BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037675
         (418 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des
 pdb|1ELQ|B Chain B, Crystal Structure Of The Cystine C-S Lyase C-Des
 pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C-Des And Its
           Reaction Product Cysteine Persulfide.
 pdb|1ELU|B Chain B, Complex Between The Cystine C-S Lyase C-Des And Its
           Reaction Product Cysteine Persulfide
          Length = 390

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 166 KLILRGCEPLPRRRCFAKSVPKVGLQSFPV 195
           + + RG   LP   C A S P+ GL SF V
Sbjct: 307 EFLWRGLNQLPHVHCLATSAPQAGLVSFTV 336


>pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The
           Plp-Cofactor
 pdb|1N2T|B Chain B, C-Des Mutant K223a With Gly Covalenty Linked To The
           Plp-Cofactor
 pdb|1N31|A Chain A, Structure Of A Catalytically Inactive Mutant (K223a) Of
           C-Des With A Substrate (Cystine) Linked To The Co-Factor
 pdb|1N31|B Chain B, Structure Of A Catalytically Inactive Mutant (K223a) Of
           C-Des With A Substrate (Cystine) Linked To The Co-Factor
          Length = 386

 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 166 KLILRGCEPLPRRRCFAKSVPKVGLQSFPV 195
           + + RG   LP   C A S P+ GL SF V
Sbjct: 303 EFLWRGLNQLPHVHCLATSAPQAGLVSFTV 332


>pdb|4EGC|B Chain B, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
           Eya2 Eya Domain
          Length = 294

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 359 GGLFWLDNFYCANDE-KKSALTRLIERFGYKKLKWVVGEKGE 399
           G +F ++N Y A    K+S   R+++RFG K +  V+G+  E
Sbjct: 220 GSVFPIENIYSATKTGKESCFERIMQRFGRKAVYVVIGDGVE 261


>pdb|4NOS|A Chain A, Human Inducible Nitric Oxide Synthase With Inhibitor
 pdb|4NOS|B Chain B, Human Inducible Nitric Oxide Synthase With Inhibitor
 pdb|4NOS|C Chain C, Human Inducible Nitric Oxide Synthase With Inhibitor
 pdb|4NOS|D Chain D, Human Inducible Nitric Oxide Synthase With Inhibitor
          Length = 427

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 17/79 (21%)

Query: 98  DLSRPNIASEL--KLFLQHHQLP-LGKDSRTGITEMVASVGHSCEK----------SADL 144
           D+ R NI  E+  ++ L+ H+L  L KD    + E+  +V HS +K          +A+ 
Sbjct: 304 DVQRYNILEEVGRRMGLETHKLASLWKDQ--AVVEINIAVIHSFQKQNVTIMDHHSAAES 361

Query: 145 LTQYMT--YKLSGPCPDDW 161
             +YM   Y+  G CP DW
Sbjct: 362 FMKYMQNEYRSRGGCPADW 380


>pdb|3HB0|A Chain A, Structure Of Edeya2 Complexed With Bef3
 pdb|3HB0|B Chain B, Structure Of Edeya2 Complexed With Bef3
 pdb|3HB0|C Chain C, Structure Of Edeya2 Complexed With Bef3
 pdb|3HB0|D Chain D, Structure Of Edeya2 Complexed With Bef3
 pdb|3HB1|A Chain A, Crystal Structure Of Ed-Eya2 Complexed With Alf3
 pdb|3HB1|B Chain B, Crystal Structure Of Ed-Eya2 Complexed With Alf3
 pdb|3HB1|C Chain C, Crystal Structure Of Ed-Eya2 Complexed With Alf3
 pdb|3HB1|D Chain D, Crystal Structure Of Ed-Eya2 Complexed With Alf3
          Length = 274

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 359 GGLFWLDNFYCANDE-KKSALTRLIERFGYKKLKWVVGEKGE 399
           G +F ++N Y A    K+S   R+++RFG K +  V+G+  E
Sbjct: 200 GSVFPIENIYSATKTGKESCFERIMQRFGRKAVYVVIGDGVE 241


>pdb|3GEB|A Chain A, Crystal Structure Of Edeya2
 pdb|3GEB|B Chain B, Crystal Structure Of Edeya2
 pdb|3GEB|C Chain C, Crystal Structure Of Edeya2
 pdb|3GEB|D Chain D, Crystal Structure Of Edeya2
          Length = 274

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 359 GGLFWLDNFYCANDE-KKSALTRLIERFGYKKLKWVVGEKGE 399
           G +F ++N Y A    K+S   R+++RFG K +  V+G+  E
Sbjct: 200 GSVFPIENIYSATKTGKESCFERIMQRFGRKAVYVVIGDGVE 241


>pdb|3E7G|A Chain A, Structure Of Human Inosox With Inhibitor Ar-C95791
 pdb|3E7G|B Chain B, Structure Of Human Inosox With Inhibitor Ar-C95791
 pdb|3E7G|C Chain C, Structure Of Human Inosox With Inhibitor Ar-C95791
 pdb|3E7G|D Chain D, Structure Of Human Inosox With Inhibitor Ar-C95791
          Length = 424

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 17/79 (21%)

Query: 98  DLSRPNIASEL--KLFLQHHQLP-LGKDSRTGITEMVASVGHSCEK----------SADL 144
           D+ R NI  E+  ++ L+ H+L  L KD    + E+  +V HS +K          +A+ 
Sbjct: 304 DVQRYNILEEVGRRMGLETHKLASLWKDQ--AVVEINIAVLHSFQKQNVTIMDHHSAAES 361

Query: 145 LTQYMT--YKLSGPCPDDW 161
             +YM   Y+  G CP DW
Sbjct: 362 FMKYMQNEYRSRGGCPADW 380


>pdb|3EJ8|A Chain A, Structure Of Double Mutant Of Human Inos Oxygenase Domain
           With Bound Immidazole
 pdb|3EJ8|B Chain B, Structure Of Double Mutant Of Human Inos Oxygenase Domain
           With Bound Immidazole
 pdb|3EJ8|C Chain C, Structure Of Double Mutant Of Human Inos Oxygenase Domain
           With Bound Immidazole
 pdb|3EJ8|D Chain D, Structure Of Double Mutant Of Human Inos Oxygenase Domain
           With Bound Immidazole
          Length = 424

 Score = 29.3 bits (64), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 17/79 (21%)

Query: 98  DLSRPNIASEL--KLFLQHHQLP-LGKDSRTGITEMVASVGHSCEK----------SADL 144
           D+ R NI  E+  ++ L+ H+L  L KD    + E+  +V HS +K          +A+ 
Sbjct: 304 DVQRYNILEEVGRRMGLETHKLASLWKDQ--AVVEINIAVLHSFQKQNVTIMDHHSAAES 361

Query: 145 LTQYMT--YKLSGPCPDDW 161
             +YM   Y+  G CP DW
Sbjct: 362 FMKYMQNEYRSRGGCPADW 380


>pdb|1NSI|A Chain A, Human Inducible Nitric Oxide Synthase, Zn-Bound, L-Arg
           Complex
 pdb|1NSI|B Chain B, Human Inducible Nitric Oxide Synthase, Zn-Bound, L-Arg
           Complex
 pdb|1NSI|C Chain C, Human Inducible Nitric Oxide Synthase, Zn-Bound, L-Arg
           Complex
 pdb|1NSI|D Chain D, Human Inducible Nitric Oxide Synthase, Zn-Bound, L-Arg
           Complex
 pdb|2NSI|A Chain A, Human Inducible Nitric Oxide Synthase, Zn-free, Seitu
           Complex
 pdb|2NSI|B Chain B, Human Inducible Nitric Oxide Synthase, Zn-free, Seitu
           Complex
 pdb|2NSI|C Chain C, Human Inducible Nitric Oxide Synthase, Zn-free, Seitu
           Complex
 pdb|2NSI|D Chain D, Human Inducible Nitric Oxide Synthase, Zn-free, Seitu
           Complex
          Length = 431

 Score = 29.3 bits (64), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 17/79 (21%)

Query: 98  DLSRPNIASEL--KLFLQHHQLP-LGKDSRTGITEMVASVGHSCEK----------SADL 144
           D+ R NI  E+  ++ L+ H+L  L KD    + E+  +V HS +K          +A+ 
Sbjct: 312 DVQRYNILEEVGRRMGLETHKLASLWKDQ--AVVEINIAVLHSFQKQNVTIMDHHSAAES 369

Query: 145 LTQYMT--YKLSGPCPDDW 161
             +YM   Y+  G CP DW
Sbjct: 370 FMKYMQNEYRSRGGCPADW 388


>pdb|3T6G|B Chain B, Structure Of The Complex Between Nsp3 (Shep1) And P130cas
 pdb|3T6G|D Chain D, Structure Of The Complex Between Nsp3 (Shep1) And P130cas
          Length = 229

 Score = 28.5 bits (62), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 34  VTTNLFALYAFTSSPKDGQIHSLIHNHKNISLISEHVSLILKEIDSSQKKLAKMEKELLG 93
           +TT   A+ AF ++    Q   +   H    ++S H  + + +  S Q K A +  ++  
Sbjct: 112 LTTLTNAVDAFFTAVATNQPPKIFVAHSKFVILSAHKLVFIGDTLSRQAKAADVRSQVTH 171

Query: 94  YQSI--DLSRPNIASELKLFLQHHQLPLGKDSRTGITEMVASVGHSCEKSADLLTQ 147
           Y ++  DL R  +A+     LQ+      +D    + E V  +GHS ++   +L Q
Sbjct: 172 YSNLLCDLLRGIVATTKAAALQYPSPSAAQD----MVERVKELGHSTQQFRRVLGQ 223


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,699,531
Number of Sequences: 62578
Number of extensions: 458742
Number of successful extensions: 1122
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1120
Number of HSP's gapped (non-prelim): 13
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)