BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037672
(84 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 1 LITNDKFKSAYHRVLSKKEGSRISIESFFMNNSCSRQYGPIKELL---SEENPPLYPEIT 57
+ITN K+KS HRV+++K+G+R S+ SF+ S + Y P L+ +EEN +YP+
Sbjct: 223 VITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIY-PAPALVEKEAEENKQVYPKFV 281
Query: 58 LKD 60
D
Sbjct: 282 FDD 284
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 1 LITNDKFKSAYHRVLSKKEGSRISIESFFMNNSCSRQYGPIKELLSEENPPLYPEITL 58
+++N K+KS HR L KE RIS F P+ E++S E+P +P T
Sbjct: 276 ILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTF 333
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 1 LITNDKFKSAYHRVLSKKEGSRISIESFFMNNSCSRQYGPIKELLSEENPPLYPEITL 58
+++N K+KS HR L KE RIS F P+ E++S E+P +P T
Sbjct: 277 ILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTF 334
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 1 LITNDKFKSAYHRVLSKKEGSRISIESFFMNNSCSRQYGPIKELLSEENPPLYPEITL 58
+++N K+KS HR L KE RIS F P+ E +S E+P +P T
Sbjct: 277 ILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTF 334
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 2 ITNDKFKSAYHRVLS---KKEGSRISIESFFMNNSCSRQYGPIKELLSEENPPLYPEITL 58
+TN+ S HRV++ ++ G FF++ + + ++ ++ ENP YPE
Sbjct: 238 LTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESIT 297
Query: 59 KDIYNNQ 65
D + Q
Sbjct: 298 ADEFLQQ 304
>pdb|1Y1X|A Chain A, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
pdb|1Y1X|B Chain B, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
Length = 191
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 2 ITNDKFKSAYHRVLSKKEGSR 22
IT D+FK +H +LS +EG R
Sbjct: 80 ITFDEFKDLHHFILSMREGFR 100
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 29 FMNNSCSRQYGPIKELLSEENPPLYP 54
F S S YG ++E+ +E P YP
Sbjct: 151 FYQASTSELYGKVQEIPQKETTPFYP 176
>pdb|3FY6|A Chain A, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass3
pdb|3FY6|B Chain B, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass3
pdb|3FY6|C Chain C, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass3
pdb|3FY6|D Chain D, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass3
Length = 126
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 41 IKELLSEENPPLYPEITLKDIYNNQS 66
IK SE P + E TL+DI NN S
Sbjct: 45 IKATYSENQDPEWSEETLQDIXNNDS 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.132 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,381,152
Number of Sequences: 62578
Number of extensions: 78135
Number of successful extensions: 130
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 10
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)