_probs=51.9
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCC
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGR 165 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 165 (187)
.++|+.|+|++.+.++...-. .+..+++|+.|+|++|.++.-.- .....+++|+.|+|+++ .++... ..++...+
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~~~- 104 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFN-ALESLS-WKTVQGLS- 104 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSS-CCSCCC-STTTCSCC-
T ss_pred CCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCCC-ccceeC-HHHcccCC-
Confidence 567888888752334432211 12357888888888877664211 12345788888888874 554322 11222233
Q ss_pred CcEEEeeCCCCC
Q 037671 166 LESINVWGTRLP 177 (187)
Q Consensus 166 L~~L~l~~~~i~ 177 (187)
|+.|++.+|.+.
T Consensus 105 L~~l~l~~N~~~ 116 (347)
T 2ifg_A 105 LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCC
T ss_pred ceEEEeeCCCcc
Confidence 888888888775
No 159
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.29 E-value=0.00018 Score=54.31 Aligned_cols=108 Identities=7% Similarity=-0.007 Sum_probs=58.6
Q ss_pred CCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEE-EecCCCCCHHHHHHHH
Q 037671 56 YSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGLTGITDKGVVQLISRASSLQHL-NIGGTFITDESLYAIA 134 (187)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~l~ 134 (187)
+++++|++++| .++.-....+ ..+++|+.|+++++. +....-......+++++.+ .++++.++.-. ....
T Consensus 30 ~~l~~L~Ls~N----~i~~i~~~~f---~~l~~L~~L~Ls~N~-i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f 100 (350)
T 4ay9_X 30 RNAIELRFVLT----KLRVIQKGAF---SGFGDLEKIEISQND-VLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAF 100 (350)
T ss_dssp TTCSEEEEESC----CCSEECTTSS---TTCTTCCEEEEECCT-TCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSB
T ss_pred CCCCEEEccCC----cCCCcCHHHH---cCCCCCCEEECcCCC-CCCccChhHhhcchhhhhhhcccCCcccccC-chhh
Confidence 57999999977 3432211111 236889999998875 3221000112345666654 44445554210 0123
Q ss_pred hcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC
Q 037671 135 NSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT 174 (187)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 174 (187)
..+++|++|+++++ .++...-.. .....++..|++.++
T Consensus 101 ~~l~~L~~L~l~~n-~l~~~~~~~-~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 101 QNLPNLQYLLISNT-GIKHLPDVH-KIHSLQKVLLDIQDN 138 (350)
T ss_dssp CCCTTCCEEEEEEE-CCSSCCCCT-TCCBSSCEEEEEESC
T ss_pred hhcccccccccccc-ccccCCchh-hcccchhhhhhhccc
Confidence 56788999999885 443222111 112456778888764
No 160
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.98 E-value=0.0015 Score=50.45 Aligned_cols=32 Identities=22% Similarity=0.511 Sum_probs=26.8
Q ss_pred CccccccchhHHHHHHHhhHHHHHHhh-hhhccc
Q 037671 1 FLFVFVIPFVCLLRVSSVCKKWKLGVK-QSLARR 33 (187)
Q Consensus 1 ~I~~~l~~~~~~~~~~~vck~w~~~~~-~~l~~~ 33 (187)
+||+||+ .++++++++|||+|++++. +.+|+.
T Consensus 29 ~i~~~l~-~~~l~~~~~v~~~~~~~~~~~~~w~~ 61 (445)
T 2ovr_B 29 YVLSFLE-PKDLLQAAQTCRYWRILAEDNLLWRE 61 (445)
T ss_dssp HHHTTSC-HHHHHHHTTSCHHHHHHHTCSHHHHH
T ss_pred HHHHhCC-HHHHHHHHHHhHHHHhhcCchhHhhh
Confidence 4899999 5999999999999999774 456654
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.76 E-value=0.028 Score=42.86 Aligned_cols=103 Identities=22% Similarity=0.266 Sum_probs=50.7
Q ss_pred hcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCC-CCCCHHHHHHHHhcCCCCCEEEecC--CCCCHHH
Q 037671 53 GYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGL-TGITDKGVVQLISRASSLQHLNIGG--TFITDES 129 (187)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~ 129 (187)
..|..|+.+.+.... ..+.+... ..|+.|+.+.++.. ..+++.. ...|.+|+.+.+.. ..+.+..
T Consensus 262 ~~c~~L~~i~lp~~~--~~I~~~aF------~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~a 329 (394)
T 4gt6_A 262 DSCAYLASVKMPDSV--VSIGTGAF------MNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEGITQILDDA 329 (394)
T ss_dssp TTCSSCCEEECCTTC--CEECTTTT------TTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTT
T ss_pred eecccccEEeccccc--ceecCccc------ccccccccccCCCcccccCcee----ecCCCCcCEEEeCCcccEehHhH
Confidence 445667777665321 11222111 23666777776432 1122222 23467777777755 2333322
Q ss_pred HHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCC
Q 037671 130 LYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGT 174 (187)
Q Consensus 130 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 174 (187)
...|.+|+++.+.. .++.-+-. -+.+|++|+.+++.++
T Consensus 330 ----F~~C~~L~~i~ip~--sv~~I~~~-aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 330 ----FAGCEQLERIAIPS--SVTKIPES-AFSNCTALNNIEYSGS 367 (394)
T ss_dssp ----TTTCTTCCEEEECT--TCCBCCGG-GGTTCTTCCEEEESSC
T ss_pred ----hhCCCCCCEEEECc--ccCEEhHh-HhhCCCCCCEEEECCc
Confidence 24567777777743 22222211 1346777777777665
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.24 E-value=0.068 Score=40.74 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=59.3
Q ss_pred HhcCCCCcEEEeeeccCCcccchhhhhhhhhhccCCCccEEEecCC-CCCCHHHHHHHHhcCCCCCEEEecC--CCCCHH
Q 037671 52 VGYAYSLKELEISRSRWGCQITDNGLYRMSFAKCISNLTSISLWGL-TGITDKGVVQLISRASSLQHLNIGG--TFITDE 128 (187)
Q Consensus 52 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~ 128 (187)
+..++.|+.+.+.... ..+.+..+ ..|.+|+.++++.. ..+.+.+ ...|.+|+.+.+.. ..+.+.
T Consensus 284 F~~c~~L~~i~l~~~i--~~I~~~aF------~~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~sv~~I~~~ 351 (394)
T 4gt6_A 284 FMNCPALQDIEFSSRI--TELPESVF------AGCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSSVTKIPES 351 (394)
T ss_dssp TTTCTTCCEEECCTTC--CEECTTTT------TTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTTCCBCCGG
T ss_pred cccccccccccCCCcc--cccCceee------cCCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcccCEEhHh
Confidence 3457889999886421 12333332 34899999999643 2233332 24689999999976 355553
Q ss_pred HHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCCC
Q 037671 129 SLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTRL 176 (187)
Q Consensus 129 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i 176 (187)
+ ...|++|+.+++.+. . ..... ...|..|+.+.+..+.+
T Consensus 352 a----F~~C~~L~~i~~~~~-~---~~~~~-~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 352 A----FSNCTALNNIEYSGS-R---SQWNA-ISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp G----GTTCTTCCEEEESSC-H---HHHHT-CBCCCCC----------
T ss_pred H----hhCCCCCCEEEECCc-e---eehhh-hhccCCCCEEEeCCCCE
Confidence 3 356999999999863 1 12222 34688899998876543
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=92.83 E-value=0.062 Score=41.29 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=28.5
Q ss_pred cCCCCCEEEecC--CCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhcCCCCcEEEeeCCC
Q 037671 111 RASSLQHLNIGG--TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNKCGRLESINVWGTR 175 (187)
Q Consensus 111 ~~~~L~~L~l~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 175 (187)
.|++|+.+.+.. ..+.+. ...+|+.|+.+.+.. .++.-+-.+ +.+| +|+.+++.++.
T Consensus 298 ~c~~L~~l~l~~~i~~I~~~----aF~~c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 298 GCPKLARFEIPESIRILGQG----LLGGNRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TCTTCCEECCCTTCCEECTT----TTTTCCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEECCSS
T ss_pred CCccCCeEEeCCceEEEhhh----hhcCCCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEcCCC
Confidence 456666666654 122221 123466677776643 233222111 2356 77777777664
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=92.45 E-value=0.03 Score=43.05 Aligned_cols=13 Identities=38% Similarity=0.784 Sum_probs=7.8
Q ss_pred hcCCCCcEEEeee
Q 037671 53 GYAYSLKELEISR 65 (187)
Q Consensus 53 ~~~~~L~~L~l~~ 65 (187)
..|++|+.+++..
T Consensus 177 ~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 177 YYCYNLKKADLSK 189 (401)
T ss_dssp TTCTTCCEEECTT
T ss_pred hCcccCCeeecCC
Confidence 3456666666654
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.04 E-value=0.038 Score=41.78 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=40.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCC---CCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHhc
Q 037671 86 ISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGGTF---ITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVNK 162 (187)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 162 (187)
|.+|+.+.++.. +...+- .....|.+|+.+.+.++. +.+. ....|.+|+.+.+.. .++.-+-.+ +.+
T Consensus 262 ~~~l~~i~l~~~--i~~i~~-~aF~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp~--~l~~I~~~a-F~~ 331 (379)
T 4h09_A 262 CTALKTLNFYAK--VKTVPY-LLCSGCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLPT--ALKTIQVYA-FKN 331 (379)
T ss_dssp CTTCCEEEECCC--CSEECT-TTTTTCTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECCT--TCCEECTTT-TTT
T ss_pred eehhcccccccc--ceeccc-cccccccccccccccccccceehhh----hhcCCCCCCEEEcCc--cccEEHHHH-hhC
Confidence 556666666432 211111 112346778888776543 3332 224577788888753 232222111 346
Q ss_pred CCCCcEEEeeCC
Q 037671 163 CGRLESINVWGT 174 (187)
Q Consensus 163 ~~~L~~L~l~~~ 174 (187)
|++|+++.+..+
T Consensus 332 C~~L~~i~ip~~ 343 (379)
T 4h09_A 332 CKALSTISYPKS 343 (379)
T ss_dssp CTTCCCCCCCTT
T ss_pred CCCCCEEEECCc
Confidence 777777777543
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=88.91 E-value=0.061 Score=40.99 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=45.3
Q ss_pred cCCCccEEEecCC-CCCCHHHHHHHHhcCCCCCEEEecC--CCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHh
Q 037671 85 CISNLTSISLWGL-TGITDKGVVQLISRASSLQHLNIGG--TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVN 161 (187)
Q Consensus 85 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 161 (187)
.|.+|+.+.++.. ..+.+.+ ...|.+|+.+++.. ..+.+.+ ...|.+|+.+.+... ++.-+-. .+.
T Consensus 295 ~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~a----F~~c~~L~~i~lp~~--l~~I~~~-aF~ 363 (394)
T 4fs7_A 295 GCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPYLVEEIGKRS----FRGCTSLSNINFPLS--LRKIGAN-AFQ 363 (394)
T ss_dssp TCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCTTCCEECTTT----TTTCTTCCEECCCTT--CCEECTT-TBT
T ss_pred ccccccccccccccceechhh----hcCCCCCCEEEeCCcccEEhHHh----ccCCCCCCEEEECcc--ccEehHH-Hhh
Confidence 4677888887532 1222222 23477888888865 2333322 245778888888642 3322211 235
Q ss_pred cCCCCcEEEeeCC
Q 037671 162 KCGRLESINVWGT 174 (187)
Q Consensus 162 ~~~~L~~L~l~~~ 174 (187)
+|++|+.+++..+
T Consensus 364 ~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 364 GCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEEEEEGG
T ss_pred CCCCCCEEEECCC
Confidence 6888888888654
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=87.70 E-value=0.18 Score=38.40 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=14.2
Q ss_pred CCCCCEEEecCC--CCCHHHHHHHHhcCCccceeecc
Q 037671 112 ASSLQHLNIGGT--FITDESLYAIANSCPQLKSIVLW 146 (187)
Q Consensus 112 ~~~L~~L~l~~~--~~~~~~~~~l~~~~~~L~~L~l~ 146 (187)
|.+|+.+.+..+ .+.+.. ...|++|+++++.
T Consensus 342 c~~L~~i~lp~~l~~I~~~a----F~~C~~L~~i~lp 374 (394)
T 4fs7_A 342 CTSLSNINFPLSLRKIGANA----FQGCINLKKVELP 374 (394)
T ss_dssp CTTCCEECCCTTCCEECTTT----BTTCTTCCEEEEE
T ss_pred CCCCCEEEECccccEehHHH----hhCCCCCCEEEEC
Confidence 555555555441 222211 2345555555554
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=84.40 E-value=0.31 Score=36.74 Aligned_cols=89 Identities=17% Similarity=0.279 Sum_probs=53.7
Q ss_pred ccCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEecC--CCCCHHHHHHHHhcCCccceeeccCCCCCcHHHHHHHHh
Q 037671 84 KCISNLTSISLWGLTGITDKGVVQLISRASSLQHLNIGG--TFITDESLYAIANSCPQLKSIVLWSCRQVTGNGLLFLVN 161 (187)
Q Consensus 84 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 161 (187)
..|..|+.+.++.. ++..+-. ....|.+|+.+.+.. ..+.. .....|++|+++.+..+ .++.-+- ..+.
T Consensus 237 ~~~~~L~~i~lp~~--v~~I~~~-aF~~~~~l~~i~l~~~i~~i~~----~aF~~c~~L~~i~l~~~-~i~~I~~-~aF~ 307 (379)
T 4h09_A 237 YGMKALDEIAIPKN--VTSIGSF-LLQNCTALKTLNFYAKVKTVPY----LLCSGCSNLTKVVMDNS-AIETLEP-RVFM 307 (379)
T ss_dssp TTCSSCCEEEECTT--CCEECTT-TTTTCTTCCEEEECCCCSEECT----TTTTTCTTCCEEEECCT-TCCEECT-TTTT
T ss_pred cCCccceEEEcCCC--ccEeCcc-ccceeehhccccccccceeccc----ccccccccccccccccc-ccceehh-hhhc
Confidence 34778888888643 2221111 223578899999876 23333 22356899999999753 3332221 1245
Q ss_pred cCCCCcEEEeeCC--CCCHHHH
Q 037671 162 KCGRLESINVWGT--RLPLDCF 181 (187)
Q Consensus 162 ~~~~L~~L~l~~~--~i~~~~~ 181 (187)
+|.+|+.+.+..+ .|.+.++
T Consensus 308 ~c~~L~~i~lp~~l~~I~~~aF 329 (379)
T 4h09_A 308 DCVKLSSVTLPTALKTIQVYAF 329 (379)
T ss_dssp TCTTCCEEECCTTCCEECTTTT
T ss_pred CCCCCCEEEcCccccEEHHHHh
Confidence 7999999999764 4444443
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=81.33 E-value=0.74 Score=29.22 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=23.4
Q ss_pred CCCCEEEecCCCCCHHHHHHHHhcCCccceeeccCCCC
Q 037671 113 SSLQHLNIGGTFITDESLYAIANSCPQLKSIVLWSCRQ 150 (187)
Q Consensus 113 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 150 (187)
++|+.|+|++|.++.-. ......++.|++|+|.+++-
T Consensus 31 ~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCe
Confidence 46888888887655311 12234577888888877543
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.17 E-value=56 Score=19.31 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=22.3
Q ss_pred ccCCCccEEEecCC-CCCCHHHHHHHHhcCCCCCEEEecC
Q 037671 84 KCISNLTSISLWGL-TGITDKGVVQLISRASSLQHLNIGG 122 (187)
Q Consensus 84 ~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~ 122 (187)
..|.+|+++.|+.. ..+.+..+ ..|.+|+.+.+.+
T Consensus 17 ~~c~~L~~i~iP~~v~~Ig~~aF----~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 17 AGNTVIREITVQPNIGLLYDGMF----SGCTALEKLILTG 52 (100)
T ss_dssp TTCTTCCCEEECTTSSCCCTTSS----TTCTTCCCEEECC
T ss_pred cCCCCCcEEEcCCchheEcHHHH----hccCCccEEEEcC
Confidence 34778888888643 23444333 4578888888877
Done!