Query 037672
Match_columns 84
No_of_seqs 117 out of 1048
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:47:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w9y_A 1-aminocyclopropane-1-c 99.9 6.6E-23 2.3E-27 147.2 3.7 78 1-79 223-306 (319)
2 1gp6_A Leucoanthocyanidin diox 99.8 7.8E-22 2.7E-26 143.3 4.5 69 1-70 277-348 (356)
3 3oox_A Putative 2OG-Fe(II) oxy 99.8 6.9E-21 2.4E-25 135.9 4.9 60 1-61 237-301 (312)
4 1odm_A Isopenicillin N synthas 99.8 2.6E-19 8.8E-24 128.8 5.6 58 1-61 259-316 (331)
5 1dcs_A Deacetoxycephalosporin 99.8 1.3E-19 4.4E-24 129.5 3.0 59 1-61 232-297 (311)
6 3on7_A Oxidoreductase, iron/as 99.5 6.5E-15 2.2E-19 103.9 3.5 46 1-61 220-269 (280)
7 2rg4_A Uncharacterized protein 73.9 2.4 8.1E-05 28.2 2.8 23 10-32 185-208 (216)
8 2vf9_A Coat protein; virion, R 65.9 1.7 5.7E-05 26.5 0.6 13 3-15 53-65 (131)
9 3dl3_A Tellurite resistance pr 52.6 8.3 0.00028 23.8 2.1 23 9-32 79-101 (119)
10 3bb6_A Uncharacterized protein 34.0 23 0.0008 22.0 2.0 24 9-32 80-103 (127)
11 3plx_A Aspartate 1-decarboxyla 24.9 23 0.00079 16.3 0.6 12 6-17 8-19 (27)
12 2hbt_A EGL nine homolog 1; pro 24.0 61 0.0021 21.7 2.9 21 10-31 193-213 (247)
13 1vc3_A L-aspartate-alpha-decar 23.9 25 0.00085 16.0 0.6 12 6-17 5-16 (26)
14 1uhe_B Aspartate 1-decarboxyla 23.8 25 0.00085 16.0 0.6 12 6-17 5-16 (26)
No 1
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=99.86 E-value=6.6e-23 Score=147.22 Aligned_cols=78 Identities=32% Similarity=0.562 Sum_probs=63.3
Q ss_pred CeeCCeeecCCceeecCCCCCceeEEEeeecCCCCCeeecCccccCCC---CCCCCCcccHHHH--HHHhhcCCcccc-c
Q 037672 1 LITNDKFKSAYHRVLSKKEGSRISIESFFMNNSCSRQYGPIKELLSEE---NPPLYPEITLKDI--YNNQSSIEGLSA-L 74 (84)
Q Consensus 1 i~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~~d~~v~pl~~~~~~~---~p~~y~~~~~~ey--~~~~~~~~~~~~-l 74 (84)
+||||+|||++|||+++++++|+|+|||++|+. |++|.|+++|++++ +|++|++++++|| .+....+.++.. +
T Consensus 223 ~~SnG~~kS~~HRVv~~~~~~R~Sia~F~~p~~-d~~i~pl~~l~~~~~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~ 301 (319)
T 1w9y_A 223 VITNGKYKSVMHRVIAQKDGARMSLASFYNPGS-DAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEPRF 301 (319)
T ss_dssp HHTTTSSCCCCEEECCCSSSCCEEEEEEEECCT-TCEECCCGGGC--------CCCCCEEHHHHHHTTTTTTCSSHHHHH
T ss_pred HHhCCeeecccceecCCCCCCceEEEEEecCCC-CCeEeCchhhcCcccccCccccCcEeHHHHHHHHHhhhcCcchhHH
Confidence 599999999999999999999999999999995 99999999999887 5999999999999 334455556554 6
Q ss_pred ccccc
Q 037672 75 EKLKL 79 (84)
Q Consensus 75 ~~~~~ 79 (84)
+.+|+
T Consensus 302 ~~~~~ 306 (319)
T 1w9y_A 302 EAMKA 306 (319)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 2
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=99.84 E-value=7.8e-22 Score=143.29 Aligned_cols=69 Identities=29% Similarity=0.406 Sum_probs=61.7
Q ss_pred CeeCCeeecCCceeecCCCCCceeEEEeeecCCCCC-eeecCccccCCCCCCCCCcccHHHH--HHHhhcCCc
Q 037672 1 LITNDKFKSAYHRVLSKKEGSRISIESFFMNNSCSR-QYGPIKELLSEENPPLYPEITLKDI--YNNQSSIEG 70 (84)
Q Consensus 1 i~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~~d~-~v~pl~~~~~~~~p~~y~~~~~~ey--~~~~~~~~~ 70 (84)
+||||+|||++|||+++++++|+|+|||++|+. |+ +|+|+++|+++++|++|++++++|| .+...++++
T Consensus 277 ~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~-d~~~i~pl~~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~ 348 (356)
T 1gp6_A 277 ILSNGKYKSILHRGLVNKEKVRISWAVFCEPPK-DKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQE 348 (356)
T ss_dssp HHTTTSSCCCCEEECCCSSCCEEEEEEEEECCT-TTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHHHHHHH
T ss_pred HhcCCEeeccCceecCCCCCCEEEEEEeecCCC-CCcEEeCChhhcCCCCCccCCCccHHHHHHHHHHhccCc
Confidence 599999999999999999999999999999995 99 9999999999999999999999999 334444444
No 3
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=99.82 E-value=6.9e-21 Score=135.94 Aligned_cols=60 Identities=28% Similarity=0.413 Sum_probs=56.0
Q ss_pred CeeCCeeecCCceeecCC----CCCceeEEEeeecCCCCCeeecCccccCCCCCCCCC-cccHHHH
Q 037672 1 LITNDKFKSAYHRVLSKK----EGSRISIESFFMNNSCSRQYGPIKELLSEENPPLYP-EITLKDI 61 (84)
Q Consensus 1 i~SNG~~kS~~HRVv~~~----~~~R~Sia~F~~P~~~d~~v~pl~~~~~~~~p~~y~-~~~~~ey 61 (84)
+||||+|||+.|||++++ ..+|||+|||++|+. |++|+|+++|+++++|++|+ +++++||
T Consensus 237 ~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~-d~~i~pl~~~v~~~~p~~y~~~~t~~ey 301 (312)
T 3oox_A 237 RLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFAS-DYEIKTLQNCVTAENPDRYPESITADEF 301 (312)
T ss_dssp HHTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCT-TCEECCCGGGCCSSSCCSCSSCEEHHHH
T ss_pred HHhCCeecCCCceEeCCCccCCCCCEEEEEEEecCCC-CcEEecCccccCCCCcccCCCCeeHHHH
Confidence 599999999999998764 567999999999995 99999999999999999999 9999999
No 4
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=99.77 E-value=2.6e-19 Score=128.78 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=54.2
Q ss_pred CeeCCeeecCCceeecCCCCCceeEEEeeecCCCCCeeecCccccCCCCCCCCCcccHHHH
Q 037672 1 LITNDKFKSAYHRVLSKKEGSRISIESFFMNNSCSRQYGPIKELLSEENPPLYPEITLKDI 61 (84)
Q Consensus 1 i~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~~d~~v~pl~~~~~~~~p~~y~~~~~~ey 61 (84)
+||||+|||+.|||++ +.++|+|+|||++|+. |++|+|+++++++++ ++|++++++||
T Consensus 259 ~~TnG~~kS~~HRVv~-~~~~R~Sia~F~~P~~-d~~i~pl~~~~~~~~-~~y~~~t~~e~ 316 (331)
T 1odm_A 259 HLTNNYYKAPIHRVKW-VNAERQSLPFFVNLGY-DSVIDPFDPREPNGK-SDREPLSYGDY 316 (331)
T ss_dssp HHTTTSSCCCCEEEEC-CCSCEEEEEEEECCCT-TCBCCCCCTTSTTCC-CSSCCCBHHHH
T ss_pred HHhCCEeeCCCceeCC-CCCCEEEEEEEEcCCC-CCEEeCCCccccccc-cCCCCccHHHH
Confidence 5999999999999986 4889999999999995 999999999998877 89999999999
No 5
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=99.76 E-value=1.3e-19 Score=129.50 Aligned_cols=59 Identities=20% Similarity=0.198 Sum_probs=55.2
Q ss_pred CeeCCeeecCCceeecCC-----CCCceeEEEeeecCCCCCeeecCccccCCCCCCCC--CcccHHHH
Q 037672 1 LITNDKFKSAYHRVLSKK-----EGSRISIESFFMNNSCSRQYGPIKELLSEENPPLY--PEITLKDI 61 (84)
Q Consensus 1 i~SNG~~kS~~HRVv~~~-----~~~R~Sia~F~~P~~~d~~v~pl~~~~~~~~p~~y--~~~~~~ey 61 (84)
+||||+|||+.|||++++ .++|+|+|||++|+. |++|. +++++++++|++| ++++++||
T Consensus 232 ~~TnG~~kS~~HRVv~~~~~~~~~~~R~Si~~F~~p~~-d~~i~-l~~~~~~~~p~~y~~~~~t~~ey 297 (311)
T 1dcs_A 232 LVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNA-DFTFS-VPLARECGFDVSLDGETATFQDW 297 (311)
T ss_dssp HHTTSCSCCCCEEECCC----CTTCCEEEEEEEECCCT-TCEEE-HHHHHHTTCCCCCCSSEEEHHHH
T ss_pred HHhCCcccCCCceEeCCCcccCCCCCeEEEEEEEcCCC-CcEEe-CCcccCCCCccccCCCCccHHHH
Confidence 599999999999999987 789999999999995 99999 9999988899999 99999999
No 6
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=99.51 E-value=6.5e-15 Score=103.92 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=40.8
Q ss_pred CeeCCeeecCCceeecCC----CCCceeEEEeeecCCCCCeeecCccccCCCCCCCCCcccHHHH
Q 037672 1 LITNDKFKSAYHRVLSKK----EGSRISIESFFMNNSCSRQYGPIKELLSEENPPLYPEITLKDI 61 (84)
Q Consensus 1 i~SNG~~kS~~HRVv~~~----~~~R~Sia~F~~P~~~d~~v~pl~~~~~~~~p~~y~~~~~~ey 61 (84)
+||||+|||+.|||++++ .++|||+|||++|+. |++|.| +++++||
T Consensus 220 ~~Tng~~kS~~HRVv~~~~~~~~~~R~Si~~F~~P~~-d~~i~p--------------~ita~~~ 269 (280)
T 3on7_A 220 EASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHP-SVVLSE--------------RYTADSY 269 (280)
T ss_dssp HHTTTSSCCCCEEEECCTTCCTTSCEEECCEEECCCT-TCBCSS--------------SCBHHHH
T ss_pred HHhCCcccCCCceEeCCCCCCCCCCeEEEEEEEcCCC-CCEECC--------------CccHHHH
Confidence 599999999999999874 568999999999995 899874 4899999
No 7
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=73.93 E-value=2.4 Score=28.24 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=17.9
Q ss_pred CCceeecCC-CCCceeEEEeeecC
Q 037672 10 AYHRVLSKK-EGSRISIESFFMNN 32 (84)
Q Consensus 10 ~~HRVv~~~-~~~R~Sia~F~~P~ 32 (84)
-.|.|..+. +.+|+||+|.+.+.
T Consensus 185 l~H~V~p~~~~~~RiSIsFN~~~~ 208 (216)
T 2rg4_A 185 LRHEVPMNMAEEDRISVSFNYAWG 208 (216)
T ss_dssp SCEEECCCCSSSCEEEEEEEEEC-
T ss_pred CEEeccCCCCCCCEEEEEEEeecC
Confidence 468888765 47999999999886
No 8
>2vf9_A Coat protein; virion, RNA-binding, capsid protein, structural protein, virus; 3.50A {Bacteriophage PRR1}
Probab=65.90 E-value=1.7 Score=26.48 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=11.5
Q ss_pred eCCeeecCCceee
Q 037672 3 TNDKFKSAYHRVL 15 (84)
Q Consensus 3 SNG~~kS~~HRVv 15 (84)
|||+|||++.-|+
T Consensus 53 sngrykstlklvv 65 (131)
T 2vf9_A 53 SNGRYKSTLKLVV 65 (131)
T ss_dssp TTSEEEEEEEEEE
T ss_pred CCCceeeeEEEEE
Confidence 7999999998765
No 9
>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13
Probab=52.58 E-value=8.3 Score=23.81 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=19.6
Q ss_pred cCCceeecCCCCCceeEEEeeecC
Q 037672 9 SAYHRVLSKKEGSRISIESFFMNN 32 (84)
Q Consensus 9 S~~HRVv~~~~~~R~Sia~F~~P~ 32 (84)
-.+|||. .++..|+-+-|+|.|.
T Consensus 79 q~wHrVe-~sdD~~f~leFyc~~~ 101 (119)
T 3dl3_A 79 QYWHRIE-LSDDAQFNINFWSDQD 101 (119)
T ss_dssp TCEEEEE-ECTTCEEEEEEEECC-
T ss_pred CceEEEE-ECCCeEEEEEEEECch
Confidence 4689999 7889999999999997
No 10
>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13
Probab=34.01 E-value=23 Score=22.00 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=21.0
Q ss_pred cCCceeecCCCCCceeEEEeeecC
Q 037672 9 SAYHRVLSKKEGSRISIESFFMNN 32 (84)
Q Consensus 9 S~~HRVv~~~~~~R~Sia~F~~P~ 32 (84)
-.+|||..-++..|+-+-||+.|.
T Consensus 80 q~wH~Ve~lsdd~~f~leFyc~~~ 103 (127)
T 3bb6_A 80 EKWHNIEAMTDDTYFNIDFFVAPE 103 (127)
T ss_dssp SCEEEEEESSTTCEEEEEEEECHH
T ss_pred CCcEEEEEcCCCEEEEEEEEeCCc
Confidence 468999987789999999999887
No 11
>3plx_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=24.88 E-value=23 Score=16.28 Aligned_cols=12 Identities=33% Similarity=0.335 Sum_probs=9.7
Q ss_pred eeecCCceeecC
Q 037672 6 KFKSAYHRVLSK 17 (84)
Q Consensus 6 ~~kS~~HRVv~~ 17 (84)
.+||=+||+.+.
T Consensus 8 ~LksKiHratVT 19 (27)
T 3plx_A 8 LLKSKIHRASVT 19 (27)
T ss_dssp EEEEEEEEEECC
T ss_pred HHHHhhhceEEe
Confidence 578889999875
No 12
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=24.01 E-value=61 Score=21.69 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=15.3
Q ss_pred CCceeecCCCCCceeEEEeeec
Q 037672 10 AYHRVLSKKEGSRISIESFFMN 31 (84)
Q Consensus 10 ~~HRVv~~~~~~R~Sia~F~~P 31 (84)
.+|.|.. ....|+||+..+.-
T Consensus 193 ~~H~V~p-~~~~R~sit~W~~~ 213 (247)
T 2hbt_A 193 NPHEVQP-AYATRYAITVWYFD 213 (247)
T ss_dssp CCEEECC-BSSCEEEEEEEEEE
T ss_pred ceeeecc-CCCEEEEEEEEEcC
Confidence 5888754 56799999876543
No 13
>1vc3_A L-aspartate-alpha-decarboxylase light chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_A
Probab=23.86 E-value=25 Score=16.03 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=9.6
Q ss_pred eeecCCceeecC
Q 037672 6 KFKSAYHRVLSK 17 (84)
Q Consensus 6 ~~kS~~HRVv~~ 17 (84)
.+||=+||+.+.
T Consensus 5 ~lksKiHratVT 16 (26)
T 1vc3_A 5 MFHAKIHRATVT 16 (26)
T ss_dssp EEEEEEEEEECC
T ss_pred HhhhhhcceEEe
Confidence 468889999875
No 14
>1uhe_B Aspartate 1-decarboxylase beta chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_B*
Probab=23.79 E-value=25 Score=16.02 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=9.5
Q ss_pred eeecCCceeecC
Q 037672 6 KFKSAYHRVLSK 17 (84)
Q Consensus 6 ~~kS~~HRVv~~ 17 (84)
.+||=+||+.+.
T Consensus 5 ~lksKiHratVT 16 (26)
T 1uhe_B 5 MLYSKIHRATIT 16 (26)
T ss_dssp EEEEEEEEEECC
T ss_pred HhhhhhcceEEe
Confidence 468889999875
Done!