Query 037675
Match_columns 418
No_of_seqs 424 out of 2221
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 03:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 6.8E-51 1.5E-55 419.6 13.4 235 153-418 1-265 (506)
2 PF03141 Methyltransf_29: Puta 100.0 4.1E-31 8.8E-36 273.3 9.4 240 133-409 261-504 (506)
3 COG2226 UbiE Methylase involve 99.8 1.2E-17 2.7E-22 161.1 16.1 124 266-394 53-224 (238)
4 PF08241 Methyltransf_11: Meth 99.7 2.2E-17 4.9E-22 132.6 8.6 91 269-364 1-95 (95)
5 PF01209 Ubie_methyltran: ubiE 99.7 4.1E-17 8.9E-22 157.1 10.3 105 257-368 42-155 (233)
6 PLN02233 ubiquinone biosynthes 99.7 1.8E-16 4E-21 154.6 14.7 129 258-393 69-247 (261)
7 PLN02244 tocopherol O-methyltr 99.6 7.2E-15 1.6E-19 148.5 15.3 123 265-392 119-276 (340)
8 PF13489 Methyltransf_23: Meth 99.6 1E-14 2.3E-19 128.5 12.2 130 251-391 10-160 (161)
9 PRK14103 trans-aconitate 2-met 99.6 2.1E-14 4.6E-19 138.7 14.4 122 266-394 31-184 (255)
10 PTZ00098 phosphoethanolamine N 99.6 1.9E-14 4E-19 140.6 13.1 131 258-393 48-201 (263)
11 KOG1540 Ubiquinone biosynthesi 99.6 2.5E-14 5.5E-19 138.1 12.4 103 260-367 96-215 (296)
12 PRK10258 biotin biosynthesis p 99.5 2.4E-14 5.2E-19 137.6 11.2 100 264-368 42-142 (251)
13 PLN02396 hexaprenyldihydroxybe 99.5 2.9E-14 6.4E-19 143.5 12.0 121 266-391 133-286 (322)
14 PRK11036 putative S-adenosyl-L 99.5 4.8E-14 1E-18 136.4 12.7 124 265-393 45-206 (255)
15 TIGR02752 MenG_heptapren 2-hep 99.5 1.5E-13 3.2E-18 130.1 14.6 104 257-367 40-152 (231)
16 PRK15068 tRNA mo(5)U34 methylt 99.5 1.1E-13 2.5E-18 139.1 13.9 124 266-394 124-274 (322)
17 TIGR00452 methyltransferase, p 99.5 1.7E-13 3.7E-18 137.5 13.9 127 266-397 123-276 (314)
18 PRK11207 tellurite resistance 99.5 2.7E-13 5.9E-18 126.8 14.4 132 253-392 21-168 (197)
19 PLN02490 MPBQ/MSBQ methyltrans 99.5 2.7E-13 5.9E-18 137.4 15.3 146 266-416 115-283 (340)
20 PRK05785 hypothetical protein; 99.5 2.1E-13 4.6E-18 130.5 12.8 88 266-360 53-141 (226)
21 PF05401 NodS: Nodulation prot 99.5 6.5E-13 1.4E-17 124.6 15.2 174 239-418 15-201 (201)
22 PRK11873 arsM arsenite S-adeno 99.5 3.3E-13 7.1E-18 131.4 13.5 129 259-394 74-230 (272)
23 PLN02336 phosphoethanolamine N 99.5 3.3E-13 7.1E-18 141.5 14.1 122 266-392 268-412 (475)
24 PRK08317 hypothetical protein; 99.4 2.2E-12 4.8E-17 120.6 14.4 129 256-391 13-173 (241)
25 PF12847 Methyltransf_18: Meth 99.4 7.8E-13 1.7E-17 110.7 9.6 98 266-366 3-111 (112)
26 TIGR03587 Pse_Me-ase pseudamin 99.4 6.7E-12 1.4E-16 118.5 16.0 98 266-369 45-145 (204)
27 TIGR02072 BioC biotin biosynth 99.4 1.3E-12 2.9E-17 122.4 10.9 124 266-393 36-175 (240)
28 PRK01683 trans-aconitate 2-met 99.4 1.7E-12 3.6E-17 125.2 11.8 95 266-366 33-130 (258)
29 PRK15451 tRNA cmo(5)U34 methyl 99.4 3.1E-12 6.7E-17 123.6 13.1 98 266-368 58-166 (247)
30 smart00828 PKS_MT Methyltransf 99.4 2.8E-12 6.1E-17 120.8 11.8 122 267-394 2-144 (224)
31 PRK00216 ubiE ubiquinone/menaq 99.4 2.7E-11 5.9E-16 113.8 18.0 97 266-367 53-159 (239)
32 PF13649 Methyltransf_25: Meth 99.4 6.9E-13 1.5E-17 110.3 6.3 90 268-360 1-101 (101)
33 PRK12335 tellurite resistance 99.4 5.5E-12 1.2E-16 124.5 13.6 143 266-414 122-286 (287)
34 TIGR00477 tehB tellurite resis 99.4 6.7E-12 1.4E-16 117.3 12.2 122 266-393 32-168 (195)
35 PF02353 CMAS: Mycolic acid cy 99.4 8.4E-12 1.8E-16 123.0 13.3 129 258-394 58-217 (273)
36 PF13847 Methyltransf_31: Meth 99.3 3.4E-12 7.4E-17 113.7 8.9 98 266-369 5-113 (152)
37 TIGR00740 methyltransferase, p 99.3 1.5E-11 3.3E-16 117.6 13.9 99 266-369 55-164 (239)
38 PRK04266 fibrillarin; Provisio 99.3 4.7E-11 1E-15 114.7 16.7 128 258-395 68-211 (226)
39 COG2227 UbiG 2-polyprenyl-3-me 99.3 2.2E-12 4.7E-17 124.1 7.3 97 266-367 61-162 (243)
40 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 2.3E-11 5.1E-16 113.1 13.8 97 266-367 41-144 (223)
41 PRK11088 rrmA 23S rRNA methylt 99.3 1.2E-11 2.6E-16 121.0 10.7 91 265-367 86-182 (272)
42 PLN02336 phosphoethanolamine N 99.3 2.3E-11 4.9E-16 127.6 13.2 125 266-393 39-181 (475)
43 KOG1541 Predicted protein carb 99.3 2.8E-11 6.1E-16 115.0 11.5 135 256-393 42-189 (270)
44 TIGR02081 metW methionine bios 99.3 5.1E-11 1.1E-15 110.7 13.2 120 266-394 15-167 (194)
45 TIGR02716 C20_methyl_CrtF C-20 99.3 4.5E-11 9.9E-16 118.6 13.0 121 265-391 150-303 (306)
46 PRK00107 gidB 16S rRNA methylt 99.3 8.6E-11 1.9E-15 109.8 14.0 112 266-391 47-166 (187)
47 PF08003 Methyltransf_9: Prote 99.2 4.2E-11 9E-16 119.0 11.1 126 266-396 117-269 (315)
48 smart00138 MeTrc Methyltransfe 99.2 3.9E-11 8.5E-16 117.5 10.8 100 265-367 100-243 (264)
49 PRK06202 hypothetical protein; 99.2 8.2E-11 1.8E-15 112.1 12.6 98 265-367 61-167 (232)
50 COG2230 Cfa Cyclopropane fatty 99.2 4.9E-11 1.1E-15 117.8 11.3 136 254-394 64-223 (283)
51 PRK06922 hypothetical protein; 99.2 3.5E-11 7.7E-16 130.0 10.7 100 266-367 420-538 (677)
52 TIGR00537 hemK_rel_arch HemK-r 99.2 2.6E-10 5.6E-15 104.6 14.7 119 266-391 21-162 (179)
53 PRK00517 prmA ribosomal protei 99.2 1.1E-10 2.3E-15 113.2 12.6 126 266-414 121-250 (250)
54 PRK11188 rrmJ 23S rRNA methylt 99.2 1.6E-10 3.5E-15 109.5 13.4 139 260-411 49-206 (209)
55 PRK11705 cyclopropane fatty ac 99.2 6.5E-11 1.4E-15 121.9 11.4 102 258-367 163-268 (383)
56 PRK00121 trmB tRNA (guanine-N( 99.2 4.6E-11 9.9E-16 112.3 9.2 120 265-389 41-176 (202)
57 PF07021 MetW: Methionine bios 99.2 4E-11 8.6E-16 112.2 8.6 130 253-395 6-168 (193)
58 KOG4300 Predicted methyltransf 99.2 3.9E-11 8.4E-16 113.2 8.1 95 267-366 79-182 (252)
59 PLN02232 ubiquinone biosynthes 99.2 7E-11 1.5E-15 107.2 9.5 98 293-393 2-146 (160)
60 COG4976 Predicted methyltransf 99.2 3.4E-11 7.3E-16 115.1 7.4 135 253-392 113-263 (287)
61 PF08242 Methyltransf_12: Meth 99.2 1.3E-11 2.8E-16 101.9 4.0 89 269-362 1-99 (99)
62 PF03848 TehB: Tellurite resis 99.2 1.1E-10 2.3E-15 109.8 10.1 98 266-367 32-134 (192)
63 TIGR00138 gidB 16S rRNA methyl 99.2 2.3E-10 5E-15 106.2 12.2 115 266-391 44-166 (181)
64 TIGR02021 BchM-ChlM magnesium 99.2 3E-10 6.6E-15 107.2 13.2 122 265-392 56-204 (219)
65 PRK08287 cobalt-precorrin-6Y C 99.2 5.3E-10 1.1E-14 103.2 14.4 118 259-391 28-153 (187)
66 PRK14968 putative methyltransf 99.1 2.1E-09 4.5E-14 97.8 16.7 119 266-390 25-169 (188)
67 TIGR03840 TMPT_Se_Te thiopurin 99.1 7.6E-10 1.6E-14 105.4 13.6 99 266-367 36-153 (213)
68 PTZ00146 fibrillarin; Provisio 99.1 1.3E-09 2.8E-14 108.4 15.3 147 259-415 129-290 (293)
69 PRK05134 bifunctional 3-demeth 99.1 9.4E-10 2E-14 104.4 13.6 121 266-391 50-202 (233)
70 TIGR01983 UbiG ubiquinone bios 99.1 6.2E-10 1.3E-14 104.6 12.1 122 265-391 46-200 (224)
71 KOG3010 Methyltransferase [Gen 99.1 2.7E-10 5.8E-15 109.6 8.2 95 259-360 29-130 (261)
72 TIGR03534 RF_mod_PrmC protein- 99.1 1.2E-09 2.7E-14 104.0 12.6 135 250-391 73-238 (251)
73 TIGR02469 CbiT precorrin-6Y C5 99.1 8.3E-10 1.8E-14 93.2 10.0 92 266-365 21-121 (124)
74 PRK09489 rsmC 16S ribosomal RN 99.1 2.4E-09 5.1E-14 108.9 14.9 135 266-416 198-341 (342)
75 TIGR00091 tRNA (guanine-N(7)-) 99.1 5.9E-10 1.3E-14 104.0 9.6 120 266-390 18-154 (194)
76 KOG1270 Methyltransferases [Co 99.1 2.1E-10 4.6E-15 111.6 6.7 94 266-367 91-196 (282)
77 PRK07580 Mg-protoporphyrin IX 99.1 2E-09 4.3E-14 101.4 13.0 123 266-394 65-214 (230)
78 COG2264 PrmA Ribosomal protein 99.0 1.6E-09 3.4E-14 108.0 12.2 119 265-393 163-287 (300)
79 KOG2361 Predicted methyltransf 99.0 1.8E-09 3.8E-14 104.1 12.0 160 253-415 60-264 (264)
80 TIGR00438 rrmJ cell division p 99.0 2.1E-09 4.6E-14 99.4 11.9 99 260-367 30-147 (188)
81 TIGR00406 prmA ribosomal prote 99.0 3.4E-09 7.4E-14 104.9 13.9 114 266-390 161-279 (288)
82 PF05148 Methyltransf_8: Hypot 99.0 2.2E-09 4.8E-14 101.8 11.9 140 250-415 60-199 (219)
83 COG4106 Tam Trans-aconitate me 99.0 1.2E-09 2.6E-14 103.8 9.6 108 260-371 26-134 (257)
84 PRK13255 thiopurine S-methyltr 99.0 1.9E-09 4.2E-14 103.0 10.7 96 266-364 39-153 (218)
85 PRK10901 16S rRNA methyltransf 99.0 9.1E-09 2E-13 107.3 16.7 155 253-413 235-426 (427)
86 PRK00377 cbiT cobalt-precorrin 99.0 1.2E-08 2.5E-13 95.4 15.1 123 259-394 37-172 (198)
87 TIGR01177 conserved hypothetic 99.0 6.1E-09 1.3E-13 104.9 13.6 121 259-390 179-311 (329)
88 PRK13944 protein-L-isoaspartat 99.0 2.8E-09 6E-14 100.4 10.3 97 257-366 67-173 (205)
89 PF06325 PrmA: Ribosomal prote 99.0 5.8E-09 1.2E-13 104.1 13.0 115 266-392 163-281 (295)
90 PLN02585 magnesium protoporphy 98.9 1E-08 2.3E-13 103.2 13.4 120 266-392 146-297 (315)
91 PRK09328 N5-glutamine S-adenos 98.9 2.4E-08 5.3E-13 96.8 14.8 137 249-392 92-260 (275)
92 PRK13942 protein-L-isoaspartat 98.9 6.6E-09 1.4E-13 98.5 10.2 96 257-365 71-175 (212)
93 PRK14901 16S rRNA methyltransf 98.9 2.3E-08 5E-13 104.5 15.2 154 254-414 244-433 (434)
94 TIGR00080 pimt protein-L-isoas 98.9 7.6E-09 1.6E-13 97.8 10.1 98 255-365 70-176 (215)
95 PRK14967 putative methyltransf 98.9 5.4E-08 1.2E-12 92.5 15.6 117 266-388 38-178 (223)
96 PRK15001 SAM-dependent 23S rib 98.9 9.9E-09 2.2E-13 105.7 11.0 112 249-366 216-340 (378)
97 cd02440 AdoMet_MTases S-adenos 98.9 1.2E-08 2.5E-13 80.8 9.0 95 267-365 1-103 (107)
98 TIGR00563 rsmB ribosomal RNA s 98.9 4.8E-08 1E-12 101.8 15.9 156 253-413 229-425 (426)
99 PRK14966 unknown domain/N5-glu 98.9 3.2E-08 6.9E-13 102.9 14.3 155 247-413 235-420 (423)
100 PRK14121 tRNA (guanine-N(7)-)- 98.9 8.9E-09 1.9E-13 106.1 9.9 98 266-366 124-235 (390)
101 TIGR00536 hemK_fam HemK family 98.9 5.9E-08 1.3E-12 95.8 15.1 119 266-391 116-266 (284)
102 PLN03075 nicotianamine synthas 98.8 2.9E-08 6.2E-13 99.1 11.9 100 264-367 123-234 (296)
103 TIGR00446 nop2p NOL1/NOP2/sun 98.8 1.6E-07 3.4E-12 92.0 16.6 126 256-385 65-218 (264)
104 TIGR03533 L3_gln_methyl protei 98.8 4.8E-08 1E-12 96.8 13.1 117 266-390 123-270 (284)
105 PRK14902 16S rRNA methyltransf 98.8 1.3E-07 2.8E-12 99.0 16.9 159 252-414 240-443 (444)
106 PRK14904 16S rRNA methyltransf 98.8 1.5E-07 3.3E-12 98.6 16.8 156 255-415 243-444 (445)
107 KOG1271 Methyltransferases [Ge 98.8 3.3E-08 7.1E-13 92.0 10.3 122 266-391 69-202 (227)
108 TIGR03438 probable methyltrans 98.8 3.4E-08 7.4E-13 98.4 10.8 99 266-367 65-178 (301)
109 PF13659 Methyltransf_26: Meth 98.8 1.8E-08 4E-13 84.9 6.7 98 267-366 3-115 (117)
110 PRK07402 precorrin-6B methylas 98.7 6.2E-08 1.4E-12 90.1 10.8 99 258-367 36-143 (196)
111 KOG3045 Predicted RNA methylas 98.7 9.4E-08 2E-12 93.1 12.1 137 250-415 168-305 (325)
112 PRK00312 pcm protein-L-isoaspa 98.7 8.1E-08 1.8E-12 90.4 11.2 98 257-367 73-176 (212)
113 KOG2940 Predicted methyltransf 98.7 1.8E-08 4E-13 96.6 6.7 137 253-394 62-227 (325)
114 PRK11805 N5-glutamine S-adenos 98.7 1.6E-07 3.5E-12 94.2 13.7 116 266-389 135-281 (307)
115 PF05219 DREV: DREV methyltran 98.7 1.7E-07 3.8E-12 91.5 13.3 146 238-396 66-242 (265)
116 PF05175 MTS: Methyltransferas 98.7 6.1E-08 1.3E-12 88.6 9.6 100 266-367 33-141 (170)
117 PRK01544 bifunctional N5-gluta 98.7 1.8E-07 3.8E-12 99.9 14.2 119 266-391 140-290 (506)
118 PF06080 DUF938: Protein of un 98.7 2.4E-07 5.1E-12 87.9 13.4 121 267-390 28-188 (204)
119 PRK14903 16S rRNA methyltransf 98.7 1.7E-07 3.6E-12 98.2 12.4 134 253-390 228-391 (431)
120 PHA03411 putative methyltransf 98.6 3.1E-07 6.8E-12 90.8 12.2 121 266-389 66-209 (279)
121 PF00891 Methyltransf_2: O-met 98.6 9.9E-08 2.2E-12 91.4 8.1 100 263-369 99-202 (241)
122 PRK00811 spermidine synthase; 98.6 1.8E-07 4E-12 92.6 10.1 100 264-365 76-190 (283)
123 PF05891 Methyltransf_PK: AdoM 98.6 4E-07 8.7E-12 87.0 11.4 129 264-394 55-201 (218)
124 TIGR03704 PrmC_rel_meth putati 98.6 5.6E-07 1.2E-11 87.7 12.6 134 249-389 69-235 (251)
125 COG4123 Predicted O-methyltran 98.6 6.2E-07 1.3E-11 87.4 12.6 138 248-391 25-191 (248)
126 PRK13256 thiopurine S-methyltr 98.6 5.9E-07 1.3E-11 86.6 11.9 99 266-367 45-164 (226)
127 PF03291 Pox_MCEL: mRNA cappin 98.6 1.5E-07 3.3E-12 95.4 7.8 102 265-367 63-187 (331)
128 PRK04457 spermidine synthase; 98.5 1.2E-06 2.5E-11 86.0 13.5 98 265-365 67-176 (262)
129 COG2890 HemK Methylase of poly 98.5 2.1E-06 4.5E-11 85.2 15.2 133 245-387 91-255 (280)
130 PRK13943 protein-L-isoaspartat 98.5 4.2E-07 9.1E-12 91.9 9.9 95 258-365 76-179 (322)
131 smart00650 rADc Ribosomal RNA 98.5 7E-07 1.5E-11 81.3 10.3 96 266-367 15-114 (169)
132 PRK01581 speE spermidine synth 98.5 1.9E-06 4E-11 88.4 13.2 128 264-393 150-296 (374)
133 COG2813 RsmC 16S RNA G1207 met 98.5 4.3E-06 9.4E-11 83.4 15.3 112 249-367 146-267 (300)
134 TIGR00417 speE spermidine synt 98.4 6.1E-06 1.3E-10 81.1 15.2 100 264-365 72-185 (270)
135 PRK03612 spermidine synthase; 98.4 1.9E-06 4.2E-11 92.2 12.6 123 264-387 297-437 (521)
136 COG0500 SmtA SAM-dependent met 98.4 2.7E-06 5.9E-11 68.7 9.5 95 268-368 52-157 (257)
137 PF01135 PCMT: Protein-L-isoas 98.3 1E-06 2.2E-11 84.0 7.3 98 254-365 64-171 (209)
138 PLN02366 spermidine synthase 98.3 7.3E-06 1.6E-10 82.4 13.1 99 265-365 92-205 (308)
139 KOG1975 mRNA cap methyltransfe 98.3 9.1E-07 2E-11 88.7 6.3 103 264-367 117-238 (389)
140 PF05724 TPMT: Thiopurine S-me 98.3 6.1E-06 1.3E-10 79.1 11.1 125 266-394 39-190 (218)
141 COG2521 Predicted archaeal met 98.3 2.4E-06 5.1E-11 82.5 8.1 123 266-391 136-274 (287)
142 PLN02781 Probable caffeoyl-CoA 98.2 5.4E-06 1.2E-10 80.0 10.0 106 254-369 60-181 (234)
143 COG2242 CobL Precorrin-6B meth 98.2 4.2E-05 9.2E-10 71.6 15.0 122 258-394 30-161 (187)
144 PRK13168 rumA 23S rRNA m(5)U19 98.2 2.9E-05 6.4E-10 81.5 15.6 116 266-394 299-424 (443)
145 PRK10611 chemotaxis methyltran 98.2 9.5E-06 2.1E-10 80.9 10.5 97 267-366 118-262 (287)
146 COG2519 GCD14 tRNA(1-methylade 98.2 1.3E-05 2.9E-10 78.2 11.1 130 253-396 85-223 (256)
147 COG2518 Pcm Protein-L-isoaspar 98.2 1E-05 2.3E-10 77.0 10.1 100 253-366 63-169 (209)
148 PRK11783 rlmL 23S rRNA m(2)G24 98.2 4.3E-06 9.3E-11 92.6 8.1 120 266-390 540-676 (702)
149 KOG1269 SAM-dependent methyltr 98.2 3.7E-06 8E-11 86.4 7.0 101 260-367 108-216 (364)
150 PF02390 Methyltransf_4: Putat 98.1 6.5E-06 1.4E-10 77.5 8.0 118 267-390 20-156 (195)
151 KOG2899 Predicted methyltransf 98.1 1.3E-05 2.9E-10 77.8 9.9 100 266-367 60-210 (288)
152 PLN02672 methionine S-methyltr 98.1 1.9E-05 4.1E-10 90.7 11.9 124 266-395 120-305 (1082)
153 PHA03412 putative methyltransf 98.1 1.7E-05 3.6E-10 77.1 9.7 93 266-361 51-158 (241)
154 KOG1331 Predicted methyltransf 98.1 2.3E-06 5E-11 84.5 3.2 99 260-365 43-142 (293)
155 KOG1499 Protein arginine N-met 98.1 6E-06 1.3E-10 83.6 6.1 96 266-362 62-163 (346)
156 PRK03522 rumB 23S rRNA methylu 98.0 9.8E-06 2.1E-10 81.3 7.5 94 266-367 175-275 (315)
157 PF01728 FtsJ: FtsJ-like methy 98.0 1E-05 2.3E-10 74.1 6.8 140 260-410 19-179 (181)
158 PRK15128 23S rRNA m(5)C1962 me 98.0 3.8E-05 8.3E-10 79.8 11.4 120 266-387 222-362 (396)
159 TIGR00478 tly hemolysin TlyA f 98.0 1.5E-05 3.2E-10 77.1 7.3 118 266-396 77-219 (228)
160 PF01739 CheR: CheR methyltran 98.0 3.5E-05 7.6E-10 72.8 9.6 101 264-367 31-176 (196)
161 PRK11933 yebU rRNA (cytosine-C 98.0 0.0002 4.3E-09 76.1 16.2 153 259-415 110-308 (470)
162 PF08704 GCD14: tRNA methyltra 97.9 7.2E-05 1.6E-09 73.1 10.0 124 253-391 31-168 (247)
163 PF07942 N2227: N2227-like pro 97.9 0.00019 4.1E-09 71.1 12.9 141 249-394 36-242 (270)
164 TIGR00479 rumA 23S rRNA (uraci 97.9 0.00016 3.4E-09 75.6 13.0 116 266-393 294-419 (431)
165 PRK04148 hypothetical protein; 97.9 9.5E-05 2.1E-09 66.0 9.6 92 265-367 17-110 (134)
166 PRK00274 ksgA 16S ribosomal RN 97.9 3.2E-05 7E-10 76.1 7.1 72 259-334 39-113 (272)
167 PRK14896 ksgA 16S ribosomal RN 97.8 5.7E-05 1.2E-09 73.7 8.1 74 259-338 26-103 (258)
168 COG1041 Predicted DNA modifica 97.8 0.00019 4.1E-09 73.1 12.0 120 260-391 195-327 (347)
169 PLN02476 O-methyltransferase 97.8 7.3E-05 1.6E-09 74.3 8.8 108 254-371 110-233 (278)
170 PF11968 DUF3321: Putative met 97.8 0.00013 2.7E-09 70.0 9.9 119 266-396 53-183 (219)
171 COG0220 Predicted S-adenosylme 97.8 5.6E-05 1.2E-09 73.0 6.7 99 266-365 50-163 (227)
172 TIGR02085 meth_trns_rumB 23S r 97.7 0.0005 1.1E-08 70.9 13.9 111 266-391 235-353 (374)
173 TIGR00755 ksgA dimethyladenosi 97.7 0.00018 4E-09 69.8 10.1 69 265-337 30-105 (253)
174 PRK10909 rsmD 16S rRNA m(2)G96 97.7 0.00018 4E-09 68.0 9.6 97 266-368 55-161 (199)
175 PF12147 Methyltransf_20: Puta 97.7 0.00044 9.6E-09 69.0 12.1 129 262-391 133-295 (311)
176 KOG2904 Predicted methyltransf 97.7 0.00035 7.5E-09 69.2 11.2 99 267-367 151-286 (328)
177 COG4122 Predicted O-methyltran 97.7 0.00015 3.2E-09 69.7 8.3 108 253-370 50-170 (219)
178 PF05185 PRMT5: PRMT5 arginine 97.7 0.00012 2.6E-09 77.2 8.3 93 266-362 188-293 (448)
179 PF01596 Methyltransf_3: O-met 97.7 0.00014 3.1E-09 69.1 7.9 98 265-370 46-159 (205)
180 PF01269 Fibrillarin: Fibrilla 97.6 0.0009 1.9E-08 64.5 12.5 146 259-413 70-229 (229)
181 PRK01544 bifunctional N5-gluta 97.6 0.00027 5.9E-09 75.7 9.3 100 264-365 347-461 (506)
182 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.6 0.00081 1.8E-08 66.2 11.8 87 325-413 157-256 (256)
183 PF10294 Methyltransf_16: Puta 97.5 0.0003 6.6E-09 64.8 7.3 99 265-369 46-159 (173)
184 KOG3178 Hydroxyindole-O-methyl 97.4 0.00074 1.6E-08 68.7 10.1 94 264-367 177-276 (342)
185 PLN02823 spermine synthase 97.4 0.00057 1.2E-08 69.7 9.2 100 264-365 103-219 (336)
186 PTZ00338 dimethyladenosine tra 97.4 0.00036 7.8E-09 69.9 7.0 68 266-337 38-112 (294)
187 COG1352 CheR Methylase of chem 97.3 0.0016 3.4E-08 64.6 10.4 113 253-367 85-242 (268)
188 KOG3191 Predicted N6-DNA-methy 97.3 0.0077 1.7E-07 56.6 13.7 141 242-389 17-188 (209)
189 COG2263 Predicted RNA methylas 97.2 0.0013 2.7E-08 62.0 8.0 64 266-333 47-115 (198)
190 PLN02589 caffeoyl-CoA O-methyl 97.2 0.0012 2.6E-08 64.6 8.1 98 265-370 80-194 (247)
191 KOG1709 Guanidinoacetate methy 97.2 0.0015 3.2E-08 62.9 8.2 109 242-362 85-202 (271)
192 PRK00536 speE spermidine synth 97.2 0.0049 1.1E-07 60.9 12.2 91 262-365 70-170 (262)
193 COG0293 FtsJ 23S rRNA methylas 97.2 0.008 1.7E-07 57.3 13.1 138 266-414 47-203 (205)
194 PF01170 UPF0020: Putative RNA 97.1 0.00089 1.9E-08 62.1 6.3 121 260-392 26-169 (179)
195 TIGR00095 RNA methyltransferas 97.1 0.002 4.3E-08 60.4 8.5 98 266-368 51-161 (189)
196 PF09243 Rsm22: Mitochondrial 97.0 0.0063 1.4E-07 60.2 11.6 119 264-388 33-162 (274)
197 KOG1661 Protein-L-isoaspartate 97.0 0.0022 4.7E-08 61.4 7.8 93 260-365 80-192 (237)
198 PRK04338 N(2),N(2)-dimethylgua 97.0 0.0017 3.6E-08 67.4 7.1 92 266-366 59-158 (382)
199 PRK11727 23S rRNA mA1618 methy 96.9 0.0032 7E-08 63.9 8.7 86 250-337 94-200 (321)
200 PRK05031 tRNA (uracil-5-)-meth 96.9 0.0034 7.4E-08 64.5 8.5 114 266-395 208-344 (362)
201 PF01564 Spermine_synth: Sperm 96.9 0.016 3.5E-07 56.5 12.5 144 264-414 76-238 (246)
202 KOG1500 Protein arginine N-met 96.9 0.0068 1.5E-07 61.7 9.9 95 265-363 178-279 (517)
203 COG3963 Phospholipid N-methylt 96.8 0.0063 1.4E-07 56.5 8.5 112 253-367 39-157 (194)
204 PF02475 Met_10: Met-10+ like- 96.7 0.0024 5.3E-08 60.6 5.6 91 260-362 99-198 (200)
205 KOG1663 O-methyltransferase [S 96.7 0.0088 1.9E-07 57.9 8.8 108 253-370 64-187 (237)
206 KOG2352 Predicted spermine/spe 96.6 0.008 1.7E-07 63.7 8.7 100 267-367 51-162 (482)
207 PF02527 GidB: rRNA small subu 96.6 0.0076 1.6E-07 56.5 7.8 114 267-391 51-172 (184)
208 COG0144 Sun tRNA and rRNA cyto 96.6 0.12 2.6E-06 53.1 16.9 128 254-385 148-307 (355)
209 KOG0820 Ribosomal RNA adenine 96.5 0.01 2.2E-07 58.9 8.4 75 253-333 46-130 (315)
210 COG0421 SpeE Spermidine syntha 96.5 0.011 2.3E-07 59.1 8.3 103 261-365 73-189 (282)
211 COG4627 Uncharacterized protei 96.5 0.00052 1.1E-08 62.8 -0.9 51 316-367 37-87 (185)
212 PRK11760 putative 23S rRNA C24 96.5 0.0067 1.5E-07 62.1 6.9 84 266-359 213-296 (357)
213 COG1189 Predicted rRNA methyla 96.4 0.035 7.6E-07 54.1 11.4 123 266-396 81-226 (245)
214 KOG3987 Uncharacterized conser 96.4 0.0023 4.9E-08 61.3 2.8 122 265-396 113-262 (288)
215 KOG4589 Cell division protein 96.4 0.045 9.8E-07 51.9 11.1 142 266-417 71-231 (232)
216 COG0030 KsgA Dimethyladenosine 96.3 0.011 2.3E-07 58.4 7.4 68 266-335 32-104 (259)
217 cd00315 Cyt_C5_DNA_methylase C 96.2 0.2 4.3E-06 49.5 15.5 142 267-411 2-163 (275)
218 COG1092 Predicted SAM-dependen 96.1 0.083 1.8E-06 55.2 13.1 121 266-388 219-360 (393)
219 COG2520 Predicted methyltransf 96.1 0.12 2.5E-06 53.1 13.5 126 261-396 187-324 (341)
220 TIGR03439 methyl_EasF probable 96.1 0.064 1.4E-06 54.5 11.5 102 266-370 78-201 (319)
221 PRK13699 putative methylase; P 96.0 0.021 4.6E-07 55.1 7.6 76 312-391 4-93 (227)
222 KOG2798 Putative trehalase [Ca 95.9 0.081 1.8E-06 53.6 11.4 142 248-394 129-337 (369)
223 COG1889 NOP1 Fibrillarin-like 95.8 0.39 8.4E-06 46.2 14.6 166 235-410 46-228 (231)
224 TIGR00308 TRM1 tRNA(guanine-26 95.8 0.014 2.9E-07 60.6 5.3 92 267-366 47-147 (374)
225 PRK00050 16S rRNA m(4)C1402 me 95.7 0.017 3.7E-07 58.1 5.6 77 253-333 7-97 (296)
226 PF05958 tRNA_U5-meth_tr: tRNA 95.6 0.17 3.7E-06 51.8 12.6 129 253-396 185-335 (352)
227 COG0357 GidB Predicted S-adeno 95.5 0.18 3.9E-06 48.6 11.5 114 266-391 69-192 (215)
228 PF02384 N6_Mtase: N-6 DNA Met 95.3 0.08 1.7E-06 52.6 8.9 111 253-367 37-184 (311)
229 TIGR02987 met_A_Alw26 type II 95.3 0.27 5.9E-06 52.8 13.3 42 265-306 32-81 (524)
230 COG4798 Predicted methyltransf 95.2 0.069 1.5E-06 50.9 7.6 129 259-390 45-201 (238)
231 PF10672 Methyltrans_SAM: S-ad 95.1 0.12 2.6E-06 51.9 9.2 123 266-392 125-264 (286)
232 PF13679 Methyltransf_32: Meth 95.0 0.059 1.3E-06 47.7 6.3 53 253-307 12-72 (141)
233 TIGR02143 trmA_only tRNA (urac 95.0 0.037 8E-07 56.8 5.4 109 267-391 200-331 (353)
234 PF03602 Cons_hypoth95: Conser 94.9 0.026 5.7E-07 52.7 3.9 100 266-369 44-156 (183)
235 PF00398 RrnaAD: Ribosomal RNA 94.8 0.082 1.8E-06 51.8 7.0 73 258-334 26-105 (262)
236 PF13578 Methyltransf_24: Meth 94.6 0.0088 1.9E-07 49.8 -0.2 92 269-366 1-105 (106)
237 KOG3201 Uncharacterized conser 94.5 0.024 5.2E-07 52.5 2.3 116 266-390 31-162 (201)
238 PRK11783 rlmL 23S rRNA m(2)G24 94.4 0.21 4.7E-06 55.8 10.0 75 292-366 260-347 (702)
239 KOG2915 tRNA(1-methyladenosine 94.3 0.5 1.1E-05 47.3 11.2 127 253-391 96-232 (314)
240 TIGR01444 fkbM_fam methyltrans 94.3 0.052 1.1E-06 47.2 4.0 38 267-306 1-40 (143)
241 PF04816 DUF633: Family of unk 94.2 1.4 3.1E-05 42.0 13.7 117 268-396 1-126 (205)
242 KOG3420 Predicted RNA methylas 94.0 0.098 2.1E-06 47.8 5.2 71 266-337 50-125 (185)
243 COG5459 Predicted rRNA methyla 93.8 0.087 1.9E-06 54.2 4.9 104 265-368 114-227 (484)
244 PF09445 Methyltransf_15: RNA 93.7 0.11 2.4E-06 47.9 5.1 66 266-333 1-76 (163)
245 PF08123 DOT1: Histone methyla 93.6 0.15 3.3E-06 48.5 6.1 104 258-370 38-162 (205)
246 PLN02668 indole-3-acetate carb 93.5 0.29 6.2E-06 51.1 8.4 19 322-340 158-176 (386)
247 COG2265 TrmA SAM-dependent met 93.5 0.3 6.4E-06 51.7 8.5 110 266-388 295-414 (432)
248 COG0742 N6-adenine-specific me 93.4 0.46 1E-05 44.8 8.8 101 266-367 45-155 (187)
249 cd08283 FDH_like_1 Glutathione 93.3 0.44 9.6E-06 48.7 9.3 102 259-366 181-306 (386)
250 PF04672 Methyltransf_19: S-ad 92.9 0.35 7.6E-06 48.1 7.5 105 264-370 68-194 (267)
251 PF03269 DUF268: Caenorhabditi 92.9 0.068 1.5E-06 49.4 2.4 48 323-370 60-115 (177)
252 cd08254 hydroxyacyl_CoA_DH 6-h 92.9 0.6 1.3E-05 45.7 9.3 93 260-366 163-263 (338)
253 PRK11524 putative methyltransf 92.8 0.33 7.2E-06 48.1 7.3 54 312-365 11-79 (284)
254 PF00145 DNA_methylase: C-5 cy 92.8 1.1 2.4E-05 43.9 10.9 141 267-412 2-163 (335)
255 KOG3115 Methyltransferase-like 92.6 0.34 7.3E-06 46.6 6.6 30 267-296 63-92 (249)
256 PF10354 DUF2431: Domain of un 92.4 1.9 4.2E-05 39.7 11.2 119 271-391 3-149 (166)
257 COG3897 Predicted methyltransf 92.1 0.35 7.6E-06 46.2 6.0 96 266-368 81-181 (218)
258 PF01189 Nol1_Nop2_Fmu: NOL1/N 91.8 0.59 1.3E-05 46.6 7.7 125 257-385 80-238 (283)
259 KOG1122 tRNA and rRNA cytosine 91.8 1.1 2.4E-05 47.2 9.7 122 260-385 237-390 (460)
260 PF06859 Bin3: Bicoid-interact 91.7 0.058 1.3E-06 46.7 0.3 41 326-367 1-45 (110)
261 KOG1596 Fibrillarin and relate 90.5 1.5 3.2E-05 43.4 8.7 101 260-367 154-262 (317)
262 PF03059 NAS: Nicotianamine sy 90.5 1.5 3.2E-05 43.9 9.0 101 265-367 121-231 (276)
263 TIGR00675 dcm DNA-methyltransf 90.4 6.1 0.00013 39.9 13.6 139 268-411 1-160 (315)
264 COG1064 AdhP Zn-dependent alco 89.7 0.85 1.9E-05 46.8 6.7 95 260-368 164-261 (339)
265 PF03492 Methyltransf_7: SAM d 89.6 2.3 4.9E-05 43.5 9.7 85 254-340 5-121 (334)
266 COG4262 Predicted spermidine s 89.1 2.3 4.9E-05 44.4 9.1 126 265-393 290-435 (508)
267 COG0270 Dcm Site-specific DNA 88.4 3.5 7.7E-05 41.8 10.1 143 266-411 4-167 (328)
268 KOG2793 Putative N2,N2-dimethy 87.9 5.7 0.00012 39.2 10.9 99 265-368 87-201 (248)
269 COG1063 Tdh Threonine dehydrog 87.4 3.2 6.8E-05 42.4 9.1 93 267-369 171-272 (350)
270 PRK09424 pntA NAD(P) transhydr 87.2 3.5 7.5E-05 44.7 9.7 95 266-365 166-284 (509)
271 KOG2198 tRNA cytosine-5-methyl 86.8 6.9 0.00015 40.7 11.0 126 259-386 152-316 (375)
272 PRK09880 L-idonate 5-dehydroge 86.5 3 6.5E-05 41.7 8.3 92 266-367 171-267 (343)
273 PRK10742 putative methyltransf 84.8 4.1 9E-05 40.2 8.1 85 253-339 77-177 (250)
274 PF01555 N6_N4_Mtase: DNA meth 84.0 2 4.4E-05 39.5 5.3 48 344-393 34-82 (231)
275 cd08234 threonine_DH_like L-th 83.8 5.9 0.00013 38.8 8.9 95 259-366 156-257 (334)
276 PF06962 rRNA_methylase: Putat 83.6 7.2 0.00016 35.2 8.4 118 292-413 3-140 (140)
277 TIGR03451 mycoS_dep_FDH mycoth 81.7 8.5 0.00018 38.7 9.3 95 260-367 174-277 (358)
278 COG0116 Predicted N6-adenine-s 81.5 9.6 0.00021 39.9 9.6 100 266-367 193-345 (381)
279 PF00107 ADH_zinc_N: Zinc-bind 81.4 3.3 7.1E-05 35.0 5.3 85 274-369 1-92 (130)
280 TIGR01202 bchC 2-desacetyl-2-h 80.9 6.3 0.00014 39.0 7.8 85 266-367 146-232 (308)
281 KOG2539 Mitochondrial/chloropl 80.5 4.8 0.0001 43.1 7.0 102 265-367 201-316 (491)
282 PF05971 Methyltransf_10: Prot 80.3 8.1 0.00017 39.2 8.4 86 250-337 85-188 (299)
283 TIGR02822 adh_fam_2 zinc-bindi 80.1 11 0.00025 37.5 9.4 92 259-367 162-255 (329)
284 KOG2730 Methylase [General fun 79.9 2 4.3E-05 41.9 3.7 120 235-361 67-197 (263)
285 PF04989 CmcI: Cephalosporin h 79.8 2 4.3E-05 41.2 3.7 97 266-367 34-148 (206)
286 cd08230 glucose_DH Glucose deh 79.3 13 0.00029 37.2 9.7 92 266-367 174-270 (355)
287 PHA01634 hypothetical protein 79.3 3.5 7.6E-05 37.1 4.7 40 266-306 30-69 (156)
288 PF01861 DUF43: Protein of unk 78.8 40 0.00086 33.3 12.3 118 266-389 46-173 (243)
289 cd08232 idonate-5-DH L-idonate 78.5 10 0.00023 37.3 8.5 90 266-366 167-262 (339)
290 PF11899 DUF3419: Protein of u 77.1 2.8 6E-05 43.8 4.1 47 322-369 291-337 (380)
291 cd05188 MDR Medium chain reduc 75.7 23 0.00049 32.9 9.6 91 266-367 136-233 (271)
292 PRK10458 DNA cytosine methylas 75.4 97 0.0021 33.4 15.2 37 266-303 89-125 (467)
293 cd08281 liver_ADH_like1 Zinc-d 75.1 15 0.00032 37.2 8.7 95 260-367 189-291 (371)
294 PLN02827 Alcohol dehydrogenase 74.7 17 0.00037 37.1 9.2 95 259-366 190-295 (378)
295 KOG2187 tRNA uracil-5-methyltr 74.4 3 6.5E-05 45.0 3.5 49 254-306 375-423 (534)
296 COG4076 Predicted RNA methylas 74.4 4 8.8E-05 39.1 4.0 89 267-363 35-132 (252)
297 PF07757 AdoMet_MTase: Predict 74.3 2.2 4.7E-05 37.1 2.0 30 265-296 59-88 (112)
298 PRK15001 SAM-dependent 23S rib 73.3 21 0.00046 37.2 9.4 94 267-367 47-143 (378)
299 TIGR03366 HpnZ_proposed putati 73.0 15 0.00032 35.6 7.9 89 266-367 122-219 (280)
300 COG0287 TyrA Prephenate dehydr 72.6 39 0.00084 33.8 10.8 96 266-371 4-101 (279)
301 cd08245 CAD Cinnamyl alcohol d 72.4 23 0.00051 34.6 9.2 95 259-366 159-256 (330)
302 cd08237 ribitol-5-phosphate_DH 72.1 17 0.00038 36.4 8.3 88 266-366 165-256 (341)
303 cd08261 Zn_ADH7 Alcohol dehydr 71.9 24 0.00053 34.7 9.2 94 259-365 156-257 (337)
304 PF07091 FmrO: Ribosomal RNA m 71.9 4.5 9.7E-05 40.0 3.8 85 250-338 92-183 (251)
305 cd05285 sorbitol_DH Sorbitol d 71.1 30 0.00066 34.3 9.7 95 259-365 159-264 (343)
306 cd08239 THR_DH_like L-threonin 70.3 27 0.00058 34.5 9.1 96 259-367 160-263 (339)
307 cd08294 leukotriene_B4_DH_like 70.1 27 0.00059 34.0 9.0 94 259-366 140-241 (329)
308 cd05278 FDH_like Formaldehyde 69.5 25 0.00055 34.5 8.7 92 260-365 165-266 (347)
309 cd08255 2-desacetyl-2-hydroxye 68.2 35 0.00075 32.5 9.1 94 259-366 94-190 (277)
310 PRK01747 mnmC bifunctional tRN 68.0 25 0.00055 38.9 9.2 58 325-390 165-223 (662)
311 cd08293 PTGR2 Prostaglandin re 67.0 42 0.00091 33.1 9.7 95 260-366 150-254 (345)
312 cd08285 NADP_ADH NADP(H)-depen 66.9 36 0.00078 33.8 9.3 96 260-367 164-267 (351)
313 PRK10309 galactitol-1-phosphat 66.6 26 0.00057 34.8 8.2 96 260-367 158-261 (347)
314 TIGR00561 pntA NAD(P) transhyd 65.4 17 0.00038 39.4 7.0 93 266-363 165-281 (511)
315 KOG1099 SAM-dependent methyltr 65.2 8.7 0.00019 37.9 4.2 106 254-367 32-164 (294)
316 TIGR02825 B4_12hDH leukotriene 64.9 44 0.00096 32.8 9.4 94 259-366 135-237 (325)
317 TIGR02819 fdhA_non_GSH formald 64.2 46 0.00099 34.4 9.7 105 260-368 183-301 (393)
318 PF04445 SAM_MT: Putative SAM- 63.9 11 0.00024 36.8 4.8 85 252-338 63-163 (234)
319 PLN03154 putative allyl alcoho 63.0 52 0.0011 33.1 9.7 94 259-366 155-258 (348)
320 PF05430 Methyltransf_30: S-ad 62.3 28 0.0006 30.6 6.6 58 325-390 49-107 (124)
321 PF02153 PDH: Prephenate dehyd 60.2 69 0.0015 31.2 9.6 92 278-383 1-94 (258)
322 PLN02740 Alcohol dehydrogenase 59.9 43 0.00094 34.1 8.5 96 259-367 195-301 (381)
323 PRK07417 arogenate dehydrogena 59.6 50 0.0011 32.4 8.6 82 267-360 2-85 (279)
324 PRK00050 16S rRNA m(4)C1402 me 59.5 16 0.00034 36.9 5.1 34 341-374 211-244 (296)
325 KOG2920 Predicted methyltransf 59.2 7.5 0.00016 39.0 2.7 97 266-366 118-234 (282)
326 TIGR00692 tdh L-threonine 3-de 57.5 62 0.0013 32.0 9.0 90 267-367 164-262 (340)
327 cd08278 benzyl_alcohol_DH Benz 57.4 66 0.0014 32.4 9.3 95 260-366 184-285 (365)
328 cd08279 Zn_ADH_class_III Class 56.7 64 0.0014 32.4 9.1 94 260-366 180-282 (363)
329 PF14740 DUF4471: Domain of un 56.3 13 0.00028 37.6 3.8 59 323-390 219-285 (289)
330 KOG1501 Arginine N-methyltrans 56.1 12 0.00026 40.1 3.6 40 266-306 68-107 (636)
331 cd08242 MDR_like Medium chain 55.5 99 0.0021 30.0 9.9 91 259-365 152-244 (319)
332 cd08295 double_bond_reductase_ 55.2 60 0.0013 32.1 8.4 94 259-366 148-251 (338)
333 cd08277 liver_alcohol_DH_like 54.9 84 0.0018 31.6 9.6 96 259-367 181-287 (365)
334 cd08231 MDR_TM0436_like Hypoth 54.9 83 0.0018 31.4 9.5 90 266-366 179-280 (361)
335 PRK02261 methylaspartate mutas 54.2 1.6E+02 0.0034 26.2 11.1 93 278-390 23-116 (137)
336 PF01555 N6_N4_Mtase: DNA meth 53.5 24 0.00052 32.3 4.9 51 252-306 179-231 (231)
337 KOG1562 Spermidine synthase [A 53.2 13 0.00029 37.8 3.3 101 264-366 121-236 (337)
338 TIGR03201 dearomat_had 6-hydro 53.0 87 0.0019 31.3 9.3 94 260-367 164-273 (349)
339 cd05281 TDH Threonine dehydrog 52.8 72 0.0016 31.5 8.6 90 266-366 165-262 (341)
340 cd08263 Zn_ADH10 Alcohol dehyd 52.8 74 0.0016 31.9 8.8 90 266-366 189-287 (367)
341 TIGR02818 adh_III_F_hyde S-(hy 51.9 1E+02 0.0022 31.2 9.6 96 259-367 182-288 (368)
342 PF01795 Methyltransf_5: MraW 51.2 42 0.0009 34.3 6.6 88 253-362 8-98 (310)
343 PRK10083 putative oxidoreducta 50.7 69 0.0015 31.4 8.0 95 260-366 158-259 (339)
344 cd08298 CAD2 Cinnamyl alcohol 50.7 1.3E+02 0.0029 29.2 10.0 91 259-366 164-256 (329)
345 COG3414 SgaB Phosphotransferas 50.4 28 0.0006 29.3 4.3 66 303-383 25-92 (93)
346 cd08233 butanediol_DH_like (2R 49.9 1.1E+02 0.0024 30.3 9.5 96 259-367 169-273 (351)
347 cd08236 sugar_DH NAD(P)-depend 49.5 1E+02 0.0022 30.3 9.0 95 259-366 156-258 (343)
348 PLN02586 probable cinnamyl alc 49.1 55 0.0012 33.1 7.2 90 266-366 185-278 (360)
349 cd00401 AdoHcyase S-adenosyl-L 49.1 63 0.0014 34.2 7.8 86 266-368 203-291 (413)
350 PF03446 NAD_binding_2: NAD bi 48.8 77 0.0017 28.4 7.4 113 267-393 3-119 (163)
351 PF14314 Methyltrans_Mon: Viru 48.6 2.6E+02 0.0057 31.6 12.7 90 324-416 413-503 (675)
352 cd08258 Zn_ADH4 Alcohol dehydr 48.6 1.7E+02 0.0037 28.6 10.4 97 260-368 162-266 (306)
353 COG0604 Qor NADPH:quinone redu 48.1 1.2E+02 0.0026 30.8 9.4 95 259-367 139-242 (326)
354 TIGR00006 S-adenosyl-methyltra 47.8 42 0.00091 34.1 6.0 50 253-306 8-62 (305)
355 cd02072 Glm_B12_BD B12 binding 47.1 1.7E+02 0.0038 25.9 9.1 89 278-390 19-112 (128)
356 PRK09489 rsmC 16S ribosomal RN 46.4 2.2E+02 0.0047 29.2 11.0 96 266-371 21-117 (342)
357 cd08300 alcohol_DH_class_III c 45.7 1.3E+02 0.0027 30.4 9.2 96 259-367 183-289 (368)
358 COG0286 HsdM Type I restrictio 45.7 1.7E+02 0.0036 31.6 10.5 112 253-366 177-326 (489)
359 COG0863 DNA modification methy 45.7 57 0.0012 31.6 6.5 46 345-394 78-123 (302)
360 KOG2651 rRNA adenine N-6-methy 45.5 33 0.00071 36.3 4.8 35 265-301 154-189 (476)
361 PRK07502 cyclohexadienyl dehyd 45.4 95 0.0021 30.8 8.1 86 266-362 7-96 (307)
362 cd08267 MDR1 Medium chain dehy 45.4 2E+02 0.0043 27.4 10.2 94 260-366 141-240 (319)
363 cd08241 QOR1 Quinone oxidoredu 45.4 1.5E+02 0.0033 28.0 9.3 89 266-366 141-238 (323)
364 PRK13699 putative methylase; P 45.1 65 0.0014 31.0 6.6 52 252-307 151-204 (227)
365 KOG0822 Protein kinase inhibit 44.3 31 0.00066 37.9 4.5 98 265-365 368-477 (649)
366 cd08301 alcohol_DH_plants Plan 43.8 1.3E+02 0.0029 30.2 9.0 96 259-367 184-290 (369)
367 cd05279 Zn_ADH1 Liver alcohol 43.7 1.2E+02 0.0026 30.5 8.7 95 260-366 181-285 (365)
368 KOG1253 tRNA methyltransferase 41.7 20 0.00043 38.8 2.7 93 267-367 112-217 (525)
369 PRK11524 putative methyltransf 41.5 59 0.0013 32.2 5.9 55 251-307 195-249 (284)
370 PLN02702 L-idonate 5-dehydroge 41.3 2.2E+02 0.0047 28.5 10.1 95 259-366 178-285 (364)
371 COG0541 Ffh Signal recognition 40.5 2E+02 0.0043 31.0 9.7 112 276-390 118-244 (451)
372 cd08240 6_hydroxyhexanoate_dh_ 39.6 1.3E+02 0.0029 29.6 8.2 90 266-366 177-274 (350)
373 KOG1298 Squalene monooxygenase 39.3 66 0.0014 34.3 5.9 73 267-339 47-147 (509)
374 PF02005 TRM: N2,N2-dimethylgu 39.0 36 0.00077 35.6 4.0 93 267-367 52-155 (377)
375 PRK05396 tdh L-threonine 3-deh 38.8 1.6E+02 0.0035 28.9 8.6 90 266-367 165-264 (341)
376 PF11253 DUF3052: Protein of u 38.3 87 0.0019 28.0 5.7 65 323-391 42-108 (127)
377 cd08243 quinone_oxidoreductase 37.4 2.3E+02 0.0051 26.9 9.3 91 260-366 140-238 (320)
378 PRK03659 glutathione-regulated 36.3 1.1E+02 0.0023 33.9 7.4 89 267-366 402-498 (601)
379 COG0373 HemA Glutamyl-tRNA red 35.8 1.1E+02 0.0025 32.4 7.1 86 265-354 178-267 (414)
380 TIGR00006 S-adenosyl-methyltra 35.5 40 0.00088 34.2 3.7 34 341-374 215-248 (305)
381 TIGR01501 MthylAspMutase methy 34.6 2.7E+02 0.0058 24.9 8.4 90 277-390 20-114 (134)
382 cd08287 FDH_like_ADH3 formalde 34.3 2.7E+02 0.0059 27.3 9.3 94 260-366 166-268 (345)
383 PRK11064 wecC UDP-N-acetyl-D-m 34.0 1E+02 0.0022 32.3 6.6 101 266-369 4-122 (415)
384 COG0275 Predicted S-adenosylme 33.9 51 0.0011 33.7 4.0 34 341-374 219-252 (314)
385 PRK06545 prephenate dehydrogen 33.5 2.8E+02 0.006 28.4 9.5 92 267-369 2-96 (359)
386 KOG1158 NADP/FAD dependent oxi 33.3 4.3E+02 0.0093 29.8 11.4 44 343-386 575-620 (645)
387 PF02558 ApbA: Ketopantoate re 32.4 1.1E+02 0.0024 26.5 5.6 88 269-366 2-101 (151)
388 cd08235 iditol_2_DH_like L-idi 32.2 3E+02 0.0064 26.9 9.2 94 259-366 162-265 (343)
389 cd08292 ETR_like_2 2-enoyl thi 32.2 2.2E+02 0.0048 27.4 8.2 93 259-365 136-237 (324)
390 PRK08507 prephenate dehydrogen 32.0 2E+02 0.0044 27.9 7.9 82 267-362 2-87 (275)
391 COG2933 Predicted SAM-dependen 31.8 1.1E+02 0.0023 31.2 5.7 73 260-337 209-281 (358)
392 cd08296 CAD_like Cinnamyl alco 31.0 2.6E+02 0.0057 27.4 8.7 95 259-366 160-259 (333)
393 cd08260 Zn_ADH6 Alcohol dehydr 30.9 2.4E+02 0.0053 27.7 8.4 90 266-366 167-264 (345)
394 COG2384 Predicted SAM-dependen 30.8 5.2E+02 0.011 25.3 12.5 114 267-391 19-140 (226)
395 KOG0024 Sorbitol dehydrogenase 30.7 2.9E+02 0.0062 28.8 8.7 95 260-367 167-274 (354)
396 PRK07530 3-hydroxybutyryl-CoA 30.7 3.5E+02 0.0076 26.5 9.4 89 265-363 4-116 (292)
397 PLN02256 arogenate dehydrogena 30.1 2.8E+02 0.0062 27.9 8.7 89 260-361 31-122 (304)
398 cd08274 MDR9 Medium chain dehy 29.7 3.3E+02 0.0072 26.6 9.1 90 260-365 175-272 (350)
399 PF01795 Methyltransf_5: MraW 29.6 39 0.00084 34.5 2.4 40 342-384 217-256 (310)
400 cd08286 FDH_like_ADH2 formalde 28.5 4.1E+02 0.0088 26.1 9.5 92 260-365 164-265 (345)
401 PLN02178 cinnamyl-alcohol dehy 28.3 1.5E+02 0.0033 30.3 6.5 90 266-366 180-273 (375)
402 cd05286 QOR2 Quinone oxidoredu 28.2 4.3E+02 0.0094 24.7 9.3 92 260-365 134-234 (320)
403 TIGR00872 gnd_rel 6-phosphoglu 28.1 3.3E+02 0.0072 26.9 8.8 90 267-367 2-93 (298)
404 PRK05808 3-hydroxybutyryl-CoA 27.5 1.5E+02 0.0032 29.0 6.1 90 266-362 4-114 (282)
405 TIGR00518 alaDH alanine dehydr 27.4 1.1E+02 0.0024 31.6 5.4 93 266-363 168-264 (370)
406 KOG4058 Uncharacterized conser 27.3 90 0.002 29.0 4.1 54 249-304 56-111 (199)
407 PRK09260 3-hydroxybutyryl-CoA 27.2 3.2E+02 0.0069 26.8 8.4 94 266-365 2-116 (288)
408 TIGR00027 mthyl_TIGR00027 meth 27.2 1.6E+02 0.0036 28.8 6.3 103 260-367 78-198 (260)
409 PF02254 TrkA_N: TrkA-N domain 27.2 1.1E+02 0.0023 25.2 4.4 101 273-389 4-112 (116)
410 cd08256 Zn_ADH2 Alcohol dehydr 26.7 3.5E+02 0.0076 26.7 8.7 95 259-366 171-274 (350)
411 COG0773 MurC UDP-N-acetylmuram 26.7 1.3E+02 0.0027 32.5 5.7 59 272-337 17-77 (459)
412 PF02636 Methyltransf_28: Puta 26.4 54 0.0012 31.7 2.7 39 266-306 20-68 (252)
413 cd08262 Zn_ADH8 Alcohol dehydr 26.1 4.6E+02 0.01 25.6 9.4 95 260-367 159-265 (341)
414 cd08289 MDR_yhfp_like Yhfp put 25.5 3.3E+02 0.0072 26.2 8.2 88 266-366 148-243 (326)
415 COG0369 CysJ Sulfite reductase 25.4 7.1E+02 0.015 27.8 11.3 104 266-384 441-560 (587)
416 cd08265 Zn_ADH3 Alcohol dehydr 25.3 3.6E+02 0.0079 27.3 8.7 93 260-366 201-307 (384)
417 cd08270 MDR4 Medium chain dehy 25.0 5.2E+02 0.011 24.5 9.3 86 266-366 134-222 (305)
418 cd08291 ETR_like_1 2-enoyl thi 24.8 2.6E+02 0.0057 27.2 7.4 80 275-366 156-242 (324)
419 PRK07066 3-hydroxybutyryl-CoA 24.6 1.7E+02 0.0036 29.9 6.0 91 264-362 6-115 (321)
420 KOG3674 FtsJ-like RNA methyltr 24.4 64 0.0014 35.1 3.0 44 324-367 224-275 (696)
421 PF08468 MTS_N: Methyltransfer 24.1 2.4E+02 0.0051 25.7 6.3 97 266-371 14-110 (155)
422 TIGR02817 adh_fam_1 zinc-bindi 24.0 4.3E+02 0.0093 25.6 8.7 87 266-364 150-245 (336)
423 PRK06522 2-dehydropantoate 2-r 23.9 5.7E+02 0.012 24.6 9.5 88 267-364 2-98 (304)
424 cd08297 CAD3 Cinnamyl alcohol 23.8 5E+02 0.011 25.4 9.1 94 259-366 162-265 (341)
425 cd08238 sorbose_phosphate_red 23.7 4.7E+02 0.01 26.9 9.3 88 266-364 177-286 (410)
426 COG4301 Uncharacterized conser 23.4 5.2E+02 0.011 26.2 8.8 102 266-369 80-196 (321)
427 COG1867 TRM1 N2,N2-dimethylgua 23.3 1.9E+02 0.0041 30.4 6.1 94 265-367 53-155 (380)
428 cd08266 Zn_ADH_like1 Alcohol d 23.1 4E+02 0.0087 25.4 8.2 93 260-366 164-265 (342)
429 PRK10669 putative cation:proto 22.7 1E+02 0.0022 33.5 4.3 91 267-366 419-515 (558)
430 cd01842 SGNH_hydrolase_like_5 22.5 1.5E+02 0.0032 28.2 4.7 45 322-366 46-99 (183)
431 PTZ00357 methyltransferase; Pr 22.5 1.9E+02 0.0042 33.1 6.2 94 267-361 703-830 (1072)
432 PRK12490 6-phosphogluconate de 22.3 6.1E+02 0.013 25.0 9.4 112 268-390 3-116 (299)
433 PF06557 DUF1122: Protein of u 22.3 2.8E+02 0.006 26.0 6.3 66 347-416 67-142 (170)
434 cd08282 PFDH_like Pseudomonas 22.2 5.6E+02 0.012 25.8 9.3 101 260-366 174-285 (375)
435 cd08246 crotonyl_coA_red croto 22.2 5.7E+02 0.012 25.8 9.4 89 266-366 195-315 (393)
436 PF05206 TRM13: Methyltransfer 22.1 81 0.0018 31.3 3.1 20 266-285 20-39 (259)
437 PRK05476 S-adenosyl-L-homocyst 22.0 2.8E+02 0.0061 29.6 7.2 87 266-369 213-302 (425)
438 PLN02353 probable UDP-glucose 22.0 4.9E+02 0.011 28.1 9.1 102 267-371 3-132 (473)
439 PRK07819 3-hydroxybutyryl-CoA 22.0 2.9E+02 0.0062 27.4 7.0 93 265-363 5-118 (286)
440 PLN02514 cinnamyl-alcohol dehy 21.6 3.1E+02 0.0066 27.6 7.2 89 266-366 182-275 (357)
441 TIGR00936 ahcY adenosylhomocys 21.5 2.9E+02 0.0064 29.2 7.2 87 266-369 196-285 (406)
442 TIGR01081 mpl UDP-N-acetylmura 21.5 4.4E+02 0.0096 27.6 8.6 111 272-389 9-131 (448)
443 PLN02545 3-hydroxybutyryl-CoA 21.3 5.3E+02 0.011 25.3 8.7 89 265-363 4-116 (295)
444 PRK00888 ftsB cell division pr 21.1 3.5E+02 0.0076 23.0 6.4 34 62-95 28-61 (105)
445 cd05289 MDR_like_2 alcohol deh 20.8 6.9E+02 0.015 23.3 9.8 87 266-365 146-237 (309)
446 cd08269 Zn_ADH9 Alcohol dehydr 20.7 7.3E+02 0.016 23.5 9.6 94 260-366 127-229 (312)
447 PF07101 DUF1363: Protein of u 20.6 37 0.00081 29.0 0.3 16 268-283 6-22 (124)
448 COG1255 Uncharacterized protei 20.3 3E+02 0.0066 24.5 5.8 81 267-361 16-99 (129)
449 PRK12921 2-dehydropantoate 2-r 20.1 4.8E+02 0.01 25.3 8.1 88 267-364 2-100 (305)
450 COG0275 Predicted S-adenosylme 20.0 1.9E+02 0.0042 29.6 5.2 40 266-307 25-67 (314)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=6.8e-51 Score=419.64 Aligned_cols=235 Identities=29% Similarity=0.473 Sum_probs=200.0
Q ss_pred CCCCCCCcHHHHH--------HhhhcCCCCC-CCCCcccCCCCCCC-CCCCCCCCCCCCCCCeeeeCCCcccCchhhhhc
Q 037675 153 LSGPCPDDWSLAQ--------KLILRGCEPL-PRRRCFAKSVPKVG-LQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISK 222 (418)
Q Consensus 153 ~~~~C~d~~~~~~--------~l~~r~C~p~-p~~~C~~~~p~~~~-~~p~P~~l~~~~~~~~v~~~~~~~~~~~cl~~~ 222 (418)
+|+||.|.....+ ...+|||||. ++.+||+|+|++|+ |.|||+ ||+.||++|++|+. |+++
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~------SRd~iW~~Nvph~~---L~~~ 71 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPK------SRDYIWYANVPHTK---LAEE 71 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCc------ccceeeecccCchH---Hhhh
Confidence 6899999974221 1246999884 47799999999999 777877 79999999999998 9999
Q ss_pred cccccccccCcccCcccccccccccCCcHH---------HHHHHHcc--CCCCCCeEEEECCccChHHHHHhhcCcEEEE
Q 037675 223 KLSRECVGCFDLDNPNENQRYIKARGKNDF---------LIDDVLAL--GSGGIRIGFDIGGGSGTFAARMAERNVTVIT 291 (418)
Q Consensus 223 ~~~~~~~~~Fdlw~~~e~~~W~~~~~~y~~---------~I~~lL~l--~~g~~r~VLDvGCGtG~faa~La~~gV~vv~ 291 (418)
|+.|| |+..++++|.||+|+++| .|++++++ ..|.+|++||||||+|+||++|.++||++|+
T Consensus 72 K~~qn-------Wv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s 144 (506)
T PF03141_consen 72 KADQN-------WVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMS 144 (506)
T ss_pred ccccc-------ceeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEE
Confidence 99999 999999999999998776 46777777 7789999999999999999999999999999
Q ss_pred ec-cCCCHHhHHHHHHcCCCceeec--ccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675 292 NT-LNVDAPYSEFIAARGLFPLYLS--LDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY 368 (418)
Q Consensus 292 ~a-lD~s~~~l~~a~eRGli~~~~~--~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~ 368 (418)
++ .|.+++|+|+|.|||+ |.+++ ..++||||+++||+|||++|+..|...++ .+|.|++||||||||||++.+-
T Consensus 145 ~a~~d~~~~qvqfaleRGv-pa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g--~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 145 FAPNDEHEAQVQFALERGV-PAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDG--FLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cccccCCchhhhhhhhcCc-chhhhhhccccccCCccchhhhhcccccccchhccc--ceeehhhhhhccCceEEecCCc
Confidence 98 6789999999999998 77765 47999999999999999999999998876 7999999999999999999984
Q ss_pred cC---chh---HHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEEEcCCCCC
Q 037675 369 CA---NDE---KKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPVRVS 418 (418)
Q Consensus 369 ~~---~ee---~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qKP~~~s 418 (418)
.. .++ .++.++.+++.+||+.+ .++.+ +||||||.++|
T Consensus 222 v~~r~~~~~~~~~~~~~~l~~~lCW~~v----a~~~~--------~aIwqKp~~~~ 265 (506)
T PF03141_consen 222 VYQRTDEDLEEEWNAMEDLAKSLCWKKV----AEKGD--------TAIWQKPTNNS 265 (506)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHh----eeeCC--------EEEEeccCCch
Confidence 33 223 33456677777777666 44443 99999999764
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.97 E-value=4.1e-31 Score=273.31 Aligned_cols=240 Identities=23% Similarity=0.304 Sum_probs=183.1
Q ss_pred cccccccccHHHHHhhhcCCCCCCCC--CcHHHHHHhhhcCC-CCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCeeeeC
Q 037675 133 SVGHSCEKSADLLTQYMTYKLSGPCP--DDWSLAQKLILRGC-EPLPRRRCFAKSVPKVGLQSFPVSLWKPVSDKIVTWS 209 (418)
Q Consensus 133 ~~~~~C~~~~~~l~~~~~y~~~~~C~--d~~~~~~~l~~r~C-~p~p~~~C~~~~p~~~~~~p~P~~l~~~~~~~~v~~~ 209 (418)
|..++|... + -..+....|. ||.+.+|+..++.| +|+|....- -.+..+.+||+||.++|+|..-.
T Consensus 261 p~~~~Cy~~-----r-~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~---~~~~~~~~WP~RL~~~P~rl~~~-- 329 (506)
T PF03141_consen 261 PTNNSCYQK-----R-KPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSE---IAGGWLPKWPERLNAVPPRLSSG-- 329 (506)
T ss_pred cCCchhhhh-----c-cCCCCCCCCCCCCCCcchhhcchhhhcCcCCccccc---ccccCCCCChhhhccCchhhhcC--
Confidence 456789832 1 0134567898 34468899999999 887754220 11223789999999999986421
Q ss_pred CCcccCchhhhhccccccccccCcccCcccccccccccCCcHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEE
Q 037675 210 GLGCKNLSCLISKKLSRECVGCFDLDNPNENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTV 289 (418)
Q Consensus 210 ~~~~~~~~cl~~~~~~~~~~~~Fdlw~~~e~~~W~~~~~~y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~v 289 (418)
.. .+...+ -+..|.++|......|..++. +.+..+++|+||||++|+|+|||+|.+.+|||
T Consensus 330 --~~--------~g~~~e-------~F~~Dt~~Wk~~V~~Y~~l~~--~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWV 390 (506)
T PF03141_consen 330 --SI--------PGISPE-------EFKEDTKHWKKRVSHYKKLLG--LAIKWGRIRNVMDMNAGYGGFAAALIDDPVWV 390 (506)
T ss_pred --Cc--------CCCCHH-------HHHHHHHHHHHHHHHHHHhhc--ccccccceeeeeeecccccHHHHHhccCCceE
Confidence 00 111111 246799999999888887654 34788999999999999999999999999999
Q ss_pred EEeccC-CCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675 290 ITNTLN-VDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY 368 (418)
Q Consensus 290 v~~alD-~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~ 368 (418)
| +++. ..++++.++++||+++.+|+|||.||++++|||+||+.++|..+.++++++.+|.||+|||||||++||.|..
T Consensus 391 M-NVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 391 M-NVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred E-EecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 9 5544 4578999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred cCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEE
Q 037675 369 CANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSA 409 (418)
Q Consensus 369 ~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~A 409 (418)
. .-..++.+++.+.|+..-++...+ +...|.+|.+
T Consensus 470 ~----vl~~v~~i~~~lrW~~~~~d~e~g--~~~~EkiL~~ 504 (506)
T PF03141_consen 470 D----VLEKVKKIAKSLRWEVRIHDTEDG--PDGPEKILIC 504 (506)
T ss_pred H----HHHHHHHHHHhCcceEEEEecCCC--CCCCceEEEE
Confidence 3 233467788887777665544222 2346777763
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.76 E-value=1.2e-17 Score=161.05 Aligned_cols=124 Identities=22% Similarity=0.355 Sum_probs=102.3
Q ss_pred CeEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHHHHcCC------CceeecccCCCCCCCCccceEEecCcCc
Q 037675 266 RIGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFIAARGL------FPLYLSLDHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a~eRGl------i~~~~~~~e~LPf~d~sFDlV~s~~~L~ 337 (418)
.+|||+|||||.++..+++. | ..+ +++|+|+.|++.+++|-. +.++++++++|||+|++||+|.++..|+
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g~g~v--~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVGTGEV--VGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcCCceE--EEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 59999999999999999987 3 344 358999999999988743 3467899999999999999999999999
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEecccCc----------------------------hh------------HHHH
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN----------------------------DE------------KKSA 377 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----------------------------ee------------~~~~ 377 (418)
+..+.+ ++|.|++|||||||.+++.++.... +. ..++
T Consensus 131 nv~d~~---~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~ 207 (238)
T COG2226 131 NVTDID---KALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEE 207 (238)
T ss_pred cCCCHH---HHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHH
Confidence 998765 9999999999999999888762211 00 1256
Q ss_pred HHHHHHHcCcEEEEEEE
Q 037675 378 LTRLIERFGYKKLKWVV 394 (418)
Q Consensus 378 ~~~l~~~~Gfk~l~W~~ 394 (418)
+..+++..||+.+.|..
T Consensus 208 l~~~~~~~gf~~i~~~~ 224 (238)
T COG2226 208 LKQMIEKAGFEEVRYEN 224 (238)
T ss_pred HHHHHHhcCceEEeeEe
Confidence 88889999999998754
No 4
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.71 E-value=2.2e-17 Score=132.64 Aligned_cols=91 Identities=30% Similarity=0.418 Sum_probs=75.8
Q ss_pred EEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCC---ceeecccCCCCCCCCccceEEecCcCcCCCChhH
Q 037675 269 FDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLF---PLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEK 344 (418)
Q Consensus 269 LDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli---~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~ 344 (418)
||+|||+|.++..|+++ +..++ ++|+++++++.++++... ....++.+++||++++||+|++..+++++. +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~--~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~---~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVT--GIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE---D 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEE--EEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS---H
T ss_pred CEecCcCCHHHHHHHhccCCEEE--EEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc---C
Confidence 89999999999999999 66665 479999999999887542 366689999999999999999999999993 3
Q ss_pred HHHHHHHhhccccCCcEEEE
Q 037675 345 LEFLMFDFDRILRAGGLFWL 364 (418)
Q Consensus 345 le~~L~Ei~RVLRPGG~~ii 364 (418)
...++.|+.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 45999999999999999975
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.70 E-value=4.1e-17 Score=157.10 Aligned_cols=105 Identities=27% Similarity=0.391 Sum_probs=75.8
Q ss_pred HHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCcc
Q 037675 257 VLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVF 327 (418)
Q Consensus 257 lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sF 327 (418)
.+...+| .+|||+|||||.++..++++ + ..+ +++|+|+.|++.++++ +. +.+..++++++||++++|
T Consensus 42 ~~~~~~g--~~vLDv~~GtG~~~~~l~~~~~~~~~v--~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sf 117 (233)
T PF01209_consen 42 LLGLRPG--DRVLDVACGTGDVTRELARRVGPNGKV--VGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSF 117 (233)
T ss_dssp HHT--S----EEEEET-TTSHHHHHHGGGSS---EE--EEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-E
T ss_pred ccCCCCC--CEEEEeCCChHHHHHHHHHHCCCccEE--EEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCce
Confidence 3445555 49999999999999999876 3 344 3589999999998775 22 456678999999999999
Q ss_pred ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675 328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY 368 (418)
Q Consensus 328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~ 368 (418)
|.|.++..+++..+.. .+|.|+.|||||||.++|.++.
T Consensus 118 D~v~~~fglrn~~d~~---~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 118 DAVTCSFGLRNFPDRE---RALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp EEEEEES-GGG-SSHH---HHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEHHhhHHhhCCHH---HHHHHHHHHcCCCeEEEEeecc
Confidence 9999999999987655 8999999999999999988863
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.70 E-value=1.8e-16 Score=154.56 Aligned_cols=129 Identities=21% Similarity=0.221 Sum_probs=100.6
Q ss_pred HccCCCCCCeEEEECCccChHHHHHhhc-Cc--EEEEeccCCCHHhHHHHHHcC---------CCceeecccCCCCCCCC
Q 037675 258 LALGSGGIRIGFDIGGGSGTFAARMAER-NV--TVITNTLNVDAPYSEFIAARG---------LFPLYLSLDHRFPFYDN 325 (418)
Q Consensus 258 L~l~~g~~r~VLDvGCGtG~faa~La~~-gV--~vv~~alD~s~~~l~~a~eRG---------li~~~~~~~e~LPf~d~ 325 (418)
+.+.++ .+|||+|||+|.++..|+++ +. .+ .++|++++|++.|+++. -+.+..++++++|++++
T Consensus 69 ~~~~~~--~~VLDlGcGtG~~~~~la~~~~~~~~V--~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~ 144 (261)
T PLN02233 69 SGAKMG--DRVLDLCCGSGDLAFLLSEKVGSDGKV--MGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDC 144 (261)
T ss_pred hCCCCC--CEEEEECCcCCHHHHHHHHHhCCCCEE--EEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCC
Confidence 345444 48999999999999998876 42 44 35899999999887652 12456688999999999
Q ss_pred ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc--------------------------h-------
Q 037675 326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--------------------------D------- 372 (418)
Q Consensus 326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--------------------------e------- 372 (418)
+||+|+++.++|++.++. .++.|+.|+|||||++++.++.... +
T Consensus 145 sfD~V~~~~~l~~~~d~~---~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~ 221 (261)
T PLN02233 145 YFDAITMGYGLRNVVDRL---KAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKS 221 (261)
T ss_pred CEeEEEEecccccCCCHH---HHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHH
Confidence 999999999999987655 8999999999999999888753211 0
Q ss_pred -----hHHHHHHHHHHHcCcEEEEEE
Q 037675 373 -----EKKSALTRLIERFGYKKLKWV 393 (418)
Q Consensus 373 -----e~~~~~~~l~~~~Gfk~l~W~ 393 (418)
...+++..+++..||+.+++.
T Consensus 222 s~~~f~s~~el~~ll~~aGF~~~~~~ 247 (261)
T PLN02233 222 SINEYLTGEELEKLALEAGFSSAKHY 247 (261)
T ss_pred HHHhcCCHHHHHHHHHHCCCCEEEEE
Confidence 012467789999999988643
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.62 E-value=7.2e-15 Score=148.52 Aligned_cols=123 Identities=21% Similarity=0.299 Sum_probs=97.9
Q ss_pred CCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCccceEEecCcC
Q 037675 265 IRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNVFDLVHASSGL 336 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L 336 (418)
..+|||||||+|.++..|+++ +..++ ++|+++.|++.+++ +|+ +.+..+++..+||++++||+|++..++
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~~v~--gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGANVK--GITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCCEEE--EEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 358999999999999999986 66664 47999999987654 344 345567888999999999999999999
Q ss_pred cCCCChhHHHHHHHHhhccccCCcEEEEEecccC----c------hh-----------------HHHHHHHHHHHcCcEE
Q 037675 337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA----N------DE-----------------KKSALTRLIERFGYKK 389 (418)
Q Consensus 337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~----~------ee-----------------~~~~~~~l~~~~Gfk~ 389 (418)
+|+.+.. .++.|+.|+|||||+|+|.++... . .+ ..+++..+++++||..
T Consensus 197 ~h~~d~~---~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~ 273 (340)
T PLN02244 197 EHMPDKR---KFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQD 273 (340)
T ss_pred hccCCHH---HHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCe
Confidence 9987654 899999999999999998765221 0 00 1246888999999998
Q ss_pred EEE
Q 037675 390 LKW 392 (418)
Q Consensus 390 l~W 392 (418)
++.
T Consensus 274 v~~ 276 (340)
T PLN02244 274 IKT 276 (340)
T ss_pred eEe
Confidence 764
No 8
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.59 E-value=1e-14 Score=128.54 Aligned_cols=130 Identities=24% Similarity=0.381 Sum_probs=97.9
Q ss_pred HHHHHHHHc-cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccce
Q 037675 251 DFLIDDVLA-LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDL 329 (418)
Q Consensus 251 ~~~I~~lL~-l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDl 329 (418)
...+.++.+ ... ..+|||+|||+|.++..|++.+..++ ++|+++.+++. +.. .......+..++++++||+
T Consensus 10 ~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~--g~D~~~~~~~~---~~~-~~~~~~~~~~~~~~~~fD~ 81 (161)
T PF13489_consen 10 ADLLERLLPRLKP--GKRVLDIGCGTGSFLRALAKRGFEVT--GVDISPQMIEK---RNV-VFDNFDAQDPPFPDGSFDL 81 (161)
T ss_dssp HHHHHHHHTCTTT--TSEEEEESSTTSHHHHHHHHTTSEEE--EEESSHHHHHH---TTS-EEEEEECHTHHCHSSSEEE
T ss_pred HHHHHHHhcccCC--CCEEEEEcCCCCHHHHHHHHhCCEEE--EEECCHHHHhh---hhh-hhhhhhhhhhhccccchhh
Confidence 345666654 333 35999999999999999999988765 58999999887 222 2222223355678999999
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-----------hh---------HHHHHHHHHHHcCcEE
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-----------DE---------KKSALTRLIERFGYKK 389 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-----------ee---------~~~~~~~l~~~~Gfk~ 389 (418)
|+|..+|+|..+ ...+|.++.++|||||++++.++.... .. ..+.+..++++.||+.
T Consensus 82 i~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~i 158 (161)
T PF13489_consen 82 IICNDVLEHLPD---PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEI 158 (161)
T ss_dssp EEEESSGGGSSH---HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEE
T ss_pred HhhHHHHhhccc---HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEE
Confidence 999999999975 449999999999999999998875310 00 1367999999999987
Q ss_pred EE
Q 037675 390 LK 391 (418)
Q Consensus 390 l~ 391 (418)
++
T Consensus 159 v~ 160 (161)
T PF13489_consen 159 VE 160 (161)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 9
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.58 E-value=2.1e-14 Score=138.75 Aligned_cols=122 Identities=18% Similarity=0.204 Sum_probs=97.4
Q ss_pred CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChh
Q 037675 266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPE 343 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~ 343 (418)
.+|||+|||+|.++..|+++ +..++ ++|+++.|++.++++++ .+..++.+.++ ++++||+|+++.++||..++.
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~~p~~~v~--gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~ 106 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARRWPGAVIE--ALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVVSNAALQWVPEHA 106 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHHCCCCEEE--EEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEEEehhhhhCCCHH
Confidence 58999999999999999987 45553 58999999999999875 77778888775 678999999999999986654
Q ss_pred HHHHHHHHhhccccCCcEEEEEecc------------------cCc---h---------hHHHHHHHHHHHcCcEEEEEE
Q 037675 344 KLEFLMFDFDRILRAGGLFWLDNFY------------------CAN---D---------EKKSALTRLIERFGYKKLKWV 393 (418)
Q Consensus 344 ~le~~L~Ei~RVLRPGG~~ii~~~~------------------~~~---e---------e~~~~~~~l~~~~Gfk~l~W~ 393 (418)
.++.++.|+|||||++++..+. +.. . ...+.+..+++.+||+...|.
T Consensus 107 ---~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 183 (255)
T PRK14103 107 ---DLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDAWE 183 (255)
T ss_pred ---HHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEEEe
Confidence 8999999999999999886321 000 0 013568889999999876666
Q ss_pred E
Q 037675 394 V 394 (418)
Q Consensus 394 ~ 394 (418)
.
T Consensus 184 ~ 184 (255)
T PRK14103 184 T 184 (255)
T ss_pred e
Confidence 5
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.57 E-value=1.9e-14 Score=140.62 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=101.0
Q ss_pred HccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCCccceEEe
Q 037675 258 LALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDNVFDLVHA 332 (418)
Q Consensus 258 L~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~sFDlV~s 332 (418)
+.+.++ .+|||+|||+|..+.+|++. +..++ ++|+++.|++.++++. .+.+..+++...|+++++||+|++
T Consensus 48 l~l~~~--~~VLDiGcG~G~~a~~la~~~~~~v~--giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s 123 (263)
T PTZ00098 48 IELNEN--SKVLDIGSGLGGGCKYINEKYGAHVH--GVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYS 123 (263)
T ss_pred CCCCCC--CEEEEEcCCCChhhHHHHhhcCCEEE--EEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEE
Confidence 345554 48999999999999999875 55654 5899999999988763 234455677888999999999999
Q ss_pred cCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-----hh-------------HHHHHHHHHHHcCcEEEEEE
Q 037675 333 SSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-----DE-------------KKSALTRLIERFGYKKLKWV 393 (418)
Q Consensus 333 ~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-----ee-------------~~~~~~~l~~~~Gfk~l~W~ 393 (418)
..+++|+.. .+...++.++.|+|||||+|++.++.... +. ..+.|..+++.+||+.+.+.
T Consensus 124 ~~~l~h~~~-~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 124 RDAILHLSY-ADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred hhhHHhCCH-HHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 888877642 24568999999999999999998863221 10 12568899999999998754
No 11
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.56 E-value=2.5e-14 Score=138.05 Aligned_cols=103 Identities=24% Similarity=0.337 Sum_probs=84.2
Q ss_pred cCCCCCCeEEEECCccChHHHHHhhc-C-------cEEEEeccCCCHHhHHHHHHc----CC-----CceeecccCCCCC
Q 037675 260 LGSGGIRIGFDIGGGSGTFAARMAER-N-------VTVITNTLNVDAPYSEFIAAR----GL-----FPLYLSLDHRFPF 322 (418)
Q Consensus 260 l~~g~~r~VLDvGCGtG~faa~La~~-g-------V~vv~~alD~s~~~l~~a~eR----Gl-----i~~~~~~~e~LPf 322 (418)
+.++...++|||+||||..|..+.+. + -.| +.+|+++.|+.++++| ++ +.++.+++|.|||
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V--~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF 173 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKV--TVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF 173 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceE--EEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC
Confidence 45566689999999999999888765 1 222 2479999999876554 44 2334579999999
Q ss_pred CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 323 YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 323 ~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
++++||+...+..+.++.+++ ++|.|++|||||||+|.+.+|
T Consensus 174 dd~s~D~yTiafGIRN~th~~---k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 174 DDDSFDAYTIAFGIRNVTHIQ---KALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred CCCcceeEEEecceecCCCHH---HHHHHHHHhcCCCcEEEEEEc
Confidence 999999999999999998877 999999999999999988776
No 12
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.55 E-value=2.4e-14 Score=137.62 Aligned_cols=100 Identities=18% Similarity=0.260 Sum_probs=85.1
Q ss_pred CCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEecCcCcCCCCh
Q 037675 264 GIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP 342 (418)
Q Consensus 264 ~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~ 342 (418)
...+|||+|||+|.++..|++++..++ ++|+++.|++.++++.. ..+..++.+.+|+++++||+|+++.++++..+.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~--~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~ 119 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVT--ALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL 119 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEE--EEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH
Confidence 346899999999999999998886664 57999999999988753 245667889999999999999999999877654
Q ss_pred hHHHHHHHHhhccccCCcEEEEEecc
Q 037675 343 EKLEFLMFDFDRILRAGGLFWLDNFY 368 (418)
Q Consensus 343 ~~le~~L~Ei~RVLRPGG~~ii~~~~ 368 (418)
. .++.|+.|+|||||+++++.+.
T Consensus 120 ~---~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 120 S---TALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred H---HHHHHHHHHcCCCeEEEEEeCC
Confidence 4 8999999999999999998753
No 13
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.55 E-value=2.9e-14 Score=143.46 Aligned_cols=121 Identities=13% Similarity=0.130 Sum_probs=98.1
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC-------CCceeecccCCCCCCCCccceEEecCcCcC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG-------LFPLYLSLDHRFPFYDNVFDLVHASSGLDV 338 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG-------li~~~~~~~e~LPf~d~sFDlV~s~~~L~~ 338 (418)
.+|||||||+|.++..|++.|..++ ++|.++.|++.|+++. -+.+..++++.+|+++++||+|+|..+++|
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~~V~--GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGATVT--GVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCCEEE--EEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 4899999999999999998887664 5899999999887641 134556788899998999999999999999
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEEecccC--------------------ch------hHHHHHHHHHHHcCcEEEE
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA--------------------ND------EKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~--------------------~e------e~~~~~~~l~~~~Gfk~l~ 391 (418)
..++. .+|.++.|+|||||.++++..... +. -..+++..++++.||+.+.
T Consensus 211 v~d~~---~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~ 286 (322)
T PLN02396 211 VANPA---EFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKE 286 (322)
T ss_pred cCCHH---HHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEE
Confidence 98765 899999999999999998864211 00 0136789999999998764
No 14
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.54 E-value=4.8e-14 Score=136.44 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=95.7
Q ss_pred CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCC-CCCCccceEEecCcC
Q 037675 265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFP-FYDNVFDLVHASSGL 336 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LP-f~d~sFDlV~s~~~L 336 (418)
..+|||+|||+|.++..|++++..++ ++|+++.|++.|+++ |+ +.++.++.+.++ +++++||+|++..++
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~~v~--~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGHQVI--LCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCCEEE--EEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 35899999999999999999987764 579999999887664 33 234556666663 678999999999999
Q ss_pred cCCCChhHHHHHHHHhhccccCCcEEEEEecccCc------------------------------hhHHHHHHHHHHHcC
Q 037675 337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN------------------------------DEKKSALTRLIERFG 386 (418)
Q Consensus 337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~------------------------------ee~~~~~~~l~~~~G 386 (418)
++..++. .++.++.|+|||||++++..+.... ....+.+..+++..|
T Consensus 123 ~~~~~~~---~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aG 199 (255)
T PRK11036 123 EWVADPK---SVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAG 199 (255)
T ss_pred HhhCCHH---HHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCC
Confidence 9987665 8999999999999999775432110 011356888999999
Q ss_pred cEEEEEE
Q 037675 387 YKKLKWV 393 (418)
Q Consensus 387 fk~l~W~ 393 (418)
|+.+.+.
T Consensus 200 f~~~~~~ 206 (255)
T PRK11036 200 WQIMGKT 206 (255)
T ss_pred CeEeeee
Confidence 9987544
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.53 E-value=1.5e-13 Score=130.10 Aligned_cols=104 Identities=22% Similarity=0.296 Sum_probs=82.3
Q ss_pred HHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCcc
Q 037675 257 VLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVF 327 (418)
Q Consensus 257 lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sF 327 (418)
.+.+.++ .+|||+|||+|.++..+++. + ..++ ++|+++.|++.++++ ++ +.++.++.+.+|+++++|
T Consensus 40 ~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 115 (231)
T TIGR02752 40 RMNVQAG--TSALDVCCGTADWSIALAEAVGPEGHVI--GLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSF 115 (231)
T ss_pred hcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCc
Confidence 3345555 48999999999999999875 3 3443 579999999877653 22 244557888889999999
Q ss_pred ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
|+|++..++++..+.. .++.|+.|+|||||++++.++
T Consensus 116 D~V~~~~~l~~~~~~~---~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYM---QVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cEEEEecccccCCCHH---HHHHHHHHHcCcCeEEEEEEC
Confidence 9999999998876654 899999999999999987664
No 16
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.52 E-value=1.1e-13 Score=139.06 Aligned_cols=124 Identities=21% Similarity=0.252 Sum_probs=94.4
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHH--Hc--C---CCceeecccCCCCCCCCccceEEecCcCcC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIA--AR--G---LFPLYLSLDHRFPFYDNVFDLVHASSGLDV 338 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~--eR--G---li~~~~~~~e~LPf~d~sFDlV~s~~~L~~ 338 (418)
++|||||||+|.++.+|++.|...| +++|+++.|+..+. .+ + -+.+...+.+.+|+ +++||+|+|..+++|
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V-~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLV-VGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEE-EEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 5899999999999999999874322 45899998875422 21 1 13445568889998 889999999999999
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEEecccCc--------hh------------HHHHHHHHHHHcCcEEEEEEE
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--------DE------------KKSALTRLIERFGYKKLKWVV 394 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--------ee------------~~~~~~~l~~~~Gfk~l~W~~ 394 (418)
..++. .+|.++.|+|||||.+++++....+ .+ ..+.+..+++++||+.++..-
T Consensus 202 ~~dp~---~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 202 RRSPL---DHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred cCCHH---HHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 87665 8999999999999999887642111 00 124688999999999987654
No 17
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.51 E-value=1.7e-13 Score=137.50 Aligned_cols=127 Identities=19% Similarity=0.164 Sum_probs=93.4
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHH--Hc-----CCCceeecccCCCCCCCCccceEEecCcCcC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIA--AR-----GLFPLYLSLDHRFPFYDNVFDLVHASSGLDV 338 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~--eR-----Gli~~~~~~~e~LPf~d~sFDlV~s~~~L~~ 338 (418)
++|||+|||+|.++..++..|...+ +++|+++.|+..+. ++ ..+.+...+.+.+|.. .+||+|+|+.+++|
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v-~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSL-VGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEE-EEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhc
Confidence 5899999999999999998875422 46899998875432 11 1123334567778764 48999999999999
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEEecccCc---------hh-----------HHHHHHHHHHHcCcEEEEEEEccc
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN---------DE-----------KKSALTRLIERFGYKKLKWVVGEK 397 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~---------ee-----------~~~~~~~l~~~~Gfk~l~W~~~~k 397 (418)
+.++. .+|.|++|+|||||.+++.+....+ .. ..+.+..+++++||+.++......
T Consensus 201 ~~dp~---~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~ 276 (314)
T TIGR00452 201 RKSPL---EHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLK 276 (314)
T ss_pred cCCHH---HHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEeccC
Confidence 87665 8999999999999999987542111 00 124678889999999998665443
No 18
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.51 E-value=2.7e-13 Score=126.79 Aligned_cols=132 Identities=16% Similarity=0.206 Sum_probs=91.7
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCCCCCCc
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFPFYDNV 326 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LPf~d~s 326 (418)
.+.+.+...++ .+|||+|||+|.++.+|+++|..++ ++|+|+.|++.+++ +++ +.....+...+++ +++
T Consensus 21 ~l~~~l~~~~~--~~vLDiGcG~G~~a~~La~~g~~V~--gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 95 (197)
T PRK11207 21 EVLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGFDVT--AWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGE 95 (197)
T ss_pred HHHHhcccCCC--CcEEEECCCCCHHHHHHHHCCCEEE--EEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCC
Confidence 33444444433 4899999999999999999987664 57999999986654 344 2334456666666 467
Q ss_pred cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-------h---hHHHHHHHHHHHcCcEEEEE
Q 037675 327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-------D---EKKSALTRLIERFGYKKLKW 392 (418)
Q Consensus 327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-------e---e~~~~~~~l~~~~Gfk~l~W 392 (418)
||+|++..++|+.. +.....++.++.|+|||||++++...+... . -..+++..+++ ||+.+.-
T Consensus 96 fD~I~~~~~~~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 96 YDFILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred cCEEEEecchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 99999999998764 445679999999999999997554332211 0 01234566665 7877654
No 19
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.51 E-value=2.7e-13 Score=137.36 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=107.7
Q ss_pred CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcC---CCceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675 266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARG---LFPLYLSLDHRFPFYDNVFDLVHASSGLDVGG 340 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRG---li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~ 340 (418)
.+|||+|||+|.++..+++. +..++ ++|.++.|++.++++. -+.+..++.+.+|+++++||+|++..+++++.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~Vt--gVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVT--ILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 58999999999999888765 33443 4799999999887752 23566788889999999999999999999987
Q ss_pred ChhHHHHHHHHhhccccCCcEEEEEecccC----ch---------hHHHHHHHHHHHcCcEEEEEEEcccCC-C---Ccc
Q 037675 341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCA----ND---------EKKSALTRLIERFGYKKLKWVVGEKGE-T---GKS 403 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~----~e---------e~~~~~~~l~~~~Gfk~l~W~~~~k~d-~---~~~ 403 (418)
++. .++.|+.|+|||||.+++.++... .. ...+++.+++++.||+.+.+....... . ..+
T Consensus 193 d~~---~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~ 269 (340)
T PLN02490 193 DPQ---RGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHG 269 (340)
T ss_pred CHH---HHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhcccccccc
Confidence 765 799999999999999987653211 00 123678899999999999876533221 1 112
Q ss_pred -ceEEEEEEEcCCC
Q 037675 404 -EVYLSAVLQKPVR 416 (418)
Q Consensus 404 -e~~l~Ai~qKP~~ 416 (418)
.+-.+...+||.+
T Consensus 270 ~~~~~~v~~~k~~~ 283 (340)
T PLN02490 270 LIMGCSVTGVKPAS 283 (340)
T ss_pred ceeeEEEEEecccc
Confidence 2225556778764
No 20
>PRK05785 hypothetical protein; Provisional
Probab=99.49 E-value=2.1e-13 Score=130.47 Aligned_cols=88 Identities=19% Similarity=0.291 Sum_probs=76.7
Q ss_pred CeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhH
Q 037675 266 RIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEK 344 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~ 344 (418)
.+|||+|||||.++..|+++ +..++ ++|++++|++.++++. ...+++++.+||++++||+|+++.+++++.+++
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~~v~--gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~- 127 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKYYVV--ALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHASDNIE- 127 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCCEEE--EECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhccCCHH-
Confidence 58999999999999999988 55554 5899999999998874 456788999999999999999999999886654
Q ss_pred HHHHHHHhhccccCCc
Q 037675 345 LEFLMFDFDRILRAGG 360 (418)
Q Consensus 345 le~~L~Ei~RVLRPGG 360 (418)
.++.|+.|||||.+
T Consensus 128 --~~l~e~~RvLkp~~ 141 (226)
T PRK05785 128 --KVIAEFTRVSRKQV 141 (226)
T ss_pred --HHHHHHHHHhcCce
Confidence 89999999999953
No 21
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.49 E-value=6.5e-13 Score=124.56 Aligned_cols=174 Identities=17% Similarity=0.179 Sum_probs=111.4
Q ss_pred cccccccccCCcHH-HHHHHH--ccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC--C--Cc
Q 037675 239 ENQRYIKARGKNDF-LIDDVL--ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG--L--FP 311 (418)
Q Consensus 239 e~~~W~~~~~~y~~-~I~~lL--~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG--l--i~ 311 (418)
..+-|.+....|+. .-.+++ .|+.+.++++||+|||.|.|+..|+.+--.+ .++|+++..++.|++|- . +.
T Consensus 15 ~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~L--lavDis~~Al~~Ar~Rl~~~~~V~ 92 (201)
T PF05401_consen 15 NDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRL--LAVDISPRALARARERLAGLPHVE 92 (201)
T ss_dssp SSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEE--EEEES-HHHHHHHHHHTTT-SSEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCce--EEEeCCHHHHHHHHHhcCCCCCeE
Confidence 44566666555665 233333 4778888999999999999999999984222 24699999999999873 2 23
Q ss_pred eeecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc------cCchhHHHHHHHHHHHc
Q 037675 312 LYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY------CANDEKKSALTRLIERF 385 (418)
Q Consensus 312 ~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~------~~~ee~~~~~~~l~~~~ 385 (418)
+.+.+.... .|++.||+|+++.+++++.+.+++..++..+...|+|||.+++.+.. |....-.+.+.+++.+.
T Consensus 93 ~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 93 WIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH 171 (201)
T ss_dssp EEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH
T ss_pred EEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH
Confidence 344444332 57899999999999999988788899999999999999999998752 11111123455666554
Q ss_pred CcEEEEEEEcccCCCCccceEEEEEEEcCCCCC
Q 037675 386 GYKKLKWVVGEKGETGKSEVYLSAVLQKPVRVS 418 (418)
Q Consensus 386 Gfk~l~W~~~~k~d~~~~e~~l~Ai~qKP~~~s 418 (418)
+..+.-..-... ..+|-.+.+-++||++.|
T Consensus 172 -~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 201 (201)
T PF05401_consen 172 -LTEVERVECRGG--SPNEDCLLARFRNPVSAS 201 (201)
T ss_dssp -SEEEEEEEEE-S--STTSEEEEEEEE--SSS-
T ss_pred -hhheeEEEEcCC--CCCCceEeeeecCCcCCC
Confidence 555543221211 246778899999999876
No 22
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.49 E-value=3.3e-13 Score=131.42 Aligned_cols=129 Identities=18% Similarity=0.271 Sum_probs=97.0
Q ss_pred ccCCCCCCeEEEECCccChHHHHHhhc-Cc--EEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccce
Q 037675 259 ALGSGGIRIGFDIGGGSGTFAARMAER-NV--TVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDL 329 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGtG~faa~La~~-gV--~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDl 329 (418)
.+.+| .+|||+|||+|..+..+++. +. .+ +++|+++.|++.|+++ |+ +.+..++.+.+|+++++||+
T Consensus 74 ~~~~g--~~VLDiG~G~G~~~~~~a~~~g~~~~v--~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~ 149 (272)
T PRK11873 74 ELKPG--ETVLDLGSGGGFDCFLAARRVGPTGKV--IGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDV 149 (272)
T ss_pred cCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEE--EEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeE
Confidence 35555 49999999999887766654 32 34 3579999999988764 33 23445788889999999999
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch-------------------hHHHHHHHHHHHcCcEEE
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND-------------------EKKSALTRLIERFGYKKL 390 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e-------------------e~~~~~~~l~~~~Gfk~l 390 (418)
|++..+++++.+.. .++.|+.|+|||||++++.+.....+ ...+++..+++..||..+
T Consensus 150 Vi~~~v~~~~~d~~---~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 150 IISNCVINLSPDKE---RVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred EEEcCcccCCCCHH---HHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCce
Confidence 99999998876554 89999999999999999977532210 123468889999999987
Q ss_pred EEEE
Q 037675 391 KWVV 394 (418)
Q Consensus 391 ~W~~ 394 (418)
....
T Consensus 227 ~i~~ 230 (272)
T PRK11873 227 TIQP 230 (272)
T ss_pred EEEe
Confidence 6533
No 23
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.48 E-value=3.3e-13 Score=141.46 Aligned_cols=122 Identities=20% Similarity=0.296 Sum_probs=97.6
Q ss_pred CeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc--CC---CceeecccCCCCCCCCccceEEecCcCcCC
Q 037675 266 RIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR--GL---FPLYLSLDHRFPFYDNVFDLVHASSGLDVG 339 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR--Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~ 339 (418)
.+|||||||+|..+..|++. +..++ ++|+|+.+++.|+++ +. +.+..++...+|+++++||+|+|..+++|+
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~~~~v~--gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~ 345 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENFDVHVV--GIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHI 345 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhcCCEEE--EEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccccc
Confidence 58999999999999999876 66654 589999999988764 22 234557788889999999999999999999
Q ss_pred CChhHHHHHHHHhhccccCCcEEEEEecccCc----hh-------------HHHHHHHHHHHcCcEEEEE
Q 037675 340 GQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN----DE-------------KKSALTRLIERFGYKKLKW 392 (418)
Q Consensus 340 ~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----ee-------------~~~~~~~l~~~~Gfk~l~W 392 (418)
.++. .++.|+.|+|||||++++.++.... ++ ..+.+..++++.||+.+.+
T Consensus 346 ~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 346 QDKP---ALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred CCHH---HHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence 7765 8999999999999999998763221 10 1245888999999998854
No 24
>PRK08317 hypothetical protein; Provisional
Probab=99.43 E-value=2.2e-12 Score=120.56 Aligned_cols=129 Identities=23% Similarity=0.312 Sum_probs=96.8
Q ss_pred HHHccCCCCCCeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHc--CC---CceeecccCCCCCCCCcc
Q 037675 256 DVLALGSGGIRIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAAR--GL---FPLYLSLDHRFPFYDNVF 327 (418)
Q Consensus 256 ~lL~l~~g~~r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eR--Gl---i~~~~~~~e~LPf~d~sF 327 (418)
+.+.+.++ .+|||+|||+|.++..++++. ..+ +++|+++.+++.++++ +. +.+..++.+.+|+++++|
T Consensus 13 ~~~~~~~~--~~vLdiG~G~G~~~~~~a~~~~~~~~v--~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 13 ELLAVQPG--DRVLDVGCGPGNDARELARRVGPEGRV--VGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHcCCCCC--CEEEEeCCCCCHHHHHHHHhcCCCcEE--EEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 33445544 589999999999999998762 344 3579999999988776 11 234456778888999999
Q ss_pred ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC-----c--h-----------------hHHHHHHHHHH
Q 037675 328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA-----N--D-----------------EKKSALTRLIE 383 (418)
Q Consensus 328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-----~--e-----------------e~~~~~~~l~~ 383 (418)
|+|++..+++++.++. .++.++.++|||||++++.++.+. . . .....+..+++
T Consensus 89 D~v~~~~~~~~~~~~~---~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 165 (241)
T PRK08317 89 DAVRSDRVLQHLEDPA---RALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFR 165 (241)
T ss_pred eEEEEechhhccCCHH---HHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 9999999999987665 899999999999999988764211 0 0 01134778899
Q ss_pred HcCcEEEE
Q 037675 384 RFGYKKLK 391 (418)
Q Consensus 384 ~~Gfk~l~ 391 (418)
..||..+.
T Consensus 166 ~aGf~~~~ 173 (241)
T PRK08317 166 EAGLTDIE 173 (241)
T ss_pred HcCCCcee
Confidence 99998764
No 25
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.42 E-value=7.8e-13 Score=110.67 Aligned_cols=98 Identities=19% Similarity=0.293 Sum_probs=75.4
Q ss_pred CeEEEECCccChHHHHHhh--cCcEEEEeccCCCHHhHHHHHHcC----C---Cceeeccc-CCCCCCCCccceEEecC-
Q 037675 266 RIGFDIGGGSGTFAARMAE--RNVTVITNTLNVDAPYSEFIAARG----L---FPLYLSLD-HRFPFYDNVFDLVHASS- 334 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~--~gV~vv~~alD~s~~~l~~a~eRG----l---i~~~~~~~-e~LPf~d~sFDlV~s~~- 334 (418)
.+|||+|||+|.++.++++ .+..++ ++|+++.+++.++++- . +.+++++. .... ....||+|++..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVV--GVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-FLEPFDLVICSGF 79 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEE--EEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-TSSCEEEEEECSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEE--EEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-cCCCCCEEEECCC
Confidence 4899999999999999999 577765 5899999998876653 2 34455666 3333 344599999998
Q ss_pred cCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
+++++.+.+..+.++.++.+.|||||+++|..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 66655444566789999999999999998874
No 26
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.41 E-value=6.7e-12 Score=118.53 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=80.3
Q ss_pred CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEecCcCcCCCCh
Q 037675 266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP 342 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~ 342 (418)
.+|||+|||+|.++..|++. +..+. ++|+++.|++.|+++.. +.+..+++.. |+++++||+|++..+++|+. +
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~--giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~-p 120 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIY--GVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN-P 120 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEE--EEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC-H
Confidence 58999999999999999886 45553 58999999999988532 3556666666 89999999999999999985 5
Q ss_pred hHHHHHHHHhhccccCCcEEEEEeccc
Q 037675 343 EKLEFLMFDFDRILRAGGLFWLDNFYC 369 (418)
Q Consensus 343 ~~le~~L~Ei~RVLRPGG~~ii~~~~~ 369 (418)
+.+..++.|+.|++ +++++|.+.+.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 67889999999998 57888877643
No 27
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.40 E-value=1.3e-12 Score=122.44 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=93.3
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC--CceeecccCCCCCCCCccceEEecCcCcCCCChh
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL--FPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPE 343 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl--i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~ 343 (418)
.+|||+|||+|.++..|++.+..+-..++|+++.+++.+.++.. +.++.++.+.+|+++++||+|++..++++..++.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~ 115 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLS 115 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHH
Confidence 58999999999999999987522211357999999988887642 3556678888999999999999999999886554
Q ss_pred HHHHHHHHhhccccCCcEEEEEecccCch-h-------------HHHHHHHHHHHcCcEEEEEE
Q 037675 344 KLEFLMFDFDRILRAGGLFWLDNFYCAND-E-------------KKSALTRLIERFGYKKLKWV 393 (418)
Q Consensus 344 ~le~~L~Ei~RVLRPGG~~ii~~~~~~~e-e-------------~~~~~~~l~~~~Gfk~l~W~ 393 (418)
.++.++.|+|||||.+++..+..... + ..+.+..+++.. |+.+.+.
T Consensus 116 ---~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 116 ---QALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred ---HHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 89999999999999999887633221 0 113466667666 7655543
No 28
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.40 E-value=1.7e-12 Score=125.21 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=77.2
Q ss_pred CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEecCcCcCCCCh
Q 037675 266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP 342 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~ 342 (418)
.+|||+|||+|.++..|+++ +..++ ++|+++.|++.++++.- +.+..++.+.++ ++++||+|+++.++++..+.
T Consensus 33 ~~vLDiGcG~G~~~~~la~~~~~~~v~--gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~ 109 (258)
T PRK01683 33 RYVVDLGCGPGNSTELLVERWPAARIT--GIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLPDH 109 (258)
T ss_pred CEEEEEcccCCHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCCCH
Confidence 58999999999999999986 34443 57999999999987632 345556666664 56799999999999988655
Q ss_pred hHHHHHHHHhhccccCCcEEEEEe
Q 037675 343 EKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 343 ~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
. .++.++.|+|||||.+++..
T Consensus 110 ~---~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 110 L---ELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred H---HHHHHHHHhcCCCcEEEEEC
Confidence 4 89999999999999998864
No 29
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.39 E-value=3.1e-12 Score=123.58 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=78.2
Q ss_pred CeEEEECCccChHHHHHhhc----CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecC
Q 037675 266 RIGFDIGGGSGTFAARMAER----NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASS 334 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~----gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~ 334 (418)
.+|||+|||+|..+..|++. +..++ ++|+++.|++.++++ +. +.++.++...+|++ .+|+|+++.
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~--gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKII--AIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEE--EEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 48999999999999888762 45554 589999999988765 22 34556777788765 499999999
Q ss_pred cCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675 335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY 368 (418)
Q Consensus 335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~ 368 (418)
++|+..+ .....++.++.|+|||||.|++.+.+
T Consensus 134 ~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 134 TLQFLEP-SERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 9998764 34568999999999999999998753
No 30
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.38 E-value=2.8e-12 Score=120.84 Aligned_cols=122 Identities=21% Similarity=0.303 Sum_probs=92.6
Q ss_pred eEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCcCc
Q 037675 267 IGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~ 337 (418)
+|||||||+|.++..+++. +..++ ++|+++.+++.+.++ |+ +.+...+..+.|++ ++||+|++..+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~--gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLH--GYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 7999999999999999876 35554 479999999877663 33 24445566555664 5899999999999
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEecccCc------h------hHHHHHHHHHHHcCcEEEEEEE
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN------D------EKKSALTRLIERFGYKKLKWVV 394 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~------e------e~~~~~~~l~~~~Gfk~l~W~~ 394 (418)
+..+. +.++.++.|+|||||++++.++.... + .....|..++++.||+.++...
T Consensus 79 ~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 79 HIKDK---MDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred hCCCH---HHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 88664 48999999999999999988763210 0 0135688899999999887543
No 31
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.38 E-value=2.7e-11 Score=113.84 Aligned_cols=97 Identities=22% Similarity=0.271 Sum_probs=78.1
Q ss_pred CeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHcC-------CCceeecccCCCCCCCCccceEEecCc
Q 037675 266 RIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAARG-------LFPLYLSLDHRFPFYDNVFDLVHASSG 335 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eRG-------li~~~~~~~e~LPf~d~sFDlV~s~~~ 335 (418)
.+|||+|||+|.++..+++.+ ..++ ++|+++.+++.+.++- .+.+..++...+++.+++||+|+++.+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~--~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVV--GLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEE--EEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 589999999999999998764 4443 5799999998776641 124445677778888899999999999
Q ss_pred CcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+++..+.. .++.++.++|+|||++++.+.
T Consensus 131 l~~~~~~~---~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 LRNVPDID---KALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cccCCCHH---HHHHHHHHhccCCcEEEEEEe
Confidence 99886654 889999999999999987654
No 32
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.38 E-value=6.9e-13 Score=110.32 Aligned_cols=90 Identities=32% Similarity=0.463 Sum_probs=71.7
Q ss_pred EEEECCccChHHHHHhhc---C--cEEEEeccCCCHHhHHHHHHcC----C-CceeecccCCCCCCCCccceEEecCc-C
Q 037675 268 GFDIGGGSGTFAARMAER---N--VTVITNTLNVDAPYSEFIAARG----L-FPLYLSLDHRFPFYDNVFDLVHASSG-L 336 (418)
Q Consensus 268 VLDvGCGtG~faa~La~~---g--V~vv~~alD~s~~~l~~a~eRG----l-i~~~~~~~e~LPf~d~sFDlV~s~~~-L 336 (418)
|||+|||+|..+..+++. + ..++ ++|+++.|++.++++. . +.+++++++++|+.+++||+|+++.. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~--gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVI--GVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEE--EEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEE--EEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 799999999999999876 3 5553 5899999999888765 3 35566888999999999999999654 8
Q ss_pred cCCCChhHHHHHHHHhhccccCCc
Q 037675 337 DVGGQPEKLEFLMFDFDRILRAGG 360 (418)
Q Consensus 337 ~~~~~~~~le~~L~Ei~RVLRPGG 360 (418)
++. ++..++.++.++.++|||||
T Consensus 79 ~~~-~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHL-SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGS-SHHHHHHHHHHHHHTEEEEE
T ss_pred CCC-CHHHHHHHHHHHHHHhCCCC
Confidence 885 45678899999999999998
No 33
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.37 E-value=5.5e-12 Score=124.48 Aligned_cols=143 Identities=14% Similarity=0.173 Sum_probs=96.0
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC-CceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGG 340 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~ 340 (418)
.+|||+|||+|.++.+|+++|..++ ++|.++.+++.+++ .++ +.+...+....++ +++||+|++..++++..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~--avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVT--AVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLN 198 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEE--EEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCC
Confidence 3899999999999999999987764 58999998876543 454 1223344545444 78899999999998864
Q ss_pred ChhHHHHHHHHhhccccCCcEEEEEecccCc------h----hHHHHHHHHHHHcCcEEEEEEEcc----cCCC-Ccc--
Q 037675 341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCAN------D----EKKSALTRLIERFGYKKLKWVVGE----KGET-GKS-- 403 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~------e----e~~~~~~~l~~~~Gfk~l~W~~~~----k~d~-~~~-- 403 (418)
++.+..++.++.|+|||||++++..+.... + -...++.++++. |+.+++.-.. +.|. +..
T Consensus 199 -~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~e~~~~~~~~~~~g~~~~ 275 (287)
T PRK12335 199 -RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYNENVGHLHKTDENGNRIK 275 (287)
T ss_pred -HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEeccccchhhhccCCCeee
Confidence 456779999999999999997664332110 0 113456666654 7777764222 3331 111
Q ss_pred ceEEEEEEEcC
Q 037675 404 EVYLSAVLQKP 414 (418)
Q Consensus 404 e~~l~Ai~qKP 414 (418)
-.+.+.+.||+
T Consensus 276 ~~~~~~~a~k~ 286 (287)
T PRK12335 276 LRFATLLAKKV 286 (287)
T ss_pred eeeeeeccccC
Confidence 23456667776
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.35 E-value=6.7e-12 Score=117.26 Aligned_cols=122 Identities=11% Similarity=0.121 Sum_probs=86.2
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC-CceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGG 340 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~ 340 (418)
.+|||+|||+|.++.+|+++|..|+ ++|+++.|++.+++ .|+ +.....+....++ +++||+|+++.++++..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~~V~--~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~ 108 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGYDVR--AWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFIFSTVVFMFLQ 108 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCCeEE--EEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEEEEecccccCC
Confidence 4899999999999999999986664 57999999986543 354 1223344555555 46799999999998774
Q ss_pred ChhHHHHHHHHhhccccCCcEEEEEecccCc----------hhHHHHHHHHHHHcCcEEEEEE
Q 037675 341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCAN----------DEKKSALTRLIERFGYKKLKWV 393 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----------ee~~~~~~~l~~~~Gfk~l~W~ 393 (418)
. ...+.++.++.|+|||||++++....... .-..+++..++. +|+.+.|.
T Consensus 109 ~-~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 109 A-GRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred H-HHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 3 45678999999999999996554332110 011344556555 48888776
No 35
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.35 E-value=8.4e-12 Score=123.03 Aligned_cols=129 Identities=24% Similarity=0.288 Sum_probs=86.5
Q ss_pred HccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHH----cCCC---ceeecccCCCCCCCCccce
Q 037675 258 LALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAA----RGLF---PLYLSLDHRFPFYDNVFDL 329 (418)
Q Consensus 258 L~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~e----RGli---~~~~~~~e~LPf~d~sFDl 329 (418)
+.+++|. +|||||||.|+++.+++++ |+.|++ +.+|++|.+.+++ +|+. .+...+..+++. +||.
T Consensus 58 ~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~g--itlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~ 130 (273)
T PF02353_consen 58 LGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTG--ITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDR 130 (273)
T ss_dssp TT--TT---EEEEES-TTSHHHHHHHHHH--EEEE--EES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SE
T ss_pred hCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEE--EECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCE
Confidence 3577774 9999999999999999998 988764 7889999887654 4652 233344444443 9999
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-----------hhH------------HHHHHHHHHHcC
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-----------DEK------------KSALTRLIERFG 386 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-----------ee~------------~~~~~~l~~~~G 386 (418)
|++..++.|... .+.+.++.++.|+|||||.+++....... +-+ ..++...++..|
T Consensus 131 IvSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~ 209 (273)
T PF02353_consen 131 IVSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAG 209 (273)
T ss_dssp EEEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT
T ss_pred EEEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCC
Confidence 999999999864 45679999999999999999876542211 001 144666788899
Q ss_pred cEEEEEEE
Q 037675 387 YKKLKWVV 394 (418)
Q Consensus 387 fk~l~W~~ 394 (418)
|+...|..
T Consensus 210 l~v~~~~~ 217 (273)
T PF02353_consen 210 LEVEDVEN 217 (273)
T ss_dssp -EEEEEEE
T ss_pred EEEEEEEE
Confidence 99887765
No 36
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.34 E-value=3.4e-12 Score=113.73 Aligned_cols=98 Identities=19% Similarity=0.368 Sum_probs=79.5
Q ss_pred CeEEEECCccChHHHHHhh-c--CcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCC--CCCCccceEEecC
Q 037675 266 RIGFDIGGGSGTFAARMAE-R--NVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFP--FYDNVFDLVHASS 334 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~-~--gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LP--f~d~sFDlV~s~~ 334 (418)
.+|||+|||+|.++..|++ . +..++ ++|+++.|++.|++ .++ +.+.+++.++++ ++ +.||+|++..
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~--gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKII--GVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEE--EEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEE--EEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 4899999999999999994 3 45654 48999999998876 344 355567777777 66 8999999999
Q ss_pred cCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675 335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC 369 (418)
Q Consensus 335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~ 369 (418)
++++..++. .++.++.|+|||||.+++.++..
T Consensus 82 ~l~~~~~~~---~~l~~~~~~lk~~G~~i~~~~~~ 113 (152)
T PF13847_consen 82 VLHHFPDPE---KVLKNIIRLLKPGGILIISDPNH 113 (152)
T ss_dssp TGGGTSHHH---HHHHHHHHHEEEEEEEEEEEEEH
T ss_pred chhhccCHH---HHHHHHHHHcCCCcEEEEEECCh
Confidence 998886554 89999999999999999988763
No 37
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.34 E-value=1.5e-11 Score=117.64 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=78.8
Q ss_pred CeEEEECCccChHHHHHhhc----CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecC
Q 037675 266 RIGFDIGGGSGTFAARMAER----NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASS 334 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~----gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~ 334 (418)
.+|||+|||+|.++..++++ +..++ ++|+++.|++.|+++ +. +.+..++...+|++ .+|+|++..
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~--gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKII--GIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEE--EEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 58999999999999988874 44554 579999999988764 21 24556788888875 489999999
Q ss_pred cCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675 335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC 369 (418)
Q Consensus 335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~ 369 (418)
++|+..+ .+...++.++.|+|||||.+++.+.+.
T Consensus 131 ~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 TLQFLPP-EDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred chhhCCH-HHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 9998754 345689999999999999999987643
No 38
>PRK04266 fibrillarin; Provisional
Probab=99.33 E-value=4.7e-11 Score=114.70 Aligned_cols=128 Identities=17% Similarity=0.182 Sum_probs=84.0
Q ss_pred HccCCCCCCeEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHH----HHcCCCceeecccCC----CCCCCCcc
Q 037675 258 LALGSGGIRIGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFI----AARGLFPLYLSLDHR----FPFYDNVF 327 (418)
Q Consensus 258 L~l~~g~~r~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a----~eRGli~~~~~~~e~----LPf~d~sF 327 (418)
+++.+| .+|||+|||+|.++..|++. + -.+ .++|.++.|++.+ +++.-+..+.++... .++ +++|
T Consensus 68 l~i~~g--~~VlD~G~G~G~~~~~la~~v~~g~V--~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~ 142 (226)
T PRK04266 68 FPIKKG--SKVLYLGAASGTTVSHVSDIVEEGVV--YAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKV 142 (226)
T ss_pred CCCCCC--CEEEEEccCCCHHHHHHHHhcCCCeE--EEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccC
Confidence 456666 48999999999999999886 2 233 3579999888743 333223444555433 122 3569
Q ss_pred ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE------ecccCchhHHHHHHHHHHHcCcEEEEEEEc
Q 037675 328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD------NFYCANDEKKSALTRLIERFGYKKLKWVVG 395 (418)
Q Consensus 328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~------~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~ 395 (418)
|+|++... ++.....++.++.|+|||||+++|. ++........+.....++.+||+.+.+...
T Consensus 143 D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 143 DVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred CEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 99986422 2222336789999999999999984 322222222233458889999999987553
No 39
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.33 E-value=2.2e-12 Score=124.08 Aligned_cols=97 Identities=18% Similarity=0.294 Sum_probs=81.1
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCC-ceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLF-PLYLSLDHRFPFYDNVFDLVHASSGLDVGG 340 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli-~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~ 340 (418)
.+|||||||.|.++..|+..|..|. ++|+++.+++.|+.+ |+. .......+++-...++||+|.|+.+++|..
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~Ga~Vt--giD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLGASVT--GIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CeEEEecCCccHhhHHHHHCCCeeE--EecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 4899999999999999999997774 589999999988744 331 122345666666568999999999999998
Q ss_pred ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 341 QPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+++ .++.+..+.+||||.++++..
T Consensus 139 dp~---~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 139 DPE---SFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred CHH---HHHHHHHHHcCCCcEEEEecc
Confidence 887 799999999999999999986
No 40
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.32 E-value=2.3e-11 Score=113.14 Aligned_cols=97 Identities=22% Similarity=0.334 Sum_probs=79.3
Q ss_pred CeEEEECCccChHHHHHhhcCc---EEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCCccceEEecCcCcC
Q 037675 266 RIGFDIGGGSGTFAARMAERNV---TVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDNVFDLVHASSGLDV 338 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV---~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~sFDlV~s~~~L~~ 338 (418)
.+|||+|||+|.++..+++... .+ +++|+++.+++.+.++. .+.+..++...+++++++||+|++...+++
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~--~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKV--TGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceE--EEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence 5899999999999999987742 44 35899999998887753 134556777788888889999999999988
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
..+.. .++.++.++|||||++++.+.
T Consensus 119 ~~~~~---~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 119 VTDIQ---KALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred cccHH---HHHHHHHHHcCCCcEEEEEEe
Confidence 76544 899999999999999988664
No 41
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.30 E-value=1.2e-11 Score=120.96 Aligned_cols=91 Identities=21% Similarity=0.356 Sum_probs=72.6
Q ss_pred CCeEEEECCccChHHHHHhhcC-----cEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEecCcCcC
Q 037675 265 IRIGFDIGGGSGTFAARMAERN-----VTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDV 338 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~g-----V~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~ 338 (418)
..+|||+|||+|.++..|++.. ..+ +++|+|+.|++.|.++.. +.+..++...+||++++||+|++...
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v--~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~--- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQL--FGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA--- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeE--EEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC---
Confidence 3579999999999999988652 233 458999999999987742 34566788899999999999998543
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+ ..+.|+.|+|||||+|++..+
T Consensus 161 ---~----~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 161 ---P----CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ---C----CCHHHHHhhccCCCEEEEEeC
Confidence 1 235699999999999988765
No 42
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.29 E-value=2.3e-11 Score=127.63 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=95.2
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC-C---Cceeeccc--CCCCCCCCccceEEecCcCcCC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG-L---FPLYLSLD--HRFPFYDNVFDLVHASSGLDVG 339 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG-l---i~~~~~~~--e~LPf~d~sFDlV~s~~~L~~~ 339 (418)
.+|||+|||+|.++..|++++..++ ++|+++.|++.+.+.. . +.++.++. +.+|+++++||+|++..+++++
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~~~v~--giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l 116 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKAGQVI--ALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYL 116 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhCCEEE--EEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhC
Confidence 4899999999999999998865554 5799999998776432 1 23444554 3578899999999999999988
Q ss_pred CChhHHHHHHHHhhccccCCcEEEEEecccCc---------hh---HHHHHHHHHHHcCcEEEEEE
Q 037675 340 GQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN---------DE---KKSALTRLIERFGYKKLKWV 393 (418)
Q Consensus 340 ~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~---------ee---~~~~~~~l~~~~Gfk~l~W~ 393 (418)
.+. .+..++.++.|+|||||++++.+..... +. ....|..++.+.||......
T Consensus 117 ~~~-~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 117 SDK-EVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred CHH-HHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCC
Confidence 653 4678999999999999999887642211 01 13578899999998876533
No 43
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.28 E-value=2.8e-11 Score=115.04 Aligned_cols=135 Identities=22% Similarity=0.307 Sum_probs=101.0
Q ss_pred HHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCC-ceee-cccCCCCCCCCccceEEec
Q 037675 256 DVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLF-PLYL-SLDHRFPFYDNVFDLVHAS 333 (418)
Q Consensus 256 ~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli-~~~~-~~~e~LPf~d~sFDlV~s~ 333 (418)
++++++.+..+-|||||||+|-.+..|.+.|...+ ++|+|+.|++.|.++.+- .++. +--+.+||.+++||.|++.
T Consensus 42 ELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wi--GvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 42 ELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWI--GVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISI 119 (270)
T ss_pred HHhhCCCCCCcEEEEeccCCCcchheeccCCceEE--eecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEe
Confidence 35667766667899999999999999999985443 589999999999987653 2333 4558999999999999998
Q ss_pred CcCcCC--------CChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcE---EEEEE
Q 037675 334 SGLDVG--------GQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYK---KLKWV 393 (418)
Q Consensus 334 ~~L~~~--------~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk---~l~W~ 393 (418)
.+++|. .+...+..++.-++.+|++|+..++ .++...++..+.+..-...+||. .+.|-
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~-QfYpen~~q~d~i~~~a~~aGF~GGlvVd~P 189 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL-QFYPENEAQIDMIMQQAMKAGFGGGLVVDWP 189 (270)
T ss_pred eeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE-EecccchHHHHHHHHHHHhhccCCceeeecc
Confidence 777642 2334566788889999999999866 45555555445566666777875 35553
No 44
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.28 E-value=5.1e-11 Score=110.67 Aligned_cols=120 Identities=19% Similarity=0.197 Sum_probs=89.2
Q ss_pred CeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCC-C-CCCCCccceEEecCcCcCCCCh
Q 037675 266 RIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHR-F-PFYDNVFDLVHASSGLDVGGQP 342 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~-L-Pf~d~sFDlV~s~~~L~~~~~~ 342 (418)
.+|||+|||+|.++..+++. +..+ .++|+++.+++.+.++++ .++.++.+. + ++++++||+|+++.+++|..++
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~--~giD~s~~~i~~a~~~~~-~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~ 91 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRG--YGIEIDQDGVLACVARGV-NVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP 91 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcE--EEEeCCHHHHHHHHHcCC-eEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH
Confidence 38999999999999999765 4444 357999999999988876 666665544 5 4788999999999999998765
Q ss_pred hHHHHHHHHhhccccCCcEEEEEecc--------------------------cCc----hhHHHHHHHHHHHcCcEEEEE
Q 037675 343 EKLEFLMFDFDRILRAGGLFWLDNFY--------------------------CAN----DEKKSALTRLIERFGYKKLKW 392 (418)
Q Consensus 343 ~~le~~L~Ei~RVLRPGG~~ii~~~~--------------------------~~~----ee~~~~~~~l~~~~Gfk~l~W 392 (418)
. .+|.|+.|+++++ +++-+. ... -...+.+.+++++.||+.++.
T Consensus 92 ~---~~l~e~~r~~~~~---ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~ 165 (194)
T TIGR02081 92 E---EILDEMLRVGRHA---IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDR 165 (194)
T ss_pred H---HHHHHHHHhCCeE---EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEE
Confidence 5 8899999988764 222110 000 012456889999999998875
Q ss_pred EE
Q 037675 393 VV 394 (418)
Q Consensus 393 ~~ 394 (418)
..
T Consensus 166 ~~ 167 (194)
T TIGR02081 166 AA 167 (194)
T ss_pred EE
Confidence 44
No 45
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.26 E-value=4.5e-11 Score=118.63 Aligned_cols=121 Identities=17% Similarity=0.259 Sum_probs=87.7
Q ss_pred CCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCccceEEecCc
Q 037675 265 IRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNVFDLVHASSG 335 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~sFDlV~s~~~ 335 (418)
.++|||||||+|.++..++++. ..++ ++|. +.+++.+++ .|+ +.++.++....++++ +|+|+.+++
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~--~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~ 224 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDST--ILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRI 224 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEE--EEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhh
Confidence 3599999999999999999874 4443 4676 667766543 454 234556665556654 699999999
Q ss_pred CcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc---hh---------------------HHHHHHHHHHHcCcEEEE
Q 037675 336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN---DE---------------------KKSALTRLIERFGYKKLK 391 (418)
Q Consensus 336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~---ee---------------------~~~~~~~l~~~~Gfk~l~ 391 (418)
+|+|.+. ....+|.++.|+|||||+++|.++.... .. ..++|..++++.||+.++
T Consensus 225 lh~~~~~-~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 225 LYSANEQ-LSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred hhcCChH-HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence 9988653 3457999999999999999988763221 00 025688899999998774
No 46
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.26 E-value=8.6e-11 Score=109.84 Aligned_cols=112 Identities=20% Similarity=0.215 Sum_probs=83.0
Q ss_pred CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCCCCCCccceEEecCcCc
Q 037675 266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LPf~d~sFDlV~s~~~L~ 337 (418)
.+|||+|||+|.++..++.. +..++ ++|.++.|++.|++ .++ +.+..++.+.++. +++||+|++...
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~~~V~--giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPELKVT--LVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCCCeEE--EEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 58999999999999888763 44553 57999998876654 344 3455677777777 789999998642
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~ 391 (418)
. .++.++.++.|+|||||++++....... ..+.++.+.+|+....
T Consensus 122 --~---~~~~~l~~~~~~LkpGG~lv~~~~~~~~----~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 122 --A---SLSDLVELCLPLLKPGGRFLALKGRDPE----EEIAELPKALGGKVEE 166 (187)
T ss_pred --c---CHHHHHHHHHHhcCCCeEEEEEeCCChH----HHHHHHHHhcCceEee
Confidence 2 2348999999999999999887654322 3366778888997554
No 47
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.24 E-value=4.2e-11 Score=118.98 Aligned_cols=126 Identities=25% Similarity=0.333 Sum_probs=93.7
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhH-HHHHHc---CC-Cce-ee-cccCCCCCCCCccceEEecCcCcC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYS-EFIAAR---GL-FPL-YL-SLDHRFPFYDNVFDLVHASSGLDV 338 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l-~~a~eR---Gl-i~~-~~-~~~e~LPf~d~sFDlV~s~~~L~~ 338 (418)
++|||||||.|.++.+|+.+|...| +++|.+.... ++..-+ |. ... .. -..|.+|. .++||+|+|+++|-|
T Consensus 117 k~VLDIGC~nGY~~frM~~~GA~~V-iGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYH 194 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRGAKSV-IGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYH 194 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcCCCEE-EEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhc
Confidence 5999999999999999999987544 4689886433 332211 21 122 22 37889998 889999999999999
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEEecccCchh--------------------HHHHHHHHHHHcCcEEEEEEEcc
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDE--------------------KKSALTRLIERFGYKKLKWVVGE 396 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee--------------------~~~~~~~l~~~~Gfk~l~W~~~~ 396 (418)
..+|- ..|.++...|||||.+++....-.+++ ....+...++++||+.++-.-..
T Consensus 195 rr~Pl---~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 195 RRSPL---DHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred cCCHH---HHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCc
Confidence 88876 899999999999999988765322210 12568899999999998754433
No 48
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.24 E-value=3.9e-11 Score=117.54 Aligned_cols=100 Identities=19% Similarity=0.113 Sum_probs=76.4
Q ss_pred CCeEEEECCccCh----HHHHHhhc-------CcEEEEeccCCCHHhHHHHHHcC-------------------------
Q 037675 265 IRIGFDIGGGSGT----FAARMAER-------NVTVITNTLNVDAPYSEFIAARG------------------------- 308 (418)
Q Consensus 265 ~r~VLDvGCGtG~----faa~La~~-------gV~vv~~alD~s~~~l~~a~eRG------------------------- 308 (418)
.-+|+|+|||||. +|..|++. ++.+ +++|+++.|++.|++.-
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I--~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKI--LATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEE--EEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 3589999999995 56666654 2444 46899999999887631
Q ss_pred --------CCceeecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 309 --------LFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 309 --------li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.+.+...+....|++++.||+|+|.++|+++.+ ...+.++.++.|+|||||++++.+.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-PTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-HHHHHHHHHHHHHhCCCeEEEEECc
Confidence 122334566677778899999999999999854 4456899999999999999988643
No 49
>PRK06202 hypothetical protein; Provisional
Probab=99.23 E-value=8.2e-11 Score=112.14 Aligned_cols=98 Identities=19% Similarity=0.237 Sum_probs=76.1
Q ss_pred CCeEEEECCccChHHHHHhh----cC--cEEEEeccCCCHHhHHHHHHcCC---CceeecccCCCCCCCCccceEEecCc
Q 037675 265 IRIGFDIGGGSGTFAARMAE----RN--VTVITNTLNVDAPYSEFIAARGL---FPLYLSLDHRFPFYDNVFDLVHASSG 335 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~----~g--V~vv~~alD~s~~~l~~a~eRGl---i~~~~~~~e~LPf~d~sFDlV~s~~~ 335 (418)
..+|||+|||+|.++..|++ .| +.+ +++|+++.|++.++++.. +.......+.+++++++||+|+++.+
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v--~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEV--TAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEE--EEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45899999999999888764 34 354 358999999999887632 24445566778888899999999999
Q ss_pred CcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+||..++ .+..++.|+.|++| |.+++.++
T Consensus 139 lhh~~d~-~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 139 LHHLDDA-EVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred eecCChH-HHHHHHHHHHHhcC--eeEEEecc
Confidence 9998764 35689999999999 45556554
No 50
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=4.9e-11 Score=117.79 Aligned_cols=136 Identities=24% Similarity=0.278 Sum_probs=97.6
Q ss_pred HHHHHccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHH----HcCCCceeecccCCCCCCCCccc
Q 037675 254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIA----ARGLFPLYLSLDHRFPFYDNVFD 328 (418)
Q Consensus 254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~----eRGli~~~~~~~e~LPf~d~sFD 328 (418)
+.+.+.|++|. +|||||||-|+++.+++++ ||+|+| +++|++|.+.+. ++|+..-+.-..+..+...+.||
T Consensus 64 ~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~G--vTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fD 139 (283)
T COG2230 64 ILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVG--VTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFD 139 (283)
T ss_pred HHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEE--eeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccc
Confidence 33445688884 9999999999999999998 899974 899999887654 46773122222344455556699
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-------hhH------------HHHHHHHHHHcCcEE
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-------DEK------------KSALTRLIERFGYKK 389 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-------ee~------------~~~~~~l~~~~Gfk~ 389 (418)
-|++..+|+|... +....++..++++|+|||.+++-...... ..+ ...+....+..||..
T Consensus 140 rIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v 218 (283)
T COG2230 140 RIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVV 218 (283)
T ss_pred eeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEE
Confidence 9999999999875 34669999999999999999776542211 000 134566677888887
Q ss_pred EEEEE
Q 037675 390 LKWVV 394 (418)
Q Consensus 390 l~W~~ 394 (418)
.+|..
T Consensus 219 ~~~~~ 223 (283)
T COG2230 219 LDVES 223 (283)
T ss_pred ehHhh
Confidence 76544
No 51
>PRK06922 hypothetical protein; Provisional
Probab=99.23 E-value=3.5e-11 Score=130.00 Aligned_cols=100 Identities=15% Similarity=0.188 Sum_probs=80.1
Q ss_pred CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCC--CCCCccceEEecCcC
Q 037675 266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFP--FYDNVFDLVHASSGL 336 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LP--f~d~sFDlV~s~~~L 336 (418)
.+|||+|||+|.++..+++. +..++ ++|+++.|++.++++ +. +.+..+++..+| |++++||+|+++.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVt--GIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIY--GIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 48999999999999888875 45554 589999999988764 22 233457777788 889999999999988
Q ss_pred cCCC----------ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 337 DVGG----------QPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 337 ~~~~----------~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
|++. ....+..+|.++.|+|||||.+++.+.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8652 134567999999999999999999875
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.22 E-value=2.6e-10 Score=104.56 Aligned_cols=119 Identities=13% Similarity=0.174 Sum_probs=85.4
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGG 340 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~ 340 (418)
.+|||+|||+|.++..+++++..++ ++|.++.+++.++++ +. +.+..++....+ +++||+|+++-.+++..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCIL--TTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEE--EEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCc
Confidence 4799999999999999999876553 589999999876653 32 223344444432 46999999987766443
Q ss_pred Ch------------------hHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675 341 QP------------------EKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 341 ~~------------------~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~ 391 (418)
+. ..++.++.++.|+|||||.+++......+. ..+...+++.||....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~---~~~~~~l~~~gf~~~~ 162 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGE---PDTFDKLDERGFRYEI 162 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCCh---HHHHHHHHhCCCeEEE
Confidence 21 125678999999999999998877644322 2367778888997653
No 53
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.22 E-value=1.1e-10 Score=113.15 Aligned_cols=126 Identities=22% Similarity=0.288 Sum_probs=86.9
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCCceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ 341 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~ 341 (418)
.+|||+|||+|.++..+++.|..-+ +++|+++.+++.++++ ++ . ....++..+.+||+|+++...
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v-~giDis~~~l~~A~~n~~~~~~-~----~~~~~~~~~~~fD~Vvani~~----- 189 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKV-LAVDIDPQAVEAARENAELNGV-E----LNVYLPQGDLKADVIVANILA----- 189 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeE-EEEECCHHHHHHHHHHHHHcCC-C----ceEEEccCCCCcCEEEEcCcH-----
Confidence 5899999999999998888775422 4689999999887664 32 1 011122223379999986432
Q ss_pred hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEEEcC
Q 037675 342 PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKP 414 (418)
Q Consensus 342 ~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qKP 414 (418)
..+..++.++.++|||||++++++..... .+.+...++..||+.++-.. .++ |...+++|+
T Consensus 190 -~~~~~l~~~~~~~LkpgG~lilsgi~~~~---~~~v~~~l~~~Gf~~~~~~~-------~~~-W~~~~~~~~ 250 (250)
T PRK00517 190 -NPLLELAPDLARLLKPGGRLILSGILEEQ---ADEVLEAYEEAGFTLDEVLE-------RGE-WVALVGKKK 250 (250)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEEECcHhh---HHHHHHHHHHCCCEEEEEEE-------eCC-EEEEEEEeC
Confidence 23457889999999999999998765432 23467778899998774211 123 555677765
No 54
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.22 E-value=1.6e-10 Score=109.46 Aligned_cols=139 Identities=18% Similarity=0.194 Sum_probs=88.8
Q ss_pred cCCCCCCeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC--------CCCCccc
Q 037675 260 LGSGGIRIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP--------FYDNVFD 328 (418)
Q Consensus 260 l~~g~~r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP--------f~d~sFD 328 (418)
+++| .+|||+|||+|.++..++++. ..+ +++|+++ |.. ..+ +.++++++...+ +.+++||
T Consensus 49 ~~~~--~~VLDlG~GtG~~t~~l~~~~~~~~~V--~aVDi~~-~~~---~~~-v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 49 FKPG--MTVVDLGAAPGGWSQYAVTQIGDKGRV--IACDILP-MDP---IVG-VDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCC--CEEEEEcccCCHHHHHHHHHcCCCceE--EEEeccc-ccC---CCC-cEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 3555 489999999999999998873 244 3578876 221 123 255666666643 6788999
Q ss_pred eEEecCcCcCCCChh--------HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCC
Q 037675 329 LVHASSGLDVGGQPE--------KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGET 400 (418)
Q Consensus 329 lV~s~~~L~~~~~~~--------~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~ 400 (418)
+|+|..+.++...+. ..+.+|.++.|+|||||.|++..+.. ++..+.+ ..++ -+|+.+.+....-...
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l-~~l~-~~f~~v~~~Kp~ssr~ 195 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYL-REIR-SLFTKVKVRKPDSSRA 195 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHH-HHHH-hCceEEEEECCccccc
Confidence 999987766544321 12468999999999999998876533 2222222 2222 2588887643222223
Q ss_pred CccceEEEEEE
Q 037675 401 GKSEVYLSAVL 411 (418)
Q Consensus 401 ~~~e~~l~Ai~ 411 (418)
...|.|+.+.-
T Consensus 196 ~s~e~~~~~~~ 206 (209)
T PRK11188 196 RSREVYIVATG 206 (209)
T ss_pred cCceeEEEeec
Confidence 45588887653
No 55
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.21 E-value=6.5e-11 Score=121.88 Aligned_cols=102 Identities=25% Similarity=0.352 Sum_probs=78.8
Q ss_pred HccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcC--C-CceeecccCCCCCCCCccceEEec
Q 037675 258 LALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARG--L-FPLYLSLDHRFPFYDNVFDLVHAS 333 (418)
Q Consensus 258 L~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRG--l-i~~~~~~~e~LPf~d~sFDlV~s~ 333 (418)
+.+++| .+|||||||+|.++.+++++ ++.++ ++|+|+.|++.++++. + +.+...+...+ +++||.|++.
T Consensus 163 l~l~~g--~rVLDIGcG~G~~a~~la~~~g~~V~--giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~ 235 (383)
T PRK11705 163 LQLKPG--MRVLDIGCGWGGLARYAAEHYGVSVV--GVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSV 235 (383)
T ss_pred hCCCCC--CEEEEeCCCccHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEe
Confidence 345555 48999999999999999986 77764 5899999999988763 2 12223344433 5789999999
Q ss_pred CcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.+++|... ...+.++.++.|+|||||++++...
T Consensus 236 ~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 236 GMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 99988754 3456899999999999999988764
No 56
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.21 E-value=4.6e-11 Score=112.31 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=83.9
Q ss_pred CCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC--Cceeeccc-CCCC--CCCCccceEEec
Q 037675 265 IRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLD-HRFP--FYDNVFDLVHAS 333 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~-e~LP--f~d~sFDlV~s~ 333 (418)
..+|||+|||+|.++..|++. +..+ +++|+++.+++.+.++ ++ +.++.+++ +.++ +++++||+|++.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v--~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINF--IGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccE--EEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 458999999999999999876 3344 3579999999877652 33 24455676 7777 788999999987
Q ss_pred CcCcCCCCh-----hHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEE
Q 037675 334 SGLDVGGQP-----EKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKK 389 (418)
Q Consensus 334 ~~L~~~~~~-----~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~ 389 (418)
....+.... ...+.++.++.|+|||||+|++... .....+.+.+.++..|++.
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~---~~~~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD---WEGYAEYMLEVLSAEGGFL 176 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC---CHHHHHHHHHHHHhCcccc
Confidence 654332111 0134789999999999999988643 2233334566667777643
No 57
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.21 E-value=4e-11 Score=112.22 Aligned_cols=130 Identities=19% Similarity=0.256 Sum_probs=98.9
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeeccc-CCCC-CCCCccce
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLD-HRFP-FYDNVFDL 329 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~-e~LP-f~d~sFDl 329 (418)
.|.+. +++|. +|||+|||.|.+.++|.+ +++.+. ++|++++.+..+.+||+ ++++++. +.|+ |+|++||.
T Consensus 6 ~I~~~--I~pgs--rVLDLGCGdG~LL~~L~~~k~v~g~--GvEid~~~v~~cv~rGv-~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 6 IIAEW--IEPGS--RVLDLGCGDGELLAYLKDEKQVDGY--GVEIDPDNVAACVARGV-SVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred HHHHH--cCCCC--EEEecCCCchHHHHHHHHhcCCeEE--EEecCHHHHHHHHHcCC-CEEECCHHHhHhhCCCCCccE
Confidence 34444 45564 899999999999999998 578876 48999999999999999 7887643 4564 89999999
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec---ccC--------c-----h----------h----HHHHHH
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF---YCA--------N-----D----------E----KKSALT 379 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~---~~~--------~-----e----------e----~~~~~~ 379 (418)
|+.+.+++....+. .+|.||.|| |...+++-+ +|. + + . .-+.++
T Consensus 79 VIlsqtLQ~~~~P~---~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe 152 (193)
T PF07021_consen 79 VILSQTLQAVRRPD---EVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFE 152 (193)
T ss_pred EehHhHHHhHhHHH---HHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHH
Confidence 99999999987665 899999777 445666544 111 0 0 0 125689
Q ss_pred HHHHHcCcEEEEEEEc
Q 037675 380 RLIERFGYKKLKWVVG 395 (418)
Q Consensus 380 ~l~~~~Gfk~l~W~~~ 395 (418)
++.++.|++.++....
T Consensus 153 ~lc~~~~i~I~~~~~~ 168 (193)
T PF07021_consen 153 DLCRELGIRIEERVFL 168 (193)
T ss_pred HHHHHCCCEEEEEEEE
Confidence 9999999998875543
No 58
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.20 E-value=3.9e-11 Score=113.18 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=74.7
Q ss_pred eEEEECCccChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHc-----CC--CceeecccCCCC-CCCCccceEEecCcCc
Q 037675 267 IGFDIGGGSGTFAARMAE-RNVTVITNTLNVDAPYSEFIAAR-----GL--FPLYLSLDHRFP-FYDNVFDLVHASSGLD 337 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~-~gV~vv~~alD~s~~~l~~a~eR-----Gl--i~~~~~~~e~LP-f~d~sFDlV~s~~~L~ 337 (418)
.||+||||||..-.+.-- .++.+. .+|+++.|-+++.++ .+ ..++++..|++| .+|++||.|++..+|.
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt--~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVT--CLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEE--EeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 689999999987666553 355543 379999999876442 11 124568899999 8999999999999998
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
...++. +.|.|+.|+|||||.+++-.
T Consensus 157 Sve~~~---k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 157 SVEDPV---KQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred ccCCHH---HHHHHHHHhcCCCcEEEEEe
Confidence 876665 89999999999999986654
No 59
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.20 E-value=7e-11 Score=107.16 Aligned_cols=98 Identities=21% Similarity=0.194 Sum_probs=77.8
Q ss_pred ccCCCHHhHHHHHHcC---------CCceeecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEE
Q 037675 293 TLNVDAPYSEFIAARG---------LFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFW 363 (418)
Q Consensus 293 alD~s~~~l~~a~eRG---------li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~i 363 (418)
++|+|++|++.|++|- -+.+..++++++|+++++||+|++..+++++.++. .+|.|+.|+|||||.++
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~---~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL---RAMKEMYRVLKPGSRVS 78 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH---HHHHHHHHHcCcCeEEE
Confidence 5799999999986541 13566789999999999999999999999987655 89999999999999998
Q ss_pred EEecccCc--------------------------hh------------HHHHHHHHHHHcCcEEEEEE
Q 037675 364 LDNFYCAN--------------------------DE------------KKSALTRLIERFGYKKLKWV 393 (418)
Q Consensus 364 i~~~~~~~--------------------------ee------------~~~~~~~l~~~~Gfk~l~W~ 393 (418)
+.++.... +. ..+++..++++.||+.+++.
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 88753210 00 12567889999999988654
No 60
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.19 E-value=3.4e-11 Score=115.14 Aligned_cols=135 Identities=20% Similarity=0.285 Sum_probs=103.0
Q ss_pred HHHHHHc-cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCcee-ecccCCC-C-CCCCccc
Q 037675 253 LIDDVLA-LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLY-LSLDHRF-P-FYDNVFD 328 (418)
Q Consensus 253 ~I~~lL~-l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~-~~~~e~L-P-f~d~sFD 328 (418)
.+.++|. ...|..+++||+|||||-++..|..+--.. .++|+|++|++.|.++|+.... ++....+ + ..++.||
T Consensus 113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~l--tGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRL--TGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred HHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhc--cCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence 5667765 456779999999999999999998874333 2479999999999999985443 3433322 2 4577899
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc-------Cchh-----HHHHHHHHHHHcCcEEEEE
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC-------ANDE-----KKSALTRLIERFGYKKLKW 392 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~-------~~ee-----~~~~~~~l~~~~Gfk~l~W 392 (418)
+|.+..+|.... +++.++.-+.+.|+|||.|.++.... .++. .+.+...+++..||..+.-
T Consensus 191 Li~AaDVl~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 191 LIVAADVLPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred chhhhhHHHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEe
Confidence 999999999885 45689999999999999999986521 1121 2356788999999998863
No 61
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.19 E-value=1.3e-11 Score=101.86 Aligned_cols=89 Identities=25% Similarity=0.331 Sum_probs=52.6
Q ss_pred EEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CCCc--eeecc-cCCCCC-CCCccceEEecCcCcC
Q 037675 269 FDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GLFP--LYLSL-DHRFPF-YDNVFDLVHASSGLDV 338 (418)
Q Consensus 269 LDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gli~--~~~~~-~e~LPf-~d~sFDlV~s~~~L~~ 338 (418)
||+|||+|.++..+.++ +..++ ++|+|+.|++.+++| +... ..... .+.... ..++||+|++..++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~--~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYT--GVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEE--EEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999999888 44443 589999999655443 2211 11111 121222 2369999999999999
Q ss_pred CCChhHHHHHHHHhhccccCCcEE
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLF 362 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ 362 (418)
+. +++.++..+.++|||||.|
T Consensus 79 l~---~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 LE---DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S----HHHHHHHHTTT-TSS-EE
T ss_pred hh---hHHHHHHHHHHHcCCCCCC
Confidence 94 3459999999999999975
No 62
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.18 E-value=1.1e-10 Score=109.77 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=73.6
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHH----HHHHcCC-CceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSE----FIAARGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGG 340 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~----~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~ 340 (418)
.++||+|||.|..+.+|+++|..|. ++|.++..++ .|.++++ +.....+.+...++ +.||+|++..++++..
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~~Vt--AvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~ 108 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGFDVT--AVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQ 108 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT-EEE--EEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-
T ss_pred CcEEEcCCCCcHHHHHHHHCCCeEE--EEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCC
Confidence 3899999999999999999998874 5799986664 4555676 22334566666664 6899999998888875
Q ss_pred ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 341 QPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
++.+..++..|...+||||++++..+
T Consensus 109 -~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 109 -RELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -HHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 45678899999999999999988655
No 63
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.18 E-value=2.3e-10 Score=106.20 Aligned_cols=115 Identities=22% Similarity=0.292 Sum_probs=76.7
Q ss_pred CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCCCCCCccceEEecCcCc
Q 037675 266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LPf~d~sFDlV~s~~~L~ 337 (418)
.+|||+|||+|.++..++..+ ..+ +++|.++.|++.+++ .|+ +.++.++.+.++ .+++||+|++.. ++
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~~~V--~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPELKL--TLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCCCeE--EEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 589999999999998887653 344 357999988866543 354 344557777764 467999999865 32
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~ 391 (418)
.++.++.++.|+|||||.+++........+..+ ..+-....|++.++
T Consensus 120 ------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~-~~e~~~~~~~~~~~ 166 (181)
T TIGR00138 120 ------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEE-AKRKCQVLGVEPLE 166 (181)
T ss_pred ------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHH-HHHhhhhcCceEee
Confidence 233788899999999999987643222222211 22333346777663
No 64
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.18 E-value=3e-10 Score=107.19 Aligned_cols=122 Identities=14% Similarity=0.168 Sum_probs=90.6
Q ss_pred CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC-------CCceeecccCCCCCCCCccceEEecCcCc
Q 037675 265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG-------LFPLYLSLDHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG-------li~~~~~~~e~LPf~d~sFDlV~s~~~L~ 337 (418)
..+|||+|||+|.++..+++.+..++ ++|+++.|++.|+++. -+.+..++.+.++ ++||+|++..+++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~v~--gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAIVK--AVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCEEE--EEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHH
Confidence 46899999999999999999877664 5899999998887652 1234455666655 8899999999888
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEeccc------------Cch--------hHHHHHHHHHHHcCcEEEEE
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC------------AND--------EKKSALTRLIERFGYKKLKW 392 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~------------~~e--------e~~~~~~~l~~~~Gfk~l~W 392 (418)
++.. .++..++.++.|++++|+++.+..... ... ...+++..+++.+||+.+.-
T Consensus 131 ~~~~-~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 131 HYPA-SDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVRE 204 (219)
T ss_pred hCCH-HHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeee
Confidence 7743 457789999999999887765543210 000 02356888999999988753
No 65
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.17 E-value=5.3e-10 Score=103.18 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=81.7
Q ss_pred ccCCCCCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccceE
Q 037675 259 ALGSGGIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDLV 330 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDlV 330 (418)
.+.++ .+|||+|||+|.++..+++++ ..++ ++|+++.+++.++++ ++ +.+..++.. .++ ++.||+|
T Consensus 28 ~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~v~--~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v 101 (187)
T PRK08287 28 ELHRA--KHLIDVGAGTGSVSIEAALQFPSLQVT--AIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAI 101 (187)
T ss_pred CCCCC--CEEEEECCcCCHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEE
Confidence 44444 589999999999999998763 3443 579999988876542 33 223334432 233 4689999
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~ 391 (418)
++...... +..++.++.++|||||++++..... +..+++..++++.||+.+.
T Consensus 102 ~~~~~~~~------~~~~l~~~~~~Lk~gG~lv~~~~~~---~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 102 FIGGSGGN------LTAIIDWSLAHLHPGGRLVLTFILL---ENLHSALAHLEKCGVSELD 153 (187)
T ss_pred EECCCccC------HHHHHHHHHHhcCCCeEEEEEEecH---hhHHHHHHHHHHCCCCcce
Confidence 99765432 3478899999999999998865422 2223467789999997655
No 66
>PRK14968 putative methyltransferase; Provisional
Probab=99.15 E-value=2.1e-09 Score=97.80 Aligned_cols=119 Identities=18% Similarity=0.274 Sum_probs=83.1
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC----CceeecccCCCCCCCCccceEEecCcCc
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL----FPLYLSLDHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl----i~~~~~~~e~LPf~d~sFDlV~s~~~L~ 337 (418)
.+|||+|||+|.++..+++++..++ ++|.++.+++.++++ +. +.+...+... ++.+++||+|+++.-+.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~~v~--~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGKKVV--GVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL 101 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcceEE--EEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence 4899999999999999998876654 479999998877442 32 2334443322 34566899999875443
Q ss_pred CCC------------------ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675 338 VGG------------------QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL 390 (418)
Q Consensus 338 ~~~------------------~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l 390 (418)
+.. ....+..++.++.++|||||.+++........ +.+..+++++||+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~---~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGE---DEVLEYLEKLGFEAE 169 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCH---HHHHHHHHHCCCeee
Confidence 211 12335678999999999999987765533222 346778899999765
No 67
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.13 E-value=7.6e-10 Score=105.39 Aligned_cols=99 Identities=17% Similarity=0.041 Sum_probs=77.2
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHH-HHcCC-----------------CceeecccCCCCCC-CCc
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFI-AARGL-----------------FPLYLSLDHRFPFY-DNV 326 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a-~eRGl-----------------i~~~~~~~e~LPf~-d~s 326 (418)
.+|||+|||.|..+.+|+++|..|+ ++|+|+..++.+ .+.|+ +.++.++...++.. ...
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~--gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVL--GVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEE--EEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 4899999999999999999998875 589999888864 33433 23345666666542 357
Q ss_pred cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
||.|+...++++.. +...+.++..|.+.|||||++++..+
T Consensus 114 fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 114 VDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred cCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 99999998888774 55667899999999999998766554
No 68
>PTZ00146 fibrillarin; Provisional
Probab=99.12 E-value=1.3e-09 Score=108.38 Aligned_cols=147 Identities=12% Similarity=0.186 Sum_probs=91.2
Q ss_pred ccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHH----hHHHHHHcCCCceeecccCC---CCCCCCccceE
Q 037675 259 ALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAP----YSEFIAARGLFPLYLSLDHR---FPFYDNVFDLV 330 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~----~l~~a~eRGli~~~~~~~e~---LPf~d~sFDlV 330 (418)
.+.+| .+|||+|||+|.++.++++. +-....+++|+++. +++.+.+|.-+..++.++.. ++.+..+||+|
T Consensus 129 ~IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 129 PIKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred ccCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEE
Confidence 35666 48999999999999999987 21111145799875 55666655322344444321 22345689999
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC---c---hh-HHHHHHHHHHHcCcEEEEEEEcccCCCCcc
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA---N---DE-KKSALTRLIERFGYKKLKWVVGEKGETGKS 403 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~---~---ee-~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~ 403 (418)
++... + ++....++.++.|+|||||+|+|.-.... . ++ ..++. +.++..||+.+.-...+. -.++
T Consensus 207 ~~Dva-~----pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev-~~L~~~GF~~~e~v~L~P--y~~~ 278 (293)
T PTZ00146 207 FADVA-Q----PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEV-QKLKKEGLKPKEQLTLEP--FERD 278 (293)
T ss_pred EEeCC-C----cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHH-HHHHHcCCceEEEEecCC--ccCC
Confidence 99764 2 22334677899999999999988422111 1 12 22223 678888999876333221 1356
Q ss_pred ceEEEEEEEcCC
Q 037675 404 EVYLSAVLQKPV 415 (418)
Q Consensus 404 e~~l~Ai~qKP~ 415 (418)
+..+.++++.+.
T Consensus 279 h~~v~~~~~~~~ 290 (293)
T PTZ00146 279 HAVVIGVYRPVK 290 (293)
T ss_pred cEEEEEEEcCCc
Confidence 777777776543
No 69
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.12 E-value=9.4e-10 Score=104.41 Aligned_cols=121 Identities=18% Similarity=0.277 Sum_probs=89.7
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCC-CCCCccceEEecCcCcCC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFP-FYDNVFDLVHASSGLDVG 339 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LP-f~d~sFDlV~s~~~L~~~ 339 (418)
.+|||+|||+|.++..+++.+..++ ++|+++.+++.+.++ +. +.+...+...++ ..++.||+|++..++++.
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~~v~--~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGADVT--GIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCCeEE--EEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 4899999999999999998876654 479999988877654 33 123334444443 356899999999999988
Q ss_pred CChhHHHHHHHHhhccccCCcEEEEEecccCc---------------------h-----hHHHHHHHHHHHcCcEEEE
Q 037675 340 GQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN---------------------D-----EKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 340 ~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~---------------------e-----e~~~~~~~l~~~~Gfk~l~ 391 (418)
.++. .+|.++.++|+|||++++..+.... . -..+.+..+++..||+.+.
T Consensus 128 ~~~~---~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~ 202 (233)
T PRK05134 128 PDPA---SFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQD 202 (233)
T ss_pred CCHH---HHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEee
Confidence 7654 7899999999999999887542100 0 0124588899999999764
No 70
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.11 E-value=6.2e-10 Score=104.63 Aligned_cols=122 Identities=18% Similarity=0.254 Sum_probs=90.5
Q ss_pred CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCC-CCccceEEecCcCc
Q 037675 265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFY-DNVFDLVHASSGLD 337 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~-d~sFDlV~s~~~L~ 337 (418)
..+|||+|||+|.++..+++.+..++ ++|.++.+++.+.++ +. +.+..++.+.++.. +++||+|++..+++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~--~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVT--GIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEE--EEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 35899999999999999988876654 579999998877653 32 23344566666554 47999999999999
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEecccCc--------------------hh------HHHHHHHHHHHcCcEEEE
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--------------------DE------KKSALTRLIERFGYKKLK 391 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--------------------ee------~~~~~~~l~~~~Gfk~l~ 391 (418)
+..++. .++.++.++|+|||++++....... .. ....+.++++..||+.+.
T Consensus 124 ~~~~~~---~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~ 200 (224)
T TIGR01983 124 HVPDPQ---AFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKD 200 (224)
T ss_pred hCCCHH---HHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeee
Confidence 887655 8999999999999999887542110 00 124578889999998764
No 71
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.08 E-value=2.7e-10 Score=109.65 Aligned_cols=95 Identities=25% Similarity=0.345 Sum_probs=70.7
Q ss_pred ccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCC-----ceeecccCCCCC--CCCccceEE
Q 037675 259 ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLF-----PLYLSLDHRFPF--YDNVFDLVH 331 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli-----~~~~~~~e~LPf--~d~sFDlV~ 331 (418)
....+. +.++|+|||+|.-+..+++..-.|+ +.|+++.|+++|.+.-.+ +.-....+-.++ .++|.|||.
T Consensus 29 ~~~~~h-~~a~DvG~G~Gqa~~~iae~~k~VI--atD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~ 105 (261)
T KOG3010|consen 29 SRTEGH-RLAWDVGTGNGQAARGIAEHYKEVI--ATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLIT 105 (261)
T ss_pred hhCCCc-ceEEEeccCCCcchHHHHHhhhhhe--eecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeeh
Confidence 345554 5899999999966677777754443 469999999998875431 222223333444 499999999
Q ss_pred ecCcCcCCCChhHHHHHHHHhhccccCCc
Q 037675 332 ASSGLDVGGQPEKLEFLMFDFDRILRAGG 360 (418)
Q Consensus 332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG 360 (418)
|..|+||. +++.++.+++||||+.|
T Consensus 106 ~Aqa~HWF----dle~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 106 AAQAVHWF----DLERFYKEAYRVLRKDG 130 (261)
T ss_pred hhhhHHhh----chHHHHHHHHHHcCCCC
Confidence 99999987 46699999999999987
No 72
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.08 E-value=1.2e-09 Score=104.04 Aligned_cols=135 Identities=21% Similarity=0.279 Sum_probs=88.5
Q ss_pred cHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCC
Q 037675 250 NDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFP 321 (418)
Q Consensus 250 y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LP 321 (418)
+..++..++..-.....+|||+|||+|.++..+++. +..++ ++|+++.+++.+++ .++ +.+..++... +
T Consensus 73 ~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~--~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~ 149 (251)
T TIGR03534 73 TEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVT--AVDISPEALAVARKNAARLGLDNVTFLQSDWFE-P 149 (251)
T ss_pred hHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-c
Confidence 344455444432222348999999999999999986 34443 57999999987654 344 2344455544 4
Q ss_pred CCCCccceEEecCcCcC------CCC-----------------hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHH
Q 037675 322 FYDNVFDLVHASSGLDV------GGQ-----------------PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSAL 378 (418)
Q Consensus 322 f~d~sFDlV~s~~~L~~------~~~-----------------~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~ 378 (418)
+++++||+|+++--+.. +.. ......++.++.++|||||.+++...+.. .+.+
T Consensus 150 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~----~~~~ 225 (251)
T TIGR03534 150 LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQ----GEAV 225 (251)
T ss_pred CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccH----HHHH
Confidence 66789999998532221 110 01124678999999999999988654322 2347
Q ss_pred HHHHHHcCcEEEE
Q 037675 379 TRLIERFGYKKLK 391 (418)
Q Consensus 379 ~~l~~~~Gfk~l~ 391 (418)
.+++++.||+.+.
T Consensus 226 ~~~l~~~gf~~v~ 238 (251)
T TIGR03534 226 RALFEAAGFADVE 238 (251)
T ss_pred HHHHHhCCCCceE
Confidence 7778889998764
No 73
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.07 E-value=8.3e-10 Score=93.24 Aligned_cols=92 Identities=22% Similarity=0.194 Sum_probs=66.8
Q ss_pred CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH----cCCC--ceeecccCC-CCCCCCccceEEecCcC
Q 037675 266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA----RGLF--PLYLSLDHR-FPFYDNVFDLVHASSGL 336 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e----RGli--~~~~~~~e~-LPf~d~sFDlV~s~~~L 336 (418)
.+|||+|||+|.++..++++ +..+ +++|.++.+++.+++ .++. .+..++... ++...++||.|++....
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v--~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRV--YAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceE--EEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 48999999999999999986 2344 357999998887654 2332 223344333 34445789999997654
Q ss_pred cCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 337 DVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
.. .+.++.++.|+|||||+|++.
T Consensus 99 ~~------~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 99 GL------LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hh------HHHHHHHHHHHcCCCCEEEEE
Confidence 32 348899999999999999875
No 74
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.07 E-value=2.4e-09 Score=108.90 Aligned_cols=135 Identities=18% Similarity=0.206 Sum_probs=89.0
Q ss_pred CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHH----cCCCc-eeecccCCCCCCCCccceEEecCcCcC
Q 037675 266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAA----RGLFP-LYLSLDHRFPFYDNVFDLVHASSGLDV 338 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~e----RGli~-~~~~~~e~LPf~d~sFDlV~s~~~L~~ 338 (418)
.+|||+|||+|.++..+++++ ..+ .++|+++.+++.+++ .++.. +..++. +...++.||+|+++-.||.
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v--~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~--~~~~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRL--TLSDVSAAALESSRATLAANGLEGEVFASNV--FSDIKGRFDMIISNPPFHD 273 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEE--EEEECCHHHHHHHHHHHHHcCCCCEEEEccc--ccccCCCccEEEECCCccC
Confidence 379999999999999999874 344 358999999987654 34421 222333 2234678999999988875
Q ss_pred CC--ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEEEcCCC
Q 037675 339 GG--QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPVR 416 (418)
Q Consensus 339 ~~--~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qKP~~ 416 (418)
.. .....+.++.++.|.|||||.++|....... |..++++. |..... ..++ ...+++.|+-+|+.+
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~------y~~~l~~~-Fg~~~~--la~~---~~f~v~~a~~~~~~~ 341 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLP------YPDLLDET-FGSHEV--LAQT---GRFKVYRAIMTRQAK 341 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCC------hHHHHHHH-cCCeEE--EEeC---CCEEEEEEEccCcCC
Confidence 32 2345679999999999999999887653221 22233322 444433 2222 346777888777653
No 75
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.07 E-value=5.9e-10 Score=103.99 Aligned_cols=120 Identities=14% Similarity=0.242 Sum_probs=78.1
Q ss_pred CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCC---CCCCccceEEecC
Q 037675 266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFP---FYDNVFDLVHASS 334 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LP---f~d~sFDlV~s~~ 334 (418)
.+|||+|||+|.++..|+++. ..+ +++|+++.+++.|.+ .++ +.++.+++..++ +++++||.|++..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v--~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNF--LGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCE--EEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 489999999999999999873 334 357999999877654 343 234456665543 5567999999875
Q ss_pred cCcCCCCh-----hHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcC-cEEE
Q 037675 335 GLDVGGQP-----EKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFG-YKKL 390 (418)
Q Consensus 335 ~L~~~~~~-----~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~G-fk~l 390 (418)
...+.... -..+.++.++.|+|||||.|++.... +...+.+.+.+...+ |..+
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~---~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN---EPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC---HHHHHHHHHHHHhCCCeEec
Confidence 43332211 01136899999999999999775432 222223344444444 6654
No 76
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.06 E-value=2.1e-10 Score=111.55 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=75.9
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC-CCceee-----------cccCCCCCCCCccceEEec
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG-LFPLYL-----------SLDHRFPFYDNVFDLVHAS 333 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG-li~~~~-----------~~~e~LPf~d~sFDlV~s~ 333 (418)
++|||+|||+|-++..|+..|..|. ++|+++.|++.|++.- .-|... .+.|.+ .+.||.|+|+
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~--GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVT--GIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS 165 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeE--eecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence 6799999999999999999998875 5899999999998752 112211 223332 2349999999
Q ss_pred CcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.+++|..+++ .++.-+-+.|||||.++|++.
T Consensus 166 evleHV~dp~---~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 166 EVLEHVKDPQ---EFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHHHhCHH---HHHHHHHHHhCCCCceEeeeh
Confidence 9999998777 889999999999999999885
No 77
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.06 E-value=2e-09 Score=101.41 Aligned_cols=123 Identities=17% Similarity=0.200 Sum_probs=86.8
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCcCcC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSGLDV 338 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~~ 338 (418)
.+|||+|||+|.++..|++.+..+ .++|+++.|++.|+++ +. +.+..++ ++..+++||+|++..+++|
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~~v--~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGAKV--VASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCCEE--EEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhhc
Confidence 589999999999999999988664 3589999999988764 22 2233333 5666789999999999988
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEEecc------------cC-c-h------hHHHHHHHHHHHcCcEEEEEEE
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFY------------CA-N-D------EKKSALTRLIERFGYKKLKWVV 394 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~------------~~-~-e------e~~~~~~~l~~~~Gfk~l~W~~ 394 (418)
+.++ .+..++.++.+.+++++.+.+.... .. . . -..+.+..+++..||+......
T Consensus 140 ~~~~-~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 140 YPQE-DAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred CCHH-HHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 7543 4678999999988665554332110 00 0 0 0134588889999998776433
No 78
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.6e-09 Score=107.99 Aligned_cols=119 Identities=19% Similarity=0.240 Sum_probs=84.2
Q ss_pred CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCCc-eeecccCCCCCCC-CccceEEecCcCcC
Q 037675 265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLFP-LYLSLDHRFPFYD-NVFDLVHASSGLDV 338 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli~-~~~~~~e~LPf~d-~sFDlV~s~~~L~~ 338 (418)
.++|||+|||+|-++.+.++.|..-+ .++|+++..++.+++ .++.. ........+..+. +.||+|+|+-.-+
T Consensus 163 g~~vlDvGcGSGILaIAa~kLGA~~v-~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~- 240 (300)
T COG2264 163 GKTVLDVGCGSGILAIAAAKLGAKKV-VGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAE- 240 (300)
T ss_pred CCEEEEecCChhHHHHHHHHcCCceE-EEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHH-
Confidence 36999999999999999999996633 357888888876655 34422 1122223333444 5999999975322
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEE
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWV 393 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~ 393 (418)
-+..+..++.+.|||||++++++..... .+...+.++..||+.+...
T Consensus 241 -----vl~~La~~~~~~lkpgg~lIlSGIl~~q---~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 241 -----VLVELAPDIKRLLKPGGRLILSGILEDQ---AESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred -----HHHHHHHHHHHHcCCCceEEEEeehHhH---HHHHHHHHHhCCCeEeEEE
Confidence 2347888999999999999999875433 2346677788899887643
No 79
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.04 E-value=1.8e-09 Score=104.08 Aligned_cols=160 Identities=16% Similarity=0.267 Sum_probs=112.3
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhhcC----cEEEEeccCCCHHhHHHHHHcCC------Cceeecc---cCC
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERN----VTVITNTLNVDAPYSEFIAARGL------FPLYLSL---DHR 319 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~g----V~vv~~alD~s~~~l~~a~eRGl------i~~~~~~---~e~ 319 (418)
-.+++++.......+||+||||.|....-+.+-+ ..+ .+.|.++..++..+++-- ...+.+. .-.
T Consensus 60 Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v--~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~ 137 (264)
T KOG2361|consen 60 EFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKV--YACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLK 137 (264)
T ss_pred hhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEE--EEcCCChHHHHHHHhccccchhhhcccceeccchhcc
Confidence 3455655554444489999999998887776652 444 468999999988776531 1233331 113
Q ss_pred CCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc--------------------h------h
Q 037675 320 FPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--------------------D------E 373 (418)
Q Consensus 320 LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--------------------e------e 373 (418)
-|...+++|+|.+..+|.-.+ ++.+..++.++.|+|||||.+++.|+.... + -
T Consensus 138 ~~~~~~svD~it~IFvLSAi~-pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF 216 (264)
T KOG2361|consen 138 EPPEEGSVDIITLIFVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFF 216 (264)
T ss_pred CCCCcCccceEEEEEEEeccC-hHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeec
Confidence 367789999999999998765 456789999999999999999999872211 0 0
Q ss_pred HHHHHHHHHHHcCcEEEEEEEcccC------CCCccceEEEEEEEcCC
Q 037675 374 KKSALTRLIERFGYKKLKWVVGEKG------ETGKSEVYLSAVLQKPV 415 (418)
Q Consensus 374 ~~~~~~~l~~~~Gfk~l~W~~~~k~------d~~~~e~~l~Ai~qKP~ 415 (418)
..+++..++..+||..+.-.+..+. ......+|+.++++||.
T Consensus 217 ~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~~ 264 (264)
T KOG2361|consen 217 TEEELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKPL 264 (264)
T ss_pred cHHHHHHHHHhcccchhcccceeeeeeehhccCccceEEEEEEeecCC
Confidence 2367889999999987654433221 12345789999999984
No 80
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.04 E-value=2.1e-09 Score=99.35 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=65.1
Q ss_pred cCCCCCCeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC--------CCCCccc
Q 037675 260 LGSGGIRIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP--------FYDNVFD 328 (418)
Q Consensus 260 l~~g~~r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP--------f~d~sFD 328 (418)
+.+| .+|||+|||+|.++..++++. ..++ ++|+++.+ ...++ .+..++..+.+ +++++||
T Consensus 30 i~~g--~~VLDiG~GtG~~~~~l~~~~~~~~~v~--~vDis~~~----~~~~i-~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 30 IKPG--DTVLDLGAAPGGWSQVAVEQVGGKGRVI--AVDLQPMK----PIENV-DFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred cCCC--CEEEEecCCCCHHHHHHHHHhCCCceEE--EEeccccc----cCCCc-eEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 3455 489999999999998887762 2343 46888754 11233 44444444332 4677899
Q ss_pred eEEecCcCc---CCC-----ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 329 LVHASSGLD---VGG-----QPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 329 lV~s~~~L~---~~~-----~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+|++..+.+ .|. ..+..+.++.++.++|||||++++..+
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 999865422 111 112246899999999999999988653
No 81
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.03 E-value=3.4e-09 Score=104.95 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=77.9
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCCceeec-ccCCCCCCCCccceEEecCcCcCCC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLFPLYLS-LDHRFPFYDNVFDLVHASSGLDVGG 340 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~-~~e~LPf~d~sFDlV~s~~~L~~~~ 340 (418)
.+|||+|||+|.++..+++.|..-+ .++|+++.+++.++++ ++...... .....++.++.||+|+++...
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V-~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~---- 235 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKV-VGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA---- 235 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeE-EEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH----
Confidence 5899999999999999888875322 3589999999887664 33111111 111234557899999997543
Q ss_pred ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675 341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL 390 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l 390 (418)
..+..++.++.|+|||||++++++.... ..+.+.+.++.. |+.+
T Consensus 236 --~~l~~ll~~~~~~LkpgG~li~sgi~~~---~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 236 --EVIKELYPQFSRLVKPGGWLILSGILET---QAQSVCDAYEQG-FTVV 279 (288)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEeCcHh---HHHHHHHHHHcc-Ccee
Confidence 2345789999999999999999887432 223355555554 6555
No 82
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.03 E-value=2.2e-09 Score=101.76 Aligned_cols=140 Identities=14% Similarity=0.180 Sum_probs=80.8
Q ss_pred cHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccce
Q 037675 250 NDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDL 329 (418)
Q Consensus 250 y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDl 329 (418)
.+.+|..+...+. .-.|-|+|||.+.+|..+. .+++|.+ .|..+. +- .+...++..+|.+++++|+
T Consensus 60 vd~iI~~l~~~~~--~~viaD~GCGdA~la~~~~-~~~~V~S--fDLva~--------n~-~Vtacdia~vPL~~~svDv 125 (219)
T PF05148_consen 60 VDVIIEWLKKRPK--SLVIADFGCGDAKLAKAVP-NKHKVHS--FDLVAP--------NP-RVTACDIANVPLEDESVDV 125 (219)
T ss_dssp HHHHHHHHCTS-T--TS-EEEES-TT-HHHHH---S---EEE--EESS-S--------ST-TEEES-TTS-S--TT-EEE
T ss_pred HHHHHHHHHhcCC--CEEEEECCCchHHHHHhcc-cCceEEE--eeccCC--------CC-CEEEecCccCcCCCCceeE
Confidence 4445555433332 2489999999999997764 4566655 455321 11 2444678899999999999
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEE
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSA 409 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~A 409 (418)
|++...|... +...++.|..|||||||.++|.+....-+.. +.+...++.+||+...-+. .+..++..
T Consensus 126 ~VfcLSLMGT----n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~-~~F~~~~~~~GF~~~~~d~-------~n~~F~~f 193 (219)
T PF05148_consen 126 AVFCLSLMGT----NWPDFIREANRVLKPGGILKIAEVKSRFENV-KQFIKALKKLGFKLKSKDE-------SNKHFVLF 193 (219)
T ss_dssp EEEES---SS-----HHHHHHHHHHHEEEEEEEEEEEEGGG-S-H-HHHHHHHHCTTEEEEEEE---------STTEEEE
T ss_pred EEEEhhhhCC----CcHHHHHHHHheeccCcEEEEEEecccCcCH-HHHHHHHHHCCCeEEeccc-------CCCeEEEE
Confidence 9987666543 3448999999999999999998875443333 4588889999998774322 12345555
Q ss_pred EEEcCC
Q 037675 410 VLQKPV 415 (418)
Q Consensus 410 i~qKP~ 415 (418)
.++|..
T Consensus 194 ~F~K~~ 199 (219)
T PF05148_consen 194 EFKKIR 199 (219)
T ss_dssp EEEE-S
T ss_pred EEEEcC
Confidence 666653
No 83
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.02 E-value=1.2e-09 Score=103.81 Aligned_cols=108 Identities=16% Similarity=0.066 Sum_probs=85.5
Q ss_pred cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEecCcCcC
Q 037675 260 LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDV 338 (418)
Q Consensus 260 l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~ 338 (418)
+..-..++|.|+|||+|..+..|+++-...+..++|.|++|++.|+.|.. ..+..++...+- ++..+|+++++.+|+|
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAvlqW 104 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAVLQW 104 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhhhhh
Confidence 33345679999999999999999999322222469999999999999876 233446666663 6788999999999999
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEEecccCc
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN 371 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ 371 (418)
..+.. .+|..+.--|.|||.+.+-.+-+..
T Consensus 105 lpdH~---~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 105 LPDHP---ELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred ccccH---HHHHHHHHhhCCCceEEEECCCccC
Confidence 87766 8899999999999999888775443
No 84
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.01 E-value=1.9e-09 Score=102.97 Aligned_cols=96 Identities=19% Similarity=0.034 Sum_probs=75.0
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHH-HHcCCC-----------------ceeecccCCCCCC-CCc
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFI-AARGLF-----------------PLYLSLDHRFPFY-DNV 326 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a-~eRGli-----------------~~~~~~~e~LPf~-d~s 326 (418)
.+|||+|||.|..+..|+++|..|+ ++|+++..++.+ .++++. .++.++...++.. ...
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~--avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVL--GVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEE--EEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 4899999999999999999998886 589999888754 455552 2234555555433 258
Q ss_pred cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEE
Q 037675 327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWL 364 (418)
Q Consensus 327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii 364 (418)
||+|+-..++++.. ++..+.++..+.++|||||++++
T Consensus 117 fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 117 VDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence 99999999888874 55678999999999999997544
No 85
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.01 E-value=9.1e-09 Score=107.29 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=99.0
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCC--CC
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFP--FY 323 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LP--f~ 323 (418)
.+...+...+| .+|||+|||+|..+..++++. ..+ +++|.++.+++.++++ |+ +.+..+++..++ +.
T Consensus 235 ~~~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~v--~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~ 310 (427)
T PRK10901 235 LAATLLAPQNG--ERVLDACAAPGGKTAHILELAPQAQV--VALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWD 310 (427)
T ss_pred HHHHHcCCCCC--CEEEEeCCCCChHHHHHHHHcCCCEE--EEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcc
Confidence 34445555555 489999999999999998873 344 3589999998776543 43 233445665554 34
Q ss_pred CCccceEEecC------cCc------CCCChhH-------HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHH
Q 037675 324 DNVFDLVHASS------GLD------VGGQPEK-------LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIER 384 (418)
Q Consensus 324 d~sFDlV~s~~------~L~------~~~~~~~-------le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~ 384 (418)
+++||.|++.- ++. +...+.+ .+.+|.++.++|||||+++++......++..+.+...+++
T Consensus 311 ~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 311 GQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred cCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 67899999532 111 1112222 2468999999999999999887655555555566666665
Q ss_pred c-CcEEEEE--------EEcccCCCCccceEEEEEEEc
Q 037675 385 F-GYKKLKW--------VVGEKGETGKSEVYLSAVLQK 413 (418)
Q Consensus 385 ~-Gfk~l~W--------~~~~k~d~~~~e~~l~Ai~qK 413 (418)
. +|+.+.. .+.+. ....+.++.|.++|
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~P~--~~~~dGff~a~l~k 426 (427)
T PRK10901 391 HPDAELLDTGTPQQPGRQLLPG--EEDGDGFFYALLIK 426 (427)
T ss_pred CCCCEEecCCCCCCCceEECCC--CCCCCCeEEEEEEE
Confidence 4 4554431 11111 12357789998887
No 86
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.99 E-value=1.2e-08 Score=95.36 Aligned_cols=123 Identities=20% Similarity=0.284 Sum_probs=80.3
Q ss_pred ccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCC-CCCCCCcc
Q 037675 259 ALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHR-FPFYDNVF 327 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~-LPf~d~sF 327 (418)
.+.++ .+|||+|||+|.++..++.. +..++ ++|.++.+++.++++ |+ +.+..++... ++..++.|
T Consensus 37 ~~~~~--~~vlDlG~GtG~~s~~~a~~~~~~~~v~--avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 37 RLRKG--DMILDIGCGTGSVTVEASLLVGETGKVY--AVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCCc--CEEEEeCCcCCHHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 34444 48999999999999887653 23443 579999999876543 42 2333444443 34445789
Q ss_pred ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcE--EEEEEE
Q 037675 328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYK--KLKWVV 394 (418)
Q Consensus 328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk--~l~W~~ 394 (418)
|.|++.... ..+..++.++.++|||||++++.... .+........+++.||. .+.|.+
T Consensus 113 D~V~~~~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~---~~~~~~~~~~l~~~g~~~~~~~~~~ 172 (198)
T PRK00377 113 DRIFIGGGS------EKLKEIISASWEIIKKGGRIVIDAIL---LETVNNALSALENIGFNLEITEVII 172 (198)
T ss_pred CEEEECCCc------ccHHHHHHHHHHHcCCCcEEEEEeec---HHHHHHHHHHHHHcCCCeEEEEEeh
Confidence 999985421 23458899999999999999774331 12223466667888873 344554
No 87
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.98 E-value=6.1e-09 Score=104.86 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=86.4
Q ss_pred ccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCC--ceeecccCCCCCCCCccceEEe
Q 037675 259 ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLF--PLYLSLDHRFPFYDNVFDLVHA 332 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli--~~~~~~~e~LPf~d~sFDlV~s 332 (418)
.+++| .+|||.|||+|+++..++..+..++ ++|+++.|++.++.+ |+. .+..+++.++|+++++||+|++
T Consensus 179 ~~~~g--~~vLDp~cGtG~~lieaa~~~~~v~--g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~ 254 (329)
T TIGR01177 179 RVTEG--DRVLDPFCGTGGFLIEAGLMGAKVI--GCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIAT 254 (329)
T ss_pred CCCCc--CEEEECCCCCCHHHHHHHHhCCeEE--EEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEE
Confidence 34555 4899999999999888777777765 479999998765542 442 3456788899998999999999
Q ss_pred cCcCc-----CCC-ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675 333 SSGLD-----VGG-QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL 390 (418)
Q Consensus 333 ~~~L~-----~~~-~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l 390 (418)
.--+. ... ..+....++.++.|+|||||++++..+.. .+ +..+++..|| .+
T Consensus 255 dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~----~~~~~~~~g~-i~ 311 (329)
T TIGR01177 255 DPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--ID----LESLAEDAFR-VV 311 (329)
T ss_pred CCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CC----HHHHHhhcCc-ch
Confidence 62111 111 11234689999999999999997765532 12 4566888888 54
No 88
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.98 E-value=2.8e-09 Score=100.39 Aligned_cols=97 Identities=22% Similarity=0.227 Sum_probs=69.2
Q ss_pred HHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCc
Q 037675 257 VLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNV 326 (418)
Q Consensus 257 lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~s 326 (418)
.+.+.++ .+|||+|||+|..++.|++. +-.++ ++|.++.+++.+++ .|+ +.+..++........++
T Consensus 67 ~l~~~~~--~~VLDiG~GsG~~~~~la~~~~~~g~V~--~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (205)
T PRK13944 67 LIEPRPG--MKILEVGTGSGYQAAVCAEAIERRGKVY--TVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP 142 (205)
T ss_pred hcCCCCC--CEEEEECcCccHHHHHHHHhcCCCCEEE--EEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC
Confidence 3344444 48999999999999888875 23443 57999999887664 243 24455665554445679
Q ss_pred cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
||+|++..++.+. ..++.|+|||||++++..
T Consensus 143 fD~Ii~~~~~~~~---------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 143 FDAIIVTAAASTI---------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccEEEEccCcchh---------hHHHHHhcCcCcEEEEEE
Confidence 9999998876543 237889999999997753
No 89
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.97 E-value=5.8e-09 Score=104.12 Aligned_cols=115 Identities=21% Similarity=0.277 Sum_probs=76.4
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHH----HcCCCceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIA----ARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ 341 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~----eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~ 341 (418)
.+|||+|||+|-++...++.|..-+ .++|+++..++.|+ ..|+-..+. ...........||+|+++-...
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v-~a~DiDp~Av~~a~~N~~~N~~~~~~~-v~~~~~~~~~~~dlvvANI~~~---- 236 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKV-VAIDIDPLAVEAARENAELNGVEDRIE-VSLSEDLVEGKFDLVVANILAD---- 236 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEE-EEEESSCHHHHHHHHHHHHTT-TTCEE-ESCTSCTCCS-EEEEEEES-HH----
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeE-EEecCCHHHHHHHHHHHHHcCCCeeEE-EEEecccccccCCEEEECCCHH----
Confidence 4999999999999999998886432 35677776665554 456533221 1112234459999999975433
Q ss_pred hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEE
Q 037675 342 PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKW 392 (418)
Q Consensus 342 ~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W 392 (418)
-+..++.++.+.|||||++++++....+.+ .+.+.++. ||+.+..
T Consensus 237 --vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~---~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 237 --VLLELAPDIASLLKPGGYLILSGILEEQED---EVIEAYKQ-GFELVEE 281 (295)
T ss_dssp --HHHHHHHHCHHHEEEEEEEEEEEEEGGGHH---HHHHHHHT-TEEEEEE
T ss_pred --HHHHHHHHHHHhhCCCCEEEEccccHHHHH---HHHHHHHC-CCEEEEE
Confidence 234778899999999999999988654332 34555666 9987754
No 90
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.94 E-value=1e-08 Score=103.15 Aligned_cols=120 Identities=16% Similarity=0.092 Sum_probs=81.6
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-----------CceeecccCCCCCCCCccceEEecC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-----------FPLYLSLDHRFPFYDNVFDLVHASS 334 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-----------i~~~~~~~e~LPf~d~sFDlV~s~~ 334 (418)
.+|||+|||+|.++..|+++|..++ ++|+++.|++.++++.. +.+...+. +..+++||+|+|..
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~~V~--gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl---~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGAIVS--ASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL---ESLSGKYDTVTCLD 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCCEEE--EEECCHHHHHHHHHHHHhcccccccccceEEEEcch---hhcCCCcCEEEEcC
Confidence 4899999999999999999987664 58999999998877621 11122233 33368999999999
Q ss_pred cCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc-------------Cch--------hHHHHHHHHHHHcCcEEEEE
Q 037675 335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC-------------AND--------EKKSALTRLIERFGYKKLKW 392 (418)
Q Consensus 335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~-------------~~e--------e~~~~~~~l~~~~Gfk~l~W 392 (418)
+++|+.+. ....++..+.+ +.+||.++...+.. .+. ...+++.++++..||+...-
T Consensus 221 vL~H~p~~-~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~ 297 (315)
T PLN02585 221 VLIHYPQD-KADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARR 297 (315)
T ss_pred EEEecCHH-HHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEE
Confidence 99887543 34456666665 45666544322210 000 02467899999999997643
No 91
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.92 E-value=2.4e-08 Score=96.78 Aligned_cols=137 Identities=19% Similarity=0.232 Sum_probs=87.8
Q ss_pred CcHHHHHHHHc-cCCCCCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc---CC---CceeecccCC
Q 037675 249 KNDFLIDDVLA-LGSGGIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR---GL---FPLYLSLDHR 319 (418)
Q Consensus 249 ~y~~~I~~lL~-l~~g~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR---Gl---i~~~~~~~e~ 319 (418)
.++.+++.++. +......+|||+|||+|.++..++... ..+ +++|+++.+++.++++ +. +.++.++...
T Consensus 92 ~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v--~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~ 169 (275)
T PRK09328 92 ETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEV--TAVDISPEALAVARRNAKHGLGARVEFLQGDWFE 169 (275)
T ss_pred CcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEE--EEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC
Confidence 44555555542 222223589999999999999998874 444 3579999999887764 21 2333443322
Q ss_pred CCCCCCccceEEecCcCcC------C-----------------CChhHHHHHHHHhhccccCCcEEEEEecccCchhHHH
Q 037675 320 FPFYDNVFDLVHASSGLDV------G-----------------GQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKS 376 (418)
Q Consensus 320 LPf~d~sFDlV~s~~~L~~------~-----------------~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~ 376 (418)
++++++||+|+++--... . ......+.++.++.++|||||++++...+. ..+
T Consensus 170 -~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~----~~~ 244 (275)
T PRK09328 170 -PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD----QGE 244 (275)
T ss_pred -cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch----HHH
Confidence 334689999998521110 0 011234578889999999999998854332 223
Q ss_pred HHHHHHHHcCcEEEEE
Q 037675 377 ALTRLIERFGYKKLKW 392 (418)
Q Consensus 377 ~~~~l~~~~Gfk~l~W 392 (418)
.+..+++..||+.+.+
T Consensus 245 ~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 245 AVRALLAAAGFADVET 260 (275)
T ss_pred HHHHHHHhCCCceeEE
Confidence 4777888899987755
No 92
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.91 E-value=6.6e-09 Score=98.47 Aligned_cols=96 Identities=21% Similarity=0.170 Sum_probs=69.7
Q ss_pred HHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCcc
Q 037675 257 VLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVF 327 (418)
Q Consensus 257 lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sF 327 (418)
.+.+.+| .+|||||||+|.+++.|++. + ..++ ++|+++.+++.++++ |+ +.+..++....+..++.|
T Consensus 71 ~l~~~~g--~~VLdIG~GsG~~t~~la~~~~~~~~V~--~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~f 146 (212)
T PRK13942 71 LLDLKEG--MKVLEIGTGSGYHAAVVAEIVGKSGKVV--TIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPY 146 (212)
T ss_pred HcCCCCc--CEEEEECCcccHHHHHHHHhcCCCCEEE--EEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCc
Confidence 3455655 48999999999999888876 2 3443 479999999877663 33 344556666555567899
Q ss_pred ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
|+|++...+... ..++.+.|||||.+++.
T Consensus 147 D~I~~~~~~~~~---------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 147 DRIYVTAAGPDI---------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CEEEECCCcccc---------hHHHHHhhCCCcEEEEE
Confidence 999998765432 23667789999998774
No 93
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=2.3e-08 Score=104.52 Aligned_cols=154 Identities=17% Similarity=0.222 Sum_probs=101.7
Q ss_pred HHHHHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCC---
Q 037675 254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFP--- 321 (418)
Q Consensus 254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LP--- 321 (418)
+...+...+| .+|||+|||+|+.+..+++. + ..+ +++|+++.+++.+++ .|+ +.+..++...++
T Consensus 244 ~~~~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v--~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 244 VAPLLDPQPG--EVILDACAAPGGKTTHIAELMGDQGEI--WAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK 319 (434)
T ss_pred HHHHhCCCCc--CEEEEeCCCCchhHHHHHHHhCCCceE--EEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc
Confidence 3344555555 48999999999999988875 2 234 357999998876654 354 233445666665
Q ss_pred -CCCCccceEEec------CcCcCCCC------hhH-------HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHH
Q 037675 322 -FYDNVFDLVHAS------SGLDVGGQ------PEK-------LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRL 381 (418)
Q Consensus 322 -f~d~sFDlV~s~------~~L~~~~~------~~~-------le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l 381 (418)
+.+++||.|++. +++....+ +.+ ...+|.++.++|||||+++.++.....+|..+.+..+
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~ 399 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQF 399 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHH
Confidence 557899999963 23332111 111 2478999999999999998887666666666677777
Q ss_pred HHHc-CcEEEEEEEccc-CCC--CccceEEEEEEEcC
Q 037675 382 IERF-GYKKLKWVVGEK-GET--GKSEVYLSAVLQKP 414 (418)
Q Consensus 382 ~~~~-Gfk~l~W~~~~k-~d~--~~~e~~l~Ai~qKP 414 (418)
+++. +|+.... .. .-+ ...+.++.|.++|.
T Consensus 400 l~~~~~~~~~~~---~~~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 400 LARHPDWKLEPP---KQKIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred HHhCCCcEecCC---CCccCCCCCCCCcEEEEEEEeC
Confidence 7765 4553211 01 111 24588999999985
No 94
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.89 E-value=7.6e-09 Score=97.84 Aligned_cols=98 Identities=21% Similarity=0.192 Sum_probs=68.9
Q ss_pred HHHHccCCCCCCeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCC
Q 037675 255 DDVLALGSGGIRIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDN 325 (418)
Q Consensus 255 ~~lL~l~~g~~r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~ 325 (418)
.+.+.+.++ .+|||+|||+|.+++.|++.. ..++ ++|.++.+++.|+++ |+ +.+..++........+
T Consensus 70 ~~~l~~~~~--~~VLDiG~GsG~~a~~la~~~~~~g~V~--~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 70 TELLELKPG--MKVLEIGTGSGYQAAVLAEIVGRDGLVV--SIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHhCCCCc--CEEEEECCCccHHHHHHHHHhCCCCEEE--EEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 334456655 489999999999999998862 2243 579999999877653 43 2344555554433457
Q ss_pred ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
.||+|++...... +..++.+.|||||++++.
T Consensus 146 ~fD~Ii~~~~~~~---------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPK---------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCCccc---------ccHHHHHhcCcCcEEEEE
Confidence 8999998765433 334678899999999774
No 95
>PRK14967 putative methyltransferase; Provisional
Probab=98.89 E-value=5.4e-08 Score=92.52 Aligned_cols=117 Identities=17% Similarity=0.126 Sum_probs=75.8
Q ss_pred CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCC-CceeecccCCCCCCCCccceEEecCcCcCC
Q 037675 266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVG 339 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~ 339 (418)
.+|||+|||+|.++..+++.+. .+ +++|+++.+++.+++ .++ +.++.++... .+++++||+|+++--+..-
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v--~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSV--TAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeE--EEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 4899999999999999988764 44 357999998886655 243 2233344433 3467899999997322211
Q ss_pred C------------------ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcE
Q 037675 340 G------------------QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYK 388 (418)
Q Consensus 340 ~------------------~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk 388 (418)
. ....++.++.++.++|||||.+++....... . ..+..+++..||.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~--~-~~~~~~l~~~g~~ 178 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG--V-ERTLTRLSEAGLD 178 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC--H-HHHHHHHHHCCCC
Confidence 0 0112567889999999999999875432211 1 1244445556664
No 96
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.88 E-value=9.9e-09 Score=105.66 Aligned_cols=112 Identities=12% Similarity=0.097 Sum_probs=76.0
Q ss_pred CcHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----CC-----Cceeeccc
Q 037675 249 KNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----GL-----FPLYLSLD 317 (418)
Q Consensus 249 ~y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----Gl-----i~~~~~~~ 317 (418)
++.++++. ++... ..+|||+|||+|.++..+++++ ..++ ++|.++.+++.+++. +. +.++.+++
T Consensus 216 GtrllL~~-lp~~~--~~~VLDLGCGtGvi~i~la~~~P~~~V~--~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~ 290 (378)
T PRK15001 216 GARFFMQH-LPENL--EGEIVDLGCGNGVIGLTLLDKNPQAKVV--FVDESPMAVASSRLNVETNMPEALDRCEFMINNA 290 (378)
T ss_pred HHHHHHHh-CCccc--CCeEEEEeccccHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHHHHcCcccCceEEEEEccc
Confidence 34555553 23222 2489999999999999999874 4443 579999999887653 21 12333333
Q ss_pred CCCCCCCCccceEEecCcCcCC--CChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 318 HRFPFYDNVFDLVHASSGLDVG--GQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 318 e~LPf~d~sFDlV~s~~~L~~~--~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
.. .+++.+||+|+|+--+|.. ........++.++.|+|||||.+++..
T Consensus 291 l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 291 LS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 22 1345689999998666532 222345688999999999999998875
No 97
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.88 E-value=1.2e-08 Score=80.75 Aligned_cols=95 Identities=22% Similarity=0.322 Sum_probs=69.2
Q ss_pred eEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHH---cCC---CceeecccCCCCC-CCCccceEEecCcCcC
Q 037675 267 IGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAA---RGL---FPLYLSLDHRFPF-YDNVFDLVHASSGLDV 338 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~e---RGl---i~~~~~~~e~LPf-~d~sFDlV~s~~~L~~ 338 (418)
+++|+|||+|.++..+++. +..+. ++|.++.+++.+.+ .+. +.++..+....+. ..+.||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVT--GVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEE--EEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999999873 44443 47998888776651 111 2334444444443 5678999999998887
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
+ ......++..+.+.|||||++++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 234568999999999999999775
No 98
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.87 E-value=4.8e-08 Score=101.81 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=97.7
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHHHHc----CCC-ce--eecccCCCCC-
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFIAAR----GLF-PL--YLSLDHRFPF- 322 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a~eR----Gli-~~--~~~~~e~LPf- 322 (418)
.+...+...+| .+|||+|||+|+.+..+++. + ..+ +++|+++.+++.++++ |+- .+ ..++....++
T Consensus 229 ~~~~~L~~~~g--~~VLDlcag~G~kt~~la~~~~~~~v--~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 229 WVATWLAPQNE--ETILDACAAPGGKTTHILELAPQAQV--VALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW 304 (426)
T ss_pred HHHHHhCCCCC--CeEEEeCCCccHHHHHHHHHcCCCeE--EEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 34445555555 48999999999999998875 3 344 3579999988766543 542 11 1234433443
Q ss_pred -CCCccceEEec------CcCcCCC------ChhH-------HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHH
Q 037675 323 -YDNVFDLVHAS------SGLDVGG------QPEK-------LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLI 382 (418)
Q Consensus 323 -~d~sFDlV~s~------~~L~~~~------~~~~-------le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~ 382 (418)
.+++||.|++. ++++... .+.+ -..+|.++.|+|||||+++++......+|.++.+..++
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l 384 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFL 384 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHH
Confidence 56789999952 3443221 1111 24789999999999999999877665556556666777
Q ss_pred HHc-CcEEEEEEEc-c--cC-----CC--CccceEEEEEEEc
Q 037675 383 ERF-GYKKLKWVVG-E--KG-----ET--GKSEVYLSAVLQK 413 (418)
Q Consensus 383 ~~~-Gfk~l~W~~~-~--k~-----d~--~~~e~~l~Ai~qK 413 (418)
++. +|. +.|.-. . .. -+ ...+.++.|.++|
T Consensus 385 ~~~~~~~-~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k 425 (426)
T TIGR00563 385 QEHPDFP-FEKTGTPEQVRDGGLQILPHAEEGDGFFYAKLIK 425 (426)
T ss_pred HhCCCCe-eccCCCccccCCCcEEECCCCCCCCCeEEEEEEe
Confidence 665 343 222100 0 00 01 2457889999887
No 99
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.87 E-value=3.2e-08 Score=102.88 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=96.7
Q ss_pred cCCcHHHHHHHHc-cCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC-CceeecccC
Q 037675 247 RGKNDFLIDDVLA-LGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDH 318 (418)
Q Consensus 247 ~~~y~~~I~~lL~-l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e 318 (418)
...++.+++.++. +.++ .+|||+|||+|.++..++.. +..+ +++|+|+.+++.++++ +. +.+..++..
T Consensus 235 RpeTE~LVe~aL~~l~~~--~rVLDLGcGSG~IaiaLA~~~p~a~V--tAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~ 310 (423)
T PRK14966 235 RPETEHLVEAVLARLPEN--GRVWDLGTGSGAVAVTVALERPDAFV--RASDISPPALETARKNAADLGARVEFAHGSWF 310 (423)
T ss_pred CccHHHHHHHhhhccCCC--CEEEEEeChhhHHHHHHHHhCCCCEE--EEEECCHHHHHHHHHHHHHcCCcEEEEEcchh
Confidence 3445666666654 3333 48999999999999988865 3444 3579999999877653 32 344455543
Q ss_pred CCCCC-CCccceEEecCcCcCC----------------------CChhHHHHHHHHhhccccCCcEEEEEecccCchhHH
Q 037675 319 RFPFY-DNVFDLVHASSGLDVG----------------------GQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKK 375 (418)
Q Consensus 319 ~LPf~-d~sFDlV~s~~~L~~~----------------------~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~ 375 (418)
...++ .++||+|+|+-=.... ......+.++.++.+.|+|||.+++...+.+.+
T Consensus 311 e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e--- 387 (423)
T PRK14966 311 DTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGA--- 387 (423)
T ss_pred ccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHH---
Confidence 33332 4589999995311100 011124477788889999999988765543333
Q ss_pred HHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEEEc
Q 037675 376 SALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQK 413 (418)
Q Consensus 376 ~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qK 413 (418)
.+.++++..||+.+.- ..|-...+.++.+.+.|
T Consensus 388 -~V~~ll~~~Gf~~v~v----~kDl~G~dR~v~~~~~~ 420 (423)
T PRK14966 388 -AVRGVLAENGFSGVET----LPDLAGLDRVTLGKYMK 420 (423)
T ss_pred -HHHHHHHHCCCcEEEE----EEcCCCCcEEEEEEEhh
Confidence 3677788889976643 22322345566655555
No 100
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.86 E-value=8.9e-09 Score=106.14 Aligned_cols=98 Identities=19% Similarity=0.170 Sum_probs=70.5
Q ss_pred CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHH----HcCCC--ceeecccCCC--CCCCCccceEEecCc
Q 037675 266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIA----ARGLF--PLYLSLDHRF--PFYDNVFDLVHASSG 335 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~----eRGli--~~~~~~~e~L--Pf~d~sFDlV~s~~~ 335 (418)
..+||||||+|.++..++.+. ..++ ++|+++.+++.+. ++|+. .++.+++..+ +++++++|.|++...
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~i--GIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFI--GIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEE--EEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 489999999999999999874 4443 5899988876553 44553 3345666544 578999999998654
Q ss_pred CcCCCChh----HHHHHHHHhhccccCCcEEEEEe
Q 037675 336 LDVGGQPE----KLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 336 L~~~~~~~----~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
. +|.... -.+.++.++.|+|||||.+.+..
T Consensus 202 d-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 V-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred C-CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 332211 12478999999999999997753
No 101
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.85 E-value=5.9e-08 Score=95.84 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=79.9
Q ss_pred CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecC--
Q 037675 266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASS-- 334 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~-- 334 (418)
.+|||+|||+|.++..++... ..+ +++|+++.+++.|+++ ++ +.++.++... +++++.||+|+++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v--~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEV--IAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEE--EEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCC
Confidence 489999999999999999863 444 3589999999877653 33 2344444322 34455899999951
Q ss_pred -----------cCcCCC---------ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHH-HcCcEEEE
Q 037675 335 -----------GLDVGG---------QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIE-RFGYKKLK 391 (418)
Q Consensus 335 -----------~L~~~~---------~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~-~~Gfk~l~ 391 (418)
++.+.. .....+.++.++.+.|+|||++++...+.+.+. +.+++. ..||..+.
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~----~~~~~~~~~~~~~~~ 266 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKS----LKELLRIKFTWYDVE 266 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHH----HHHHHHhcCCCceeE
Confidence 111111 012456889999999999999988766554443 455555 46787664
No 102
>PLN03075 nicotianamine synthase; Provisional
Probab=98.83 E-value=2.9e-08 Score=99.08 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=69.6
Q ss_pred CCCeEEEECCccChHHHH-Hh-hc--CcEEEEeccCCCHHhHHHHHH-----cCC---CceeecccCCCCCCCCccceEE
Q 037675 264 GIRIGFDIGGGSGTFAAR-MA-ER--NVTVITNTLNVDAPYSEFIAA-----RGL---FPLYLSLDHRFPFYDNVFDLVH 331 (418)
Q Consensus 264 ~~r~VLDvGCGtG~faa~-La-~~--gV~vv~~alD~s~~~l~~a~e-----RGl---i~~~~~~~e~LPf~d~sFDlV~ 331 (418)
..++|+|||||.|.+++. ++ .. +..++ ++|.++.+++.|++ .|+ +.+..+++..++-..+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~--giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFH--NFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEE--EEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence 346899999998855433 33 23 23343 47999998887654 233 3444555555433357899999
Q ss_pred ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+. ++++|... ..+.++..+.|.|||||++++...
T Consensus 201 ~~-ALi~~dk~-~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 201 LA-ALVGMDKE-EKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred Ee-cccccccc-cHHHHHHHHHHhcCCCcEEEEecc
Confidence 99 88888422 234999999999999999988763
No 103
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.82 E-value=1.6e-07 Score=92.02 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=82.4
Q ss_pred HHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCCC--ceeecccCCCCCCCCc
Q 037675 256 DVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGLF--PLYLSLDHRFPFYDNV 326 (418)
Q Consensus 256 ~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGli--~~~~~~~e~LPf~d~s 326 (418)
.++...+| .+|||+|||+|+.+..+++. .-.+ +++|+++.+++.+++ .|+. .+...+...++...+.
T Consensus 65 ~~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v--~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 140 (264)
T TIGR00446 65 LALEPDPP--ERVLDMAAAPGGKTTQISALMKNEGAI--VANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPK 140 (264)
T ss_pred HHhCCCCc--CEEEEECCCchHHHHHHHHHcCCCCEE--EEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccC
Confidence 34455555 48999999999999888774 1233 357999998876544 3542 3344566666666677
Q ss_pred cceEEec------CcCcCCC------ChhH-------HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHc
Q 037675 327 FDLVHAS------SGLDVGG------QPEK-------LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERF 385 (418)
Q Consensus 327 FDlV~s~------~~L~~~~------~~~~-------le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~ 385 (418)
||.|++. +++..-. .+.. ...+|.++.+.|||||+++.+......+|.++.+..+++..
T Consensus 141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKR 218 (264)
T ss_pred CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhC
Confidence 9999963 2222110 1111 23589999999999999988765544555555566666653
No 104
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.82 E-value=4.8e-08 Score=96.76 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=78.3
Q ss_pred CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecC--
Q 037675 266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASS-- 334 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~-- 334 (418)
.+|||+|||+|.++..++++ +..++ ++|+++.+++.|+++ |+ +.++.++... ++++++||+|+++=
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~--avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVD--AVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 58999999999999999986 34553 589999999877653 54 2344454422 23566899999851
Q ss_pred ----cC-------cCCC---------ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675 335 ----GL-------DVGG---------QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL 390 (418)
Q Consensus 335 ----~L-------~~~~---------~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l 390 (418)
.+ ++.. .....+.++.++.++|||||++++...... + .+..++...||.-+
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~----~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-E----ALEEAYPDVPFTWL 270 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-H----HHHHHHHhCCCcee
Confidence 11 1100 011235789999999999999987655422 2 36666777777543
No 105
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.81 E-value=1.3e-07 Score=99.05 Aligned_cols=159 Identities=14% Similarity=0.201 Sum_probs=98.6
Q ss_pred HHHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCC-
Q 037675 252 FLIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFP- 321 (418)
Q Consensus 252 ~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LP- 321 (418)
..+...+.+.+| .+|||+|||+|..+..+++. +..+ +++|+++.+++.+++ .|+ +.+..++...++
T Consensus 240 ~lv~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v--~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~ 315 (444)
T PRK14902 240 MLVAPALDPKGG--DTVLDACAAPGGKTTHIAELLKNTGKV--VALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE 315 (444)
T ss_pred HHHHHHhCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEE--EEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc
Confidence 345555556555 48999999999999998875 2334 357999998876654 354 234455655543
Q ss_pred CCCCccceEEecC------cCcC------CCChhHH-------HHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHH
Q 037675 322 FYDNVFDLVHASS------GLDV------GGQPEKL-------EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLI 382 (418)
Q Consensus 322 f~d~sFDlV~s~~------~L~~------~~~~~~l-------e~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~ 382 (418)
...++||+|++.- .+.+ ...+.++ ..+|.++.++|||||.++.+......++.......++
T Consensus 316 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l 395 (444)
T PRK14902 316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFL 395 (444)
T ss_pred hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHH
Confidence 1237899999742 1111 1111222 3579999999999999987765444445455566667
Q ss_pred HHc-CcEEEEEEEc----------c---cCCC--CccceEEEEEEEcC
Q 037675 383 ERF-GYKKLKWVVG----------E---KGET--GKSEVYLSAVLQKP 414 (418)
Q Consensus 383 ~~~-Gfk~l~W~~~----------~---k~d~--~~~e~~l~Ai~qKP 414 (418)
++. .|+.+..... . +..+ ...+.++.|+++|.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~a~l~k~ 443 (444)
T PRK14902 396 EEHPEFELVPLQHEKPDELVYEVKDGYLQILPNDYGTDGFFIAKLRKK 443 (444)
T ss_pred HhCCCcEEecccccccccccccccCCeEEECCCCCCCCCeEEEEEEEC
Confidence 765 3665542110 0 0012 24588999999884
No 106
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=1.5e-07 Score=98.64 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=97.7
Q ss_pred HHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCCCCCC
Q 037675 255 DDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFPFYDN 325 (418)
Q Consensus 255 ~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LPf~d~ 325 (418)
..++...+| .+|||+|||+|+.+..+++. +-.+ +++|+++.+++.+++ .|+ +.+..+++..++ +++
T Consensus 243 ~~~l~~~~g--~~VLDlgaG~G~kt~~la~~~~~~~~V--~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~ 317 (445)
T PRK14904 243 CLLLNPQPG--STVLDLCAAPGGKSTFMAELMQNRGQI--TAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEE 317 (445)
T ss_pred HHhcCCCCC--CEEEEECCCCCHHHHHHHHHhCCCcEE--EEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCC
Confidence 334445555 48999999999998888764 2344 357999999876654 354 234445666664 567
Q ss_pred ccceEEec------CcCcC-----C-CChhHH-------HHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHc-
Q 037675 326 VFDLVHAS------SGLDV-----G-GQPEKL-------EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERF- 385 (418)
Q Consensus 326 sFDlV~s~------~~L~~-----~-~~~~~l-------e~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~- 385 (418)
+||.|++. +++.. | ..+.++ ..+|.++.++|||||+++++...-..+|.++....+++..
T Consensus 318 ~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~ 397 (445)
T PRK14904 318 QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHP 397 (445)
T ss_pred CCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 89999952 22210 1 112222 3689999999999999999876555555555666777664
Q ss_pred CcEEEEEEEc--------c-cC-----CCC---ccceEEEEEEEcCC
Q 037675 386 GYKKLKWVVG--------E-KG-----ETG---KSEVYLSAVLQKPV 415 (418)
Q Consensus 386 Gfk~l~W~~~--------~-k~-----d~~---~~e~~l~Ai~qKP~ 415 (418)
+|+.+..... . .. -+. ..+.++.|.++|..
T Consensus 398 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~dGfF~a~l~k~~ 444 (445)
T PRK14904 398 EFSAEPSPGSLPEPFHEVAHPKGAILTLPGEHEGFDGGFAQRLRKNA 444 (445)
T ss_pred CCEEeccccccccccccccCCCCcEEECCCCCCCCCcEEEEEEEecC
Confidence 4543321100 0 00 011 23788999999864
No 107
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.80 E-value=3.3e-08 Score=92.02 Aligned_cols=122 Identities=21% Similarity=0.339 Sum_probs=86.1
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHH----HHcCC---CceeecccCCCCCCCCccceEEecCcCc-
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFI----AARGL---FPLYLSLDHRFPFYDNVFDLVHASSGLD- 337 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a----~eRGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~- 337 (418)
.+|||+|||.|.+...|++.+...--.++|.|+..++.| ..+|. +.+.+.++..=.|.++.||+|+--+++.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 389999999999999999987554113589999877654 33454 2344444444367889999999765544
Q ss_pred ----CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675 338 ----VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 338 ----~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~ 391 (418)
.......+..++.-+.+.|+|||+|+|..-.+..+| +...++..||..++
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dE----Lv~~f~~~~f~~~~ 202 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDE----LVEEFENFNFEYLS 202 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHH----HHHHHhcCCeEEEE
Confidence 333333345788999999999999999877666555 45557777776554
No 108
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.78 E-value=3.4e-08 Score=98.43 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=70.4
Q ss_pred CeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc------CC-CceeecccCC-CCCCCCc----cceE
Q 037675 266 RIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR------GL-FPLYLSLDHR-FPFYDNV----FDLV 330 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR------Gl-i~~~~~~~e~-LPf~d~s----FDlV 330 (418)
.+|||+|||+|..+..|++. ++.++ ++|+|+.|++.+.++ ++ +..+.++..+ ++++... ..++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~--~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYV--PIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEE--EEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 48999999999999999877 45554 589999999887664 12 1223455543 4444432 3344
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
++...+++.. +++...+|.++.++|+|||.|+|..-
T Consensus 143 ~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 143 FPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred EecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 4456777764 55567899999999999999987654
No 109
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.75 E-value=1.8e-08 Score=84.89 Aligned_cols=98 Identities=23% Similarity=0.352 Sum_probs=70.2
Q ss_pred eEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCC--CCCCccceEEecCcC
Q 037675 267 IGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFP--FYDNVFDLVHASSGL 336 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LP--f~d~sFDlV~s~~~L 336 (418)
+|||+|||+|.++..+++.+ ..+. ++|+++..++.++.+ ++ +.++.++...++ +.++.||+|+++--+
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~--gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVT--GVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEE--EEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEE--EEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 79999999999999999888 5554 589999888776653 22 345556655554 778999999997444
Q ss_pred cCC-C----ChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 337 DVG-G----QPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 337 ~~~-~----~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
... . .......++.++.|+|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 321 1 11234588999999999999997654
No 110
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.75 E-value=6.2e-08 Score=90.14 Aligned_cols=99 Identities=19% Similarity=0.241 Sum_probs=65.8
Q ss_pred HccCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCC-CCCCCCccc
Q 037675 258 LALGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHR-FPFYDNVFD 328 (418)
Q Consensus 258 L~l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~-LPf~d~sFD 328 (418)
+.+.++ .+|||+|||+|.++..+++. +..++ ++|.++.+++.+++ .++ +.++.+++.. ++.....+|
T Consensus 36 l~~~~~--~~VLDiG~G~G~~~~~la~~~~~~~V~--~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d 111 (196)
T PRK07402 36 LRLEPD--SVLWDIGAGTGTIPVEAGLLCPKGRVI--AIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPD 111 (196)
T ss_pred cCCCCC--CEEEEeCCCCCHHHHHHHHHCCCCEEE--EEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCC
Confidence 344444 48999999999999888764 34443 57999999987655 343 2334444432 332233467
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.++... . ..++.++.++.|+|||||++++...
T Consensus 112 ~v~~~~----~---~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 112 RVCIEG----G---RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EEEEEC----C---cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 765532 1 2345899999999999999988765
No 111
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.74 E-value=9.4e-08 Score=93.14 Aligned_cols=137 Identities=19% Similarity=0.269 Sum_probs=88.1
Q ss_pred cHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccc
Q 037675 250 NDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFD 328 (418)
Q Consensus 250 y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFD 328 (418)
.+.+|.. |...++. -.|-|+|||-+.+|. ..+ .|..+ |+.+. .+ .+..-++.++|.+|+|.|
T Consensus 168 ld~ii~~-ik~r~~~-~vIaD~GCGEakiA~--~~~~kV~Sf----DL~a~-----~~----~V~~cDm~~vPl~d~svD 230 (325)
T KOG3045|consen 168 LDVIIRK-IKRRPKN-IVIADFGCGEAKIAS--SERHKVHSF----DLVAV-----NE----RVIACDMRNVPLEDESVD 230 (325)
T ss_pred HHHHHHH-HHhCcCc-eEEEecccchhhhhh--ccccceeee----eeecC-----CC----ceeeccccCCcCccCccc
Confidence 3334443 2333443 379999999998775 222 35543 54321 11 223346778999999999
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEE
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLS 408 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~ 408 (418)
++++...|.. .++..++.|++|||||||.+||......-.+.. .+.+.+..+||...+-.+ .+..+..
T Consensus 231 vaV~CLSLMg----tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~-~f~r~l~~lGF~~~~~d~-------~n~~F~l 298 (325)
T KOG3045|consen 231 VAVFCLSLMG----TNLADFIKEANRILKPGGLLYIAEVKSRFSDVK-GFVRALTKLGFDVKHKDV-------SNKYFTL 298 (325)
T ss_pred EEEeeHhhhc----ccHHHHHHHHHHHhccCceEEEEehhhhcccHH-HHHHHHHHcCCeeeehhh-------hcceEEE
Confidence 9997544433 234589999999999999999987644333333 388889999998654322 2344555
Q ss_pred EEEEcCC
Q 037675 409 AVLQKPV 415 (418)
Q Consensus 409 Ai~qKP~ 415 (418)
-.++|+.
T Consensus 299 fefkK~~ 305 (325)
T KOG3045|consen 299 FEFKKTP 305 (325)
T ss_pred EEEecCC
Confidence 6677754
No 112
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.73 E-value=8.1e-08 Score=90.35 Aligned_cols=98 Identities=20% Similarity=0.089 Sum_probs=67.0
Q ss_pred HHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccceE
Q 037675 257 VLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDLV 330 (418)
Q Consensus 257 lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDlV 330 (418)
.+.+.++ .+|||+|||+|.++..|++..-.+ .++|.++.+++.++++ |+ +.+..++........+.||+|
T Consensus 73 ~l~~~~~--~~VLeiG~GsG~~t~~la~~~~~v--~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 73 LLELKPG--DRVLEIGTGSGYQAAVLAHLVRRV--FSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred hcCCCCC--CEEEEECCCccHHHHHHHHHhCEE--EEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEE
Confidence 3344444 589999999999999888774344 3579999998877653 43 234445443221234789999
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
++...+++. ..++.+.|||||.+++.-.
T Consensus 149 ~~~~~~~~~---------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPEI---------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchhh---------hHHHHHhcCCCcEEEEEEc
Confidence 997765433 3467899999999977543
No 113
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.73 E-value=1.8e-08 Score=96.64 Aligned_cols=137 Identities=18% Similarity=0.234 Sum_probs=101.2
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc---CCC-ceeecccCCCCCCCCccc
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR---GLF-PLYLSLDHRFPFYDNVFD 328 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR---Gli-~~~~~~~e~LPf~d~sFD 328 (418)
+.+.+.++++ ...+++|||||.|..+..|...||.-+ +-+|.|..|++.++.. ++. ..+.++-|.|||.+++||
T Consensus 62 laDrvfD~kk-~fp~a~diGcs~G~v~rhl~~e~vekl-i~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~D 139 (325)
T KOG2940|consen 62 LADRVFDCKK-SFPTAFDIGCSLGAVKRHLRGEGVEKL-IMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVD 139 (325)
T ss_pred HHHHHHHHhh-hCcceeecccchhhhhHHHHhcchhhe-eeeecchHHHHHhhccCCCceEEEEEecchhcccccccchh
Confidence 3444555554 356899999999999999999987533 2379999999987764 332 223478999999999999
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc----------hh---------------HHHHHHHHHH
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN----------DE---------------KKSALTRLIE 383 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----------ee---------------~~~~~~~l~~ 383 (418)
+|+++..+||..+.. ..+..+.-+|||+|.|+-+.+.... .+ ....+-.++.
T Consensus 140 LiisSlslHW~NdLP---g~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~ 216 (325)
T KOG2940|consen 140 LIISSLSLHWTNDLP---GSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLT 216 (325)
T ss_pred hhhhhhhhhhhccCc---hHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHh
Confidence 999999999875544 7889999999999998665542211 00 0134677899
Q ss_pred HcCcEEEEEEE
Q 037675 384 RFGYKKLKWVV 394 (418)
Q Consensus 384 ~~Gfk~l~W~~ 394 (418)
++||.-+..++
T Consensus 217 rAGF~m~tvDt 227 (325)
T KOG2940|consen 217 RAGFSMLTVDT 227 (325)
T ss_pred hcCcccceecc
Confidence 99998775444
No 114
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.73 E-value=1.6e-07 Score=94.18 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=76.1
Q ss_pred CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecC--
Q 037675 266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASS-- 334 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~-- 334 (418)
.+|||+|||+|.++..++.. +..++ ++|+++.+++.|+++ |+ +.++.++... ++++++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~--avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVD--AVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEE--EEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCC
Confidence 58999999999999999876 34443 589999999876553 43 3445554422 23467899999861
Q ss_pred ----c---C----cCCCC---------hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEE
Q 037675 335 ----G---L----DVGGQ---------PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKK 389 (418)
Q Consensus 335 ----~---L----~~~~~---------~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~ 389 (418)
. + ++... ....+.++.++.++|||||++++..... . +.+..++...+|.-
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~----~~~~~~~~~~~~~~ 281 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-R----VHLEEAYPDVPFTW 281 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-H----HHHHHHHhhCCCEE
Confidence 0 0 11100 1224578999999999999998864432 1 22555666666543
No 115
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.72 E-value=1.7e-07 Score=91.54 Aligned_cols=146 Identities=19% Similarity=0.310 Sum_probs=101.5
Q ss_pred ccccccccccCCcHHHHHHHHccC-----C-CCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCc
Q 037675 238 NENQRYIKARGKNDFLIDDVLALG-----S-GGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFP 311 (418)
Q Consensus 238 ~e~~~W~~~~~~y~~~I~~lL~l~-----~-g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~ 311 (418)
..|..|.+.... ..++|... + ....++||+|+|.|..+..|+..--.+ .+-+.|..|.....+||. .
T Consensus 66 gRG~MFvfS~~Q----~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v--~aTE~S~~Mr~rL~~kg~-~ 138 (265)
T PF05219_consen 66 GRGSMFVFSEEQ----FRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEV--YATEASPPMRWRLSKKGF-T 138 (265)
T ss_pred cCCcEEEecHHH----HHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceE--EeecCCHHHHHHHHhCCC-e
Confidence 355666665332 33344332 2 145689999999999999998763222 235999999999999998 3
Q ss_pred eee-cccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec--cc------C----c-------
Q 037675 312 LYL-SLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF--YC------A----N------- 371 (418)
Q Consensus 312 ~~~-~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~--~~------~----~------- 371 (418)
++- .+ +.-.+..||+|-|.++|..-..|. .+|.+|++.|+|+|.+++.-. ++ . .
T Consensus 139 vl~~~~---w~~~~~~fDvIscLNvLDRc~~P~---~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~ 212 (265)
T PF05219_consen 139 VLDIDD---WQQTDFKFDVISCLNVLDRCDRPL---TLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPV 212 (265)
T ss_pred EEehhh---hhccCCceEEEeehhhhhccCCHH---HHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCC
Confidence 332 21 222356899999999999877665 899999999999999987642 11 1 0
Q ss_pred -----hhHHHHHHHHHHHcCcEEEEEEEcc
Q 037675 372 -----DEKKSALTRLIERFGYKKLKWVVGE 396 (418)
Q Consensus 372 -----ee~~~~~~~l~~~~Gfk~l~W~~~~ 396 (418)
|+....+..+++.+||+...|...+
T Consensus 213 ~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 213 KGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred CCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 1111234488999999999998765
No 116
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.72 E-value=6.1e-08 Score=88.60 Aligned_cols=100 Identities=24% Similarity=0.354 Sum_probs=68.6
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--Cceeec-ccCCCCCCCCccceEEecCcCcC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLS-LDHRFPFYDNVFDLVHASSGLDV 338 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~-~~e~LPf~d~sFDlV~s~~~L~~ 338 (418)
.+|||+|||+|..+..+++++...-..++|+++.+++.+++ .++ +.++.. ..+.+ +++.||+|+++==++.
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~--~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL--PDGKFDLIVSNPPFHA 110 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC--CTTCEEEEEE---SBT
T ss_pred CeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc--cccceeEEEEccchhc
Confidence 48999999999999999998533111457999988877655 344 223343 33433 3799999999754433
Q ss_pred CC--ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 339 GG--QPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 339 ~~--~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
-. ....++.++.+..+.|||||.+++...
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 22 113467899999999999999976544
No 117
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.71 E-value=1.8e-07 Score=99.88 Aligned_cols=119 Identities=15% Similarity=0.207 Sum_probs=78.3
Q ss_pred CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCc-
Q 037675 266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSG- 335 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~- 335 (418)
.+|||+|||+|.++..++.. +..+ +++|+++.+++.|+++ ++ +.++.++... ++++++||+|+++--
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v--~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANV--IATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeE--EEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 48999999999999988865 3444 3579999999877654 43 2334443221 234678999999421
Q ss_pred -------------CcCC------CCh---hHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675 336 -------------LDVG------GQP---EKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 336 -------------L~~~------~~~---~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~ 391 (418)
..+. ... .....++.++.++|+|||.+++...+.+. +.+..+++..||+.+.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~----~~v~~~~~~~g~~~~~ 290 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQE----EAVTQIFLDHGYNIES 290 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchH----HHHHHHHHhcCCCceE
Confidence 1110 111 22345788999999999999886443332 3366777888887653
No 118
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.71 E-value=2.4e-07 Score=87.91 Aligned_cols=121 Identities=23% Similarity=0.351 Sum_probs=83.2
Q ss_pred eEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhH----HHHHHcCC----CceeecccCC-CC------CCCCccce
Q 037675 267 IGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYS----EFIAARGL----FPLYLSLDHR-FP------FYDNVFDL 329 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l----~~a~eRGl----i~~~~~~~e~-LP------f~d~sFDl 329 (418)
+||+||+|||..+.+++.. +++-. ..|.++... +-+.+.|+ .|+..+.... .| +..++||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~Wq--PSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQ--PSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEc--CCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 6999999999999999987 34432 246555432 22444443 3444442222 33 34679999
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch--------h---------------HHHHHHHHHHHcC
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND--------E---------------KKSALTRLIERFG 386 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e--------e---------------~~~~~~~l~~~~G 386 (418)
|+|.+++|...- ...+.++.+..++|+|||.|++-++|..+. . .-+.+.+++...|
T Consensus 106 i~~~N~lHI~p~-~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 106 IFCINMLHISPW-SAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eeehhHHHhcCH-HHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 999999986533 446789999999999999999999865420 0 1145778888888
Q ss_pred cEEE
Q 037675 387 YKKL 390 (418)
Q Consensus 387 fk~l 390 (418)
++..
T Consensus 185 L~l~ 188 (204)
T PF06080_consen 185 LELE 188 (204)
T ss_pred CccC
Confidence 8754
No 119
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.67 E-value=1.7e-07 Score=98.20 Aligned_cols=134 Identities=12% Similarity=0.186 Sum_probs=88.4
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCCC--ceeecccCCCC-C
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGLF--PLYLSLDHRFP-F 322 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGli--~~~~~~~e~LP-f 322 (418)
.+..++...+| .+|||+|||+|+.+.++++. +-.+ +++|+++.+++.+++ .|+. .+..++...++ +
T Consensus 228 ~~~~~l~~~~g--~~VLD~cagpGgkt~~la~~~~~~g~V--~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~ 303 (431)
T PRK14903 228 IVPLLMELEPG--LRVLDTCAAPGGKTTAIAELMKDQGKI--LAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY 303 (431)
T ss_pred HHHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCCCCEE--EEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh
Confidence 34445556666 48999999999999888875 2344 357999999877654 3542 34446666666 5
Q ss_pred CCCccceEEec------CcCcCC------CChh-------HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHH
Q 037675 323 YDNVFDLVHAS------SGLDVG------GQPE-------KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIE 383 (418)
Q Consensus 323 ~d~sFDlV~s~------~~L~~~------~~~~-------~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~ 383 (418)
.+++||.|++. +++..- ..+. .-..+|.+..+.|||||+++.+......+|.++.+..+++
T Consensus 304 ~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 304 VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 57889999973 222210 0111 1146789999999999999888776666666666666666
Q ss_pred Hc-CcEEE
Q 037675 384 RF-GYKKL 390 (418)
Q Consensus 384 ~~-Gfk~l 390 (418)
+. +|+.+
T Consensus 384 ~~~~~~~~ 391 (431)
T PRK14903 384 EQKDAEVI 391 (431)
T ss_pred hCCCcEEe
Confidence 42 45433
No 120
>PHA03411 putative methyltransferase; Provisional
Probab=98.63 E-value=3.1e-07 Score=90.79 Aligned_cols=121 Identities=13% Similarity=0.117 Sum_probs=85.3
Q ss_pred CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcC-CCceeecccCCCCCCCCccceEEecCcCcCCCCh
Q 037675 266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARG-LFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP 342 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRG-li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~ 342 (418)
.+|||+|||+|.++..++++ +..++ ++|+++.|++.++++- -+.++.++...+. .+++||+|+++--+.+....
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~--gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIV--CVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTT 142 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCch
Confidence 48999999999999888775 34553 5799999999888752 1345566666654 35789999998666643211
Q ss_pred --hH---------------HHHHHHHhhccccCCcEEEEEe---cccCchhHHHHHHHHHHHcCcEE
Q 037675 343 --EK---------------LEFLMFDFDRILRAGGLFWLDN---FYCANDEKKSALTRLIERFGYKK 389 (418)
Q Consensus 343 --~~---------------le~~L~Ei~RVLRPGG~~ii~~---~~~~~ee~~~~~~~l~~~~Gfk~ 389 (418)
.+ +..++..+.++|+|+|.+++.. +..+..-..++|..+++..||..
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence 11 3578889999999999775542 12222333457999999999964
No 121
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.61 E-value=9.9e-08 Score=91.36 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=74.5
Q ss_pred CCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675 263 GGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGG 340 (418)
Q Consensus 263 g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~ 340 (418)
...++|+|||+|+|.++..++++ ++.++ .+|. +..++.+.+..-+.+..++.. -|+|. +|+++..++||.|.
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~--v~Dl-p~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRAT--VFDL-PEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEE--EEE--HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcce--eecc-HhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 34579999999999999999987 45543 3576 666666666544455556554 45555 99999999999997
Q ss_pred ChhHHHHHHHHhhccccCC--cEEEEEeccc
Q 037675 341 QPEKLEFLMFDFDRILRAG--GLFWLDNFYC 369 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPG--G~~ii~~~~~ 369 (418)
+. ....+|+.+.+.|+|| |.++|.+...
T Consensus 173 d~-~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 173 DE-DCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp HH-HHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred hH-HHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 65 4568999999999999 9999988754
No 122
>PRK00811 spermidine synthase; Provisional
Probab=98.61 E-value=1.8e-07 Score=92.62 Aligned_cols=100 Identities=21% Similarity=0.263 Sum_probs=68.9
Q ss_pred CCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc------CC-----CceeecccCC-CCCCCCccceE
Q 037675 264 GIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR------GL-----FPLYLSLDHR-FPFYDNVFDLV 330 (418)
Q Consensus 264 ~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR------Gl-----i~~~~~~~e~-LPf~d~sFDlV 330 (418)
..++|||+|||.|..+..+.++ ++.-+ ..+|+++.+++.+++. +. +.++++++.. +...+++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V-~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKI-TLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEE-EEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3569999999999999999887 55332 3479999999888763 11 2334444432 23357799999
Q ss_pred EecCcCcCCCChhH--HHHHHHHhhccccCCcEEEEE
Q 037675 331 HASSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 331 ~s~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~ 365 (418)
++...- ++..... -+.++.++.|.|+|||.+++.
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 986432 2222221 147889999999999998764
No 123
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.59 E-value=4e-07 Score=86.99 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=86.2
Q ss_pred CCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc-----CC-CceeecccCCCCCCCCccceEEecCcCc
Q 037675 264 GIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR-----GL-FPLYLSLDHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 264 ~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR-----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~ 337 (418)
...++||.|+|.|..+..|.-.-...| ..+|..+.+++.|.+. +. ...+.-..+.+-..++.||+|++-.|+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~V-DlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEV-DLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEE-EEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEe-EEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 467899999999999987765533322 1259999999998853 11 2233345666654567999999999999
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEecccCch------------hHHHHHHHHHHHcCcEEEEEEE
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND------------EKKSALTRLIERFGYKKLKWVV 394 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e------------e~~~~~~~l~~~~Gfk~l~W~~ 394 (418)
|..+. ++-.+|......|+|||.++|-+-.+..+ ...+.|..+++++|++.++-..
T Consensus 134 hLTD~-dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 134 HLTDE-DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEK 201 (218)
T ss_dssp GS-HH-HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred cCCHH-HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence 99875 57789999999999999998876533221 1246799999999999986443
No 124
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.59 E-value=5.6e-07 Score=87.72 Aligned_cols=134 Identities=17% Similarity=0.210 Sum_probs=83.4
Q ss_pred CcHHHHHHHHcc-C-CCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CCCceeecccCC-
Q 037675 249 KNDFLIDDVLAL-G-SGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GLFPLYLSLDHR- 319 (418)
Q Consensus 249 ~y~~~I~~lL~l-~-~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~~~e~- 319 (418)
.++.+++.++.. . .....+|||+|||+|.++..+++. +..++ ++|+++.+++.++++ +. .++.++...
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~--~vDis~~al~~A~~N~~~~~~-~~~~~D~~~~ 145 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELH--AADIDPAAVRCARRNLADAGG-TVHEGDLYDA 145 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHHHHcCC-EEEEeechhh
Confidence 455556555442 2 112247999999999999998865 34553 579999998876653 33 445554432
Q ss_pred CCC-CCCccceEEecCcCc------C-------CCC----------hhHHHHHHHHhhccccCCcEEEEEecccCchhHH
Q 037675 320 FPF-YDNVFDLVHASSGLD------V-------GGQ----------PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKK 375 (418)
Q Consensus 320 LPf-~d~sFDlV~s~~~L~------~-------~~~----------~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~ 375 (418)
++- ..+.||+|+++-=.. . ..+ .+-+..++..+.++|||||.+++.....+.
T Consensus 146 l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~---- 221 (251)
T TIGR03704 146 LPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQA---- 221 (251)
T ss_pred cchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchH----
Confidence 321 135799999862111 0 000 111357788888999999999887553322
Q ss_pred HHHHHHHHHcCcEE
Q 037675 376 SALTRLIERFGYKK 389 (418)
Q Consensus 376 ~~~~~l~~~~Gfk~ 389 (418)
+.+..+++..||+.
T Consensus 222 ~~v~~~l~~~g~~~ 235 (251)
T TIGR03704 222 PLAVEAFARAGLIA 235 (251)
T ss_pred HHHHHHHHHCCCCc
Confidence 23666777788753
No 125
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.58 E-value=6.2e-07 Score=87.42 Aligned_cols=138 Identities=16% Similarity=0.210 Sum_probs=91.4
Q ss_pred CCcHHHHHHHHc---cCCCCCCeEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHHHHc----CC---Cceeec
Q 037675 248 GKNDFLIDDVLA---LGSGGIRIGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFIAAR----GL---FPLYLS 315 (418)
Q Consensus 248 ~~y~~~I~~lL~---l~~g~~r~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~ 315 (418)
.++.+-+|.+|= ......++|||+|||+|..+..++++ . +.++ ++++.+.+.++|.+. ++ +.++++
T Consensus 25 ~~~~~~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~--~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~ 102 (248)
T COG4123 25 CGFRYGTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIV--GVEIQEEAAEMAQRNVALNPLEERIQVIEA 102 (248)
T ss_pred CccccccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEE--EEEeCHHHHHHHHHHHHhCcchhceeEehh
Confidence 345555555431 11222579999999999999999998 4 5554 479999988887663 22 455566
Q ss_pred ccCCCC--CCCCccceEEecCcCc---------------CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHH
Q 037675 316 LDHRFP--FYDNVFDLVHASSGLD---------------VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSAL 378 (418)
Q Consensus 316 ~~e~LP--f~d~sFDlV~s~~~L~---------------~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~ 378 (418)
+..++. ..-.+||+|+|+==+. ++.....++.++.-..++|||||++.+..+. +.-.++
T Consensus 103 Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~----erl~ei 178 (248)
T COG4123 103 DIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP----ERLAEI 178 (248)
T ss_pred hHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH----HHHHHH
Confidence 655553 2344799999962111 1222345788999999999999999776553 322346
Q ss_pred HHHHHHcCcEEEE
Q 037675 379 TRLIERFGYKKLK 391 (418)
Q Consensus 379 ~~l~~~~Gfk~l~ 391 (418)
..++..++|...+
T Consensus 179 ~~~l~~~~~~~k~ 191 (248)
T COG4123 179 IELLKSYNLEPKR 191 (248)
T ss_pred HHHHHhcCCCceE
Confidence 7778887776555
No 126
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.57 E-value=5.9e-07 Score=86.63 Aligned_cols=99 Identities=10% Similarity=-0.004 Sum_probs=77.6
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH-cCC-----------------CceeecccCCCCCCC---
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA-RGL-----------------FPLYLSLDHRFPFYD--- 324 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e-RGl-----------------i~~~~~~~e~LPf~d--- 324 (418)
.+||+.|||.|.-+..|+++|..|+ ++|+|+..++.+.+ .++ +.++.++.-.++...
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~--GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVI--GIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEE--EEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 5899999999999999999999876 58999987776533 211 244556666776422
Q ss_pred CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 325 NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 325 ~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+.||+|+-..+|+... ++.-..+...|.++|+|||.+++..+
T Consensus 123 ~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 123 PVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 6899999999998874 45667999999999999998866554
No 127
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.55 E-value=1.5e-07 Score=95.39 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=70.4
Q ss_pred CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC---------------C-CceeecccC------CCCC
Q 037675 265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG---------------L-FPLYLSLDH------RFPF 322 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG---------------l-i~~~~~~~e------~LPf 322 (418)
..+|||+|||-|+-..-....++.-+ +++|++..-++.|++|- . ..++.+++. .++.
T Consensus 63 ~~~VLDl~CGkGGDL~Kw~~~~i~~~-vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 63 GLTVLDLCCGKGGDLQKWQKAKIKHY-VGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp T-EEEEET-TTTTTHHHHHHTT-SEE-EEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCeEEEecCCCchhHHHHHhcCCCEE-EEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 46899999999987666666665543 45899998888887764 1 011223322 2333
Q ss_pred CCCccceEEecCcCcC-CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 323 YDNVFDLVHASSGLDV-GGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 323 ~d~sFDlV~s~~~L~~-~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
....||+|-|..+||+ +...+..+.+|..+.+.|||||+||.+.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 3469999999999996 56677788899999999999999988765
No 128
>PRK04457 spermidine synthase; Provisional
Probab=98.54 E-value=1.2e-06 Score=86.02 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=66.9
Q ss_pred CCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc-CC------CceeecccCC-CCCCCCccceEEecC
Q 037675 265 IRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR-GL------FPLYLSLDHR-FPFYDNVFDLVHASS 334 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR-Gl------i~~~~~~~e~-LPf~d~sFDlV~s~~ 334 (418)
.++|||||||+|.++..++++. ..+ .++|+++.+++.|++. +. +.++++++.. ++-.+++||+|++..
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v--~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQ--TAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeE--EEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4689999999999999998762 333 3579999999998875 21 1234454322 222346899999853
Q ss_pred cCcCCCCh--hHHHHHHHHhhccccCCcEEEEE
Q 037675 335 GLDVGGQP--EKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 335 ~L~~~~~~--~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
++....+ .....++.++.++|+|||.+++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 2211111 11248999999999999999774
No 129
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=2.1e-06 Score=85.17 Aligned_cols=133 Identities=22% Similarity=0.300 Sum_probs=86.2
Q ss_pred cccCCcHHHHHHHHc-cCCCCCCeEEEECCccChHHHHHhhcCc--EEEEeccCCCHHhHHHHHH----cCCCceee---
Q 037675 245 KARGKNDFLIDDVLA-LGSGGIRIGFDIGGGSGTFAARMAERNV--TVITNTLNVDAPYSEFIAA----RGLFPLYL--- 314 (418)
Q Consensus 245 ~~~~~y~~~I~~lL~-l~~g~~r~VLDvGCGtG~faa~La~~gV--~vv~~alD~s~~~l~~a~e----RGli~~~~--- 314 (418)
.|...+..+++.++. +..... +|||+|||+|..|..++.... .| .++|+|+..++.|++ .|+..+..
T Consensus 91 iPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V--~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~ 167 (280)
T COG2890 91 IPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEV--IAVDISPDALALARENAERNGLVRVLVVQS 167 (280)
T ss_pred ecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeE--EEEECCHHHHHHHHHHHHHcCCccEEEEee
Confidence 444556666666542 222222 799999999999999998854 44 468999988876654 45433222
Q ss_pred cccCCCCCCCCccceEEec--CcCcC-----------------CC---ChhHHHHHHHHhhccccCCcEEEEEecccCch
Q 037675 315 SLDHRFPFYDNVFDLVHAS--SGLDV-----------------GG---QPEKLEFLMFDFDRILRAGGLFWLDNFYCAND 372 (418)
Q Consensus 315 ~~~e~LPf~d~sFDlV~s~--~~L~~-----------------~~---~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e 372 (418)
++.+.+ .+.||+|+++ ++=.. +. -.+-...++.++.+.|+|||.+++..-+.+.+
T Consensus 168 dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~ 244 (280)
T COG2890 168 DLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGE 244 (280)
T ss_pred eccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHH
Confidence 233333 3389999996 11110 00 11245678899999999999998876655544
Q ss_pred hHHHHHHHHHHHcCc
Q 037675 373 EKKSALTRLIERFGY 387 (418)
Q Consensus 373 e~~~~~~~l~~~~Gf 387 (418)
. +.+++...|+
T Consensus 245 ~----v~~~~~~~~~ 255 (280)
T COG2890 245 A----VKALFEDTGF 255 (280)
T ss_pred H----HHHHHHhcCC
Confidence 4 6777888884
No 130
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.52 E-value=4.2e-07 Score=91.90 Aligned_cols=95 Identities=20% Similarity=0.229 Sum_probs=65.9
Q ss_pred HccCCCCCCeEEEECCccChHHHHHhhc-Cc--EEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCCCCCCccc
Q 037675 258 LALGSGGIRIGFDIGGGSGTFAARMAER-NV--TVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFPFYDNVFD 328 (418)
Q Consensus 258 L~l~~g~~r~VLDvGCGtG~faa~La~~-gV--~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LPf~d~sFD 328 (418)
+++.++ .+|||+|||+|.+++.+++. +. .++ ++|.++.+++.|++ .|+ +.+..++....+.....||
T Consensus 76 L~i~~g--~~VLDIG~GtG~~a~~LA~~~~~~g~Vv--gVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD 151 (322)
T PRK13943 76 VGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVV--SVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYD 151 (322)
T ss_pred cCCCCC--CEEEEEeCCccHHHHHHHHhcCCCCEEE--EEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCcc
Confidence 345555 48999999999999999875 21 233 47999999987765 344 2334455555555557899
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
+|++...+.. ....+.++|||||.+++.
T Consensus 152 ~Ii~~~g~~~---------ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 152 VIFVTVGVDE---------VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred EEEECCchHH---------hHHHHHHhcCCCCEEEEE
Confidence 9998754432 233567899999998774
No 131
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.51 E-value=7e-07 Score=81.30 Aligned_cols=96 Identities=13% Similarity=0.117 Sum_probs=69.9
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ 341 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~ 341 (418)
.+|||+|||+|.++..+++++..++ ++|.++.+++.++++- -+.++.+++.++++++..||.|+++--++..
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~~v~--~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~-- 90 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAARVT--AIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYNIS-- 90 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCCeEE--EEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCcccH--
Confidence 4899999999999999999865553 4799999998887652 2356678888999888889999987544432
Q ss_pred hhHHHHHHHHhhccccCCcEEEEEec
Q 037675 342 PEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 342 ~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
...+..++.+.. +.++|++++...
T Consensus 91 ~~~i~~~l~~~~--~~~~~~l~~q~e 114 (169)
T smart00650 91 TPILFKLLEEPP--AFRDAVLMVQKE 114 (169)
T ss_pred HHHHHHHHhcCC--CcceEEEEEEHH
Confidence 233444444322 568898877654
No 132
>PRK01581 speE spermidine synthase; Validated
Probab=98.47 E-value=1.9e-06 Score=88.42 Aligned_cols=128 Identities=13% Similarity=0.123 Sum_probs=80.2
Q ss_pred CCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHc--------C-C----CceeecccCC-CCCCCCccc
Q 037675 264 GIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAAR--------G-L----FPLYLSLDHR-FPFYDNVFD 328 (418)
Q Consensus 264 ~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eR--------G-l----i~~~~~~~e~-LPf~d~sFD 328 (418)
..++||++|||+|..+..+.+.+ +.-+ ..+|+++.+++.|++. + + +.++++++.+ ++-.++.||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~I-t~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHV-DLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 35699999999999888888764 3332 3479999999999862 1 1 1223443333 334567899
Q ss_pred eEEecCcCcCCCC---hhHHHHHHHHhhccccCCcEEEEEecccC-chhHHHHHHHHHHHcCcEEEEEE
Q 037675 329 LVHASSGLDVGGQ---PEKLEFLMFDFDRILRAGGLFWLDNFYCA-NDEKKSALTRLIERFGYKKLKWV 393 (418)
Q Consensus 329 lV~s~~~L~~~~~---~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-~ee~~~~~~~l~~~~Gfk~l~W~ 393 (418)
+|++... ..... .---..++..+.+.|+|||.+++...... ..+.-..+...++..++......
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~ 296 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYH 296 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEE
Confidence 9998732 11110 01113688999999999999866532111 11221235667778888766433
No 133
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=4.3e-06 Score=83.43 Aligned_cols=112 Identities=21% Similarity=0.307 Sum_probs=73.7
Q ss_pred CcHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCc--EEEEeccCCCHHhHHHHHH----cCCCc--eeecccCCC
Q 037675 249 KNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNV--TVITNTLNVDAPYSEFIAA----RGLFP--LYLSLDHRF 320 (418)
Q Consensus 249 ~y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV--~vv~~alD~s~~~l~~a~e----RGli~--~~~~~~e~L 320 (418)
+.+.+++. ++...+ .+|||+|||.|-++..|++++. .+. -+|++...++.+++ .++.. ++.++. -.
T Consensus 146 GS~lLl~~-l~~~~~--~~vlDlGCG~Gvlg~~la~~~p~~~vt--mvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~-~~ 219 (300)
T COG2813 146 GSRLLLET-LPPDLG--GKVLDLGCGYGVLGLVLAKKSPQAKLT--LVDVNARAVESARKNLAANGVENTEVWASNL-YE 219 (300)
T ss_pred HHHHHHHh-CCccCC--CcEEEeCCCccHHHHHHHHhCCCCeEE--EEecCHHHHHHHHHhHHHcCCCccEEEEecc-cc
Confidence 34445544 343333 2899999999999999999852 221 16999888877654 34432 233322 22
Q ss_pred CCCCCccceEEecCcCcCCC--ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 321 PFYDNVFDLVHASSGLDVGG--QPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 321 Pf~d~sFDlV~s~~~L~~~~--~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+..+ .||+|+|+==||--. ...--+.++.+..+.|++||.+||..-
T Consensus 220 ~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 220 PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 3344 999999986666321 122234789999999999999988765
No 134
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.43 E-value=6.1e-06 Score=81.06 Aligned_cols=100 Identities=19% Similarity=0.235 Sum_probs=65.5
Q ss_pred CCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHcC--C--------CceeecccCC-CCCCCCccceEE
Q 037675 264 GIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAARG--L--------FPLYLSLDHR-FPFYDNVFDLVH 331 (418)
Q Consensus 264 ~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eRG--l--------i~~~~~~~e~-LPf~d~sFDlV~ 331 (418)
..++|||+|||+|.++..+.++. +.-+ ..+|+++.+++.+++.- . +.+..++... +...+++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v-~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKA-TLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceE-EEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34699999999999998888774 3222 34799999988776631 0 1222222211 222357899999
Q ss_pred ecCcCcCCCChhH--HHHHHHHhhccccCCcEEEEE
Q 037675 332 ASSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 332 s~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~ 365 (418)
+..... ...... .+.++..+.+.|+|||.+++.
T Consensus 151 ~D~~~~-~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDP-VGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCC-CCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 865422 221111 247889999999999999775
No 135
>PRK03612 spermidine synthase; Provisional
Probab=98.43 E-value=1.9e-06 Score=92.24 Aligned_cols=123 Identities=13% Similarity=0.091 Sum_probs=79.4
Q ss_pred CCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHcC-------------CCceeecccCC-CCCCCCccc
Q 037675 264 GIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAARG-------------LFPLYLSLDHR-FPFYDNVFD 328 (418)
Q Consensus 264 ~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eRG-------------li~~~~~~~e~-LPf~d~sFD 328 (418)
+.++|||+|||+|..+..+.+++ +.-+ ..+|+++++++.+++.- .+.++.++..+ +...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v-~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQV-TLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeE-EEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 34689999999999999988874 3322 35899999999988731 11233444433 233457899
Q ss_pred eEEecCcCcCCCChh--HHHHHHHHhhccccCCcEEEEEecc-cCchhHHHHHHHHHHHcCc
Q 037675 329 LVHASSGLDVGGQPE--KLEFLMFDFDRILRAGGLFWLDNFY-CANDEKKSALTRLIERFGY 387 (418)
Q Consensus 329 lV~s~~~L~~~~~~~--~le~~L~Ei~RVLRPGG~~ii~~~~-~~~ee~~~~~~~l~~~~Gf 387 (418)
+|++........... --+.++.++.+.|||||.+++.... ....+.-..+.+.+++.||
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 999974322111000 0135788999999999999875421 1122222456777888888
No 136
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.38 E-value=2.7e-06 Score=68.71 Aligned_cols=95 Identities=26% Similarity=0.352 Sum_probs=65.3
Q ss_pred EEEECCccChHH--HHHhhcCcEEEEeccCCCHHhHHHHHHcCC------CceeecccCC--CCCCC-CccceEEecCcC
Q 037675 268 GFDIGGGSGTFA--ARMAERNVTVITNTLNVDAPYSEFIAARGL------FPLYLSLDHR--FPFYD-NVFDLVHASSGL 336 (418)
Q Consensus 268 VLDvGCGtG~fa--a~La~~gV~vv~~alD~s~~~l~~a~eRGl------i~~~~~~~e~--LPf~d-~sFDlV~s~~~L 336 (418)
++|+|||+|... ..+...+..+++ +|.++.+++.+..+.. +.....+... +|+.+ ..||++ +....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG--VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE--EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 999999999855 333332335543 7999988876544331 1344444444 88888 599999 66555
Q ss_pred cCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675 337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY 368 (418)
Q Consensus 337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~ 368 (418)
.++.. ....+.++.|+|+|+|.+++....
T Consensus 129 ~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 129 LHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred hhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 44433 348999999999999999887663
No 137
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.34 E-value=1e-06 Score=83.95 Aligned_cols=98 Identities=24% Similarity=0.354 Sum_probs=63.7
Q ss_pred HHHHHccCCCCCCeEEEECCccChHHHHHhhc-C-cE-EEEeccCCCHHhHHHHHHc----CC--Cceeeccc-CCCCCC
Q 037675 254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER-N-VT-VITNTLNVDAPYSEFIAAR----GL--FPLYLSLD-HRFPFY 323 (418)
Q Consensus 254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-g-V~-vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~-e~LPf~ 323 (418)
+-+.+.+++|. +|||||||+|.+++.|+.. + +. |+ ++|.++...+.|+++ |+ +.+.+++. ..+| .
T Consensus 64 ~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv--~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-~ 138 (209)
T PF01135_consen 64 MLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVV--SVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP-E 138 (209)
T ss_dssp HHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEE--EEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-G
T ss_pred HHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEE--EECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-c
Confidence 33445677774 9999999999999999876 3 32 33 479999888777654 44 23445543 2332 3
Q ss_pred CCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 324 DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 324 d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
...||.|++....... +. ++.+-||+||++++-
T Consensus 139 ~apfD~I~v~~a~~~i--p~-------~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEI--PE-------ALLEQLKPGGRLVAP 171 (209)
T ss_dssp G-SEEEEEESSBBSS----H-------HHHHTEEEEEEEEEE
T ss_pred CCCcCEEEEeeccchH--HH-------HHHHhcCCCcEEEEE
Confidence 4579999998877533 22 566779999999663
No 138
>PLN02366 spermidine synthase
Probab=98.32 E-value=7.3e-06 Score=82.45 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=66.2
Q ss_pred CCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcC------C----CceeecccCCC--CCCCCccceEE
Q 037675 265 IRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARG------L----FPLYLSLDHRF--PFYDNVFDLVH 331 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRG------l----i~~~~~~~e~L--Pf~d~sFDlV~ 331 (418)
.++||+||||.|..+..++++ ++.-+ ..+|+++.+++.+++.- + +.++.+++..+ ..+++.||+|+
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V-~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQI-DICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeE-EEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 569999999999999999987 34332 24699999998877631 1 23344443211 12367899999
Q ss_pred ecCcCcCCCChhH--HHHHHHHhhccccCCcEEEEE
Q 037675 332 ASSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 332 s~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~ 365 (418)
+...- ++..... -+.++..+.+.|+|||.+++-
T Consensus 171 ~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 171 VDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 85432 2222111 236889999999999998653
No 139
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.31 E-value=9.1e-07 Score=88.66 Aligned_cols=103 Identities=15% Similarity=0.119 Sum_probs=73.6
Q ss_pred CCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----------C--Cceeeccc------CCCCCCCC
Q 037675 264 GIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----------L--FPLYLSLD------HRFPFYDN 325 (418)
Q Consensus 264 ~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----------l--i~~~~~~~------e~LPf~d~ 325 (418)
....++|+|||-|+-..-.-+.|+--. +++|+.+.-++.|+.|- + +.++.+++ +.+++.+.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~-igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEY-IGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccce-EeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 345799999999987766655554322 23677776666555541 1 12233433 46677787
Q ss_pred ccceEEecCcCcC-CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 326 VFDLVHASSGLDV-GGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 326 sFDlV~s~~~L~~-~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.||+|-|-.++|. +...+....+|..+.+.|||||+||-+.|
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 8999999999995 66667778999999999999999977765
No 140
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.28 E-value=6.1e-06 Score=79.10 Aligned_cols=125 Identities=20% Similarity=0.179 Sum_probs=84.6
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHH-HHcCCC-----------------ceeecccCCCCCCC-Cc
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFI-AARGLF-----------------PLYLSLDHRFPFYD-NV 326 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a-~eRGli-----------------~~~~~~~e~LPf~d-~s 326 (418)
.+||+.|||.|.-+..|+++|..|+ ++|+|+..++.+ .++++. .++.++.-.++-.. +.
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~~Vv--GvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~ 116 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGHDVV--GVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGK 116 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTEEEE--EEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHS
T ss_pred CeEEEeCCCChHHHHHHHHCCCeEE--EEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCC
Confidence 4899999999999999999998886 489999888776 444431 12234444544333 47
Q ss_pred cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec-ccC----ch---hHHHHHHHHHHHcCcEEEEEEE
Q 037675 327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF-YCA----ND---EKKSALTRLIERFGYKKLKWVV 394 (418)
Q Consensus 327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~-~~~----~e---e~~~~~~~l~~~~Gfk~l~W~~ 394 (418)
||+|+=..+|+-.+ ++.-+.+...|.++|||||.+++... +.. ++ -..+++.+++. -+|+......
T Consensus 117 fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 117 FDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp EEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred ceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 99999988887664 55677999999999999999433332 211 11 12355777777 5677655444
No 141
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.28 E-value=2.4e-06 Score=82.51 Aligned_cols=123 Identities=24% Similarity=0.306 Sum_probs=82.5
Q ss_pred CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCC----CceeecccCCC--CCCCCccceEEec-
Q 037675 266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGL----FPLYLSLDHRF--PFYDNVFDLVHAS- 333 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGl----i~~~~~~~e~L--Pf~d~sFDlV~s~- 333 (418)
.+|||.-.|-|.+|..-.++|. .|++ ++.+++.++.|.- |++ +.++.+++.++ .|.|.+||.|+-.
T Consensus 136 ~rVLDtC~GLGYtAi~a~~rGA~~Vit--vEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP 213 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALERGAIHVIT--VEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP 213 (287)
T ss_pred CEeeeeccCccHHHHHHHHcCCcEEEE--EeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence 5999999999999999999996 6654 4555555555433 333 34556665544 4789999999753
Q ss_pred CcCcCCCChhHHHHHHHHhhccccCCcEEE--EEecc--cCchhHHHHHHHHHHHcCcEEEE
Q 037675 334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFW--LDNFY--CANDEKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~i--i~~~~--~~~ee~~~~~~~l~~~~Gfk~l~ 391 (418)
=-|...... =-+.+..|++|||||||.++ +..+. ..+-+......+.+++.||.+++
T Consensus 214 PRfS~AgeL-YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 214 PRFSLAGEL-YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred CccchhhhH-hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeee
Confidence 112221111 12478999999999999882 33332 12345556688889999999875
No 142
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.25 E-value=5.4e-06 Score=80.01 Aligned_cols=106 Identities=13% Similarity=0.169 Sum_probs=69.9
Q ss_pred HHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCC-CC-
Q 037675 254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHR-FP- 321 (418)
Q Consensus 254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~-LP- 321 (418)
+..++.+..+ ++|||+|||+|..+..|+.. +-.+ +++|.++.+++.|++ .|+ +.++.+++.+ ++
T Consensus 60 L~~l~~~~~~--~~vLEiGt~~G~s~l~la~~~~~~g~v--~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~ 135 (234)
T PLN02781 60 LSMLVKIMNA--KNTLEIGVFTGYSLLTTALALPEDGRI--TAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQ 135 (234)
T ss_pred HHHHHHHhCC--CEEEEecCcccHHHHHHHHhCCCCCEE--EEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH
Confidence 3334444433 58999999999877766653 2334 347999888877654 354 3344554432 22
Q ss_pred ----CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675 322 ----FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC 369 (418)
Q Consensus 322 ----f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~ 369 (418)
.++++||+|+... ++.....++.++.+.|||||.+++++..+
T Consensus 136 l~~~~~~~~fD~VfiDa------~k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 136 LLNNDPKPEFDFAFVDA------DKPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred HHhCCCCCCCCEEEECC------CHHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 1256899999743 12344588999999999999998877644
No 143
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.23 E-value=4.2e-05 Score=71.64 Aligned_cols=122 Identities=19% Similarity=0.200 Sum_probs=79.6
Q ss_pred HccCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHH----HcCCC--ceeeccc-CCCCCCCCccc
Q 037675 258 LALGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIA----ARGLF--PLYLSLD-HRFPFYDNVFD 328 (418)
Q Consensus 258 L~l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~----eRGli--~~~~~~~-e~LPf~d~sFD 328 (418)
|.+.+|+ .++|||||||+.+..++-. .-.+ +++|-++..++.+. .-|+. .++.+++ +.|+-.+ +||
T Consensus 30 L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v--~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~d 104 (187)
T COG2242 30 LRPRPGD--RLWDIGAGTGSITIEWALAGPSGRV--IAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPD 104 (187)
T ss_pred hCCCCCC--EEEEeCCCccHHHHHHHHhCCCceE--EEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCC
Confidence 4556664 8999999999999888833 3444 35788877765443 33542 2334543 3444333 899
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCc-EEEEEEE
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGY-KKLKWVV 394 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gf-k~l~W~~ 394 (418)
.|+.... - .++.+|......|||||.+++..-. -|......+.+++.|+ +.++-.+
T Consensus 105 aiFIGGg-~------~i~~ile~~~~~l~~ggrlV~nait---lE~~~~a~~~~~~~g~~ei~~v~i 161 (187)
T COG2242 105 AIFIGGG-G------NIEEILEAAWERLKPGGRLVANAIT---LETLAKALEALEQLGGREIVQVQI 161 (187)
T ss_pred EEEECCC-C------CHHHHHHHHHHHcCcCCeEEEEeec---HHHHHHHHHHHHHcCCceEEEEEe
Confidence 9998775 2 2348899999999999999775332 2333345667888899 5554333
No 144
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.22 E-value=2.9e-05 Score=81.46 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=74.7
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--CceeecccC----CCCCCCCccceEEecCc
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDH----RFPFYDNVFDLVHASSG 335 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e----~LPf~d~sFDlV~s~~~ 335 (418)
.+|||+|||+|.++..|++++..++ ++|.++.|++.|+++ |+ +.++.++.. .+++.+++||+|++.-
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~~V~--gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP- 375 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAAEVV--GVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP- 375 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCCEEE--EEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc-
Confidence 4899999999999999998876554 589999999877653 43 234445443 3456678899998732
Q ss_pred CcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEE
Q 037675 336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVV 394 (418)
Q Consensus 336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~ 394 (418)
+..++...+..+.+ ++|++.++++.- ...+...+.. +...||+..+-..
T Consensus 376 -----Pr~g~~~~~~~l~~-~~~~~ivyvSCn---p~tlaRDl~~-L~~~gY~l~~i~~ 424 (443)
T PRK13168 376 -----PRAGAAEVMQALAK-LGPKRIVYVSCN---PATLARDAGV-LVEAGYRLKRAGM 424 (443)
T ss_pred -----CCcChHHHHHHHHh-cCCCeEEEEEeC---hHHhhccHHH-HhhCCcEEEEEEE
Confidence 11223355555555 699999988742 2222222333 3456887665433
No 145
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.19 E-value=9.5e-06 Score=80.91 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=68.7
Q ss_pred eEEEECCccC----hHHHHHhhc------CcEEEEeccCCCHHhHHHHHHc--------CCC------------------
Q 037675 267 IGFDIGGGSG----TFAARMAER------NVTVITNTLNVDAPYSEFIAAR--------GLF------------------ 310 (418)
Q Consensus 267 ~VLDvGCGtG----~faa~La~~------gV~vv~~alD~s~~~l~~a~eR--------Gli------------------ 310 (418)
+|...||.|| +.|..|.+. .+.+ ++.|+++..++.|++- ++.
T Consensus 118 rIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I--~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 118 RVWSAAASTGEEPYSIAMTLADTLGTAPGRWKV--FASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred EEEEccccCCHHHHHHHHHHHHhhcccCCCcEE--EEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 8999999999 466666663 2455 3689999999876552 110
Q ss_pred -----------ceeecccCCCCCC-CCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 311 -----------PLYLSLDHRFPFY-DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 311 -----------~~~~~~~e~LPf~-d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
.+...+....|++ .+.||+|+|.++|.+..+ +....++..+.+.|+|||+|++.+
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDK-TTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0001122232443 578999999999988854 456799999999999999997765
No 146
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=1.3e-05 Score=78.15 Aligned_cols=130 Identities=16% Similarity=0.147 Sum_probs=84.6
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CCCc---eeecccCCCCCCC
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GLFP---LYLSLDHRFPFYD 324 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gli~---~~~~~~e~LPf~d 324 (418)
+|-..+.+.+|. +|||.|.|+|.++++|+.. |-+.-.++.|..+.+.+.|.+. |+.. ...++....-+.+
T Consensus 85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 555566788875 8999999999999999953 3221113468888888877653 4433 2234544443444
Q ss_pred CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE-EEEcc
Q 037675 325 NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK-WVVGE 396 (418)
Q Consensus 325 ~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~-W~~~~ 396 (418)
.||.|+... -.+| .++..++.+|||||.+++-.++. ++.++.+.. +++.||..++ |++..
T Consensus 163 -~vDav~LDm-p~PW-------~~le~~~~~Lkpgg~~~~y~P~v--eQv~kt~~~-l~~~g~~~ie~~E~l~ 223 (256)
T COG2519 163 -DVDAVFLDL-PDPW-------NVLEHVSDALKPGGVVVVYSPTV--EQVEKTVEA-LRERGFVDIEAVETLV 223 (256)
T ss_pred -ccCEEEEcC-CChH-------HHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHHH-HHhcCccchhhheeee
Confidence 899998522 2233 78899999999999886654433 344444444 4555998775 55533
No 147
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1e-05 Score=77.01 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=70.6
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--Cceeec-ccCCCCCCCC
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLS-LDHRFPFYDN 325 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~-~~e~LPf~d~ 325 (418)
.+-+.|.+.+|. +|||||||+|..++.|++..-.|+ +++..+...+.|+++ |+ +.+.++ ....+| +..
T Consensus 63 ~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~--siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~~a 137 (209)
T COG2518 63 RMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVV--SIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-EEA 137 (209)
T ss_pred HHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEE--EEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-CCC
Confidence 455566777774 999999999999999999844554 368888888877653 44 334444 334443 236
Q ss_pred ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
.||.|+.+....... + -+.+-|||||++++-.
T Consensus 138 PyD~I~Vtaaa~~vP--~-------~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 138 PYDRIIVTAAAPEVP--E-------ALLDQLKPGGRLVIPV 169 (209)
T ss_pred CcCEEEEeeccCCCC--H-------HHHHhcccCCEEEEEE
Confidence 799999988776553 2 3455799999997743
No 148
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.16 E-value=4.3e-06 Score=92.63 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=77.4
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCC----ceeecccCC-CCCCCCccceEEecC-c
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLF----PLYLSLDHR-FPFYDNVFDLVHASS-G 335 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli----~~~~~~~e~-LPf~d~sFDlV~s~~-~ 335 (418)
++|||+|||+|.++..++..|..-| +++|.++.+++.|++ .|+. .++.+++.+ +.-..++||+|++.= .
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V-~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKST-TTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEE-EEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 5899999999999999998875422 358999999987655 3442 234444322 111257899999851 1
Q ss_pred Cc-------CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675 336 LD-------VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL 390 (418)
Q Consensus 336 L~-------~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l 390 (418)
+. .+....+.+.++..+.++|+|||.++++.-...-.. -...+...|++..
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~----~~~~~~~~g~~~~ 676 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKM----DEEGLAKLGLKAE 676 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCh----hHHHHHhCCCeEE
Confidence 11 111123456788899999999999987654332222 1455667777644
No 149
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.15 E-value=3.7e-06 Score=86.36 Aligned_cols=101 Identities=24% Similarity=0.252 Sum_probs=76.3
Q ss_pred cCCCCCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCccceEE
Q 037675 260 LGSGGIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNVFDLVH 331 (418)
Q Consensus 260 l~~g~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~sFDlV~ 331 (418)
..++. .++|+|||.|....+.+... ..+. ++|.++.++..+.+ .++ ..+...+....||++++||.|.
T Consensus 108 ~~~~~--~~~~~~~g~~~~~~~i~~f~~~~~~--Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~ 183 (364)
T KOG1269|consen 108 CFPGS--KVLDVGTGVGGPSRYIAVFKKAGVV--GLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVR 183 (364)
T ss_pred Ccccc--cccccCcCcCchhHHHHHhccCCcc--CCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEE
Confidence 45554 79999999999998888764 3333 46777765543322 121 2335578889999999999999
Q ss_pred ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+..+..|..+.. .++.|++||++|||+++..++
T Consensus 184 ~ld~~~~~~~~~---~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 184 FLEVVCHAPDLE---KVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred EEeecccCCcHH---HHHHHHhcccCCCceEEeHHH
Confidence 999999887655 899999999999999866554
No 150
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.15 E-value=6.5e-06 Score=77.49 Aligned_cols=118 Identities=18% Similarity=0.254 Sum_probs=71.3
Q ss_pred eEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHH----HHHHcCCCce--eecccCC-CC--CCCCccceEEecCc
Q 037675 267 IGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSE----FIAARGLFPL--YLSLDHR-FP--FYDNVFDLVHASSG 335 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~----~a~eRGli~~--~~~~~e~-LP--f~d~sFDlV~s~~~ 335 (418)
.+||||||.|.|...+|... ...+ ++|+....+. .+.++++..+ +.+++.. ++ ++++++|.|+...-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~i--GiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFI--GIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEE--EEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEE--EEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 89999999999999999873 5554 4788876554 3445566443 3345444 22 46799999997532
Q ss_pred CcCCCChh------HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHH--cCcEEE
Q 037675 336 LDVGGQPE------KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIER--FGYKKL 390 (418)
Q Consensus 336 L~~~~~~~------~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~--~Gfk~l 390 (418)
= +|.... --..+|.++.|+|||||.+.+.. +.++..+...+.++. -+|+.+
T Consensus 98 D-PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T---D~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 98 D-PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT---DVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE---S-HHHHHHHHHHHHHHSTTEEEE
T ss_pred C-CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe---CCHHHHHHHHHHHHhcCcCeEEc
Confidence 2 222110 11378999999999999985532 223333334445555 367655
No 151
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.14 E-value=1.3e-05 Score=77.76 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=69.6
Q ss_pred CeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCC--------Cc-------------e-----------
Q 037675 266 RIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGL--------FP-------------L----------- 312 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGl--------i~-------------~----------- 312 (418)
.-+|||||..|.+++.+++. +..-| .++|+++..++.|++.-- +. +
T Consensus 60 ~~~LDIGCNsG~lt~~iak~F~~r~i-LGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 60 KQALDIGCNSGFLTLSIAKDFGPRRI-LGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred ceeEeccCCcchhHHHHHHhhcccee-eEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 47999999999999999987 54443 468999999988876311 11 0
Q ss_pred --------------eecccCCCCCCCCccceEEecCc---Cc-CCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 313 --------------YLSLDHRFPFYDNVFDLVHASSG---LD-VGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 313 --------------~~~~~e~LPf~d~sFDlV~s~~~---L~-~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+....+-+-+..+.||+|.|..+ +| .|++ +++..++..+.|.|.|||+|++.--
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD-~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGD-DGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEeccccc-HHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 00000111234567999999533 33 4655 6799999999999999999977643
No 152
>PLN02672 methionine S-methyltransferase
Probab=98.10 E-value=1.9e-05 Score=90.67 Aligned_cols=124 Identities=16% Similarity=0.162 Sum_probs=80.2
Q ss_pred CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----CC------------------Cceeeccc-CCC
Q 037675 266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----GL------------------FPLYLSLD-HRF 320 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----Gl------------------i~~~~~~~-e~L 320 (418)
.+|||+|||+|..+..++++. ..+ +++|+++.+++.|.+. ++ +.++.++. +.+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v--~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKV--YGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEE--EEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 479999999999999998863 344 4589999999876432 11 23344433 222
Q ss_pred CCCCCccceEEec--CcCcC------------C-----------C-------Chh---HHHHHHHHhhccccCCcEEEEE
Q 037675 321 PFYDNVFDLVHAS--SGLDV------------G-----------G-------QPE---KLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 321 Pf~d~sFDlV~s~--~~L~~------------~-----------~-------~~~---~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
+-....||+|+++ ++... - . +.+ -...++.+..++|||||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1112369999996 22110 0 0 011 1257888999999999999887
Q ss_pred ecccCchhHHHHHH-HHHHHcCcEEEE-EEEc
Q 037675 366 NFYCANDEKKSALT-RLIERFGYKKLK-WVVG 395 (418)
Q Consensus 366 ~~~~~~ee~~~~~~-~l~~~~Gfk~l~-W~~~ 395 (418)
.-+.+++. +. +++++.||+.+. |...
T Consensus 278 iG~~q~~~----v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 278 MGGRPGQA----VCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred ECccHHHH----HHHHHHHHCCCCeeEEeeeh
Confidence 65544443 55 578889998865 7663
No 153
>PHA03412 putative methyltransferase; Provisional
Probab=98.09 E-value=1.7e-05 Score=77.13 Aligned_cols=93 Identities=14% Similarity=0.116 Sum_probs=63.8
Q ss_pred CeEEEECCccChHHHHHhhc-----CcEEEEeccCCCHHhHHHHHHcC-CCceeecccCCCCCCCCccceEEecCcCc--
Q 037675 266 RIGFDIGGGSGTFAARMAER-----NVTVITNTLNVDAPYSEFIAARG-LFPLYLSLDHRFPFYDNVFDLVHASSGLD-- 337 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~-----gV~vv~~alD~s~~~l~~a~eRG-li~~~~~~~e~LPf~d~sFDlV~s~~~L~-- 337 (418)
.+|||+|||+|.++..++++ ...+ .++|+++.+++.|++.. -+.+..++....++ +++||+|+++==+.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V--~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREI--VCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEE--EEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 48999999999999888764 2333 35799999999888652 13556666666554 67899999972111
Q ss_pred CCCC-------hhHHHHHHHHhhccccCCcE
Q 037675 338 VGGQ-------PEKLEFLMFDFDRILRAGGL 361 (418)
Q Consensus 338 ~~~~-------~~~le~~L~Ei~RVLRPGG~ 361 (418)
...+ ......++....|.++||+.
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1111 12234688888898888775
No 154
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.07 E-value=2.3e-06 Score=84.55 Aligned_cols=99 Identities=18% Similarity=0.252 Sum_probs=78.1
Q ss_pred cCCCCCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcC
Q 037675 260 LGSGGIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDV 338 (418)
Q Consensus 260 l~~g~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~ 338 (418)
...|. .++|+|||.|-. +.... ..+ ++.|.+...+..++..|...+...++-.+|+.+.+||.+.+..++||
T Consensus 43 ~~~gs--v~~d~gCGngky---~~~~p~~~~--ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihh 115 (293)
T KOG1331|consen 43 QPTGS--VGLDVGCGNGKY---LGVNPLCLI--IGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHH 115 (293)
T ss_pred cCCcc--eeeecccCCccc---CcCCCccee--eecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhh
Confidence 44454 799999999943 22222 233 34798888888777777644666889999999999999999999999
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
+.....-+.++.|+.|+|||||...|.
T Consensus 116 lsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 116 LSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 988888889999999999999976443
No 155
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.06 E-value=6e-06 Score=83.64 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=67.5
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHH---hHHHHHHcCC---CceeecccCCCCCCCCccceEEecCcCcCC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAP---YSEFIAARGL---FPLYLSLDHRFPFYDNVFDLVHASSGLDVG 339 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~---~l~~a~eRGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~ 339 (418)
++|||||||||.++..-++.|..-| .++|.+.- ..+.+...++ +.++.+..|.+..|-...|+|++-+.=...
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V-~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~L 140 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKV-YAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFL 140 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceE-EEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHH
Confidence 5899999999999999888884443 45676642 2245666665 344557777766668899999995432221
Q ss_pred CChhHHHHHHHHhhccccCCcEE
Q 037675 340 GQPEKLEFLMFDFDRILRAGGLF 362 (418)
Q Consensus 340 ~~~~~le~~L~Ei~RVLRPGG~~ 362 (418)
--...+..+|.-=++.|+|||.+
T Consensus 141 l~EsMldsVl~ARdkwL~~~G~i 163 (346)
T KOG1499|consen 141 LYESMLDSVLYARDKWLKEGGLI 163 (346)
T ss_pred HHhhhhhhhhhhhhhccCCCceE
Confidence 11234668888889999999976
No 156
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.05 E-value=9.8e-06 Score=81.31 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=65.0
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCCC-CCCccceEEecCcCcC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFPF-YDNVFDLVHASSGLDV 338 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LPf-~d~sFDlV~s~~~L~~ 338 (418)
.+|||+|||+|.++..+++++..++ ++|.++.+++.|++ .|+ +.++.++++.+.. .++.||+|++.
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~~V~--gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d----- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGMQLT--GIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN----- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEE--EEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC-----
Confidence 5899999999999999999886664 58999999987654 354 2355566655432 34679999975
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.++.++..-+.++..-++|++.++++.-
T Consensus 248 -PPr~G~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 248 -PPRRGIGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred -CCCCCccHHHHHHHHHcCCCeEEEEECC
Confidence 1222333344455555789988877653
No 157
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.03 E-value=1e-05 Score=74.11 Aligned_cols=140 Identities=20% Similarity=0.286 Sum_probs=72.5
Q ss_pred cCCCCCCeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHcCCCceeec----------ccCCCCCCCCc
Q 037675 260 LGSGGIRIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAARGLFPLYLS----------LDHRFPFYDNV 326 (418)
Q Consensus 260 l~~g~~r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eRGli~~~~~----------~~e~LPf~d~s 326 (418)
+..+...+|||+||++|+|+.++.+++ -.+ .++|+.+..- -++. ..+.+ ..+.++-..+.
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v--~avDl~~~~~----~~~~-~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRV--VAVDLGPMDP----LQNV-SFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEE--EEEESSSTGS-----TTE-EBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceE--EEEecccccc----ccce-eeeecccchhhHHHhhhhhccccccC
Confidence 445556799999999999999999987 334 3566643200 0111 11111 11112212378
Q ss_pred cceEEecCcCcCCCC-----hhHHH---HHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccC
Q 037675 327 FDLVHASSGLDVGGQ-----PEKLE---FLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKG 398 (418)
Q Consensus 327 FDlV~s~~~L~~~~~-----~~~le---~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~ 398 (418)
||+|+|..+.....+ ...++ ..+.-+...|||||.+++-.+..... . .+...++. +|+.+++......
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~--~-~~~~~l~~-~F~~v~~~Kp~~s 167 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI--E-ELIYLLKR-CFSKVKIVKPPSS 167 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS--H-HHHHHHHH-HHHHEEEEE-TTS
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH--H-HHHHHHHh-CCeEEEEEECcCC
Confidence 999999764432221 11222 23333446699999987766543221 2 23333333 3666776654444
Q ss_pred CCCccceEEEEE
Q 037675 399 ETGKSEVYLSAV 410 (418)
Q Consensus 399 d~~~~e~~l~Ai 410 (418)
.++.+|.|+.+.
T Consensus 168 r~~s~E~Ylv~~ 179 (181)
T PF01728_consen 168 RSESSEEYLVCR 179 (181)
T ss_dssp BTTCBEEEEESE
T ss_pred CCCccEEEEEEc
Confidence 456678888754
No 158
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.02 E-value=3.8e-05 Score=79.81 Aligned_cols=120 Identities=10% Similarity=0.040 Sum_probs=73.6
Q ss_pred CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCCC----ceeecccCCC----CCCCCccceEEe
Q 037675 266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGLF----PLYLSLDHRF----PFYDNVFDLVHA 332 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGli----~~~~~~~e~L----Pf~d~sFDlV~s 332 (418)
++|||+|||+|.|+..++..+. .++ ++|.++.+++.+++ .|+- .++.+++..+ .-..++||+|++
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~~V~--~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCSQVV--SVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999987666654 343 57999998877654 3441 2344544332 113568999998
Q ss_pred cCc-CcCCC-----ChhHHHHHHHHhhccccCCcEEEEEecc--cCchhHHHHHHHHHHHcCc
Q 037675 333 SSG-LDVGG-----QPEKLEFLMFDFDRILRAGGLFWLDNFY--CANDEKKSALTRLIERFGY 387 (418)
Q Consensus 333 ~~~-L~~~~-----~~~~le~~L~Ei~RVLRPGG~~ii~~~~--~~~ee~~~~~~~l~~~~Gf 387 (418)
.-= +.... ...+.+.++....++|||||+++..... ...++..+.+.+.....|-
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~ 362 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGR 362 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence 621 11110 0023445666788999999998765432 2234455555555665544
No 159
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.00 E-value=1.5e-05 Score=77.09 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=69.8
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-Cceee-cccCC-----CCCCCCccceEEecCcCcC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-FPLYL-SLDHR-----FPFYDNVFDLVHASSGLDV 338 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-i~~~~-~~~e~-----LPf~d~sFDlV~s~~~L~~ 338 (418)
.+|||+|||||.|+..|+++|+.-+ +++|++..|+........ +-.+. .+++. ++..-..||+++++..
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga~~v-~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~--- 152 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGAKEV-YGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI--- 152 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCCCEE-EEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH---
Confidence 4899999999999999999986443 468999988865333322 11111 22322 2211136676665443
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEE-ec-ccCc------------hhH----HHHHHHHHHHcCcEEEEEEEcc
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLD-NF-YCAN------------DEK----KSALTRLIERFGYKKLKWVVGE 396 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~-~~-~~~~------------ee~----~~~~~~l~~~~Gfk~l~W~~~~ 396 (418)
.+|..+.+.|+| |.+++. -| |-.+ +.. -+.+...+...||+.+.+...+
T Consensus 153 --------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 153 --------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred --------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEECC
Confidence 346688999999 766443 22 1111 111 1234456677888877655433
No 160
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.99 E-value=3.5e-05 Score=72.80 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=62.0
Q ss_pred CCCeEEEECCccC----hHHHHHhhc-----C--cEEEEeccCCCHHhHHHHHH--------cCCCc-------------
Q 037675 264 GIRIGFDIGGGSG----TFAARMAER-----N--VTVITNTLNVDAPYSEFIAA--------RGLFP------------- 311 (418)
Q Consensus 264 ~~r~VLDvGCGtG----~faa~La~~-----g--V~vv~~alD~s~~~l~~a~e--------RGli~------------- 311 (418)
..-+|..+||++| ++|..|.+. + +.++ |.|+++..++.|++ +++.+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~--atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~ 108 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRIL--ATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGG 108 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEE--EEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEE--EEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCC
Confidence 3448999999999 566666661 2 4443 57999999987755 12210
Q ss_pred -------------eeecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 312 -------------LYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 312 -------------~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+...+....+.+.+.||+|+|.++|..... +.-+.++..+.+.|+|||++++...
T Consensus 109 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~-~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 109 GYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDP-ETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp CTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-H-HHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred ceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCH-HHHHHHHHHHHHHcCCCCEEEEecC
Confidence 001112223445678999999999998864 4457999999999999999988653
No 161
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.99 E-value=0.0002 Score=76.11 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=92.2
Q ss_pred ccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHH----HcCCCcee--ecccCCCC-CCCCccc
Q 037675 259 ALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIA----ARGLFPLY--LSLDHRFP-FYDNVFD 328 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~----eRGli~~~--~~~~e~LP-f~d~sFD 328 (418)
...+| .+|||++||.|+=+.++++. + -.+ ++.|+++..++... .-|+..+. ..+...++ ..++.||
T Consensus 110 ~~~pg--~~VLD~CAAPGgKTt~la~~l~~~g~l--vA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD 185 (470)
T PRK11933 110 DDNAP--QRVLDMAAAPGSKTTQIAALMNNQGAI--VANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFD 185 (470)
T ss_pred CCCCC--CEEEEeCCCccHHHHHHHHHcCCCCEE--EEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcC
Confidence 33455 48999999999988887765 1 233 35788876665433 33663322 23444442 3456899
Q ss_pred eEE----ecCcCcCCCChhH--------H-------HHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcC-cE
Q 037675 329 LVH----ASSGLDVGGQPEK--------L-------EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFG-YK 388 (418)
Q Consensus 329 lV~----s~~~L~~~~~~~~--------l-------e~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~G-fk 388 (418)
.|+ |++.=..-.+++. + ..+|....+.|||||+++.+.-....+|.++.+..++++.. +.
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~~~~ 265 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAV 265 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCcE
Confidence 999 5532111112211 1 46788899999999999887665556676677777777753 22
Q ss_pred EEE-----EEEcc---------cCCC--CccceEEEEEEEcCC
Q 037675 389 KLK-----WVVGE---------KGET--GKSEVYLSAVLQKPV 415 (418)
Q Consensus 389 ~l~-----W~~~~---------k~d~--~~~e~~l~Ai~qKP~ 415 (418)
.+. |.... +.-+ .+.+.++.|.++|..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFiA~lrk~~ 308 (470)
T PRK11933 266 EFEPLGDLFPGAEKALTEEGFLHVFPQIYDSEGFFVARLRKTA 308 (470)
T ss_pred EeccccccccccccccCCCCeEEECCCCCCCcceeeEEEEecC
Confidence 121 11100 0001 246889999999864
No 162
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.89 E-value=7.2e-05 Score=73.14 Aligned_cols=124 Identities=19% Similarity=0.179 Sum_probs=76.0
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCC
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPF 322 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf 322 (418)
+|-..+++.+|. +||+.|.|+|+++.+|+.. + -.+ .+.|.++...+.|++ .|+ +.+.+.+...--|
T Consensus 31 ~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v--~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 31 YILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHV--YTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEE--EEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred HHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEE--EccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 344456788885 8999999999999999864 2 233 246999988887765 354 3344544433223
Q ss_pred C---CCccceEEecCcCcCCCChhHHHHHHHHhhccc-cCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675 323 Y---DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRIL-RAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 323 ~---d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVL-RPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~ 391 (418)
. ++.||.|+... -.+| .++..+.++| ||||+++.-.|. -++..+ ....++..||..+.
T Consensus 107 ~~~~~~~~DavfLDl-p~Pw-------~~i~~~~~~L~~~gG~i~~fsP~--ieQv~~-~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 107 DEELESDFDAVFLDL-PDPW-------EAIPHAKRALKKPGGRICCFSPC--IEQVQK-TVEALREHGFTDIE 168 (247)
T ss_dssp STT-TTSEEEEEEES-SSGG-------GGHHHHHHHE-EEEEEEEEEESS--HHHHHH-HHHHHHHTTEEEEE
T ss_pred cccccCcccEEEEeC-CCHH-------HHHHHHHHHHhcCCceEEEECCC--HHHHHH-HHHHHHHCCCeeeE
Confidence 2 47899998532 2233 6777999999 999988554332 233333 44556678998764
No 163
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.88 E-value=0.00019 Score=71.09 Aligned_cols=141 Identities=18% Similarity=0.174 Sum_probs=91.6
Q ss_pred CcHHHHHHHHccC-----CCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhH---HHHHHc----C---CCcee
Q 037675 249 KNDFLIDDVLALG-----SGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYS---EFIAAR----G---LFPLY 313 (418)
Q Consensus 249 ~y~~~I~~lL~l~-----~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l---~~a~eR----G---li~~~ 313 (418)
-|..+++++-.+- ....-+||==|||.|+++..++.+|..+.+ .+.|--|+ .++... + +.|+.
T Consensus 36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~g--nE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~ 113 (270)
T PF07942_consen 36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQG--NEFSYFMLLASNFILNHCSQPNQFTIYPFV 113 (270)
T ss_pred HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEE--EEchHHHHHHHHHHHcccCCCCcEEEecce
Confidence 3666666654331 122347999999999999999999988865 47776665 344332 1 11221
Q ss_pred e------------------------------------cccCCCCCCC---CccceEEecCcCcCCCChhHHHHHHHHhhc
Q 037675 314 L------------------------------------SLDHRFPFYD---NVFDLVHASSGLDVGGQPEKLEFLMFDFDR 354 (418)
Q Consensus 314 ~------------------------------------~~~e~LPf~d---~sFDlV~s~~~L~~~~~~~~le~~L~Ei~R 354 (418)
+ |+...+..++ ++||.|++...+.- -.++-.+|..|.+
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT---A~Ni~~Yi~tI~~ 190 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT---AENIIEYIETIEH 190 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec---hHHHHHHHHHHHH
Confidence 1 1222222223 69999998754443 3456799999999
Q ss_pred cccCCcEEEEEec--ccCc----------hhHHHHHHHHHHHcCcEEEEEEE
Q 037675 355 ILRAGGLFWLDNF--YCAN----------DEKKSALTRLIERFGYKKLKWVV 394 (418)
Q Consensus 355 VLRPGG~~ii~~~--~~~~----------ee~~~~~~~l~~~~Gfk~l~W~~ 394 (418)
+|||||++|=-+| +... +-..+++..+++.+||+.++.+.
T Consensus 191 lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 191 LLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred HhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 9999997765565 1111 11247799999999999988666
No 164
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.88 E-value=0.00016 Score=75.55 Aligned_cols=116 Identities=15% Similarity=0.183 Sum_probs=72.8
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCC----CCCCCCccceEEecCc
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHR----FPFYDNVFDLVHASSG 335 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~----LPf~d~sFDlV~s~~~ 335 (418)
.+|||+|||+|.++..|++..-.++ ++|.++.+++.|++ .|+ +.++.+++++ +++.+++||+|+..--
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~~V~--~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAKSVV--GIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP 371 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCCEEE--EEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC
Confidence 4899999999999999998765554 57999999987665 343 2345555433 3345678999996321
Q ss_pred CcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEE
Q 037675 336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWV 393 (418)
Q Consensus 336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~ 393 (418)
-... ...++.++.+ ++|++.++++ |+...+...+ ..+...||+..+..
T Consensus 372 r~G~-----~~~~l~~l~~-l~~~~ivyvs---c~p~tlard~-~~l~~~gy~~~~~~ 419 (431)
T TIGR00479 372 RKGC-----AAEVLRTIIE-LKPERIVYVS---CNPATLARDL-EFLCKEGYGITWVQ 419 (431)
T ss_pred CCCC-----CHHHHHHHHh-cCCCEEEEEc---CCHHHHHHHH-HHHHHCCeeEEEEE
Confidence 1110 1255666554 8999988776 3322222222 33456688755433
No 165
>PRK04148 hypothetical protein; Provisional
Probab=97.87 E-value=9.5e-05 Score=65.99 Aligned_cols=92 Identities=13% Similarity=0.163 Sum_probs=66.1
Q ss_pred CCeEEEECCccCh-HHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCC-CCccceEEecCcCcCCCCh
Q 037675 265 IRIGFDIGGGSGT-FAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFY-DNVFDLVHASSGLDVGGQP 342 (418)
Q Consensus 265 ~r~VLDvGCGtG~-faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~-d~sFDlV~s~~~L~~~~~~ 342 (418)
.+++||||||+|. ++..|++.|..|+ ++|+++..++.+++++. .++.++.-+-++. -+.+|+|++.+ ++
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~Vi--aIDi~~~aV~~a~~~~~-~~v~dDlf~p~~~~y~~a~liysir------pp 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVI--VIDINEKAVEKAKKLGL-NAFVDDLFNPNLEIYKNAKLIYSIR------PP 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEE--EEECCHHHHHHHHHhCC-eEEECcCCCCCHHHHhcCCEEEEeC------CC
Confidence 3689999999995 9999999998886 58999999999999987 7777654433322 35699999855 33
Q ss_pred hHHHHHHHHhhccccCCcEEEEEec
Q 037675 343 EKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 343 ~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.++...+.++.+-+. .-++|...
T Consensus 88 ~el~~~~~~la~~~~--~~~~i~~l 110 (134)
T PRK04148 88 RDLQPFILELAKKIN--VPLIIKPL 110 (134)
T ss_pred HHHHHHHHHHHHHcC--CCEEEEcC
Confidence 445566667766543 44555544
No 166
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.86 E-value=3.2e-05 Score=76.11 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=54.4
Q ss_pred ccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC---CCceeecccCCCCCCCCccceEEecC
Q 037675 259 ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG---LFPLYLSLDHRFPFYDNVFDLVHASS 334 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG---li~~~~~~~e~LPf~d~sFDlV~s~~ 334 (418)
.+..+ .+|||+|||+|.++..|++++..++ ++|+++.|++.++++. -+.+++++...+++++-.+|.|+++-
T Consensus 39 ~~~~~--~~VLEiG~G~G~lt~~L~~~~~~v~--avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 39 GPQPG--DNVLEIGPGLGALTEPLLERAAKVT--AVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANL 113 (272)
T ss_pred CCCCc--CeEEEeCCCccHHHHHHHHhCCcEE--EEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeC
Confidence 34444 4899999999999999999875553 5799999999887752 23566788888887654368888764
No 167
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.82 E-value=5.7e-05 Score=73.72 Aligned_cols=74 Identities=19% Similarity=0.329 Sum_probs=55.7
Q ss_pred ccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCCceeecccCCCCCCCCccceEEecC
Q 037675 259 ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLFPLYLSLDHRFPFYDNVFDLVHASS 334 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~~~e~LPf~d~sFDlV~s~~ 334 (418)
.+.++ .+|||||||+|.++..|++++..++ ++|+++.+++.+.++ +-+.++.+++..+++++ ||.|+++-
T Consensus 26 ~~~~~--~~VLEIG~G~G~lt~~L~~~~~~v~--~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~--~d~Vv~Nl 99 (258)
T PRK14896 26 EDTDG--DPVLEIGPGKGALTDELAKRAKKVY--AIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPE--FNKVVSNL 99 (258)
T ss_pred CCCCc--CeEEEEeCccCHHHHHHHHhCCEEE--EEECCHHHHHHHHHHhccCCCEEEEEeccccCCchh--ceEEEEcC
Confidence 34444 5899999999999999999876554 579999999887764 22345667888887754 89999976
Q ss_pred cCcC
Q 037675 335 GLDV 338 (418)
Q Consensus 335 ~L~~ 338 (418)
-++.
T Consensus 100 Py~i 103 (258)
T PRK14896 100 PYQI 103 (258)
T ss_pred Cccc
Confidence 6543
No 168
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.00019 Score=73.08 Aligned_cols=120 Identities=19% Similarity=0.214 Sum_probs=87.0
Q ss_pred cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCCc--eeec-ccCCCCCCCCccceEEe
Q 037675 260 LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLFP--LYLS-LDHRFPFYDNVFDLVHA 332 (418)
Q Consensus 260 l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli~--~~~~-~~e~LPf~d~sFDlV~s 332 (418)
...|+ +|||==||||++.....=.|..++| .|++..|++-|+.. |+-. ++.. ++..+|+++++||.|.+
T Consensus 195 v~~G~--~vlDPFcGTGgiLiEagl~G~~viG--~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat 270 (347)
T COG1041 195 VKRGE--LVLDPFCGTGGILIEAGLMGARVIG--SDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT 270 (347)
T ss_pred cccCC--EeecCcCCccHHHHhhhhcCceEee--cchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe
Confidence 45564 8999999999999888778999875 69999999876543 3222 2334 89999999999999999
Q ss_pred c--CcCc----CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675 333 S--SGLD----VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 333 ~--~~L~----~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~ 391 (418)
. .-.. ...-..-.+.+|.++.++||+||++++..+... ...++.+||+.+.
T Consensus 271 DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~--------~~~~~~~~f~v~~ 327 (347)
T COG1041 271 DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDP--------RHELEELGFKVLG 327 (347)
T ss_pred cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcc--------hhhHhhcCceEEE
Confidence 4 1111 111123467899999999999999988777322 2225677888765
No 169
>PLN02476 O-methyltransferase
Probab=97.81 E-value=7.3e-05 Score=74.30 Aligned_cols=108 Identities=12% Similarity=0.136 Sum_probs=72.0
Q ss_pred HHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC---Cceeeccc-CCCCC
Q 037675 254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLD-HRFPF 322 (418)
Q Consensus 254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~-e~LPf 322 (418)
+..++.+.. .++|||+|+|+|..+..|+.. +-.+ +++|.++...+.|++ .|+ +.+..+++ +-|+-
T Consensus 110 L~~L~~~~~--ak~VLEIGT~tGySal~lA~al~~~G~V--~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~ 185 (278)
T PLN02476 110 LAMLVQILG--AERCIEVGVYTGYSSLAVALVLPESGCL--VACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKS 185 (278)
T ss_pred HHHHHHhcC--CCeEEEecCCCCHHHHHHHHhCCCCCEE--EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence 333444443 359999999999999988863 2223 347888887776643 455 33444533 22221
Q ss_pred -----CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc
Q 037675 323 -----YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN 371 (418)
Q Consensus 323 -----~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ 371 (418)
.+++||+|+... ++.....++..+.+.|||||.+++++-.+.+
T Consensus 186 l~~~~~~~~FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G 233 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHG 233 (278)
T ss_pred HHhcccCCCCCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCC
Confidence 246899999643 2345568899999999999999888775544
No 170
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.81 E-value=0.00013 Score=69.96 Aligned_cols=119 Identities=15% Similarity=0.224 Sum_probs=80.8
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCC---CCCccceEEecCcCcCCCCh
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPF---YDNVFDLVHASSGLDVGGQP 342 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf---~d~sFDlV~s~~~L~~~~~~ 342 (418)
-++|||||=....+.. ..+..-| ..+|+++. +. .+...+....|. +++.||+|.++.+|...+++
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdv-t~IDLns~------~~---~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDV-TRIDLNSQ------HP---GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred ceEEeecccCCCCccc--ccCceee-EEeecCCC------CC---CceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 3899999986554332 2221111 34677541 11 223334444554 36799999999999999999
Q ss_pred hHHHHHHHHhhccccCCcE-----EEEEec-ccCc---hhHHHHHHHHHHHcCcEEEEEEEcc
Q 037675 343 EKLEFLMFDFDRILRAGGL-----FWLDNF-YCAN---DEKKSALTRLIERFGYKKLKWVVGE 396 (418)
Q Consensus 343 ~~le~~L~Ei~RVLRPGG~-----~ii~~~-~~~~---ee~~~~~~~l~~~~Gfk~l~W~~~~ 396 (418)
..-...+....+.|||+|. ++|.-| -|.. .-..+.|..+++.+||..++-+...
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSK 183 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecC
Confidence 8888999999999999999 766655 2321 1233568999999999998754433
No 171
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.75 E-value=5.6e-05 Score=73.02 Aligned_cols=99 Identities=20% Similarity=0.188 Sum_probs=64.3
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHH----hHHHHHHcCCCce--eecccCCC-C--CCCCccceEEecCcC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAP----YSEFIAARGLFPL--YLSLDHRF-P--FYDNVFDLVHASSGL 336 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~----~l~~a~eRGli~~--~~~~~e~L-P--f~d~sFDlV~s~~~L 336 (418)
..+||||||.|.|...+|+++...--+++++... .++.+.+.|+..+ +..++..+ + +++++.|-|+...-=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 3799999999999999999863322234677654 3455666777233 33343322 2 356699999975422
Q ss_pred cCCCCh------hHHHHHHHHhhccccCCcEEEEE
Q 037675 337 DVGGQP------EKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 337 ~~~~~~------~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
+|... ---..++.++.|+|||||.+.+.
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 23211 11237899999999999999654
No 172
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.74 E-value=0.0005 Score=70.87 Aligned_cols=111 Identities=13% Similarity=0.126 Sum_probs=69.2
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCC-CCCCccceEEecCcCcC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFP-FYDNVFDLVHASSGLDV 338 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LP-f~d~sFDlV~s~~~L~~ 338 (418)
++|||+|||+|.++..++.++-.++ ++|.++.+++.|++ .++ +.++.++.+.+. -..+.||+|+..=
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~--~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DP---- 308 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLT--GIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNP---- 308 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEE--EEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECC----
Confidence 5899999999999999998876654 57999988876654 343 234445544332 1124699998751
Q ss_pred CCChhH-HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675 339 GGQPEK-LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 339 ~~~~~~-le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~ 391 (418)
++.+ .+.++..+. -++|++.++++. +...+...+..+ .||+..+
T Consensus 309 --Pr~G~~~~~l~~l~-~~~p~~ivyvsc---~p~TlaRDl~~L---~gy~l~~ 353 (374)
T TIGR02085 309 --PRRGIGKELCDYLS-QMAPKFILYSSC---NAQTMAKDIAEL---SGYQIER 353 (374)
T ss_pred --CCCCCcHHHHHHHH-hcCCCeEEEEEe---CHHHHHHHHHHh---cCceEEE
Confidence 1111 124444443 489999998874 333333334444 5787554
No 173
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.74 E-value=0.00018 Score=69.77 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=51.0
Q ss_pred CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCCccc---eEEecCcCc
Q 037675 265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDNVFD---LVHASSGLD 337 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~sFD---lV~s~~~L~ 337 (418)
..+|||+|||+|.++..|++++..++ ++|.++.+++.+.++- -+..+.+++..+|++ .|| +|+++--++
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~~v~--~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAKKVT--AIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLPYN 105 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCcEE--EEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCChh
Confidence 35899999999999999999875543 4799999998876641 234556788888775 566 777654433
No 174
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.73 E-value=0.00018 Score=68.05 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=59.6
Q ss_pred CeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHH----cCC--CceeecccCC-CCCCCCccceEEecCcCc
Q 037675 266 RIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHR-FPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~-LPf~d~sFDlV~s~~~L~ 337 (418)
.+|||+|||+|.++..++.++ ..+ +++|.++..++.+++ .|+ +.++.+++.. ++...+.||+|++.==+.
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V--~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGA--TLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEE--EEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 489999999999998765565 344 347888887765544 243 2334444332 333355799999853221
Q ss_pred CCCChhHHHHHHHHhh--ccccCCcEEEEEecc
Q 037675 338 VGGQPEKLEFLMFDFD--RILRAGGLFWLDNFY 368 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~--RVLRPGG~~ii~~~~ 368 (418)
. .-.+.++..+. .+|+|+|.+++++..
T Consensus 133 ~----g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 133 K----GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred C----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 1 11223444343 358999999888664
No 175
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.70 E-value=0.00044 Score=68.98 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=89.9
Q ss_pred CCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHH----HHHHcCCCce---eecccCC---CCCCCCccc
Q 037675 262 SGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSE----FIAARGLFPL---YLSLDHR---FPFYDNVFD 328 (418)
Q Consensus 262 ~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~----~a~eRGli~~---~~~~~e~---LPf~d~sFD 328 (418)
.|..-+||||.||.|..-.-..+. . +.-+ .-.|.++.-++ .++++|+-.. ..+++-+ +.--+-..|
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i-~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSI-LLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceE-EEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 354558999999999865444433 2 2221 12788886664 5788998433 3444322 222244579
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc--h-------------------hHHHHHHHHHHHcCc
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--D-------------------EKKSALTRLIERFGY 387 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--e-------------------e~~~~~~~l~~~~Gf 387 (418)
+++.++.+..+.+.+.+...+.-+.+++.|||++|.+.--|+. + ..++++..+++.+||
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF 291 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGF 291 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCC
Confidence 9999999999999888888999999999999999888732221 1 123678899999999
Q ss_pred EEEE
Q 037675 388 KKLK 391 (418)
Q Consensus 388 k~l~ 391 (418)
+++.
T Consensus 292 ~K~~ 295 (311)
T PF12147_consen 292 EKID 295 (311)
T ss_pred chhh
Confidence 9885
No 176
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.69 E-value=0.00035 Score=69.17 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=68.6
Q ss_pred eEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHHHHc-------CCCceee-----cccCCCCCCCCccceEEe
Q 037675 267 IGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFIAAR-------GLFPLYL-----SLDHRFPFYDNVFDLVHA 332 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a~eR-------Gli~~~~-----~~~e~LPf~d~sFDlV~s 332 (418)
.+||+|||+|..+..|+.. + +++ +|+|.|+..+..|.+. |.+.+.+ ++....|...+.+|+++|
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v--~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTV--TAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceE--EEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 7999999999999888765 3 443 5789999888776553 3344442 245566677899999999
Q ss_pred c--CcCcC---------------------CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 333 S--SGLDV---------------------GGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 333 ~--~~L~~---------------------~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+ ++.+. ..-.+.+-.++.-.-|.|+|||.+++.--
T Consensus 229 NPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 229 NPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred CCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 7 33321 01112344566778899999999988654
No 177
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.68 E-value=0.00015 Score=69.75 Aligned_cols=108 Identities=24% Similarity=0.248 Sum_probs=74.3
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHH----cCCCc---eee-c-ccCCC
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAA----RGLFP---LYL-S-LDHRF 320 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~e----RGli~---~~~-~-~~e~L 320 (418)
++..++.+.. .++||+||.+.|..+..|+.. + -.++ ++|.++++.+.|++ -|+-. .+. + ..+.+
T Consensus 50 ~L~~L~~~~~--~k~iLEiGT~~GySal~mA~~l~~~g~l~--tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l 125 (219)
T COG4122 50 LLRLLARLSG--PKRILEIGTAIGYSALWMALALPDDGRLT--TIERDEERAEIARENLAEAGVDDRIELLLGGDALDVL 125 (219)
T ss_pred HHHHHHHhcC--CceEEEeecccCHHHHHHHhhCCCCCeEE--EEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHH
Confidence 4455555553 359999999999999888864 2 2332 47999998887765 35533 334 2 22223
Q ss_pred C-CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675 321 P-FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA 370 (418)
Q Consensus 321 P-f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~ 370 (418)
. +..++||+|+... . +.....++.+..+.|||||.++++...+.
T Consensus 126 ~~~~~~~fDliFIDa----d--K~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 126 SRLLDGSFDLVFIDA----D--KADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HhccCCCccEEEEeC----C--hhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 3 5689999999633 2 23345899999999999999988876554
No 178
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.67 E-value=0.00012 Score=77.25 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=58.6
Q ss_pred CeEEEECCccChHHHHHhhcC------cEEEEeccCCCHHhHH----HHHHcC---CCceeecccCCCCCCCCccceEEe
Q 037675 266 RIGFDIGGGSGTFAARMAERN------VTVITNTLNVDAPYSE----FIAARG---LFPLYLSLDHRFPFYDNVFDLVHA 332 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~g------V~vv~~alD~s~~~l~----~a~eRG---li~~~~~~~e~LPf~d~sFDlV~s 332 (418)
..|||||||+|-++...++.+ +.| .+++.++.... .+.+.| .+.+++++.+.+..+. .+|+|++
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~V--yAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVS 264 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKV--YAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVS 264 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEE--EEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEE--EEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEE
Confidence 479999999998875444332 444 45677654332 224443 4667778998887644 8999999
Q ss_pred cCcCcCCCChhHHHHHHHHhhccccCCcEE
Q 037675 333 SSGLDVGGQPEKLEFLMFDFDRILRAGGLF 362 (418)
Q Consensus 333 ~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ 362 (418)
-..= .+.+.+.+...|.-.+|.|||||.+
T Consensus 265 ElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~ 293 (448)
T PF05185_consen 265 ELLG-SFGDNELSPECLDAADRFLKPDGIM 293 (448)
T ss_dssp ---B-TTBTTTSHHHHHHHGGGGEEEEEEE
T ss_pred eccC-CccccccCHHHHHHHHhhcCCCCEE
Confidence 5321 2233345567899999999999976
No 179
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.66 E-value=0.00014 Score=69.08 Aligned_cols=98 Identities=21% Similarity=0.244 Sum_probs=67.8
Q ss_pred CCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC---CceeecccC-CCC-----CCCCccc
Q 037675 265 IRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDH-RFP-----FYDNVFD 328 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e-~LP-----f~d~sFD 328 (418)
.++||+||+++|..+..|++. +-.++ ++|.++...+.|++ .|+ +.++.+++. -++ ...+.||
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~--tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKIT--TIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEE--EEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEE--EecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 359999999999999999864 34443 46888888877644 354 344555332 122 1246899
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA 370 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~ 370 (418)
+|+...- +.....++..+.+.|||||.+++++..+.
T Consensus 124 ~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~ 159 (205)
T PF01596_consen 124 FVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWR 159 (205)
T ss_dssp EEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred EEEEccc------ccchhhHHHHHhhhccCCeEEEEcccccc
Confidence 9997542 23445788899999999999988886554
No 180
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.61 E-value=0.0009 Score=64.51 Aligned_cols=146 Identities=14% Similarity=0.247 Sum_probs=86.5
Q ss_pred ccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCH----HhHHHHHHc-CCCceeecccCCCCC--CCCccceE
Q 037675 259 ALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDA----PYSEFIAAR-GLFPLYLSLDHRFPF--YDNVFDLV 330 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~----~~l~~a~eR-Gli~~~~~~~e~LPf--~d~sFDlV 330 (418)
.+++|. +||-+|+.+|+...++++- +-..+..+++.++ ..++.|.+| +++|.+.+.....-| --..+|+|
T Consensus 70 ~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 70 PIKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp S--TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred CCCCCC--EEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEE
Confidence 355664 8999999999999888875 4222224568886 455678887 456666653322211 23489999
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc------CchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccc
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC------ANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSE 404 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~------~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e 404 (418)
++.-. +++..+.++.....-||+||.++|.--.. ..++.-+.-..-++..||+.+.-...+- -.+++
T Consensus 148 ~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LeP--y~~dH 220 (229)
T PF01269_consen 148 FQDVA-----QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEP--YERDH 220 (229)
T ss_dssp EEE-S-----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TT--TSTTE
T ss_pred EecCC-----ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCC--CCCCc
Confidence 98432 34556788999999999999998764321 1122212223334555888775333222 25788
Q ss_pred eEEEEEEEc
Q 037675 405 VYLSAVLQK 413 (418)
Q Consensus 405 ~~l~Ai~qK 413 (418)
..+.+.++|
T Consensus 221 ~~vv~~y~~ 229 (229)
T PF01269_consen 221 AMVVGRYRK 229 (229)
T ss_dssp EEEEEEE--
T ss_pred EEEEEEecC
Confidence 888888876
No 181
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.57 E-value=0.00027 Score=75.67 Aligned_cols=100 Identities=12% Similarity=-0.011 Sum_probs=65.2
Q ss_pred CCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhH----HHHHHcCCCcee--ecccCCC--CCCCCccceEEec
Q 037675 264 GIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYS----EFIAARGLFPLY--LSLDHRF--PFYDNVFDLVHAS 333 (418)
Q Consensus 264 ~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l----~~a~eRGli~~~--~~~~e~L--Pf~d~sFDlV~s~ 333 (418)
....+||||||.|.|...++..+ ...+ ++|+...-+ ..+.++|+..+. .++++.+ -|+++++|.|+..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~i--GiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFI--GVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEE--EEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 34689999999999999999885 3443 468776533 344556664332 2333211 1678999999985
Q ss_pred CcCcCCCC-----hhHHHHHHHHhhccccCCcEEEEE
Q 037675 334 SGLDVGGQ-----PEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 334 ~~L~~~~~-----~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
.-=-|... +---..++.++.++|||||.+.+.
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 43222111 111137899999999999998554
No 182
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.57 E-value=0.00081 Score=66.17 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=61.0
Q ss_pred CccceEEecCcCcC-CCChhHHHHHHHHhhccccCCcEEEEEec-----ccCch-------hHHHHHHHHHHHcCcEEEE
Q 037675 325 NVFDLVHASSGLDV-GGQPEKLEFLMFDFDRILRAGGLFWLDNF-----YCAND-------EKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 325 ~sFDlV~s~~~L~~-~~~~~~le~~L~Ei~RVLRPGG~~ii~~~-----~~~~e-------e~~~~~~~l~~~~Gfk~l~ 391 (418)
..||+|++..|+.. -.+.+....++..+.+.|||||.|++... +..+. -.++.+.+.++..||....
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~ 236 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIED 236 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEE
T ss_pred cchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEe
Confidence 36999999999985 44677788999999999999999988764 22221 1245688889999999888
Q ss_pred EEEcccCCCCccceEEEEEEEc
Q 037675 392 WVVGEKGETGKSEVYLSAVLQK 413 (418)
Q Consensus 392 W~~~~k~d~~~~e~~l~Ai~qK 413 (418)
+.. ......-+.++.++.||
T Consensus 237 ~~~--~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 237 LEK--QSKVSDYEGMFFLVARK 256 (256)
T ss_dssp EEG---TTTB---EEEEEEEEE
T ss_pred ccc--ccCcCCCCcEEEEEEeC
Confidence 872 11112235567777777
No 183
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.48 E-value=0.0003 Score=64.75 Aligned_cols=99 Identities=21% Similarity=0.253 Sum_probs=57.4
Q ss_pred CCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHH----HHHcC-----CCcee-ecccCCC--C-CCCCccce
Q 037675 265 IRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEF----IAARG-----LFPLY-LSLDHRF--P-FYDNVFDL 329 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~----a~eRG-----li~~~-~~~~e~L--P-f~d~sFDl 329 (418)
..+||++|||+|..+..++.. ...++. .|..+ .++. +...+ -+.+. .+|.+.. + ...+.||+
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~--TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVL--TDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEE--EE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CceEEEECCccchhHHHHHhccCCceEEE--eccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 359999999999888888887 344442 35544 3332 22222 11121 2454433 1 23568999
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC 369 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~ 369 (418)
|+++.|+... ...+.++.=+.+.|+|+|.+++.....
T Consensus 123 IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccchH---HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999998754 456688999999999999988877654
No 184
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.45 E-value=0.00074 Score=68.68 Aligned_cols=94 Identities=18% Similarity=0.248 Sum_probs=69.2
Q ss_pred CCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc---CCCceee-cccCCCCCCCCccceEEecCcCc
Q 037675 264 GIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR---GLFPLYL-SLDHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 264 ~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR---Gli~~~~-~~~e~LPf~d~sFDlV~s~~~L~ 337 (418)
.+...+|+|.|.|..+..+..+- +.. +|.+.+.+-.++.. |+ ..+. +..+..|-. |+|++-+++|
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~----infdlp~v~~~a~~~~~gV-~~v~gdmfq~~P~~----daI~mkWiLh 247 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKG----INFDLPFVLAAAPYLAPGV-EHVAGDMFQDTPKG----DAIWMKWILH 247 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCce----eecCHHHHHhhhhhhcCCc-ceecccccccCCCc----CeEEEEeecc
Confidence 35789999999999998888763 444 47776666443332 32 2233 344555543 4999999999
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+|.|. +..++|...+.-|+|||.+++-+.
T Consensus 248 dwtDe-dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 248 DWTDE-DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred cCChH-HHHHHHHHHHHhCCCCCEEEEEec
Confidence 99875 578999999999999999988765
No 185
>PLN02823 spermine synthase
Probab=97.44 E-value=0.00057 Score=69.70 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=64.8
Q ss_pred CCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCC----------CceeecccCC-CCCCCCccceEE
Q 037675 264 GIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGL----------FPLYLSLDHR-FPFYDNVFDLVH 331 (418)
Q Consensus 264 ~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGl----------i~~~~~~~e~-LPf~d~sFDlV~ 331 (418)
..++||.+|+|.|..+..+.+. ++.-+ ..+|+++.+++.+++.-. +.++.+++.. +...++.||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v-~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKV-VMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeE-EEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3579999999999999988875 44322 347999999998876421 1233333222 233467899999
Q ss_pred ecCcCcCCC--Chh--HHHHHHH-HhhccccCCcEEEEE
Q 037675 332 ASSGLDVGG--QPE--KLEFLMF-DFDRILRAGGLFWLD 365 (418)
Q Consensus 332 s~~~L~~~~--~~~--~le~~L~-Ei~RVLRPGG~~ii~ 365 (418)
... ...+. ... --..++. .+.+.|+|||.+++-
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 863 22221 000 0125666 799999999988664
No 186
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.39 E-value=0.00036 Score=69.86 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=50.7
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----C---CCceeecccCCCCCCCCccceEEecCcCc
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----G---LFPLYLSLDHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----G---li~~~~~~~e~LPf~d~sFDlV~s~~~L~ 337 (418)
.+|||||||+|.++..|++++..++ ++|+++.+++.++++ + -+.++.+++...++ ..||.|+++--.+
T Consensus 38 ~~VLEIG~G~G~LT~~Ll~~~~~V~--avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNlPY~ 112 (294)
T PTZ00338 38 DTVLEIGPGTGNLTEKLLQLAKKVI--AIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANVPYQ 112 (294)
T ss_pred CEEEEecCchHHHHHHHHHhCCcEE--EEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecCCcc
Confidence 4899999999999999999876554 579999999877653 2 23456677766654 3689999865444
No 187
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.31 E-value=0.0016 Score=64.59 Aligned_cols=113 Identities=21% Similarity=0.245 Sum_probs=73.2
Q ss_pred HHHHHHccCCCCCCeEEEECCccC----hHHHHHhhcCc-----EEEEeccCCCHHhHHHHHH---------cCCCce--
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSG----TFAARMAERNV-----TVITNTLNVDAPYSEFIAA---------RGLFPL-- 312 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG----~faa~La~~gV-----~vv~~alD~s~~~l~~a~e---------RGli~~-- 312 (418)
.+++++....+..=+|.-+||+|| +.|..|.+... .+--.|.|++...++.|+. +++.+.
T Consensus 85 v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~ 164 (268)
T COG1352 85 VLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELL 164 (268)
T ss_pred HHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHH
Confidence 344444333333348999999999 56666666531 1222468999888876543 232100
Q ss_pred ---e----------------------ecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 313 ---Y----------------------LSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 313 ---~----------------------~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+ ++.... ++..+.||+|+|-++|...+.+. -+.++..++..|+|||++++.+.
T Consensus 165 ~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~-~~~~~~fD~IfCRNVLIYFd~~~-q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 165 RRYFERGGDGSYRVKEELRKMVRFRRHNLLDD-SPFLGKFDLIFCRNVLIYFDEET-QERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred hhhEeecCCCcEEEChHHhcccEEeecCCCCC-ccccCCCCEEEEcceEEeeCHHH-HHHHHHHHHHHhCCCCEEEEccC
Confidence 0 001111 22667799999999999886544 46899999999999999988653
No 188
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.0077 Score=56.63 Aligned_cols=141 Identities=16% Similarity=0.209 Sum_probs=80.4
Q ss_pred ccccccCCcHHHHHHHH----ccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHH----HHHHcCC-
Q 037675 242 RYIKARGKNDFLIDDVL----ALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSE----FIAARGL- 309 (418)
Q Consensus 242 ~W~~~~~~y~~~I~~lL----~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~----~a~eRGl- 309 (418)
.|..|...+-.++|.+- .++.-....+||||||+|-.+..|++. + +..+ +.|+++...+ -|+..+.
T Consensus 17 dVYEPaEDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~l--atDiNp~A~~~Tl~TA~~n~~~ 94 (209)
T KOG3191|consen 17 DVYEPAEDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYL--ATDINPEALEATLETARCNRVH 94 (209)
T ss_pred hccCccchhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEE--EecCCHHHHHHHHHHHHhcCCc
Confidence 55566554333444331 133323558999999999999999886 3 4444 4687765554 3444433
Q ss_pred Cceeecc-cCCCCCCCCccceEEecC--cCcC------------CC----ChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675 310 FPLYLSL-DHRFPFYDNVFDLVHASS--GLDV------------GG----QPEKLEFLMFDFDRILRAGGLFWLDNFYCA 370 (418)
Q Consensus 310 i~~~~~~-~e~LPf~d~sFDlV~s~~--~L~~------------~~----~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~ 370 (418)
+..+..+ ...+ ..++.|+++-+- +... |. -..-+.+++..+..+|.|.|.|++.....+
T Consensus 95 ~~~V~tdl~~~l--~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 95 IDVVRTDLLSGL--RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred cceeehhHHhhh--ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 2333321 1111 226677666542 1110 11 112245778888899999999988765444
Q ss_pred chhHHHHHHHHHHHcCcEE
Q 037675 371 NDEKKSALTRLIERFGYKK 389 (418)
Q Consensus 371 ~ee~~~~~~~l~~~~Gfk~ 389 (418)
..+ ++..+++..||..
T Consensus 173 ~p~---ei~k~l~~~g~~~ 188 (209)
T KOG3191|consen 173 KPK---EILKILEKKGYGV 188 (209)
T ss_pred CHH---HHHHHHhhcccce
Confidence 332 3555788888864
No 189
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0013 Score=62.04 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=45.5
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc---C--CCceeecccCCCCCCCCccceEEec
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR---G--LFPLYLSLDHRFPFYDNVFDLVHAS 333 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR---G--li~~~~~~~e~LPf~d~sFDlV~s~ 333 (418)
++|+|+|||||.++...+-.|..-| .++|+++..++.+++. + -+.++.++..++ +..||.|+.+
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V-~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimN 115 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRV-LAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMN 115 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEE-EEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEEC
Confidence 4799999999999988887874433 3578888888776543 2 234555555544 5678888886
No 190
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.19 E-value=0.0012 Score=64.59 Aligned_cols=98 Identities=13% Similarity=0.194 Sum_probs=65.7
Q ss_pred CCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC---Cceeeccc-CCCCC------CCCcc
Q 037675 265 IRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLD-HRFPF------YDNVF 327 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~-e~LPf------~d~sF 327 (418)
.++||+||+++|..+..|+.. +-.++ ++|.++...+.|++ .|+ +.+..+++ +-||- ..++|
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~--tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKIL--AMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEE--EEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 458999999999988888753 22333 46888877766543 454 33444532 22221 24689
Q ss_pred ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675 328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA 370 (418)
Q Consensus 328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~ 370 (418)
|+|+...- +.....++..+.+.|||||.+++++..+.
T Consensus 158 D~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~~ 194 (247)
T PLN02589 158 DFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLWN 194 (247)
T ss_pred cEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCCC
Confidence 99996432 33344778888899999999988876554
No 191
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0015 Score=62.88 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=75.2
Q ss_pred ccccccCCcHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCc--EEEEeccCCCHHhHHHHHHcCC------Ccee
Q 037675 242 RYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNV--TVITNTLNVDAPYSEFIAARGL------FPLY 313 (418)
Q Consensus 242 ~W~~~~~~y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV--~vv~~alD~s~~~l~~a~eRGl------i~~~ 313 (418)
+|..+ ++....+.+..+. ++||.||-|.|.....+.+++. ..+ ++.++..++..++-|- +++.
T Consensus 85 ~WEtp---iMha~A~ai~tkg---grvLnVGFGMgIidT~iQe~~p~~H~I---iE~hp~V~krmr~~gw~ek~nViil~ 155 (271)
T KOG1709|consen 85 RWETP---IMHALAEAISTKG---GRVLNVGFGMGIIDTFIQEAPPDEHWI---IEAHPDVLKRMRDWGWREKENVIILE 155 (271)
T ss_pred hhhhH---HHHHHHHHHhhCC---ceEEEeccchHHHHHHHhhcCCcceEE---EecCHHHHHHHHhcccccccceEEEe
Confidence 56554 5666666555443 4899999999999988888752 222 4889988888777553 2222
Q ss_pred ecccCCCC-CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEE
Q 037675 314 LSLDHRFP-FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLF 362 (418)
Q Consensus 314 ~~~~e~LP-f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ 362 (418)
--|...+| .+|+.||.|+-..--.+ .+++..+.+-+.|.|||||.|
T Consensus 156 g~WeDvl~~L~d~~FDGI~yDTy~e~---yEdl~~~hqh~~rLLkP~gv~ 202 (271)
T KOG1709|consen 156 GRWEDVLNTLPDKHFDGIYYDTYSEL---YEDLRHFHQHVVRLLKPEGVF 202 (271)
T ss_pred cchHhhhccccccCcceeEeechhhH---HHHHHHHHHHHhhhcCCCceE
Confidence 22444444 46899999986432222 366778889999999999987
No 192
>PRK00536 speE spermidine synthase; Provisional
Probab=97.18 E-value=0.0049 Score=60.91 Aligned_cols=91 Identities=13% Similarity=0.060 Sum_probs=63.4
Q ss_pred CCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC------C----CceeecccCCCCCCCCccceEE
Q 037675 262 SGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG------L----FPLYLSLDHRFPFYDNVFDLVH 331 (418)
Q Consensus 262 ~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG------l----i~~~~~~~e~LPf~d~sFDlV~ 331 (418)
.+..++||=+|.|-|+.+..+.+..-.++ -+|+++.+++.+++-- + +.++. ... .-..++||+|+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~--mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVII 144 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVD--FVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLII 144 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeE--EEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEE
Confidence 45568999999999999999998853332 2699999998877721 1 11111 111 11247899999
Q ss_pred ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
....+. +.+...+.|+|+|||.++.-
T Consensus 145 vDs~~~--------~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 145 CLQEPD--------IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EcCCCC--------hHHHHHHHHhcCCCcEEEEC
Confidence 875421 26678999999999998773
No 193
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.008 Score=57.35 Aligned_cols=138 Identities=18% Similarity=0.193 Sum_probs=72.3
Q ss_pred CeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHcCCCceeecccCCC--------CCCCCccceEEecC
Q 037675 266 RIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF--------PFYDNVFDLVHASS 334 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L--------Pf~d~sFDlV~s~~ 334 (418)
..|+|+|+-.|+|+..++++ + ..++++.++...+.- | +.++.++...- -+....+|+|.+..
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~------~-V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ 119 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP------G-VIFLQGDITDEDTLEKLLEALGGAPVDVVLSDM 119 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC------C-ceEEeeeccCccHHHHHHHHcCCCCcceEEecC
Confidence 48999999999999999887 3 334433322221111 1 12222222111 12234479999743
Q ss_pred cC--------cCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceE
Q 037675 335 GL--------DVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVY 406 (418)
Q Consensus 335 ~L--------~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~ 406 (418)
.= +|...-.--+.++.=..++|+|||.|++-.|.....+ + +...++++ |+.++-....-..+...|.|
T Consensus 120 ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~--~-~l~~~~~~-F~~v~~~KP~aSR~~S~E~y 195 (205)
T COG0293 120 APNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFE--D-LLKALRRL-FRKVKIFKPKASRKRSREIY 195 (205)
T ss_pred CCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHH--H-HHHHHHHh-hceeEEecCccccCCCceEE
Confidence 22 1211111122333444569999999988888655433 2 23333332 66665433222222344888
Q ss_pred EEEEEEcC
Q 037675 407 LSAVLQKP 414 (418)
Q Consensus 407 l~Ai~qKP 414 (418)
+.+..-|+
T Consensus 196 ~v~~~~~~ 203 (205)
T COG0293 196 LVAKGFKG 203 (205)
T ss_pred EEEecccc
Confidence 88776554
No 194
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.14 E-value=0.00089 Score=62.10 Aligned_cols=121 Identities=18% Similarity=0.242 Sum_probs=71.4
Q ss_pred cCCCCCCeEEEECCccChHHHHHh--hcCcE---------EEEeccCCCHHhHHHHHH----cCC---CceeecccCCCC
Q 037675 260 LGSGGIRIGFDIGGGSGTFAARMA--ERNVT---------VITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFP 321 (418)
Q Consensus 260 l~~g~~r~VLDvGCGtG~faa~La--~~gV~---------vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LP 321 (418)
+.+| ..|||-=||+|++....+ ..++. + .+.|+++.+++.+++ .|+ +.+...++.++|
T Consensus 26 ~~~~--~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~--~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 26 WRPG--DVVLDPFCGSGTILIEAALMGANIPPLNDINELKI--IGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP 101 (179)
T ss_dssp --TT--S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--E--EEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG
T ss_pred CCCC--CEEeecCCCCCHHHHHHHHHhhCcccccccccccE--EecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc
Confidence 4444 489999999999884443 33444 3 357999998876654 244 233446888999
Q ss_pred CCCCccceEEecCcCcC-CCC----hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEE
Q 037675 322 FYDNVFDLVHASSGLDV-GGQ----PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKW 392 (418)
Q Consensus 322 f~d~sFDlV~s~~~L~~-~~~----~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W 392 (418)
+.++++|.|++.-=+-. ... ..-...++.++.|+|+|...+++... .+ +...++..++++.+-
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~----~~----~~~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN----RE----LEKALGLKGWRKRKL 169 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC----CC----HHHHHTSTTSEEEEE
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC----HH----HHHHhcchhhceEEE
Confidence 88999999999621111 011 12234678999999999444444322 12 444555657776653
No 195
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.13 E-value=0.002 Score=60.36 Aligned_cols=98 Identities=14% Similarity=0.051 Sum_probs=58.3
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCC---ceeecccCC-CC-C-CC-CccceEEecC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLF---PLYLSLDHR-FP-F-YD-NVFDLVHASS 334 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli---~~~~~~~e~-LP-f-~d-~sFDlV~s~~ 334 (418)
.+|||++||+|.++..++.+|...+ +.+|.++..++.+++ .++. .++.+++.+ +. + .. ..||+|+..=
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v-~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVA-FLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEE-EEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 4899999999999999999986322 357888877765543 2331 234444422 22 1 12 2478888642
Q ss_pred cCcCCCChhHHHHHHHHh--hccccCCcEEEEEecc
Q 037675 335 GLDVGGQPEKLEFLMFDF--DRILRAGGLFWLDNFY 368 (418)
Q Consensus 335 ~L~~~~~~~~le~~L~Ei--~RVLRPGG~~ii~~~~ 368 (418)
=+.. . ..+.++..+ ..+|+++|.+++.+..
T Consensus 130 Py~~-~---~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 130 PFFN-G---ALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CCCC-C---cHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 2211 1 112333322 4589999988887653
No 196
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.05 E-value=0.0063 Score=60.21 Aligned_cols=119 Identities=17% Similarity=0.020 Sum_probs=70.5
Q ss_pred CCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH--cCCCceee----c--ccCCCCCCCCccceEEec
Q 037675 264 GIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA--RGLFPLYL----S--LDHRFPFYDNVFDLVHAS 333 (418)
Q Consensus 264 ~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e--RGli~~~~----~--~~e~LPf~d~sFDlV~s~ 333 (418)
..++|||+|+|.|+-.-+..+. .+.-+ +.+|.|+.|+++++. +....... . ..+..++.. .|+|+++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~-~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEY-TCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPP--DDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceee-eeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCC--CcEEEEe
Confidence 3468999999999765554443 22222 347999999986543 22211111 0 112233333 3999999
Q ss_pred CcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC-chhHHHHHHHHHHHcCcE
Q 037675 334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA-NDEKKSALTRLIERFGYK 388 (418)
Q Consensus 334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-~ee~~~~~~~l~~~~Gfk 388 (418)
++|....+ .....++..+.+.+.+ +++|.++... +-+.-....+.+...|+.
T Consensus 110 ~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~ 162 (274)
T PF09243_consen 110 YVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAH 162 (274)
T ss_pred hhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCc
Confidence 99998877 6667788888777766 7877777433 222222234444444444
No 197
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0022 Score=61.41 Aligned_cols=93 Identities=20% Similarity=0.265 Sum_probs=62.9
Q ss_pred cCCCCCCeEEEECCccChHHHHHhhc----CcEEEEeccCCCHHhHHHHH----------------HcCCCceeecccCC
Q 037675 260 LGSGGIRIGFDIGGGSGTFAARMAER----NVTVITNTLNVDAPYSEFIA----------------ARGLFPLYLSLDHR 319 (418)
Q Consensus 260 l~~g~~r~VLDvGCGtG~faa~La~~----gV~vv~~alD~s~~~l~~a~----------------eRGli~~~~~~~e~ 319 (418)
+.+|- ..||+|.|+|.+++.++.. |..++ ++|..++.++.+. ++|-..++.+++..
T Consensus 80 L~pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~--GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~ 155 (237)
T KOG1661|consen 80 LQPGA--SFLDVGSGSGYLTACFARMVGATGGNVH--GIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRK 155 (237)
T ss_pred hccCc--ceeecCCCccHHHHHHHHHhcCCCcccc--chhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccc
Confidence 66674 8999999999988666632 33333 3676666665332 34444556677766
Q ss_pred CCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 320 FPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 320 LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
.--....||.||+...-. ...+++-..|+|||.++|-
T Consensus 156 g~~e~a~YDaIhvGAaa~---------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 156 GYAEQAPYDAIHVGAAAS---------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cCCccCCcceEEEccCcc---------ccHHHHHHhhccCCeEEEe
Confidence 655677899999975433 3445777889999998764
No 198
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.97 E-value=0.0017 Score=67.38 Aligned_cols=92 Identities=22% Similarity=0.255 Sum_probs=62.0
Q ss_pred CeEEEECCccChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHH----cCCC--ceeecccCCCCCCCCccceEEecCcCc
Q 037675 266 RIGFDIGGGSGTFAARMAER-NV-TVITNTLNVDAPYSEFIAA----RGLF--PLYLSLDHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~-gV-~vv~~alD~s~~~l~~a~e----RGli--~~~~~~~e~LPf~d~sFDlV~s~~~L~ 337 (418)
.+|||++||+|.++..++.. ++ .| +++|.++..++.+++ .++. .++.+++..+-...+.||+|+..
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V--~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD---- 132 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKV--TLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID---- 132 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEE--EEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC----
Confidence 37999999999999999764 53 33 347999888876654 3442 23445554432114579999973
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
+...+ ..++....+.++|||+++++.
T Consensus 133 P~Gs~---~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 133 PFGSP---APFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CCCCc---HHHHHHHHHHhcCCCEEEEEe
Confidence 22222 256677678899999999984
No 199
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=96.94 E-value=0.0032 Score=63.90 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=52.3
Q ss_pred cHHHHHHHHc------cCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH----c-CCC---cee
Q 037675 250 NDFLIDDVLA------LGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA----R-GLF---PLY 313 (418)
Q Consensus 250 y~~~I~~lL~------l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e----R-Gli---~~~ 313 (418)
|-..+.++|. +..|...+|||||||+|..+..|+.+ +..++ ++|+++..++.|++ . ++. .+.
T Consensus 94 Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~--atDId~~Al~~A~~Nv~~Np~l~~~I~~~ 171 (321)
T PRK11727 94 YIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFV--GSDIDPQALASAQAIISANPGLNGAIRLR 171 (321)
T ss_pred HHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEE--EEeCCHHHHHHHHHHHHhccCCcCcEEEE
Confidence 4445666653 22345568999999999888777765 44543 57998888876654 2 331 222
Q ss_pred e-cccCC----CCCCCCccceEEecCcCc
Q 037675 314 L-SLDHR----FPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 314 ~-~~~e~----LPf~d~sFDlV~s~~~L~ 337 (418)
. .+... +..+++.||+|+|+==++
T Consensus 172 ~~~~~~~i~~~i~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 172 LQKDSKAIFKGIIHKNERFDATLCNPPFH 200 (321)
T ss_pred EccchhhhhhcccccCCceEEEEeCCCCc
Confidence 2 11111 113467899999974333
No 200
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.89 E-value=0.0034 Score=64.49 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=67.0
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCC-C-CC--------------
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRF-P-FY-------------- 323 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~L-P-f~-------------- 323 (418)
.+|||++||+|.++..|++..-.++ ++|.++.+++.+++ .|+ +.++.++++++ + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~--~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVL--ATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEE--EEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 3699999999999998887644443 57999999987665 344 23444443331 1 10
Q ss_pred CCccceEEecCcCcCCCChhH-HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEc
Q 037675 324 DNVFDLVHASSGLDVGGQPEK-LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVG 395 (418)
Q Consensus 324 d~sFDlV~s~~~L~~~~~~~~-le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~ 395 (418)
...||+|+.. +- +.+ .+.++..+. +|++.++++.- ...+...+..+.+ ||+..+....
T Consensus 286 ~~~~D~v~lD----PP--R~G~~~~~l~~l~---~~~~ivyvSC~---p~tlarDl~~L~~--gY~l~~v~~~ 344 (362)
T PRK05031 286 SYNFSTIFVD----PP--RAGLDDETLKLVQ---AYERILYISCN---PETLCENLETLSQ--THKVERFALF 344 (362)
T ss_pred CCCCCEEEEC----CC--CCCCcHHHHHHHH---ccCCEEEEEeC---HHHHHHHHHHHcC--CcEEEEEEEc
Confidence 2258999863 11 111 124444443 47888888743 2333334555443 8876654443
No 201
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.86 E-value=0.016 Score=56.51 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=81.1
Q ss_pred CCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHc------C----CCceeecccCC-CCCCCC-ccceE
Q 037675 264 GIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAAR------G----LFPLYLSLDHR-FPFYDN-VFDLV 330 (418)
Q Consensus 264 ~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eR------G----li~~~~~~~e~-LPf~d~-sFDlV 330 (418)
..++||=||-|.|+.+..+.+.. +.-+ ..+|+++..++.+++- + .+.++++++.. +--..+ .||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i-~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESI-TVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEE-EEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceE-EEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 45799999999999999999875 3322 2469999999887652 1 12344443221 112233 89999
Q ss_pred EecCcCcCCCChhH--HHHHHHHhhccccCCcEEEEEec--ccCchhHHHHHHHHHHHcCcEEEEE--EEcccCCCCccc
Q 037675 331 HASSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLDNF--YCANDEKKSALTRLIERFGYKKLKW--VVGEKGETGKSE 404 (418)
Q Consensus 331 ~s~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~~~--~~~~ee~~~~~~~l~~~~Gfk~l~W--~~~~k~d~~~~e 404 (418)
+....- ....... -..++..+.+.|+|||.+++-.. ... ++.-..+...++.... .+.. ...+.- .+.
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~-~~~~~~i~~tl~~~F~-~v~~~~~~vP~~---~~~ 228 (246)
T PF01564_consen 155 IVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLH-PELFKSILKTLRSVFP-QVKPYTAYVPSY---GSG 228 (246)
T ss_dssp EEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTT-HHHHHHHHHHHHTTSS-EEEEEEEECTTS---CSS
T ss_pred EEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccc-hHHHHHHHHHHHHhCC-ceEEEEEEcCee---ccc
Confidence 985432 2211111 23788999999999999876542 222 2322334455555544 3332 222211 234
Q ss_pred eEEEEEEEcC
Q 037675 405 VYLSAVLQKP 414 (418)
Q Consensus 405 ~~l~Ai~qKP 414 (418)
+|..+++.|-
T Consensus 229 ~~~~~~~s~~ 238 (246)
T PF01564_consen 229 WWSFASASKD 238 (246)
T ss_dssp EEEEEEEESS
T ss_pred ceeEEEEeCC
Confidence 4666677663
No 202
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.85 E-value=0.0068 Score=61.73 Aligned_cols=95 Identities=14% Similarity=0.201 Sum_probs=59.2
Q ss_pred CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCccceEEecCcCc
Q 037675 265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~ 337 (418)
.+.|||+|||.|.++...+..|..-| .+++.| +|.+.|+. ..+ +.++.|-.|++.+ ++..|++++.-.=.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~v-YAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-PEk~DviISEPMG~ 254 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKV-YAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL-PEKVDVIISEPMGY 254 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceE-EEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC-chhccEEEeccchh
Confidence 46899999999998887777774433 344544 45554433 222 2344467777766 45699999842211
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEE
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFW 363 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~i 363 (418)
..-+...+|.++ -..|.|||.|..+
T Consensus 255 mL~NERMLEsYl-~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 255 MLVNERMLESYL-HARKWLKPNGKMF 279 (517)
T ss_pred hhhhHHHHHHHH-HHHhhcCCCCccc
Confidence 122234455554 4459999999773
No 203
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.79 E-value=0.0063 Score=56.52 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=76.4
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEE-eccCCCHHhHHHHHHcCC-CceeecccCCCC-----CCCC
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVIT-NTLNVDAPYSEFIAARGL-FPLYLSLDHRFP-----FYDN 325 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~-~alD~s~~~l~~a~eRGl-i~~~~~~~e~LP-----f~d~ 325 (418)
.|..++....| -.||++|.|||-++.++.++|+.--+ .+++.+..+.....++-- +.++.+++..+. +.+.
T Consensus 39 ~M~s~I~pesg--lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq 116 (194)
T COG3963 39 KMASVIDPESG--LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQ 116 (194)
T ss_pred HHHhccCcccC--CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCC
Confidence 34444455555 47999999999999999999753111 347888888877666522 234556665554 6678
Q ss_pred ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.||.|+|.-=+-....... -.+|.++..-|++||-++--..
T Consensus 117 ~~D~viS~lPll~~P~~~~-iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 117 FFDSVISGLPLLNFPMHRR-IAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred eeeeEEeccccccCcHHHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 8999999754444333222 3688999999999998855433
No 204
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.74 E-value=0.0024 Score=60.60 Aligned_cols=91 Identities=18% Similarity=0.237 Sum_probs=54.9
Q ss_pred cCCCCCCeEEEECCccChHHHHHhh--cCcEEEEeccCCCHHhHH----HHHHcCC---CceeecccCCCCCCCCccceE
Q 037675 260 LGSGGIRIGFDIGGGSGTFAARMAE--RNVTVITNTLNVDAPYSE----FIAARGL---FPLYLSLDHRFPFYDNVFDLV 330 (418)
Q Consensus 260 l~~g~~r~VLDvGCGtG~faa~La~--~gV~vv~~alD~s~~~l~----~a~eRGl---i~~~~~~~e~LPf~d~sFDlV 330 (418)
+.+| .+|+|+-||.|.|+..+++ ++..++ ++|.++...+ .++..++ +..+.+++..++- .+.||-|
T Consensus 99 v~~~--e~VlD~faGIG~f~l~~ak~~~~~~V~--A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drv 173 (200)
T PF02475_consen 99 VKPG--EVVLDMFAGIGPFSLPIAKHGKAKRVY--AVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRV 173 (200)
T ss_dssp --TT---EEEETT-TTTTTHHHHHHHT-SSEEE--EEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEE
T ss_pred CCcc--eEEEEccCCccHHHHHHhhhcCccEEE--EecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEE
Confidence 3555 4899999999999999998 455564 4677765444 3444444 2344567777654 8899988
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEE
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLF 362 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ 362 (418)
++..-- .. ..+|.+..+++|+||.+
T Consensus 174 im~lp~-----~~--~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 174 IMNLPE-----SS--LEFLDAALSLLKEGGII 198 (200)
T ss_dssp EE--TS-----SG--GGGHHHHHHHEEEEEEE
T ss_pred EECChH-----HH--HHHHHHHHHHhcCCcEE
Confidence 875311 11 16778899999999976
No 205
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.67 E-value=0.0088 Score=57.92 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=67.0
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhH----HHHHHcCC---Cceeec-ccCCCC
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYS----EFIAARGL---FPLYLS-LDHRFP 321 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l----~~a~eRGl---i~~~~~-~~e~LP 321 (418)
++..++.+-.. +++||+|.=||..+..++.. +-.++ ++|+++... ++.+..|+ +.++++ .++.|+
T Consensus 64 fl~~li~~~~a--k~~lelGvfTGySaL~~Alalp~dGrv~--a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 64 FLQMLIRLLNA--KRTLELGVFTGYSALAVALALPEDGRVV--AIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLD 139 (237)
T ss_pred HHHHHHHHhCC--ceEEEEecccCHHHHHHHHhcCCCceEE--EEecChHHHHHhHHHHHhccccceeeeeecchhhhHH
Confidence 34555555443 48999999888766555533 33333 245554433 33334443 455554 222221
Q ss_pred -----CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675 322 -----FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA 370 (418)
Q Consensus 322 -----f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~ 370 (418)
...++||+|+ +.+|.+.- -.++.+.-+.||+||.++++..-|.
T Consensus 140 ~l~~~~~~~tfDfaF----vDadK~nY--~~y~e~~l~Llr~GGvi~~DNvl~~ 187 (237)
T KOG1663|consen 140 ELLADGESGTFDFAF----VDADKDNY--SNYYERLLRLLRVGGVIVVDNVLWP 187 (237)
T ss_pred HHHhcCCCCceeEEE----EccchHHH--HHHHHHHHhhcccccEEEEeccccC
Confidence 3679999999 45565443 3888999999999999988875443
No 206
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.60 E-value=0.008 Score=63.65 Aligned_cols=100 Identities=16% Similarity=0.249 Sum_probs=74.8
Q ss_pred eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-----CceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675 267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-----FPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ 341 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-----i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~ 341 (418)
++|-+|||.-.+...+.+-|..-+ +.+|.|+..++....++. ......+...+.|++++||+|+.-+.++..-.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI-~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDI-TNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCc-eeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 899999999999999988875543 346999877776666552 22334688899999999999999888774321
Q ss_pred hh-------HHHHHHHHhhccccCCcEEEEEec
Q 037675 342 PE-------KLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 342 ~~-------~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.. -....+.|+.|+|+|||+++....
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 11 223568899999999999855443
No 207
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.60 E-value=0.0076 Score=56.52 Aligned_cols=114 Identities=22% Similarity=0.257 Sum_probs=67.6
Q ss_pred eEEEECCccChHHHHHhh--cCcEEEEeccCCCHH---hHHH-HHHcCCC--ceeecccCCCCCCCCccceEEecCcCcC
Q 037675 267 IGFDIGGGSGTFAARMAE--RNVTVITNTLNVDAP---YSEF-IAARGLF--PLYLSLDHRFPFYDNVFDLVHASSGLDV 338 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~--~gV~vv~~alD~s~~---~l~~-a~eRGli--~~~~~~~e~LPf~d~sFDlV~s~~~L~~ 338 (418)
+++|||.|.|--|.-|+= -...+. -+|.... +++. +.+-|+. .++++.+|. +.....||+|.+-.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~--LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~~- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVT--LVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVAP- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEE--EEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSSS-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEE--EEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhcC-
Confidence 799999999987755552 233322 2588764 4433 4445663 344566666 66789999999865432
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~ 391 (418)
+..++.-+.+.|||||.+++---....+|.. .....++..+.+...
T Consensus 127 ------l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~-~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 127 ------LDKLLELARPLLKPGGRLLAYKGPDAEEELE-EAKKAWKKLGLKVLS 172 (184)
T ss_dssp ------HHHHHHHHGGGEEEEEEEEEEESS--HHHHH-THHHHHHCCCEEEEE
T ss_pred ------HHHHHHHHHHhcCCCCEEEEEcCCChHHHHH-HHHhHHHHhCCEEee
Confidence 2377888899999999886542222222322 244455565555543
No 208
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.12 Score=53.13 Aligned_cols=128 Identities=17% Similarity=0.218 Sum_probs=80.7
Q ss_pred HHHHHccCCCCCCeEEEECCccChHHHHHhhc----CcEEEEeccCCCHHhHHH----HHHcCCCc--eeecccCCCC-C
Q 037675 254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER----NVTVITNTLNVDAPYSEF----IAARGLFP--LYLSLDHRFP-F 322 (418)
Q Consensus 254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~----gV~vv~~alD~s~~~l~~----a~eRGli~--~~~~~~e~LP-f 322 (418)
...+|...+| .+|||+-++.|+=+.+|++. +..| +++|.++.-++. +..-|+.. ....+...++ .
T Consensus 148 ~a~~L~p~pg--e~VlD~cAAPGGKTthla~~~~~~~~iV--~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~ 223 (355)
T COG0144 148 PALVLDPKPG--ERVLDLCAAPGGKTTHLAELMENEGAIV--VAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL 223 (355)
T ss_pred HHHHcCCCCc--CEEEEECCCCCCHHHHHHHhcCCCCceE--EEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc
Confidence 3445556666 59999999999877777765 3443 357888765543 34446643 3333444443 1
Q ss_pred -CC-CccceEEec------CcCc-----CCC-ChhH-------HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHH
Q 037675 323 -YD-NVFDLVHAS------SGLD-----VGG-QPEK-------LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRL 381 (418)
Q Consensus 323 -~d-~sFDlV~s~------~~L~-----~~~-~~~~-------le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l 381 (418)
+. ..||.|... +++. .|. .+.+ -..+|....++|||||.++.+.-....+|.++....+
T Consensus 224 ~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~ 303 (355)
T COG0144 224 LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERF 303 (355)
T ss_pred ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHH
Confidence 22 259999872 4442 111 1111 2367888999999999998887666666766777777
Q ss_pred HHHc
Q 037675 382 IERF 385 (418)
Q Consensus 382 ~~~~ 385 (418)
+++.
T Consensus 304 L~~~ 307 (355)
T COG0144 304 LERH 307 (355)
T ss_pred HHhC
Confidence 7664
No 209
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.53 E-value=0.01 Score=58.93 Aligned_cols=75 Identities=16% Similarity=0.300 Sum_probs=54.0
Q ss_pred HHHHHHc---cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC--C-----CceeecccCCCCC
Q 037675 253 LIDDVLA---LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG--L-----FPLYLSLDHRFPF 322 (418)
Q Consensus 253 ~I~~lL~---l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG--l-----i~~~~~~~e~LPf 322 (418)
++++++. ++++ ..||++|-|||.++..|.+.+-+|+ +++.++.|+....+|+ . ..+++++....++
T Consensus 46 v~~~I~~ka~~k~t--D~VLEvGPGTGnLT~~lLe~~kkVv--A~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 46 VIDQIVEKADLKPT--DVVLEVGPGTGNLTVKLLEAGKKVV--AVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHhccCCCCC--CEEEEeCCCCCHHHHHHHHhcCeEE--EEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 4555442 4554 4899999999999999999998886 5788889998887763 2 2345565544433
Q ss_pred CCCccceEEec
Q 037675 323 YDNVFDLVHAS 333 (418)
Q Consensus 323 ~d~sFDlV~s~ 333 (418)
-.||.++++
T Consensus 122 --P~fd~cVsN 130 (315)
T KOG0820|consen 122 --PRFDGCVSN 130 (315)
T ss_pred --cccceeecc
Confidence 348999884
No 210
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.47 E-value=0.011 Score=59.11 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=67.3
Q ss_pred CCCCCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHcCC------C----ceeecccC-CCCCCCCccc
Q 037675 261 GSGGIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAARGL------F----PLYLSLDH-RFPFYDNVFD 328 (418)
Q Consensus 261 ~~g~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eRGl------i----~~~~~~~e-~LPf~d~sFD 328 (418)
..+..++||=||-|.|+.+..+.+.+ +.-+ +.+|+++..++.+++.-. . .+.+++.. =+.-..++||
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i-~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHLPVERI-TMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcCCcceE-EEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence 34555799999999999999999885 4322 247999999998887421 1 22233221 1222234899
Q ss_pred eEEecCcCcCCCChh--HHHHHHHHhhccccCCcEEEEE
Q 037675 329 LVHASSGLDVGGQPE--KLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 329 lV~s~~~L~~~~~~~--~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
+|+....=. ..+-+ --+.++..+.|.|+|+|.++.-
T Consensus 152 vIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 152 VIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 999853221 11100 0137899999999999988665
No 211
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.46 E-value=0.00052 Score=62.80 Aligned_cols=51 Identities=24% Similarity=0.203 Sum_probs=43.7
Q ss_pred ccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 316 LDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 316 ~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.....+|.+++.|+|+|.+++.|..-.++ ..++.|.+|+|||||++-+..|
T Consensus 37 As~e~~F~dns~d~iyaeHvlEHlt~~Eg-~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 37 ASNESMFEDNSVDAIYAEHVLEHLTYDEG-TSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred hhhhccCCCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCcCcEEEEEcC
Confidence 44567899999999999999999876544 5799999999999999988776
No 212
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.45 E-value=0.0067 Score=62.08 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=56.2
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhHH
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKL 345 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~l 345 (418)
.++||+||++|+|+..|.++|..|+ ++|.. +|-....+.+.+..+..+..++..+.+.+|+|+|..+-. |.
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~~V~--AVD~g-~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~----P~-- 283 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGMFVT--AVDNG-PMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK----PA-- 283 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCCEEE--EEech-hcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC----HH--
Confidence 5899999999999999999998665 57844 344444555544555443333322367899999976543 33
Q ss_pred HHHHHHhhccccCC
Q 037675 346 EFLMFDFDRILRAG 359 (418)
Q Consensus 346 e~~L~Ei~RVLRPG 359 (418)
.+..-|.+.|..|
T Consensus 284 -rva~lm~~Wl~~g 296 (357)
T PRK11760 284 -RVAELMAQWLVNG 296 (357)
T ss_pred -HHHHHHHHHHhcC
Confidence 5556666667665
No 213
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.035 Score=54.13 Aligned_cols=123 Identities=15% Similarity=0.217 Sum_probs=80.4
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-Cceee-cccCCC---CCCCCccceEEecCcCcCCC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-FPLYL-SLDHRF---PFYDNVFDLVHASSGLDVGG 340 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-i~~~~-~~~e~L---Pf~d~sFDlV~s~~~L~~~~ 340 (418)
+++||+|.-||+|+..+.++|..-| .++|+.-.|+.--..... +-.+. .++..+ .|. +..|+++|.-.|..
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gAk~V-yavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSFIS-- 156 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGAKHV-YAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSFIS-- 156 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCCcEE-EEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeehhh--
Confidence 6899999999999999999986655 578998877754333332 11222 233322 122 26789999877753
Q ss_pred ChhHHHHHHHHhhccccCCcEEEEEe-c-ccC------------ch----hHHHHHHHHHHHcCcEEEEEEEcc
Q 037675 341 QPEKLEFLMFDFDRILRAGGLFWLDN-F-YCA------------ND----EKKSALTRLIERFGYKKLKWVVGE 396 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPGG~~ii~~-~-~~~------------~e----e~~~~~~~l~~~~Gfk~l~W~~~~ 396 (418)
+..+|-.+..+|+|+|.++..- | |-. ++ .....+...++..||..+.-...+
T Consensus 157 ----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Sp 226 (245)
T COG1189 157 ----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSP 226 (245)
T ss_pred ----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccC
Confidence 3488999999999999875543 2 110 01 122456777888899877544433
No 214
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.38 E-value=0.0023 Score=61.33 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=84.6
Q ss_pred CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceee--cccCCCCCCCCccceEEecCcCcCCCCh
Q 037675 265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYL--SLDHRFPFYDNVFDLVHASSGLDVGGQP 342 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~--~~~e~LPf~d~sFDlV~s~~~L~~~~~~ 342 (418)
..++||+|+|.|..+..|+..--.+ .+.+.|..|.......+. .+.. .|.+ -+-.||+|.|-..+..-.++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feev--yATElS~tMr~rL~kk~y-nVl~~~ew~~----t~~k~dli~clNlLDRc~~p 185 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEV--YATELSWTMRDRLKKKNY-NVLTEIEWLQ----TDVKLDLILCLNLLDRCFDP 185 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHH--HHHHhhHHHHHHHhhcCC-ceeeehhhhh----cCceeehHHHHHHHHhhcCh
Confidence 4589999999999998887653222 345888889888877775 3322 2332 24469999998877755444
Q ss_pred hHHHHHHHHhhccccC-CcEEEEEec--ccC-----------c------------hhHHHHHHHHHHHcCcEEEEEEEcc
Q 037675 343 EKLEFLMFDFDRILRA-GGLFWLDNF--YCA-----------N------------DEKKSALTRLIERFGYKKLKWVVGE 396 (418)
Q Consensus 343 ~~le~~L~Ei~RVLRP-GG~~ii~~~--~~~-----------~------------ee~~~~~~~l~~~~Gfk~l~W~~~~ 396 (418)
- ++|.+|.-||+| .|.+|+.-. +.+ . ++....+.++++..||..--|...+
T Consensus 186 ~---kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrlP 262 (288)
T KOG3987|consen 186 F---KLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRLP 262 (288)
T ss_pred H---HHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcCC
Confidence 4 899999999999 898876531 111 0 1222457788999999877676544
No 215
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.35 E-value=0.045 Score=51.87 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=73.0
Q ss_pred CeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceee----------cccCCCCCCCCccceEEecC
Q 037675 266 RIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYL----------SLDHRFPFYDNVFDLVHASS 334 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~----------~~~e~LPf~d~sFDlV~s~~ 334 (418)
.+|||+||-.|+|+....++ +...+.+++|+- .+.--+|...+.. ...|.+ |++..|+|++..
T Consensus 71 ~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll----h~~p~~Ga~~i~~~dvtdp~~~~ki~e~l--p~r~VdvVlSDM 144 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL----HIEPPEGATIIQGNDVTDPETYRKIFEAL--PNRPVDVVLSDM 144 (232)
T ss_pred CEEEEccCCCChHHHHHHHhhCCCceEEEEeee----eccCCCCcccccccccCCHHHHHHHHHhC--CCCcccEEEecc
Confidence 48999999999999888776 433333456651 1111122211111 122344 578899999854
Q ss_pred cCcCC----CChhH-HH---HHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceE
Q 037675 335 GLDVG----GQPEK-LE---FLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVY 406 (418)
Q Consensus 335 ~L~~~----~~~~~-le---~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~ 406 (418)
.=... .+... ++ .++.=..-.++|+|.|+.- . |.+++....-..|.+. |++++-....-..++..|.|
T Consensus 145 apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK-~-w~g~e~~~l~r~l~~~--f~~Vk~vKP~Asr~eS~E~y 220 (232)
T KOG4589|consen 145 APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK-L-WDGSEEALLQRRLQAV--FTNVKKVKPDASRDESAETY 220 (232)
T ss_pred CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE-E-ecCCchHHHHHHHHHH--hhhcEeeCCcccccccccee
Confidence 32211 11111 11 2233333457899988543 2 3333322222233333 66665322221223456999
Q ss_pred EEEEEEcCCCC
Q 037675 407 LSAVLQKPVRV 417 (418)
Q Consensus 407 l~Ai~qKP~~~ 417 (418)
+.+.-.|+...
T Consensus 221 ~v~~~~k~~~d 231 (232)
T KOG4589|consen 221 LVCLNFKGNVD 231 (232)
T ss_pred eeeeeccCcCC
Confidence 99988887543
No 216
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.011 Score=58.42 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=53.8
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCC-ccceEEecCc
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDN-VFDLVHASSG 335 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~-sFDlV~s~~~ 335 (418)
.+||+||+|.|.++..|++++-.++ ++++++.+++..+++- -+.++++|+-.++|++- .++.|+++-=
T Consensus 32 d~VlEIGpG~GaLT~~Ll~~~~~v~--aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlP 104 (259)
T COG0030 32 DNVLEIGPGLGALTEPLLERAARVT--AIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANLP 104 (259)
T ss_pred CeEEEECCCCCHHHHHHHhhcCeEE--EEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEcCC
Confidence 5899999999999999999986654 4688888888777663 23567788888888765 6888988643
No 217
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.18 E-value=0.2 Score=49.54 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=83.0
Q ss_pred eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCC--CCccceEEecCc---Cc----
Q 037675 267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFY--DNVFDLVHASSG---LD---- 337 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~--d~sFDlV~s~~~---L~---- 337 (418)
+|+|+-||.|++...|.+.|..++ .++|.++..++..+..--...+.++...+... ...+|+++.+-- +.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v-~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIV-AANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEE-EEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhh
Confidence 699999999999999988887776 57899888776554432212344555555322 356999998631 11
Q ss_pred --CCCC-hhHHHHHHHHhhccccCCcEEEEEeccc----CchhHHHHHHHHHHHcCcEEEEEEEcccCC---C-CccceE
Q 037675 338 --VGGQ-PEKLEFLMFDFDRILRAGGLFWLDNFYC----ANDEKKSALTRLIERFGYKKLKWVVGEKGE---T-GKSEVY 406 (418)
Q Consensus 338 --~~~~-~~~le~~L~Ei~RVLRPGG~~ii~~~~~----~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d---~-~~~e~~ 406 (418)
...+ ...+-..+.++-+.+||. +|++..... ...+..+.+...++.+||. +.|.+..-.+ + .|..+|
T Consensus 81 ~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~-~~~~~l~a~~~GvPQ~R~R~~ 158 (275)
T cd00315 81 RKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYN-VYWKLLNASDYGVPQNRERVF 158 (275)
T ss_pred cCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcE-EEEEEEEHHHcCCCCCCcEEE
Confidence 1112 221222333444455676 344544311 1123345577778999997 5666544323 2 455666
Q ss_pred EEEEE
Q 037675 407 LSAVL 411 (418)
Q Consensus 407 l~Ai~ 411 (418)
+.++.
T Consensus 159 ~ia~~ 163 (275)
T cd00315 159 IIGIR 163 (275)
T ss_pred EEEEe
Confidence 66664
No 218
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.14 E-value=0.083 Score=55.19 Aligned_cols=121 Identities=15% Similarity=0.105 Sum_probs=79.9
Q ss_pred CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCCC----ceeeccc----CCCCCCCCccceEEe
Q 037675 266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGLF----PLYLSLD----HRFPFYDNVFDLVHA 332 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGli----~~~~~~~----e~LPf~d~sFDlV~s 332 (418)
++|||+=|=||+|+.+.+..|. .|+ .+|.|...++.|++ .|+. .++.+++ +.+--...+||+|+.
T Consensus 219 krvLNlFsYTGgfSv~Aa~gGA~~vt--~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALGGASEVT--SVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CeEEEecccCcHHHHHHHhcCCCceE--EEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 4899999999999999999886 554 47999988877665 4552 2333322 222223459999998
Q ss_pred c-CcCc-----CCCChhHHHHHHHHhhccccCCcEEEEEecccC--chhHHHHHHHHHHHcCcE
Q 037675 333 S-SGLD-----VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA--NDEKKSALTRLIERFGYK 388 (418)
Q Consensus 333 ~-~~L~-----~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~--~ee~~~~~~~l~~~~Gfk 388 (418)
. =.|. -|.-..+...++....++|+|||+++++.-... .+...+.+...+...|..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~ 360 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRR 360 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCc
Confidence 3 1111 133344567889999999999999988765433 234445555555555443
No 219
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.07 E-value=0.12 Score=53.13 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=82.2
Q ss_pred CCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHH----HHHcCC---CceeecccCCCCCCCCccceEEec
Q 037675 261 GSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEF----IAARGL---FPLYLSLDHRFPFYDNVFDLVHAS 333 (418)
Q Consensus 261 ~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~----a~eRGl---i~~~~~~~e~LPf~d~sFDlV~s~ 333 (418)
.+|+ +|+||=+|.|.|+..+++.+...| +++|+++..++. ++..++ +..+.+++..++..-+.||-|++.
T Consensus 187 ~~GE--~V~DmFAGVGpfsi~~Ak~g~~~V-~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~ 263 (341)
T COG2520 187 KEGE--TVLDMFAGVGPFSIPIAKKGRPKV-YAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMG 263 (341)
T ss_pred cCCC--EEEEccCCcccchhhhhhcCCceE-EEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeC
Confidence 4464 899999999999999999874422 467888765544 444444 345668888887766899999986
Q ss_pred CcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch---hHHHHHHHHHHHcCcE--EEEEEEcc
Q 037675 334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND---EKKSALTRLIERFGYK--KLKWVVGE 396 (418)
Q Consensus 334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e---e~~~~~~~l~~~~Gfk--~l~W~~~~ 396 (418)
.--. -..++....+.+|+||.+-.-.+....+ ...+.+.......|++ .+.|....
T Consensus 264 ~p~~-------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~Vk 324 (341)
T COG2520 264 LPKS-------AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVK 324 (341)
T ss_pred CCCc-------chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEec
Confidence 5321 1156777888899999874443322221 1235567777777753 34454443
No 220
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.05 E-value=0.064 Score=54.50 Aligned_cols=102 Identities=16% Similarity=0.104 Sum_probs=64.2
Q ss_pred CeEEEECCccChHHHHHhh----cC--cEEEEeccCCCHHhHHHHHHcCC---Cc-e----eeccc----CCCCC--CCC
Q 037675 266 RIGFDIGGGSGTFAARMAE----RN--VTVITNTLNVDAPYSEFIAARGL---FP-L----YLSLD----HRFPF--YDN 325 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~----~g--V~vv~~alD~s~~~l~~a~eRGl---i~-~----~~~~~----e~LPf--~d~ 325 (418)
..++|+|||.|.=...|.+ .+ ++. +++|+|.++++.+.++-. .| + +.++. ..+|- ...
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y--~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDY--YALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceE--EEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 3799999999976544432 22 443 358999999987655311 12 2 12211 22322 233
Q ss_pred ccceEEec-CcCcCCCChhHHHHHHHHhhc-cccCCcEEEEEecccC
Q 037675 326 VFDLVHAS-SGLDVGGQPEKLEFLMFDFDR-ILRAGGLFWLDNFYCA 370 (418)
Q Consensus 326 sFDlV~s~-~~L~~~~~~~~le~~L~Ei~R-VLRPGG~~ii~~~~~~ 370 (418)
...+++.- .++.+..+.+ ...+|.++.+ .|+|||.|+|.--.++
T Consensus 156 ~~r~~~flGSsiGNf~~~e-a~~fL~~~~~~~l~~~d~lLiG~D~~k 201 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPE-AAAFLAGFLATALSPSDSFLIGLDGCK 201 (319)
T ss_pred CccEEEEeCccccCCCHHH-HHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 45676664 5788876544 5689999999 9999999988644443
No 221
>PRK13699 putative methylase; Provisional
Probab=96.04 E-value=0.021 Score=55.06 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=46.3
Q ss_pred eeecccCCC--CCCCCccceEEec--CcC--cCC-C-------ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHH
Q 037675 312 LYLSLDHRF--PFYDNVFDLVHAS--SGL--DVG-G-------QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSA 377 (418)
Q Consensus 312 ~~~~~~e~L--Pf~d~sFDlV~s~--~~L--~~~-~-------~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~ 377 (418)
++++++.++ .++++++|+|++. +.+ ... . ..+-++.++.|+.|||||||.+++-..+.. . ..
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~---~-~~ 79 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNR---V-DR 79 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecccc---H-HH
Confidence 344555433 4679999999986 211 110 0 012245789999999999998875322111 1 23
Q ss_pred HHHHHHHcCcEEEE
Q 037675 378 LTRLIERFGYKKLK 391 (418)
Q Consensus 378 ~~~l~~~~Gfk~l~ 391 (418)
+..+++..||....
T Consensus 80 ~~~al~~~GF~l~~ 93 (227)
T PRK13699 80 FMAAWKNAGFSVVG 93 (227)
T ss_pred HHHHHHHCCCEEee
Confidence 55667889997554
No 222
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.94 E-value=0.081 Score=53.62 Aligned_cols=142 Identities=18% Similarity=0.158 Sum_probs=88.1
Q ss_pred CCcHHHHHHHHccCC--C---CCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhH---HHHHHc----C---CCce
Q 037675 248 GKNDFLIDDVLALGS--G---GIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYS---EFIAAR----G---LFPL 312 (418)
Q Consensus 248 ~~y~~~I~~lL~l~~--g---~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l---~~a~eR----G---li~~ 312 (418)
.-|...|+++-.+-+ + +.-.||==|||.|+++..|+..|..+-|+ +.|.-|+ .++..- + +.|+
T Consensus 129 ~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGN--EfSy~Mli~S~FiLN~~~~~nq~~IYPf 206 (369)
T KOG2798|consen 129 QLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGN--EFSYFMLICSSFILNYCKQENQFTIYPF 206 (369)
T ss_pred hhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhccccccc--HHHHHHHHHHHHHHHhhccCCcEEEEee
Confidence 357778887654422 1 12368999999999999999999887764 4455444 344321 1 1122
Q ss_pred eec--------------------------ccCCC-------------CCCCCccceEEecCcCcCCCChhHHHHHHHHhh
Q 037675 313 YLS--------------------------LDHRF-------------PFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFD 353 (418)
Q Consensus 313 ~~~--------------------------~~e~L-------------Pf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~ 353 (418)
++. ..+.+ +-..++||+|+....+.-. .++-.++.-|.
T Consensus 207 Ih~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa---~NileYi~tI~ 283 (369)
T KOG2798|consen 207 IHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA---HNILEYIDTIY 283 (369)
T ss_pred eeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech---HHHHHHHHHHH
Confidence 221 01111 1112469999887444332 34558999999
Q ss_pred ccccCCcEEEEEec--c--cC--c-------hhHHHHHHHHHHHcCcEEEEEEE
Q 037675 354 RILRAGGLFWLDNF--Y--CA--N-------DEKKSALTRLIERFGYKKLKWVV 394 (418)
Q Consensus 354 RVLRPGG~~ii~~~--~--~~--~-------ee~~~~~~~l~~~~Gfk~l~W~~ 394 (418)
.+|||||+++=.+| + .. + +-.-+.+..+++..||+.++-+.
T Consensus 284 ~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 284 KILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred HhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEeee
Confidence 99999998866665 1 11 0 11135688899999999887553
No 223
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.79 E-value=0.39 Score=46.16 Aligned_cols=166 Identities=16% Similarity=0.182 Sum_probs=93.5
Q ss_pred cCcccccccccccCCcHHHHHH---HHccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCH----HhHHHHHH
Q 037675 235 DNPNENQRYIKARGKNDFLIDD---VLALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDA----PYSEFIAA 306 (418)
Q Consensus 235 w~~~e~~~W~~~~~~y~~~I~~---lL~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~----~~l~~a~e 306 (418)
|.+.+-+.|.-........|-. .+++++|+ +||=+|+-+|+...+.++- + .....+++.++ ..+..+.+
T Consensus 46 ~~~~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~--~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~ 122 (231)
T COG1889 46 VEGEEYREWNPRRSKLAAAILKGLKNFPIKEGS--KVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK 122 (231)
T ss_pred ecCcceeeeCcchhHHHHHHHcCcccCCcCCCC--EEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh
Confidence 4455566775432221121211 12355664 8999999999999888875 3 11113456665 34556777
Q ss_pred c-CCCceeeccc--CCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC------chhHHHH
Q 037675 307 R-GLFPLYLSLD--HRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA------NDEKKSA 377 (418)
Q Consensus 307 R-Gli~~~~~~~--e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~------~ee~~~~ 377 (418)
| +++|.+.+.. +...+.-+..|+|+.. ..++...+-+...+..-||+||++++.--... .++.-+.
T Consensus 123 R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ 197 (231)
T COG1889 123 RPNIIPILEDARKPEKYRHLVEKVDVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKD 197 (231)
T ss_pred CCCceeeecccCCcHHhhhhcccccEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHH
Confidence 6 5667766532 2222334568888863 34455667889999999999998877644221 1222222
Q ss_pred HHHHHHHcCcEEEEEEEcccCCCCccceEEEEE
Q 037675 378 LTRLIERFGYKKLKWVVGEKGETGKSEVYLSAV 410 (418)
Q Consensus 378 ~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai 410 (418)
-..-++..+|+.+.-...+- -++++..+.+.
T Consensus 198 ev~kL~~~~f~i~e~~~LeP--ye~DH~~i~~~ 228 (231)
T COG1889 198 EVEKLEEGGFEILEVVDLEP--YEKDHALIVAK 228 (231)
T ss_pred HHHHHHhcCceeeEEeccCC--cccceEEEEEe
Confidence 23345566777664222111 24667555443
No 224
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.76 E-value=0.014 Score=60.58 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=62.9
Q ss_pred eEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCC-CCCCCccceEEecCcCc
Q 037675 267 IGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRF-PFYDNVFDLVHASSGLD 337 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~L-Pf~d~sFDlV~s~~~L~ 337 (418)
+|||+-||+|..+.+++.+ |+.-+ ++.|.++..++.+++ .++ +.++.+++..+ ....+.||+|...
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~V-v~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD---- 121 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREV-FANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID---- 121 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEE-EEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC----
Confidence 7999999999999999887 54332 347888877765543 333 23344443332 2223579999863
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
+...+. .++..+.+.+++||++.++.
T Consensus 122 PfGs~~---~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 PFGTPA---PFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCCcH---HHHHHHHHhcccCCEEEEEe
Confidence 333333 78889999999999998874
No 225
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.70 E-value=0.017 Score=58.07 Aligned_cols=77 Identities=19% Similarity=0.139 Sum_probs=51.5
Q ss_pred HHHHHHc---cCCCCCCeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCC
Q 037675 253 LIDDVLA---LGSGGIRIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPF 322 (418)
Q Consensus 253 ~I~~lL~---l~~g~~r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf 322 (418)
+++++|. +.+| .+++|.+||.|+.+..+++.. ..++ ++|.++.+++.++++- -+.+++++...+.-
T Consensus 7 ll~Evl~~L~~~pg--~~vlD~TlG~GGhS~~il~~~~~~g~Vi--giD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 7 LLDEVVDALAIKPD--GIYVDGTFGGGGHSRAILERLGPKGRLI--AIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKE 82 (296)
T ss_pred cHHHHHHhhCCCCC--CEEEEeCcCChHHHHHHHHhCCCCCEEE--EEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHH
Confidence 3445544 3344 489999999999999999873 4554 5899999999887652 23445554444321
Q ss_pred -CC---CccceEEec
Q 037675 323 -YD---NVFDLVHAS 333 (418)
Q Consensus 323 -~d---~sFDlV~s~ 333 (418)
.+ .+||.|++.
T Consensus 83 ~l~~~~~~vDgIl~D 97 (296)
T PRK00050 83 VLAEGLGKVDGILLD 97 (296)
T ss_pred HHHcCCCccCEEEEC
Confidence 11 278998885
No 226
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.60 E-value=0.17 Score=51.85 Aligned_cols=129 Identities=19% Similarity=0.184 Sum_probs=64.8
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCCc--eeecccCCC------
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLFP--LYLSLDHRF------ 320 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli~--~~~~~~e~L------ 320 (418)
+++.++.+-.....+|||+=||+|.|+..|++..-.|+ +++.++.+++.|++ .|+.. ++.+.++++
T Consensus 185 l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~--gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~ 262 (352)
T PF05958_consen 185 LYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVI--GVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAK 262 (352)
T ss_dssp HHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEE--EEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCC
T ss_pred HHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEE--EeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHh
Confidence 44444443222223799999999999999999876665 46888888876543 45532 233333222
Q ss_pred ----------CCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675 321 ----------PFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL 390 (418)
Q Consensus 321 ----------Pf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l 390 (418)
......+|+|+. .+ ++.++...+.+.- .++.=.++|+ |+...+...+..+. + ||+..
T Consensus 263 ~r~~~~~~~~~~~~~~~d~vil----DP--PR~G~~~~~~~~~--~~~~~ivYvS---CnP~tlaRDl~~L~-~-~y~~~ 329 (352)
T PF05958_consen 263 AREFNRLKGIDLKSFKFDAVIL----DP--PRAGLDEKVIELI--KKLKRIVYVS---CNPATLARDLKILK-E-GYKLE 329 (352)
T ss_dssp S-GGTTGGGS-GGCTTESEEEE---------TT-SCHHHHHHH--HHSSEEEEEE---S-HHHHHHHHHHHH-C-CEEEE
T ss_pred hHHHHhhhhhhhhhcCCCEEEE----cC--CCCCchHHHHHHH--hcCCeEEEEE---CCHHHHHHHHHHHh-h-cCEEE
Confidence 122346888874 22 2223223222222 2444455555 44444444454443 3 88866
Q ss_pred EEEEcc
Q 037675 391 KWVVGE 396 (418)
Q Consensus 391 ~W~~~~ 396 (418)
+....+
T Consensus 330 ~v~~~D 335 (352)
T PF05958_consen 330 KVQPVD 335 (352)
T ss_dssp EEEEE-
T ss_pred EEEEee
Confidence 554433
No 227
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.50 E-value=0.18 Score=48.57 Aligned_cols=114 Identities=22% Similarity=0.227 Sum_probs=68.3
Q ss_pred CeEEEECCccChHHHHHh--hc--CcEEEEeccCCCH---HhHHHH-HHcCCC--ceeecccCCCCCCCCccceEEecCc
Q 037675 266 RIGFDIGGGSGTFAARMA--ER--NVTVITNTLNVDA---PYSEFI-AARGLF--PLYLSLDHRFPFYDNVFDLVHASSG 335 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La--~~--gV~vv~~alD~s~---~~l~~a-~eRGli--~~~~~~~e~LPf~d~sFDlV~s~~~ 335 (418)
.+++|||.|.|--+.-|+ .. .++. +|... .+++.+ .+-|+. .++++-+|.+.-..+.||+|.|-.+
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~p~~~vtL----les~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAFPDLKVTL----LESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhccCCcEEE----EccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc
Confidence 589999999998776665 22 3444 46653 566544 445663 4455777776532222999998553
Q ss_pred CcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675 336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~ 391 (418)
-. +..++.=....||+||+++.--+....++. .+.+......|+...+
T Consensus 145 a~-------L~~l~e~~~pllk~~g~~~~~k~~~~~~e~-~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 145 AS-------LNVLLELCLPLLKVGGGFLAYKGLAGKDEL-PEAEKAILPLGGQVEK 192 (215)
T ss_pred cc-------hHHHHHHHHHhcccCCcchhhhHHhhhhhH-HHHHHHHHhhcCcEEE
Confidence 32 225555667889999987443333322332 2345556666676554
No 228
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.32 E-value=0.08 Score=52.60 Aligned_cols=111 Identities=15% Similarity=0.148 Sum_probs=60.4
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhh---------cCcEEEEeccCCCHHhHHHHHH----cCCC----ceeec
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAE---------RNVTVITNTLNVDAPYSEFIAA----RGLF----PLYLS 315 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~---------~gV~vv~~alD~s~~~l~~a~e----RGli----~~~~~ 315 (418)
+|.+++....+ .+|+|-.||+|+|...+.+ ....+. +.|+++.+...+.. +|.- ....+
T Consensus 37 l~~~~~~~~~~--~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~--G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 37 LMVKLLNPKKG--DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIY--GIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHTT-TT--EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEE--EEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHhhhhcccc--ceeechhhhHHHHHHHHHHhhcccccccccceeE--eecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 34444444433 4799999999999877665 234444 47888877765543 3321 13333
Q ss_pred ccCCCCC-C-CCccceEEec--CcCcCCCC----------------hhHHHHHHHHhhccccCCcEEEEEec
Q 037675 316 LDHRFPF-Y-DNVFDLVHAS--SGLDVGGQ----------------PEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 316 ~~e~LPf-~-d~sFDlV~s~--~~L~~~~~----------------~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+.-..+. . .+.||+|+++ .....|.. ...--.++..+.+.||+||++.+.-+
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 3322222 2 5789999996 22220100 01112477889999999998755444
No 229
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.25 E-value=0.27 Score=52.80 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=29.6
Q ss_pred CCeEEEECCccChHHHHHhhcC--------cEEEEeccCCCHHhHHHHHH
Q 037675 265 IRIGFDIGGGSGTFAARMAERN--------VTVITNTLNVDAPYSEFIAA 306 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~g--------V~vv~~alD~s~~~l~~a~e 306 (418)
..+|||.+||+|.|...++++. +..-..+.|+++..++.++.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~ 81 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK 81 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence 3489999999999987776542 22222468998887776654
No 230
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.25 E-value=0.069 Score=50.90 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=71.8
Q ss_pred ccCCCCCCeEEEECCccChHHHHHhhc-CcE--EEEec-cCC-------CHHhHHHHHHcCCC--ceeecccCCCCCCCC
Q 037675 259 ALGSGGIRIGFDIGGGSGTFAARMAER-NVT--VITNT-LNV-------DAPYSEFIAARGLF--PLYLSLDHRFPFYDN 325 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGtG~faa~La~~-gV~--vv~~a-lD~-------s~~~l~~a~eRGli--~~~~~~~e~LPf~d~ 325 (418)
.+++|. +|+|+=-|.|.|+.-|+.. +.+ |-+++ .+. .+.+...+++.+.. ..+....-.++ +++
T Consensus 45 Glkpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 45 GLKPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQ 121 (238)
T ss_pred ccCCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCC
Confidence 367774 8999999999999888865 322 21122 111 12222233333221 12222333444 556
Q ss_pred ccceEEecC---cCcC-CCChhHHHHHHHHhhccccCCcEEEEEecccC-c---hh-------HHHHHHHHHHHcCcEEE
Q 037675 326 VFDLVHASS---GLDV-GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA-N---DE-------KKSALTRLIERFGYKKL 390 (418)
Q Consensus 326 sFDlV~s~~---~L~~-~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-~---ee-------~~~~~~~l~~~~Gfk~l 390 (418)
..|++.... .+|. ..++...+++..++++.|||||.+.+.+-... + .+ ......+..+..||+..
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ 201 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLE 201 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceee
Confidence 666666532 2221 11134456999999999999998877654221 1 11 12346667788899754
No 231
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.10 E-value=0.12 Score=51.85 Aligned_cols=123 Identities=14% Similarity=0.111 Sum_probs=70.8
Q ss_pred CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCCC----ceeecccCC-CC--CCCCccceEEec
Q 037675 266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGLF----PLYLSLDHR-FP--FYDNVFDLVHAS 333 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGli----~~~~~~~e~-LP--f~d~sFDlV~s~ 333 (418)
++|||+=|=||+|+.+.+..|. .|+ .+|.|...++.+++ .|+- .++..++-. +. -..+.||+|++.
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA~~v~--~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGAKEVV--SVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTESEEE--EEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CceEEecCCCCHHHHHHHHCCCCEEE--EEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 5999999999999999888885 343 48999998887665 3542 222222211 11 024689999983
Q ss_pred ---CcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC--chhHHHHHHHHHHHcCcEEEEE
Q 037675 334 ---SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA--NDEKKSALTRLIERFGYKKLKW 392 (418)
Q Consensus 334 ---~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~--~ee~~~~~~~l~~~~Gfk~l~W 392 (418)
..=..+.-..+...++....++|+|||++++..-... .+.+.+.+...... ++.+.+
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~--~~~~~~ 264 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAARE--VEFIER 264 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHH--CEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCcc--ceEeee
Confidence 2111222234566788899999999999866543222 23333434444444 444443
No 232
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.04 E-value=0.059 Score=47.75 Aligned_cols=53 Identities=25% Similarity=0.363 Sum_probs=36.7
Q ss_pred HHHHHHcc--CCCCCCeEEEECCccChHHHHHhh-----c-CcEEEEeccCCCHHhHHHHHHc
Q 037675 253 LIDDVLAL--GSGGIRIGFDIGGGSGTFAARMAE-----R-NVTVITNTLNVDAPYSEFIAAR 307 (418)
Q Consensus 253 ~I~~lL~l--~~g~~r~VLDvGCGtG~faa~La~-----~-gV~vv~~alD~s~~~l~~a~eR 307 (418)
+|..++.. .......|+|+|||.|.++..|+. . +..++ ++|.++..++.+.++
T Consensus 12 ~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~--~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 12 LIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVL--GIDCNESLVESAQKR 72 (141)
T ss_pred HHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEE--EEECCcHHHHHHHHH
Confidence 45554432 223456899999999999999988 4 56665 478887777655443
No 233
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=94.97 E-value=0.037 Score=56.75 Aligned_cols=109 Identities=11% Similarity=0.071 Sum_probs=63.1
Q ss_pred eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCC-C-------C---C-----C
Q 037675 267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRF-P-------F---Y-----D 324 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~L-P-------f---~-----d 324 (418)
+|||++||+|.++..|++..-.+ +++|.++.+++.+++ .|+ +.++.++.+++ + + . .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v--~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRV--LATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEE--EEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 59999999999999998775444 357999999987765 344 23444443331 1 1 0 1
Q ss_pred CccceEEecCcCcCCCChhH-HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675 325 NVFDLVHASSGLDVGGQPEK-LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 325 ~sFDlV~s~~~L~~~~~~~~-le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~ 391 (418)
..||+|+.. +- +.+ .+.++.-+ ++|++.++|+. ....+...+..+.+ ||+..+
T Consensus 278 ~~~d~v~lD----PP--R~G~~~~~l~~l---~~~~~ivYvsC---~p~tlaRDl~~L~~--~Y~l~~ 331 (353)
T TIGR02143 278 YNCSTIFVD----PP--RAGLDPDTCKLV---QAYERILYISC---NPETLKANLEQLSE--THRVER 331 (353)
T ss_pred CCCCEEEEC----CC--CCCCcHHHHHHH---HcCCcEEEEEc---CHHHHHHHHHHHhc--CcEEEE
Confidence 137988852 21 122 12444444 44899888874 33333333444432 365443
No 234
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=94.94 E-value=0.026 Score=52.67 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=59.1
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCCc---eeecc-cCCC---CCCCCccceEEecC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLFP---LYLSL-DHRF---PFYDNVFDLVHASS 334 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli~---~~~~~-~e~L---Pf~d~sFDlV~s~~ 334 (418)
.+|||+=||+|.++....+||..-+ ..+|.+....+.+++ -+... ++..+ ...+ .-....||+|++.=
T Consensus 44 ~~vLDLFaGSGalGlEALSRGA~~v-~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSRGAKSV-VFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHTT-SEE-EEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CeEEEcCCccCccHHHHHhcCCCeE-EEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 3899999999999999999985433 246888766654443 24322 23322 2222 22478999999741
Q ss_pred cCcCCCChhHHHHHHHHhh--ccccCCcEEEEEeccc
Q 037675 335 GLDVGGQPEKLEFLMFDFD--RILRAGGLFWLDNFYC 369 (418)
Q Consensus 335 ~L~~~~~~~~le~~L~Ei~--RVLRPGG~~ii~~~~~ 369 (418)
++........++..+. .+|+++|.+++.+...
T Consensus 123 ---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 123 ---PYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp ---STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred ---CcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 1211111246666666 8999999998877543
No 235
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=94.76 E-value=0.082 Score=51.76 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=52.2
Q ss_pred HccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCCceeecccCCCCCCC---CccceE
Q 037675 258 LALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLFPLYLSLDHRFPFYD---NVFDLV 330 (418)
Q Consensus 258 L~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~~~e~LPf~d---~sFDlV 330 (418)
+.+..+ ..|||+|.|+|.++..|.+++-.++ +++.++.+.+...++ +-+.++.++...+.+++ +.-..|
T Consensus 26 ~~~~~~--~~VlEiGpG~G~lT~~L~~~~~~v~--~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~v 101 (262)
T PF00398_consen 26 LDLSEG--DTVLEIGPGPGALTRELLKRGKRVI--AVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLV 101 (262)
T ss_dssp HTCGTT--SEEEEESSTTSCCHHHHHHHSSEEE--EEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEE
T ss_pred cCCCCC--CEEEEeCCCCccchhhHhcccCcce--eecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEE
Confidence 344433 5899999999999999999874443 468889888887774 22456677888887765 456667
Q ss_pred EecC
Q 037675 331 HASS 334 (418)
Q Consensus 331 ~s~~ 334 (418)
+++-
T Consensus 102 v~Nl 105 (262)
T PF00398_consen 102 VGNL 105 (262)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7653
No 236
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=94.59 E-value=0.0088 Score=49.81 Aligned_cols=92 Identities=21% Similarity=0.214 Sum_probs=35.2
Q ss_pred EEECCccChHHHHHhhc---Cc--EEEEeccCCCH---HhHHHHHHcCC---CceeecccC-CCC-CCCCccceEEecCc
Q 037675 269 FDIGGGSGTFAARMAER---NV--TVITNTLNVDA---PYSEFIAARGL---FPLYLSLDH-RFP-FYDNVFDLVHASSG 335 (418)
Q Consensus 269 LDvGCGtG~faa~La~~---gV--~vv~~alD~s~---~~l~~a~eRGl---i~~~~~~~e-~LP-f~d~sFDlV~s~~~ 335 (418)
|++|+..|..+..|++. +. .+. ++|..+ ...+.+++.++ +.++.++.. -++ ++++.||+++....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~--~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLY--SVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------E--EEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEE--EEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68999999888777653 21 333 357766 33344444333 233444322 122 22689999997542
Q ss_pred CcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
+..+.....+..+.+.|+|||.+++.|
T Consensus 79 ----H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 ----HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ----CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 223455577889999999999998875
No 237
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=0.024 Score=52.53 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=72.5
Q ss_pred CeEEEECCccChHHHHHhhc-----CcEEEEeccCCCHHhHH---HHHHcCCC----ce--e--ecccCCCCCCCCccce
Q 037675 266 RIGFDIGGGSGTFAARMAER-----NVTVITNTLNVDAPYSE---FIAARGLF----PL--Y--LSLDHRFPFYDNVFDL 329 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~-----gV~vv~~alD~s~~~l~---~a~eRGli----~~--~--~~~~e~LPf~d~sFDl 329 (418)
+.||++|.|.-++|..|... .|++. |-++..++ .+..++.. .. + +-+..+.....++||+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~lt----dgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDi 106 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLT----DGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDI 106 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEe----cCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccE
Confidence 58999999987777655543 24443 66655443 34444421 11 0 1122233345679999
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL 390 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l 390 (418)
|.|+.|+-.-... +.++.-|.+.|||.|.-++..|...+ .+ +.+.......||...
T Consensus 107 IlaADClFfdE~h---~sLvdtIk~lL~p~g~Al~fsPRRg~-sL-~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 107 ILAADCLFFDEHH---ESLVDTIKSLLRPSGRALLFSPRRGQ-SL-QKFLDEVGTVGFTVC 162 (201)
T ss_pred EEeccchhHHHHH---HHHHHHHHHHhCcccceeEecCcccc-hH-HHHHHHHHhceeEEE
Confidence 9999998754333 48889999999999998777664432 22 336666777777643
No 238
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.38 E-value=0.21 Score=55.76 Aligned_cols=75 Identities=15% Similarity=0.045 Sum_probs=46.3
Q ss_pred eccCCCHHhHHHHHH----cCC---CceeecccCCCCCC--CCccceEEecCcC-cCCCChhHHHHHHHHhhcccc---C
Q 037675 292 NTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFY--DNVFDLVHASSGL-DVGGQPEKLEFLMFDFDRILR---A 358 (418)
Q Consensus 292 ~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~--d~sFDlV~s~~~L-~~~~~~~~le~~L~Ei~RVLR---P 358 (418)
+++|+++.+++.|++ .|+ +.+..++..+++.+ .++||+|+++==+ ..+....+++.+..++.+.|| |
T Consensus 260 ~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~ 339 (702)
T PRK11783 260 YGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFG 339 (702)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCC
Confidence 468999999887655 365 34455677777654 3589999997211 122333344555555555555 8
Q ss_pred CcEEEEEe
Q 037675 359 GGLFWLDN 366 (418)
Q Consensus 359 GG~~ii~~ 366 (418)
|+.+++..
T Consensus 340 g~~~~llt 347 (702)
T PRK11783 340 GWNAALFS 347 (702)
T ss_pred CCeEEEEe
Confidence 98886654
No 239
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=94.33 E-value=0.5 Score=47.25 Aligned_cols=127 Identities=16% Similarity=0.139 Sum_probs=77.6
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCC--CC
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRF--PF 322 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~L--Pf 322 (418)
+|-.+|.+.+|. +|++-|.|.|+++.+++.. +.+.--++.|.++...+.|++ .|+ +.+.+-+.... +.
T Consensus 96 ~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 96 MILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 566778899986 8999999999999888865 333222346888766655544 454 23344343333 33
Q ss_pred CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675 323 YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 323 ~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~ 391 (418)
.+..+|.|+... ..+| .++--.+.+||-+|.- +..|..-.|+.+ .--+++..+||..+.
T Consensus 174 ks~~aDaVFLDl-PaPw-------~AiPha~~~lk~~g~r-~csFSPCIEQvq-rtce~l~~~gf~~i~ 232 (314)
T KOG2915|consen 174 KSLKADAVFLDL-PAPW-------EAIPHAAKILKDEGGR-LCSFSPCIEQVQ-RTCEALRSLGFIEIE 232 (314)
T ss_pred cccccceEEEcC-CChh-------hhhhhhHHHhhhcCce-EEeccHHHHHHH-HHHHHHHhCCCceEE
Confidence 468899998532 3334 3444566699988843 223322223333 234556777887664
No 240
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.29 E-value=0.052 Score=47.18 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=29.4
Q ss_pred eEEEECCccChHHHHHhhcCc--EEEEeccCCCHHhHHHHHH
Q 037675 267 IGFDIGGGSGTFAARMAERNV--TVITNTLNVDAPYSEFIAA 306 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~gV--~vv~~alD~s~~~l~~a~e 306 (418)
++||+|||+|.++..+++.+. .+ .++|+++.+.+.+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v--~~~E~~~~~~~~l~~ 40 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRV--IAFEPLPDAYEILEE 40 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEE--EEEecCHHHHHHHHH
Confidence 589999999999999988753 34 357999887765544
No 241
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.16 E-value=1.4 Score=42.01 Aligned_cols=117 Identities=14% Similarity=0.028 Sum_probs=71.3
Q ss_pred EEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCC---ceeec-ccCCCCCCCCc-cceEEecCcCcC
Q 037675 268 GFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLF---PLYLS-LDHRFPFYDNV-FDLVHASSGLDV 338 (418)
Q Consensus 268 VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli---~~~~~-~~e~LPf~d~s-FDlV~s~~~L~~ 338 (418)
|.||||-.|.++.+|.++|..--.++.|+++.-++.|.+ .|+. .+..+ ..+.+ .++. .|.|+..++=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l--~~~e~~d~ivIAGMGG- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL--KPGEDVDTIVIAGMGG- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG----GGG---EEEEEEE-H-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc--CCCCCCCEEEEecCCH-
Confidence 689999999999999999854433678999876665543 4653 33344 34444 3443 78888754321
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcc
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGE 396 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~ 396 (418)
.-+..+|.+....++..-.|++ .|..... .+...+...||..++-.+..
T Consensus 78 ----~lI~~ILe~~~~~~~~~~~lIL-qP~~~~~----~LR~~L~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 78 ----ELIIEILEAGPEKLSSAKRLIL-QPNTHAY----ELRRWLYENGFEIIDEDLVE 126 (205)
T ss_dssp ----HHHHHHHHHTGGGGTT--EEEE-EESS-HH----HHHHHHHHTTEEEEEEEEEE
T ss_pred ----HHHHHHHHhhHHHhccCCeEEE-eCCCChH----HHHHHHHHCCCEEEEeEEEe
Confidence 2244778888888877667755 4544333 36777999999988755544
No 242
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.05 E-value=0.098 Score=47.85 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=46.5
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEecCcCc
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~ 337 (418)
..++|+|||.|-+.....-.+...+ .++|+++..++..... .+ +.+...+...+-+..+.||.++.+-=|.
T Consensus 50 kkl~DLgcgcGmLs~a~sm~~~e~v-lGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 50 KKLKDLGCGCGMLSIAFSMPKNESV-LGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cchhhhcCchhhhHHHhhcCCCceE-EeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 4799999999988755544443332 3578888888754332 11 2445555566666678999999875554
No 243
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.77 E-value=0.087 Score=54.22 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=62.4
Q ss_pred CCeEEEECCccChHHHHHhhcCcEEEE-eccCCCHHhHHHHH--HcCCCceeec------ccCCCCCC-CCccceEEecC
Q 037675 265 IRIGFDIGGGSGTFAARMAERNVTVIT-NTLNVDAPYSEFIA--ARGLFPLYLS------LDHRFPFY-DNVFDLVHASS 334 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~gV~vv~-~alD~s~~~l~~a~--eRGli~~~~~------~~e~LPf~-d~sFDlV~s~~ 334 (418)
...+||+|.|.|+-+.++.+.-.+.-+ ..++.++..-++.. ++++.+...+ ..+++|++ ...|++|+..+
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 346999999999655444332111000 01455655444432 2333222221 23467775 56899999876
Q ss_pred cCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675 335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY 368 (418)
Q Consensus 335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~ 368 (418)
-|-+......+...+..+..++.|||.++|.+..
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 6655554444556888999999999999998763
No 244
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=93.69 E-value=0.11 Score=47.90 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=39.3
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCC-C-CCCCc-cceEEec
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRF-P-FYDNV-FDLVHAS 333 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~L-P-f~d~s-FDlV~s~ 333 (418)
++|+|+-||.|+.+..++...-.|+ ++|+++..++.++. -|+ +.+++++..++ + +..+. ||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Vi--aidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVI--AIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEE--EEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEE--EEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3799999999999999999975554 47999888876654 353 34455533222 2 12222 8999974
No 245
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=93.64 E-value=0.15 Score=48.54 Aligned_cols=104 Identities=16% Similarity=0.259 Sum_probs=47.9
Q ss_pred HccCCCCCCeEEEECCccChHHHHHh-hcCcE-EEEeccCCCHHhHHHHH-------H----cCC----CceeecccCCC
Q 037675 258 LALGSGGIRIGFDIGGGSGTFAARMA-ERNVT-VITNTLNVDAPYSEFIA-------A----RGL----FPLYLSLDHRF 320 (418)
Q Consensus 258 L~l~~g~~r~VLDvGCGtG~faa~La-~~gV~-vv~~alD~s~~~l~~a~-------e----RGl----i~~~~~~~e~L 320 (418)
+.+.++ ...+|+|||.|......+ ..++. ++| +++.+...+.|. + .|. +.+.+++...-
T Consensus 38 ~~l~~~--dvF~DlGSG~G~~v~~aal~~~~~~~~G--IEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 38 LNLTPD--DVFYDLGSGVGNVVFQAALQTGCKKSVG--IEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp TT--TT---EEEEES-TTSHHHHHHHHHH--SEEEE--EE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred hCCCCC--CEEEECCCCCCHHHHHHHHHcCCcEEEE--EEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 345444 589999999998654444 33555 544 555543332221 1 122 11222332221
Q ss_pred CCCC---CccceEEecCc-CcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675 321 PFYD---NVFDLVHASSG-LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA 370 (418)
Q Consensus 321 Pf~d---~sFDlV~s~~~-L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~ 370 (418)
++.+ ..-|+|+++.. |. +.+...|.++..-||||-+++-...++.
T Consensus 114 ~~~~~~~s~AdvVf~Nn~~F~-----~~l~~~L~~~~~~lk~G~~IIs~~~~~~ 162 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNTCFD-----PDLNLALAELLLELKPGARIISTKPFCP 162 (205)
T ss_dssp HHHHHHGHC-SEEEE--TTT------HHHHHHHHHHHTTS-TT-EEEESS-SS-
T ss_pred HhHhhhhcCCCEEEEeccccC-----HHHHHHHHHHHhcCCCCCEEEECCCcCC
Confidence 1111 23589999754 42 3455777889999999988765444443
No 246
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.54 E-value=0.29 Score=51.12 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=17.4
Q ss_pred CCCCccceEEecCcCcCCC
Q 037675 322 FYDNVFDLVHASSGLDVGG 340 (418)
Q Consensus 322 f~d~sFDlV~s~~~L~~~~ 340 (418)
||+++.+++|++.++||..
T Consensus 158 fP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred cCCCceEEEEeeccceecc
Confidence 8999999999999999764
No 247
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.49 E-value=0.3 Score=51.72 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=69.2
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHH----HHcCCCce--eecccCCCCCC---CCccceEEecCcC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFI----AARGLFPL--YLSLDHRFPFY---DNVFDLVHASSGL 336 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a----~eRGli~~--~~~~~e~LPf~---d~sFDlV~s~~~L 336 (418)
.++||+=||.|+|+..|+++.-.|+ ++++++..++.| +..|+... ..++++++.-. ...+|.|+.
T Consensus 295 ~~vlDlYCGvG~f~l~lA~~~~~V~--gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv---- 368 (432)
T COG2265 295 ERVLDLYCGVGTFGLPLAKRVKKVH--GVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV---- 368 (432)
T ss_pred CEEEEeccCCChhhhhhcccCCEEE--EEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE----
Confidence 5899999999999999998876665 468888777654 34555432 23566666433 357899985
Q ss_pred cCCCChhHHH-HHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcE
Q 037675 337 DVGGQPEKLE-FLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYK 388 (418)
Q Consensus 337 ~~~~~~~~le-~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk 388 (418)
. +++.++. .++..+. -++|-..++|+ |+...+...+ ..+...||+
T Consensus 369 D--PPR~G~~~~~lk~l~-~~~p~~IvYVS---CNP~TlaRDl-~~L~~~gy~ 414 (432)
T COG2265 369 D--PPRAGADREVLKQLA-KLKPKRIVYVS---CNPATLARDL-AILASTGYE 414 (432)
T ss_pred C--CCCCCCCHHHHHHHH-hcCCCcEEEEe---CCHHHHHHHH-HHHHhCCeE
Confidence 2 2233344 4444444 46777888776 4443333323 335556675
No 248
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=93.42 E-value=0.46 Score=44.85 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=61.0
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----C---CCceeecccC-CCCCCCC--ccceEEecCc
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----G---LFPLYLSLDH-RFPFYDN--VFDLVHASSG 335 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----G---li~~~~~~~e-~LPf~d~--sFDlV~s~~~ 335 (418)
.++||+=+|+|.++..-++||..-+ +-+|.+....+.+++. + -...+..++. .++-... .||+|+..==
T Consensus 45 ~~~LDlFAGSGaLGlEAlSRGA~~~-~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP 123 (187)
T COG0742 45 ARVLDLFAGSGALGLEALSRGAARV-VFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP 123 (187)
T ss_pred CEEEEecCCccHhHHHHHhCCCceE-EEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC
Confidence 4899999999999999999985443 2368877666554432 2 2233444333 2222233 4999997532
Q ss_pred CcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
++.-.-...+.....+-..+|+|+|.+++...
T Consensus 124 y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 124 YAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 22100011222333446789999999888755
No 249
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.30 E-value=0.44 Score=48.72 Aligned_cols=102 Identities=16% Similarity=0.072 Sum_probs=62.5
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccC-----CC-CC-CCCccce
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDH-----RF-PF-YDNVFDL 329 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e-----~L-Pf-~d~sFDl 329 (418)
.+.+| .+||.+|||. |..+..+++. |+..+ ++++.++.+.+.+++.+-...+..... .+ .+ ..+.+|+
T Consensus 181 ~~~~g--~~VlV~g~G~vG~~~~~la~~~g~~~v-i~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~ 257 (386)
T cd08283 181 EVKPG--DTVAVWGCGPVGLFAARSAKLLGAERV-IAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDV 257 (386)
T ss_pred cCCCC--CEEEEECCCHHHHHHHHHHHHcCCCEE-EEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCE
Confidence 34455 4899999987 7787777765 66322 346888888998888732222211111 11 12 2346898
Q ss_pred EEecCc---------------CcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 330 VHASSG---------------LDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 330 V~s~~~---------------L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
|+-.-. |+...++ ...+.++.|.|+|+|.+++..
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLKLETDR---PDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEECCCCcccccccccccccccccccCc---hHHHHHHHHHhccCCEEEEEc
Confidence 877421 1111122 257889999999999997754
No 250
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=92.93 E-value=0.35 Score=48.06 Aligned_cols=105 Identities=17% Similarity=0.126 Sum_probs=55.0
Q ss_pred CCCeEEEECCccCh--HHHHHhhc---CcEEEEeccCCCHHhHHHHHH--cCC----CceeecccCCC------CCCCCc
Q 037675 264 GIRIGFDIGGGSGT--FAARMAER---NVTVITNTLNVDAPYSEFIAA--RGL----FPLYLSLDHRF------PFYDNV 326 (418)
Q Consensus 264 ~~r~VLDvGCGtG~--faa~La~~---gV~vv~~alD~s~~~l~~a~e--RGl----i~~~~~~~e~L------Pf~d~s 326 (418)
.++..||+|||.=+ .....+++ ...|| -+|+++-.+..++. .+- ..++.++..+- |--.+.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVV--YVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVV--YVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEE--EEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEE--EECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 48999999999743 44445443 45554 26888766653322 221 22333432211 111123
Q ss_pred cc-----eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675 327 FD-----LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA 370 (418)
Q Consensus 327 FD-----lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~ 370 (418)
+| .|....+||+..+.++...++..+...|-||.+++|++....
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 33 456678899988877788999999999999999999987543
No 251
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=92.92 E-value=0.068 Score=49.43 Aligned_cols=48 Identities=25% Similarity=0.345 Sum_probs=37.6
Q ss_pred CCCccceEEecCcCcCCC--------ChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675 323 YDNVFDLVHASSGLDVGG--------QPEKLEFLMFDFDRILRAGGLFWLDNFYCA 370 (418)
Q Consensus 323 ~d~sFDlV~s~~~L~~~~--------~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~ 370 (418)
+.++||.+.|.++++|.. ++.+-...+.++.++|||||.+++..|...
T Consensus 60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 578899999988886532 333445789999999999999999988553
No 252
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.91 E-value=0.6 Score=45.67 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=60.2
Q ss_pred cCCCCCCeEEEECCc-cChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC------CCCCCccceEE
Q 037675 260 LGSGGIRIGFDIGGG-SGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF------PFYDNVFDLVH 331 (418)
Q Consensus 260 l~~g~~r~VLDvGCG-tG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L------Pf~d~sFDlV~ 331 (418)
+..+ .+||..|+| .|..+..+++. |+.++ +++.++...+.+++.|. .......+.. ....+.+|+|+
T Consensus 163 ~~~~--~~vli~g~g~vG~~~~~la~~~G~~V~--~~~~s~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 163 VKPG--ETVLVIGLGGLGLNAVQIAKAMGAAVI--AVDIKEEKLELAKELGA-DEVLNSLDDSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred CCCC--CEEEEECCcHHHHHHHHHHHHcCCEEE--EEcCCHHHHHHHHHhCC-CEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence 4444 378888876 47777777764 77754 45778888888887776 3332211111 13456799887
Q ss_pred ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
..... ...+.++.|.|+++|.++...
T Consensus 238 d~~g~---------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 238 DFVGT---------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ECCCC---------HHHHHHHHHHhhcCCEEEEEC
Confidence 53211 156779999999999997653
No 253
>PRK11524 putative methyltransferase; Provisional
Probab=92.81 E-value=0.33 Score=48.11 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=34.5
Q ss_pred eeecccCCC--CCCCCccceEEec--CcC--c------CCCC---hhHHHHHHHHhhccccCCcEEEEE
Q 037675 312 LYLSLDHRF--PFYDNVFDLVHAS--SGL--D------VGGQ---PEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 312 ~~~~~~e~L--Pf~d~sFDlV~s~--~~L--~------~~~~---~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
++.+++..+ .+++++||+|++. +-. . .+.. ..-++.++.++.|+|||||.+++.
T Consensus 11 i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 11 IIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred EEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 344544442 3568899999995 211 0 1110 022457899999999999999875
No 254
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.79 E-value=1.1 Score=43.86 Aligned_cols=141 Identities=18% Similarity=0.292 Sum_probs=83.3
Q ss_pred eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC---CCCCccceEEec---CcCcC--
Q 037675 267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP---FYDNVFDLVHAS---SGLDV-- 338 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP---f~d~sFDlV~s~---~~L~~-- 338 (418)
+++|+=||.|++...|.+.|..++ .++|+++...+.-...-- ....++...+. ++. .+|+++.+ .-|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~-~a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag 78 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVV-WAVEIDPDACETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAG 78 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEE-EEEESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTS
T ss_pred cEEEEccCccHHHHHHHhcCcEEE-EEeecCHHHHHhhhhccc-ccccccccccccccccc-cceEEEeccCCceEeccc
Confidence 699999999999999999997776 578998876654333222 44445554443 444 59999885 22332
Q ss_pred ----CCChhH-HHHHHHHhhccccCCcEEEEEecc---c-CchhHHHHHHHHHHHcCcEEEEEEEcccCC---C-Cccce
Q 037675 339 ----GGQPEK-LEFLMFDFDRILRAGGLFWLDNFY---C-ANDEKKSALTRLIERFGYKKLKWVVGEKGE---T-GKSEV 405 (418)
Q Consensus 339 ----~~~~~~-le~~L~Ei~RVLRPGG~~ii~~~~---~-~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d---~-~~~e~ 405 (418)
..+..+ +-.-+.++.+.+||.- |++.... . ......+.+...++++||. +.|.+..-.+ + .|..+
T Consensus 79 ~~~~~~d~r~~L~~~~~~~v~~~~Pk~-~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~-v~~~vlna~~yGvPQ~R~R~ 156 (335)
T PF00145_consen 79 KRKGFDDPRNSLFFEFLRIVKELKPKY-FLLENVPGLLSSKNGEVFKEILEELEELGYN-VQWRVLNAADYGVPQNRERV 156 (335)
T ss_dssp THHCCCCHTTSHHHHHHHHHHHHS-SE-EEEEEEGGGGTGGGHHHHHHHHHHHHHTTEE-EEEEEEEGGGGTSSBE-EEE
T ss_pred cccccccccchhhHHHHHHHhhccceE-EEecccceeecccccccccccccccccccee-ehhccccHhhCCCCCceeeE
Confidence 223322 3344555666678955 4455431 1 1123345677788999996 6677755444 2 35566
Q ss_pred EEEEEEE
Q 037675 406 YLSAVLQ 412 (418)
Q Consensus 406 ~l~Ai~q 412 (418)
|+.++.+
T Consensus 157 fivg~r~ 163 (335)
T PF00145_consen 157 FIVGIRK 163 (335)
T ss_dssp EEEEEEG
T ss_pred EEEEECC
Confidence 6666654
No 255
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.59 E-value=0.34 Score=46.61 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=22.8
Q ss_pred eEEEECCccChHHHHHhhcCcEEEEeccCC
Q 037675 267 IGFDIGGGSGTFAARMAERNVTVITNTLNV 296 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~ 296 (418)
...|||||.|++...|+.........++++
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEI 92 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEI 92 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehh
Confidence 689999999999999998854333245554
No 256
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.37 E-value=1.9 Score=39.68 Aligned_cols=119 Identities=12% Similarity=0.135 Sum_probs=74.4
Q ss_pred ECCccChHHHHHhhc---CcEEEEeccCCCHHhH----------HHHHHcCCCceeec-ccCCCC----CCCCccceEEe
Q 037675 271 IGGGSGTFAARMAER---NVTVITNTLNVDAPYS----------EFIAARGLFPLYLS-LDHRFP----FYDNVFDLVHA 332 (418)
Q Consensus 271 vGCGtG~faa~La~~---gV~vv~~alD~s~~~l----------~~a~eRGli~~~~~-~~e~LP----f~d~sFDlV~s 332 (418)
||=|.=+|+..|++. +..++.+..|..+... +..++.|. .++++ ++..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~-~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGV-TVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCC-ccccCCCCCcccccccccCCcCCEEEE
Confidence 455555788888876 3455555577654333 23344565 55554 454443 45689999997
Q ss_pred cCcCcC--C--------CChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675 333 SSGLDV--G--------GQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 333 ~~~L~~--~--------~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~ 391 (418)
+.=... . ..+.-+..++.-..++|+++|.+.|+......-..++ ++.++++.|+..++
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~-i~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWN-IEELAAEAGLVLVR 149 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCcccc-HHHHHHhcCCEEEE
Confidence 531111 0 1123567888999999999999988866443323333 66888899997664
No 257
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=92.07 E-value=0.35 Score=46.18 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=55.0
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHH----HHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEF----IAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ 341 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~----a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~ 341 (418)
++|||+|.|.|--+..-+..|..-+ .+.|+.+...+. ++..|. .......+.+ ..+..||+|.++.++..-..
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~~v-~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~-g~~~~~Dl~LagDlfy~~~~ 157 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAAEV-VAADIDPWLEQAIRLNAAANGV-SILFTHADLI-GSPPAFDLLLAGDLFYNHTE 157 (218)
T ss_pred ceeeecccccChHHHHHHHhhhHHH-HhcCCChHHHHHhhcchhhccc-eeEEeecccc-CCCcceeEEEeeceecCchH
Confidence 5899999999987766666652211 123555544433 334454 2222222222 37889999999987754322
Q ss_pred hhHHHHHHHHhhccccC-CcEEEEEecc
Q 037675 342 PEKLEFLMFDFDRILRA-GGLFWLDNFY 368 (418)
Q Consensus 342 ~~~le~~L~Ei~RVLRP-GG~~ii~~~~ 368 (418)
. .+++. +.+.|+- |-.+++-++.
T Consensus 158 a---~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 158 A---DRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred H---HHHHH-HHHHHHhCCCEEEEeCCC
Confidence 2 25555 5555555 4455555553
No 258
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=91.80 E-value=0.59 Score=46.56 Aligned_cols=125 Identities=15% Similarity=0.284 Sum_probs=74.4
Q ss_pred HHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHH----HHcCCCceee--cccCCC-C-CCCC
Q 037675 257 VLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFI----AARGLFPLYL--SLDHRF-P-FYDN 325 (418)
Q Consensus 257 lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a----~eRGli~~~~--~~~e~L-P-f~d~ 325 (418)
.|...+| ..|||+.++.|+=+.+|++. + -.++ +.|++..-++.. ..-|+..+.. .+...+ + .+..
T Consensus 80 ~L~~~~~--~~VLD~CAapGgKt~~la~~~~~~g~i~--A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~ 155 (283)
T PF01189_consen 80 ALDPQPG--ERVLDMCAAPGGKTTHLAELMGNKGEIV--ANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPES 155 (283)
T ss_dssp HHTTTTT--SEEEESSCTTSHHHHHHHHHTTTTSEEE--EEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTT
T ss_pred ccccccc--ccccccccCCCCceeeeeecccchhHHH--HhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccccc
Confidence 3444445 48999999999988888775 2 2332 469988655543 3345533222 222222 2 2344
Q ss_pred ccceEEec------CcCcCCCC------hhH-------HHHHHHHhhccc----cCCcEEEEEecccCchhHHHHHHHHH
Q 037675 326 VFDLVHAS------SGLDVGGQ------PEK-------LEFLMFDFDRIL----RAGGLFWLDNFYCANDEKKSALTRLI 382 (418)
Q Consensus 326 sFDlV~s~------~~L~~~~~------~~~-------le~~L~Ei~RVL----RPGG~~ii~~~~~~~ee~~~~~~~l~ 382 (418)
.||.|... +++..-.+ +.+ -..+|....+.+ ||||+++.+.-.-..+|.++....++
T Consensus 156 ~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl 235 (283)
T PF01189_consen 156 KFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFL 235 (283)
T ss_dssp TEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHH
T ss_pred ccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHH
Confidence 69999872 22321110 011 135778889999 99999988765444556566677777
Q ss_pred HHc
Q 037675 383 ERF 385 (418)
Q Consensus 383 ~~~ 385 (418)
++.
T Consensus 236 ~~~ 238 (283)
T PF01189_consen 236 KRH 238 (283)
T ss_dssp HHS
T ss_pred HhC
Confidence 765
No 259
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=91.75 E-value=1.1 Score=47.23 Aligned_cols=122 Identities=15% Similarity=0.163 Sum_probs=73.4
Q ss_pred cCCCCCCeEEEECCccChHHHHHh----hcCcEEEEeccCCCHHhHH----HHHHcCCCceee--cccCCCC---CCCCc
Q 037675 260 LGSGGIRIGFDIGGGSGTFAARMA----ERNVTVITNTLNVDAPYSE----FIAARGLFPLYL--SLDHRFP---FYDNV 326 (418)
Q Consensus 260 l~~g~~r~VLDvGCGtG~faa~La----~~gV~vv~~alD~s~~~l~----~a~eRGli~~~~--~~~e~LP---f~d~s 326 (418)
+.+-+..+|||+-+-.|+=+.+++ ..|+. +|.|.+.+-+. .+..-|+...+. .+...+| |+. +
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I---~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~ 312 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVI---FANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-S 312 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceE---EecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-c
Confidence 444444699999999986444443 33544 45788776554 344557655543 2444454 555 9
Q ss_pred cceEEe----cC--cCc------CCCChh-------HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHc
Q 037675 327 FDLVHA----SS--GLD------VGGQPE-------KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERF 385 (418)
Q Consensus 327 FDlV~s----~~--~L~------~~~~~~-------~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~ 385 (418)
||-|.. ++ ++. .+.... --+++|......+||||+++.+.-.-..+|.+..+..++++.
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~ 390 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKR 390 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhC
Confidence 999984 44 332 111111 112567777788999999988866555566666666677764
No 260
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.66 E-value=0.058 Score=46.67 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=30.1
Q ss_pred ccceEEecCcCcC----CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 326 VFDLVHASSGLDV----GGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 326 sFDlV~s~~~L~~----~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.||+|.|..+--| +. .+++..++..+.+.|||||.|++.--
T Consensus 1 ~yDvilclSVtkWIHLn~G-D~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWG-DEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHH-HHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCc-CHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 3899999765332 33 35788999999999999999988643
No 261
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=90.53 E-value=1.5 Score=43.41 Aligned_cols=101 Identities=16% Similarity=0.274 Sum_probs=66.1
Q ss_pred cCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCH----HhHHHHHHc-CCCceeecccCCCC--CCCCccceEE
Q 037675 260 LGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDA----PYSEFIAAR-GLFPLYLSLDHRFP--FYDNVFDLVH 331 (418)
Q Consensus 260 l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~----~~l~~a~eR-Gli~~~~~~~e~LP--f~d~sFDlV~ 331 (418)
+++|. +||=+|++.|+.-.+..+- |...+..+++.+. ..+..|.+| +++|.+.+..+.-- ..-.-.|+|+
T Consensus 154 ikpGs--KVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIF 231 (317)
T KOG1596|consen 154 IKPGS--KVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIF 231 (317)
T ss_pred ecCCc--eEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEe
Confidence 57775 8999999999888777765 4333334555543 455677776 56777765322111 1123566666
Q ss_pred ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+ ...+++....+.....-.||+||-|+|+--
T Consensus 232 a-----Dvaqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 232 A-----DVAQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred c-----cCCCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 5 234445556778889999999999988754
No 262
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=90.52 E-value=1.5 Score=43.92 Aligned_cols=101 Identities=12% Similarity=0.132 Sum_probs=50.7
Q ss_pred CCeEEEECCccCh-HHHHHhhc-CcEEEEeccCCCHHhHHHHHH-----cCC---CceeecccCCCCCCCCccceEEecC
Q 037675 265 IRIGFDIGGGSGT-FAARMAER-NVTVITNTLNVDAPYSEFIAA-----RGL---FPLYLSLDHRFPFYDNVFDLVHASS 334 (418)
Q Consensus 265 ~r~VLDvGCGtG~-faa~La~~-gV~vv~~alD~s~~~l~~a~e-----RGl---i~~~~~~~e~LPf~d~sFDlV~s~~ 334 (418)
.++|+=||+|.=- .+..|+++ +..+....+|.++..++.+++ .|+ +.+..++....+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 4589999999654 44556554 332221346888776665432 122 2334455555555557899999876
Q ss_pred cCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
....-.. ..+++|..+.+.++||..++++..
T Consensus 201 lVg~~~e--~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 201 LVGMDAE--PKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp T-S------SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred hcccccc--hHHHHHHHHHhhCCCCcEEEEecc
Confidence 5543222 234999999999999999988854
No 263
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.44 E-value=6.1 Score=39.85 Aligned_cols=139 Identities=15% Similarity=0.178 Sum_probs=77.7
Q ss_pred EEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCC-CCccceEEecC---cCc------
Q 037675 268 GFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFY-DNVFDLVHASS---GLD------ 337 (418)
Q Consensus 268 VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~-d~sFDlV~s~~---~L~------ 337 (418)
|+|+=||.|++...|.+.|..++ .++|+++...+.-...---..+.++...+... -..+|+++.+- -+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~-~a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~~ 79 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCV-FASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKRK 79 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEE-EEEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhcccC
Confidence 68999999999999988898776 56888876665433321112233444444311 12489998751 122
Q ss_pred CCCChhHHHHHHHHhhccc---cCCcEEEEEecc----cCchhHHHHHHHHHHHcCcEEEEEEEcccCC----CCccceE
Q 037675 338 VGGQPEKLEFLMFDFDRIL---RAGGLFWLDNFY----CANDEKKSALTRLIERFGYKKLKWVVGEKGE----TGKSEVY 406 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVL---RPGG~~ii~~~~----~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d----~~~~e~~ 406 (418)
...+.. ..++.++.|++ ||. +|++.... ......-+.+...++.+||. +.|.+..-.+ ..|...|
T Consensus 80 ~~~d~r--~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~-v~~~~l~a~dyGvPQ~R~R~f 155 (315)
T TIGR00675 80 GFEDTR--GTLFFEIVRILKEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYK-VYYKVLNAKDFGVPQNRERIY 155 (315)
T ss_pred CCCCch--hhHHHHHHHHHhhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCE-EEEEEEcHHHCCCCCCccEEE
Confidence 111222 13444555544 785 34454331 11122334567778899996 4565544333 2455666
Q ss_pred EEEEE
Q 037675 407 LSAVL 411 (418)
Q Consensus 407 l~Ai~ 411 (418)
+.++-
T Consensus 156 ~ia~r 160 (315)
T TIGR00675 156 IVGFR 160 (315)
T ss_pred EEEEe
Confidence 66654
No 264
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=89.68 E-value=0.85 Score=46.84 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=63.4
Q ss_pred cCCCCCCeEEEECCc-cChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeecc-cCCCCCCCCccceEEecCcC
Q 037675 260 LGSGGIRIGFDIGGG-SGTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSL-DHRFPFYDNVFDLVHASSGL 336 (418)
Q Consensus 260 l~~g~~r~VLDvGCG-tG~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~-~e~LPf~d~sFDlV~s~~~L 336 (418)
+++|+ .|+=+|+| .|..|..+++ .|..|+ ++|.++.-.+.|++-|..-.+.+. .+.+.--.+.||+|+..-.
T Consensus 164 ~~pG~--~V~I~G~GGlGh~avQ~Aka~ga~Vi--a~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~- 238 (339)
T COG1064 164 VKPGK--WVAVVGAGGLGHMAVQYAKAMGAEVI--AITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG- 238 (339)
T ss_pred CCCCC--EEEEECCcHHHHHHHHHHHHcCCeEE--EEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-
Confidence 44554 77777776 4577888887 587764 579999999999998873333322 2222212234999987443
Q ss_pred cCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675 337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY 368 (418)
Q Consensus 337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~ 368 (418)
. ..+...-+.||+||++++....
T Consensus 239 ~---------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 P---------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred h---------hhHHHHHHHHhcCCEEEEECCC
Confidence 1 4456888999999999887653
No 265
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=89.58 E-value=2.3 Score=43.49 Aligned_cols=85 Identities=19% Similarity=0.101 Sum_probs=39.4
Q ss_pred HHHHHc-cCCCCCCeEEEECCccChHHHHHhhc------------C------cEEEEeccCCC-HHhHH-----H--HHH
Q 037675 254 IDDVLA-LGSGGIRIGFDIGGGSGTFAARMAER------------N------VTVITNTLNVD-APYSE-----F--IAA 306 (418)
Q Consensus 254 I~~lL~-l~~g~~r~VLDvGCGtG~faa~La~~------------g------V~vv~~alD~s-~~~l~-----~--a~e 306 (418)
|.+++. ....+.-+|+|+||-.|..+..+.+. + +.+.-+.+..+ =+.+= + -..
T Consensus 5 i~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~ 84 (334)
T PF03492_consen 5 IKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLK 84 (334)
T ss_dssp HHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHH
T ss_pred HHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccC
Confidence 444442 22333448999999999877444321 1 45543333332 23221 1 011
Q ss_pred cCCCceee----ccc-CCCCCCCCccceEEecCcCcCCC
Q 037675 307 RGLFPLYL----SLD-HRFPFYDNVFDLVHASSGLDVGG 340 (418)
Q Consensus 307 RGli~~~~----~~~-e~LPf~d~sFDlV~s~~~L~~~~ 340 (418)
... +.+. +.. .+| ||++|.|++|++.++||..
T Consensus 85 ~~~-~~f~~gvpgSFy~rL-fP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 85 KFR-NYFVSGVPGSFYGRL-FPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp HTT-SEEEEEEES-TTS---S-TT-EEEEEEES-TTB-S
T ss_pred CCc-eEEEEecCchhhhcc-CCCCceEEEEEechhhhcc
Confidence 111 2222 222 344 8999999999999999643
No 266
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=89.09 E-value=2.3 Score=44.43 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=75.7
Q ss_pred CCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHcC----C---------CceeecccCCC-CCCCCccce
Q 037675 265 IRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAARG----L---------FPLYLSLDHRF-PFYDNVFDL 329 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eRG----l---------i~~~~~~~e~L-Pf~d~sFDl 329 (418)
.|+||=+|.|.|--+..|.+.. +.-+ .-+|.++.|++++...- + +.++.+++..+ --..+.||.
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI-~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQI-TLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceE-EEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 5899999999999999999885 4433 23799999999877321 1 12223332221 234568999
Q ss_pred EEecCcCcCCCChh---HHHHHHHHhhccccCCcEEEEEe--cccCchhHHHHHHHHHHHcCcEEEEEE
Q 037675 330 VHASSGLDVGGQPE---KLEFLMFDFDRILRAGGLFWLDN--FYCANDEKKSALTRLIERFGYKKLKWV 393 (418)
Q Consensus 330 V~s~~~L~~~~~~~---~le~~L~Ei~RVLRPGG~~ii~~--~~~~~ee~~~~~~~l~~~~Gfk~l~W~ 393 (418)
|+... ..+-.+.- --..+..-..|-|+++|.+++.. ++...+-.+. +...++++||...-..
T Consensus 369 vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~-i~aTik~AG~~~~Pyh 435 (508)
T COG4262 369 VIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWR-IDATIKSAGYRVWPYH 435 (508)
T ss_pred EEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeee-ehhHHHhCcceeeeeE
Confidence 98642 11100000 01245566778899999998853 3433333222 3455788898765433
No 267
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.36 E-value=3.5 Score=41.76 Aligned_cols=143 Identities=13% Similarity=0.208 Sum_probs=83.6
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc-CCCceeecccCCCC---CCCCccceEEec---CcCcC
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR-GLFPLYLSLDHRFP---FYDNVFDLVHAS---SGLDV 338 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR-Gli~~~~~~~e~LP---f~d~sFDlV~s~---~~L~~ 338 (418)
.+++|+=||.|++...|...|..++ .++|+++..++.-+.+ ........+...+. +....+|+++.+ .-|..
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~-~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~ 82 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIV-FANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSI 82 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEE-EEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhh
Confidence 4899999999999999998898877 5788888766543332 21123333332221 111179999885 22331
Q ss_pred ------CC-ChhHHHHHHHHhhccccCCcEEEEEeccc---CchhHHHHHHHHHHHcCcEEEEEEEcccCC---C-Cccc
Q 037675 339 ------GG-QPEKLEFLMFDFDRILRAGGLFWLDNFYC---ANDEKKSALTRLIERFGYKKLKWVVGEKGE---T-GKSE 404 (418)
Q Consensus 339 ------~~-~~~~le~~L~Ei~RVLRPGG~~ii~~~~~---~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d---~-~~~e 404 (418)
.. .+..+-.-+.++-..++| -+|++..... ......+.+...++.+||. +.|.+..-.| + .|..
T Consensus 83 aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~-~~~~ilna~dyGvPQ~ReR 160 (328)
T COG0270 83 AGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG-VEFNILNAADYGVPQSRER 160 (328)
T ss_pred cCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc-chHheeeHHhcCCCCCccE
Confidence 11 222222445556666778 5566654311 1223456688889999998 6666644333 2 4555
Q ss_pred eEEEEEE
Q 037675 405 VYLSAVL 411 (418)
Q Consensus 405 ~~l~Ai~ 411 (418)
+|++++.
T Consensus 161 vfiig~~ 167 (328)
T COG0270 161 VFIVGFR 167 (328)
T ss_pred EEEEEec
Confidence 5665543
No 268
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=87.93 E-value=5.7 Score=39.16 Aligned_cols=99 Identities=19% Similarity=0.180 Sum_probs=53.7
Q ss_pred CCeEEEECCccChHHHHHhhc-CcEEEEeccCCC--HHhHHHHHHc--------CC-Cce-eecccCCCC--CCCCc-cc
Q 037675 265 IRIGFDIGGGSGTFAARMAER-NVTVITNTLNVD--APYSEFIAAR--------GL-FPL-YLSLDHRFP--FYDNV-FD 328 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s--~~~l~~a~eR--------Gl-i~~-~~~~~e~LP--f~d~s-FD 328 (418)
..+||++|.|+|--+...+.. +..++.. |.. ...++...+. |- +.+ ...|.++++ +.... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~lt--D~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLT--DLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccC--CchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 458999999999666555553 3333311 332 2223322221 21 111 112443332 22223 99
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY 368 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~ 368 (418)
+|+++.|+..-...+ .++.=+.-.|-.+|.+++....
T Consensus 165 lilasDvvy~~~~~e---~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 165 LILASDVVYEEESFE---GLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred EEEEeeeeecCCcch---hHHHHHHHHHhcCCeEEEEEec
Confidence 999999988766666 4455555567777766555443
No 269
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=87.38 E-value=3.2 Score=42.38 Aligned_cols=93 Identities=17% Similarity=0.186 Sum_probs=62.4
Q ss_pred eEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCC------CCC-CCCccceEEecCcCc
Q 037675 267 IGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHR------FPF-YDNVFDLVHASSGLD 337 (418)
Q Consensus 267 ~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~------LPf-~d~sFDlV~s~~~L~ 337 (418)
+|+=+|||. |.++..+++. |...+ +++|.++.-++.|++.+-........+. +.. ....+|+|+=...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~V-iv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVV-IVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceE-EEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 899999998 7777777765 54333 3469999999999996543333322221 011 1246999885332
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC 369 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~ 369 (418)
. ..++.+..+++||||.+.+...+.
T Consensus 248 ---~----~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 248 ---S----PPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ---C----HHHHHHHHHHhcCCCEEEEEeccC
Confidence 1 157889999999999998776643
No 270
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.22 E-value=3.5 Score=44.69 Aligned_cols=95 Identities=15% Similarity=0.186 Sum_probs=59.7
Q ss_pred CeEEEECCccCh-HHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccC----------CCC----------CC
Q 037675 266 RIGFDIGGGSGT-FAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDH----------RFP----------FY 323 (418)
Q Consensus 266 r~VLDvGCGtG~-faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e----------~LP----------f~ 323 (418)
.+|+=+|||.-+ .+...++. |..+ .++|.+++.++.+++-|..-...+..+ .+. +.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V--~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~ 243 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIV--RAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFA 243 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEE--EEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHH
Confidence 589999999854 44455544 7754 357999999999988775212121111 111 11
Q ss_pred C--CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 324 D--NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 324 d--~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
+ +.+|+|+..........+. .+..++.+.+||||.++..
T Consensus 244 ~~~~gaDVVIetag~pg~~aP~---lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 244 EQAKEVDIIITTALIPGKPAPK---LITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hccCCCCEEEECCCCCcccCcc---hHHHHHHHhcCCCCEEEEE
Confidence 1 4699999865443222221 3358999999999987554
No 271
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=86.77 E-value=6.9 Score=40.70 Aligned_cols=126 Identities=16% Similarity=0.110 Sum_probs=71.7
Q ss_pred ccCCCCCCeEEEECCccChHHHHHhhcCc------EEEEeccCCCH-HhHHHHHHcCCCcee-e--cccCCC--------
Q 037675 259 ALGSGGIRIGFDIGGGSGTFAARMAERNV------TVITNTLNVDA-PYSEFIAARGLFPLY-L--SLDHRF-------- 320 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGtG~faa~La~~gV------~vv~~alD~s~-~~l~~a~eRGli~~~-~--~~~e~L-------- 320 (418)
.+.+|. +||||-+-.|+=++.|.+... .++.+.+|... +|+.....|-..+.+ + .++..+
T Consensus 152 ~v~p~~--~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 152 GVKPGD--KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred ccCCCC--eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccC
Confidence 456774 899999999998877776522 45555555543 566554454221211 1 111111
Q ss_pred -CCCCCccceEEec------CcCc-------C-CCChh------HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHH
Q 037675 321 -PFYDNVFDLVHAS------SGLD-------V-GGQPE------KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALT 379 (418)
Q Consensus 321 -Pf~d~sFDlV~s~------~~L~-------~-~~~~~------~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~ 379 (418)
+.....||-|.|. .++. . |.... ---.+|..-.|.|||||.++.+.-.-..-+.+....
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~ 309 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQ 309 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHH
Confidence 2344579999873 1222 1 11100 011467778899999999988865444444445556
Q ss_pred HHHHHcC
Q 037675 380 RLIERFG 386 (418)
Q Consensus 380 ~l~~~~G 386 (418)
++++..|
T Consensus 310 ~~L~~~~ 316 (375)
T KOG2198|consen 310 EALQKVG 316 (375)
T ss_pred HHHHHhc
Confidence 6666553
No 272
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.46 E-value=3 Score=41.70 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=55.9
Q ss_pred CeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeec---ccCCCCCCCCccceEEecCcCcCCC
Q 037675 266 RIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLS---LDHRFPFYDNVFDLVHASSGLDVGG 340 (418)
Q Consensus 266 r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~---~~e~LPf~d~sFDlV~s~~~L~~~~ 340 (418)
.+||=+|||. |.++..+++. |...+ +++|.++..++.+++.|...++.. +..++.-..+.||+|+-.. .
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~V-i~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~-----G 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEI-VCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS-----G 244 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEE-EEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC-----C
Confidence 4788888764 5566666654 76322 246788888899988886332221 1111111123488887532 1
Q ss_pred ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 341 QPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.+ ..+.+..+.|||||.+++...
T Consensus 245 ~~----~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 HP----SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CH----HHHHHHHHHhhcCCEEEEEcc
Confidence 11 456688889999999977654
No 273
>PRK10742 putative methyltransferase; Provisional
Probab=84.83 E-value=4.1 Score=40.19 Aligned_cols=85 Identities=14% Similarity=0.016 Sum_probs=53.1
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhH---HHHHHc-------CC-----Cceeeccc
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYS---EFIAAR-------GL-----FPLYLSLD 317 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l---~~a~eR-------Gl-----i~~~~~~~ 317 (418)
.|.+.+.++.|..-+|||.=+|+|..+..++.+|..|+ .++-++... +...++ +. +.+++++.
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~--~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVR--MLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEE--EEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 44555678877655899999999999999999998754 467776433 322222 11 12333322
Q ss_pred C-CCCCCCCccceEEecCcCcCC
Q 037675 318 H-RFPFYDNVFDLVHASSGLDVG 339 (418)
Q Consensus 318 e-~LPf~d~sFDlV~s~~~L~~~ 339 (418)
. -|.-...+||+|+..=.+.+-
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCCC
Confidence 1 122223479999986656553
No 274
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=84.02 E-value=2 Score=39.49 Aligned_cols=48 Identities=17% Similarity=0.132 Sum_probs=28.8
Q ss_pred HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcC-cEEEEEE
Q 037675 344 KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFG-YKKLKWV 393 (418)
Q Consensus 344 ~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~G-fk~l~W~ 393 (418)
.+...+.|+.|+|||||.+++......... .....+.+.+| |....+.
T Consensus 34 ~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~--~~~~~~~~~~g~~~~~~~i 82 (231)
T PF01555_consen 34 WMEEWLKECYRVLKPGGSIFIFIDDREIAG--FLFELALEIFGGFFLRNEI 82 (231)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE-CCEECT--HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHhhcCCCeeEEEEecchhhhH--HHHHHHHHHhhhhheeccc
Confidence 356889999999999999877533221111 12444556666 7655433
No 275
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=83.80 E-value=5.9 Score=38.82 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=56.7
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccC-C----CCCCCCccceEE
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDH-R----FPFYDNVFDLVH 331 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e-~----LPf~d~sFDlV~ 331 (418)
.+.+| .+||-+|+|. |..+..+++. |+..+ +.++.++...+.+.+.|.. ....... . .....+.+|+|+
T Consensus 156 ~~~~g--~~vlI~g~g~vg~~~~~la~~~G~~~v-~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~vd~v~ 231 (334)
T cd08234 156 GIKPG--DSVLVFGAGPIGLLLAQLLKLNGASRV-TVAEPNEEKLELAKKLGAT-ETVDPSREDPEAQKEDNPYGFDVVI 231 (334)
T ss_pred CCCCC--CEEEEECCCHHHHHHHHHHHHcCCcEE-EEECCCHHHHHHHHHhCCe-EEecCCCCCHHHHHHhcCCCCcEEE
Confidence 45555 4788888652 5555555554 66522 2346677777777777762 2222111 1 012346799998
Q ss_pred ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
.... . . ..+.++.+.|+++|.++..+
T Consensus 232 ~~~~-----~-~---~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 232 EATG-----V-P---KTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred ECCC-----C-h---HHHHHHHHHHhcCCEEEEEe
Confidence 6311 1 1 56778999999999997654
No 276
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=83.58 E-value=7.2 Score=35.25 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=61.4
Q ss_pred eccCCCHHhHHHHHHc----CC---CceeecccCCCCC-CC-CccceEEecCcCcC------CCChhHHHHHHHHhhccc
Q 037675 292 NTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPF-YD-NVFDLVHASSGLDV------GGQPEKLEFLMFDFDRIL 356 (418)
Q Consensus 292 ~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf-~d-~sFDlV~s~~~L~~------~~~~~~le~~L~Ei~RVL 356 (418)
.+.|+-+..++..++| ++ +.++++.-+++.- -+ +.+|+|+-+.-.-+ ...++.--.++....+.|
T Consensus 3 yaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL 82 (140)
T PF06962_consen 3 YAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELL 82 (140)
T ss_dssp EEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHE
T ss_pred EEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhh
Confidence 3578888777655543 43 3445555555543 23 48999988633222 223444557899999999
Q ss_pred cCCcEEEEEecccCc--hhHHHHHHHHH---HHcCcEEEEEEEcccCCCCccceEEEEEEEc
Q 037675 357 RAGGLFWLDNFYCAN--DEKKSALTRLI---ERFGYKKLKWVVGEKGETGKSEVYLSAVLQK 413 (418)
Q Consensus 357 RPGG~~ii~~~~~~~--ee~~~~~~~l~---~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qK 413 (418)
+|||.+.|..+..+. .+..+.+...+ ..-.|..+++....+.+ ...+..+.||
T Consensus 83 ~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~~----~pp~l~~ieK 140 (140)
T PF06962_consen 83 KPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQKN----NPPLLVIIEK 140 (140)
T ss_dssp EEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-SS-------EEEEEEE
T ss_pred ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCCC----CCCEEEEEEC
Confidence 999999777664443 12222233333 34467777777665543 3333444555
No 277
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=81.73 E-value=8.5 Score=38.69 Aligned_cols=95 Identities=19% Similarity=0.056 Sum_probs=57.2
Q ss_pred cCCCCCCeEEEECCcc-ChHHHHHhhc-CcE-EEEeccCCCHHhHHHHHHcCCCceeecccCCC------CCCCCccceE
Q 037675 260 LGSGGIRIGFDIGGGS-GTFAARMAER-NVT-VITNTLNVDAPYSEFIAARGLFPLYLSLDHRF------PFYDNVFDLV 330 (418)
Q Consensus 260 l~~g~~r~VLDvGCGt-G~faa~La~~-gV~-vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L------Pf~d~sFDlV 330 (418)
+.+| .+||=.|+|. |..+..+++. |+. ++ ++|.++...+++++.|...++....+.+ -...+.+|+|
T Consensus 174 ~~~g--~~VlV~G~g~vG~~a~~~ak~~G~~~Vi--~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~v 249 (358)
T TIGR03451 174 VKRG--DSVAVIGCGGVGDAAIAGAALAGASKII--AVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVV 249 (358)
T ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHcCCCeEE--EEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEE
Confidence 4455 4788888754 5566666664 764 43 4678888888888877622222111110 0123458988
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+-.. ... ..+.+..+.||+||.+++...
T Consensus 250 id~~-----g~~----~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 250 IDAV-----GRP----ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EECC-----CCH----HHHHHHHHHhccCCEEEEECC
Confidence 7422 111 456677889999999977654
No 278
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=81.49 E-value=9.6 Score=39.87 Aligned_cols=100 Identities=17% Similarity=0.111 Sum_probs=62.6
Q ss_pred CeEEEECCccChHHHHHhhcC--cE--------------------------------------EEEeccCCCHHhHHHHH
Q 037675 266 RIGFDIGGGSGTFAARMAERN--VT--------------------------------------VITNTLNVDAPYSEFIA 305 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~g--V~--------------------------------------vv~~alD~s~~~l~~a~ 305 (418)
+..+|==||+|+++...+-.+ +- .+ .++|+++.+++.|+
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~-~G~Did~r~i~~Ak 271 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII-YGSDIDPRHIEGAK 271 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE-EEecCCHHHHHHHH
Confidence 589999999999985444332 11 12 35899999998765
Q ss_pred H----cCC---CceeecccCCCCCCCCccceEEec--CcCcCCCChhHHHHHHHH----hhccccCCcEEEEEec
Q 037675 306 A----RGL---FPLYLSLDHRFPFYDNVFDLVHAS--SGLDVGGQPEKLEFLMFD----FDRILRAGGLFWLDNF 367 (418)
Q Consensus 306 e----RGl---i~~~~~~~e~LPf~d~sFDlV~s~--~~L~~~~~~~~le~~L~E----i~RVLRPGG~~ii~~~ 367 (418)
. -|+ +.+..++...++-+-+.+|+|+|+ +-.- ......++.+..+ +.|.++-.+.++++..
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 4 354 445567888876544899999997 2222 2222334444444 4455566667766543
No 279
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=81.42 E-value=3.3 Score=35.01 Aligned_cols=85 Identities=20% Similarity=0.193 Sum_probs=57.5
Q ss_pred ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccC----CC--CCCCCccceEEecCcCcCCCChhHHH
Q 037675 274 GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDH----RF--PFYDNVFDLVHASSGLDVGGQPEKLE 346 (418)
Q Consensus 274 GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e----~L--Pf~d~sFDlV~s~~~L~~~~~~~~le 346 (418)
|.|.++..+++. |..++ ++|.++.-.+.+++-|....+..... .+ -+..+.+|+|+-.-. . .
T Consensus 1 ~vG~~a~q~ak~~G~~vi--~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~----~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVI--ATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----S----G 69 (130)
T ss_dssp HHHHHHHHHHHHTTSEEE--EEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----S----H
T ss_pred ChHHHHHHHHHHcCCEEE--EEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----c----H
Confidence 568888888875 76654 46888888999999885333322111 11 134468999985321 1 1
Q ss_pred HHHHHhhccccCCcEEEEEeccc
Q 037675 347 FLMFDFDRILRAGGLFWLDNFYC 369 (418)
Q Consensus 347 ~~L~Ei~RVLRPGG~~ii~~~~~ 369 (418)
..+.+...+|||||.+++.....
T Consensus 70 ~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHhccCCEEEEEEccC
Confidence 67889999999999998877654
No 280
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=80.95 E-value=6.3 Score=38.96 Aligned_cols=85 Identities=18% Similarity=0.251 Sum_probs=51.9
Q ss_pred CeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChh
Q 037675 266 RIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPE 343 (418)
Q Consensus 266 r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~ 343 (418)
.+||=+|||. |.++..+++. |..++ .++|..+..++.+.+.+.+. . .+. ..+.||+|+-.. ...
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v-~~~~~~~~rl~~a~~~~~i~---~-~~~---~~~g~Dvvid~~-----G~~- 211 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPP-AVWETNPRRRDGATGYEVLD---P-EKD---PRRDYRAIYDAS-----GDP- 211 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceE-EEeCCCHHHHHhhhhccccC---h-hhc---cCCCCCEEEECC-----CCH-
Confidence 3677778764 7777777764 76644 23577776666665433211 1 111 234589887532 111
Q ss_pred HHHHHHHHhhccccCCcEEEEEec
Q 037675 344 KLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 344 ~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
..+.+..+.|||||.+++...
T Consensus 212 ---~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 212 ---SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ---HHHHHHHHhhhcCcEEEEEee
Confidence 456788889999999987554
No 281
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=80.48 E-value=4.8 Score=43.08 Aligned_cols=102 Identities=18% Similarity=0.144 Sum_probs=64.1
Q ss_pred CCeEEEECCccC--hHHHHHhhcC-cEEEEeccCCCHHhHHHHHH--cC--CC--ceeec---ccCCCCCCCC-ccceEE
Q 037675 265 IRIGFDIGGGSG--TFAARMAERN-VTVITNTLNVDAPYSEFIAA--RG--LF--PLYLS---LDHRFPFYDN-VFDLVH 331 (418)
Q Consensus 265 ~r~VLDvGCGtG--~faa~La~~g-V~vv~~alD~s~~~l~~a~e--RG--li--~~~~~---~~e~LPf~d~-sFDlV~ 331 (418)
.+.++|+|-|.| .+++.+..+. ...+ .-+|.+.+|..++.. |+ -+ +.... .-+.+|-... .||+|+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~-~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREY-SLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhccccccee-EeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 457888887765 5666666554 3322 126999888876543 33 11 11111 2346676554 499999
Q ss_pred ecCcCcCCCChhHHHHHHHHh-hccccCCcEEEEEec
Q 037675 332 ASSGLDVGGQPEKLEFLMFDF-DRILRAGGLFWLDNF 367 (418)
Q Consensus 332 s~~~L~~~~~~~~le~~L~Ei-~RVLRPGG~~ii~~~ 367 (418)
+++.+++......-.++..+. .+..|+||++++...
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 999999877655444445554 456889999887665
No 282
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=80.30 E-value=8.1 Score=39.15 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=38.8
Q ss_pred cHHHHHHHHccCCCC---CCeEEEECCccChHHHHHh--hcCcEEEEeccCCCHHhHHHHHH----c-CC---Cceeec-
Q 037675 250 NDFLIDDVLALGSGG---IRIGFDIGGGSGTFAARMA--ERNVTVITNTLNVDAPYSEFIAA----R-GL---FPLYLS- 315 (418)
Q Consensus 250 y~~~I~~lL~l~~g~---~r~VLDvGCGtG~faa~La--~~gV~vv~~alD~s~~~l~~a~e----R-Gl---i~~~~~- 315 (418)
|-..|.++|...... .-++||||+|.-..=..|. ..|...+ |.|+++..++.|++ . ++ |.+...
T Consensus 85 Yi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fv--aTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 85 YIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFV--ATDIDPKSLESARENVERNPNLESRIELRKQK 162 (299)
T ss_dssp HHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEE--EEES-HHHHHHHHHHHHHT-T-TTTEEEEE--
T ss_pred HHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEE--EecCCHHHHHHHHHHHHhccccccceEEEEcC
Confidence 555678887643221 3479999999874322222 2365554 46888777766543 2 33 233321
Q ss_pred ----ccCCCCCCCCccceEEecCcCc
Q 037675 316 ----LDHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 316 ----~~e~LPf~d~sFDlV~s~~~L~ 337 (418)
....+--+++.||+..|+==|+
T Consensus 163 ~~~~i~~~i~~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 163 NPDNIFDGIIQPNERFDFTMCNPPFY 188 (299)
T ss_dssp ST-SSTTTSTT--S-EEEEEE-----
T ss_pred CccccchhhhcccceeeEEecCCccc
Confidence 1122223456899999975454
No 283
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=80.08 E-value=11 Score=37.55 Aligned_cols=92 Identities=17% Similarity=0.026 Sum_probs=56.2
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcC
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGL 336 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L 336 (418)
.+.+| .+||=.|+|. |.++..+++. |+.++ +++.++.-.+.+++.|... ..... . ...+.+|.++-....
T Consensus 162 ~~~~g--~~VlV~G~g~iG~~a~~~a~~~G~~vi--~~~~~~~~~~~a~~~Ga~~-vi~~~-~--~~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 162 SLPPG--GRLGLYGFGGSAHLTAQVALAQGATVH--VMTRGAAARRLALALGAAS-AGGAY-D--TPPEPLDAAILFAPA 233 (329)
T ss_pred CCCCC--CEEEEEcCCHHHHHHHHHHHHCCCeEE--EEeCChHHHHHHHHhCCce-ecccc-c--cCcccceEEEECCCc
Confidence 34555 4888888753 5555666654 77654 3566777788888888622 22211 1 112357876532211
Q ss_pred cCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
. ..+.+..++|||||++++...
T Consensus 234 ------~---~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ------G---GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ------H---HHHHHHHHhhCCCcEEEEEec
Confidence 1 457788899999999977654
No 284
>KOG2730 consensus Methylase [General function prediction only]
Probab=79.94 E-value=2 Score=41.92 Aligned_cols=120 Identities=17% Similarity=0.147 Sum_probs=69.9
Q ss_pred cCcccccccccccCCcHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-
Q 037675 235 DNPNENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL- 309 (418)
Q Consensus 235 w~~~e~~~W~~~~~~y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl- 309 (418)
|+.+|+..|..|..-..++-..+.... ....|+|.-||.|+.+..++.++..|++ +|+++.-+..|++. |+
T Consensus 67 ~md~e~wfsvTpe~ia~~iA~~v~~~~--~~~~iidaf~g~gGntiqfa~~~~~Vis--IdiDPikIa~AkhNaeiYGI~ 142 (263)
T KOG2730|consen 67 YMDREGWFSVTPEKIAEHIANRVVACM--NAEVIVDAFCGVGGNTIQFALQGPYVIA--IDIDPVKIACARHNAEVYGVP 142 (263)
T ss_pred eecccceEEeccHHHHHHHHHHHHHhc--CcchhhhhhhcCCchHHHHHHhCCeEEE--EeccHHHHHHHhccceeecCC
Confidence 555677777766433333333333322 2347999999999999999999888764 67777766666653 44
Q ss_pred --Cceeeccc----CCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcE
Q 037675 310 --FPLYLSLD----HRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGL 361 (418)
Q Consensus 310 --i~~~~~~~----e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~ 361 (418)
+.++.|+. ..+-+...-+|+|+.+- .|.-+.-+..-+.++.--++|-|.
T Consensus 143 ~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp---pwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 143 DRITFICGDFLDLASKLKADKIKYDCVFLSP---PWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred ceeEEEechHHHHHHHHhhhhheeeeeecCC---CCCCcchhhhhhhhhhhhcchhHH
Confidence 22333422 22333334466766432 455444444455566666666653
No 285
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=79.83 E-value=2 Score=41.21 Aligned_cols=97 Identities=9% Similarity=0.007 Sum_probs=45.1
Q ss_pred CeEEEECCccChHHHHHhhc------CcEEEEeccCCCHHhHHHHHHc----CCCceeecccCCCC-------C-CCCcc
Q 037675 266 RIGFDIGGGSGTFAARMAER------NVTVITNTLNVDAPYSEFIAAR----GLFPLYLSLDHRFP-------F-YDNVF 327 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~------gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~~~e~LP-------f-~d~sF 327 (418)
++|+++|.-.|+.+..+++. ...|+|+.+|+.+. ...+.+. ..+.++.|++.... . ....-
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~-~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH-NRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT---S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh-chHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 48999999999877665542 25566544443322 1222232 33466666443221 1 12234
Q ss_pred ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.+|+-... |...+ .-..|.-....++||+|+++.|.
T Consensus 113 vlVilDs~-H~~~h---vl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 113 VLVILDSS-HTHEH---VLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp EEEEESS-----SS---HHHHHHHHHHT--TT-EEEETSH
T ss_pred eEEEECCC-ccHHH---HHHHHHHhCccCCCCCEEEEEec
Confidence 45554322 11111 12556668899999999999886
No 286
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=79.27 E-value=13 Score=37.19 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=55.7
Q ss_pred CeEEEECCcc-ChHHHHHhhc-CcEEEEec-cCCCHHhHHHHHHcCCCceeecccCCC--CCCCCccceEEecCcCcCCC
Q 037675 266 RIGFDIGGGS-GTFAARMAER-NVTVITNT-LNVDAPYSEFIAARGLFPLYLSLDHRF--PFYDNVFDLVHASSGLDVGG 340 (418)
Q Consensus 266 r~VLDvGCGt-G~faa~La~~-gV~vv~~a-lD~s~~~l~~a~eRGli~~~~~~~e~L--Pf~d~sFDlV~s~~~L~~~~ 340 (418)
.+||=+|+|. |.++..+++. |..++.++ .+.++.-.+.+++.|.. .+....+.+ .-..+.||+|+-...
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~-~v~~~~~~~~~~~~~~~~d~vid~~g----- 247 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT-YVNSSKTPVAEVKLVGEFDLIIEATG----- 247 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE-EecCCccchhhhhhcCCCCEEEECcC-----
Confidence 4788889875 6677777664 77665433 23467777888887762 221111110 001245888876321
Q ss_pred ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 341 QPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.. ..+.+..++|||||.+++...
T Consensus 248 ~~----~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 VP----PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CH----HHHHHHHHHccCCcEEEEEec
Confidence 11 467788999999999876543
No 287
>PHA01634 hypothetical protein
Probab=79.25 E-value=3.5 Score=37.12 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=32.5
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA 306 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e 306 (418)
++|+|||++.|..+.+++-+|..-| ++++.++...+...+
T Consensus 30 KtV~dIGA~iGdSaiYF~l~GAK~V-va~E~~~kl~k~~ee 69 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLRGASFV-VQYEKEEKLRKKWEE 69 (156)
T ss_pred CEEEEecCCccchhhHHhhcCccEE-EEeccCHHHHHHHHH
Confidence 5899999999999999999986554 467888877766555
No 288
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=78.75 E-value=40 Score=33.29 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=59.9
Q ss_pred CeEEEECCccC-hHHHHHhhcCcEEEEeccCCCHHhHHH----HHHcCCC-ceee-cccCCCCC-CCCccceEEecCcCc
Q 037675 266 RIGFDIGGGSG-TFAARMAERNVTVITNTLNVDAPYSEF----IAARGLF-PLYL-SLDHRFPF-YDNVFDLVHASSGLD 337 (418)
Q Consensus 266 r~VLDvGCGtG-~faa~La~~gV~vv~~alD~s~~~l~~----a~eRGli-~~~~-~~~e~LPf-~d~sFDlV~s~~~L~ 337 (418)
++||=+|=.-- ++|.+|...+..++ ++|+++..+++ |.+.|+. ..++ +.-..||- .-+.||++++.
T Consensus 46 k~il~lGDDDLtSlA~al~~~~~~I~--VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TD---- 119 (243)
T PF01861_consen 46 KRILFLGDDDLTSLALALTGLPKRIT--VVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTD---- 119 (243)
T ss_dssp -EEEEES-TT-HHHHHHHHT--SEEE--EE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE-----
T ss_pred CEEEEEcCCcHHHHHHHhhCCCCeEE--EEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeC----
Confidence 58999986654 45666655543332 25999988865 4556762 2222 34444543 24899999984
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEecccCc--hhHHHHHHHHHHHcCcEE
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--DEKKSALTRLIERFGYKK 389 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--ee~~~~~~~l~~~~Gfk~ 389 (418)
+-...++++-++..-...||..|-..+-.+.... .+.+..+++.+.++|+-.
T Consensus 120 PPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i 173 (243)
T PF01861_consen 120 PPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVI 173 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCH
Confidence 2223468889999999999987733222333332 233345777778999864
No 289
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=78.50 E-value=10 Score=37.29 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=54.2
Q ss_pred CeEEEECCcc-ChHHHHHhh-cCc-EEEEeccCCCHHhHHHHHHcCCCceeecc---cCCCCCCCCccceEEecCcCcCC
Q 037675 266 RIGFDIGGGS-GTFAARMAE-RNV-TVITNTLNVDAPYSEFIAARGLFPLYLSL---DHRFPFYDNVFDLVHASSGLDVG 339 (418)
Q Consensus 266 r~VLDvGCGt-G~faa~La~-~gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~---~e~LPf~d~sFDlV~s~~~L~~~ 339 (418)
.+||-.|||. |..+..+++ .|+ .++ +++.++.+.+.+.+.|...++... ...+....+.+|+|+.....
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G~~~v~--~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~--- 241 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAGAAEIV--ATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA--- 241 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEE--EECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC---
Confidence 5788888765 556666665 477 443 357777777777776652222111 11222223458998863221
Q ss_pred CChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 340 GQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 340 ~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
...+.++.+.|+++|.++...
T Consensus 242 ------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 242 ------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ------HHHHHHHHHHHhcCCEEEEEe
Confidence 145678999999999987543
No 290
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=77.07 E-value=2.8 Score=43.79 Aligned_cols=47 Identities=19% Similarity=0.132 Sum_probs=40.8
Q ss_pred CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675 322 FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC 369 (418)
Q Consensus 322 f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~ 369 (418)
.++++||.++.+..+.+..+ +.+...+.++.|++||||++++.....
T Consensus 291 ~~~~s~~~~vL~D~~Dwm~~-~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 291 LPPGSFDRFVLSDHMDWMDP-EQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CCCCCeeEEEecchhhhCCH-HHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 46899999999999988755 678899999999999999998887643
No 291
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=75.66 E-value=23 Score=32.94 Aligned_cols=91 Identities=21% Similarity=0.186 Sum_probs=54.5
Q ss_pred CeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC-----CCCCCccceEEecCcCcC
Q 037675 266 RIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF-----PFYDNVFDLVHASSGLDV 338 (418)
Q Consensus 266 r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L-----Pf~d~sFDlV~s~~~L~~ 338 (418)
.+||..|+|. |..+..+++. |..++ +++.++...+.+.+.|....+....... ....+.+|+|+....
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g~~v~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~--- 210 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAGARVI--VTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVG--- 210 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEE--EEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCC---
Confidence 4899999985 6666666654 76654 3466666677776666422221110000 123467999986321
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.. ..+..+.+.|+++|.++....
T Consensus 211 --~~----~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 211 --GP----ETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred --CH----HHHHHHHHhcccCCEEEEEcc
Confidence 10 345677889999999876544
No 292
>PRK10458 DNA cytosine methylase; Provisional
Probab=75.42 E-value=97 Score=33.37 Aligned_cols=37 Identities=11% Similarity=-0.062 Sum_probs=30.2
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHH
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEF 303 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~ 303 (418)
-+++|+=||.|++...|...|..++ .++|+++...+.
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG~~~v-~a~Eid~~A~~T 125 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIGGQCV-FTSEWNKHAVRT 125 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcCCEEE-EEEechHHHHHH
Confidence 4899999999999999988898876 568887765543
No 293
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=75.11 E-value=15 Score=37.20 Aligned_cols=95 Identities=16% Similarity=0.089 Sum_probs=56.6
Q ss_pred cCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecccCC----C-CCCCCccceEE
Q 037675 260 LGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDHR----F-PFYDNVFDLVH 331 (418)
Q Consensus 260 l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~----L-Pf~d~sFDlV~ 331 (418)
+.+|+ +||=.|+|. |.++..+++. |. .++ ++|.++...+.+++-|...++....+. + ...++.+|+|+
T Consensus 189 i~~g~--~VlV~G~G~vG~~a~~lak~~G~~~Vi--~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vi 264 (371)
T cd08281 189 VRPGQ--SVAVVGLGGVGLSALLGAVAAGASQVV--AVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAF 264 (371)
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCcEE--EEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEE
Confidence 45553 677788764 5566666664 76 343 468888888888887763332211111 1 01123588887
Q ss_pred ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
-.. ... ..+.+..+.|++||.+++...
T Consensus 265 d~~-----G~~----~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 265 EMA-----GSV----PALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred ECC-----CCh----HHHHHHHHHHhcCCEEEEEcc
Confidence 532 111 456678889999999876543
No 294
>PLN02827 Alcohol dehydrogenase-like
Probab=74.69 E-value=17 Score=37.09 Aligned_cols=95 Identities=16% Similarity=0.138 Sum_probs=55.6
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeecccC---C----C-CCCCCccc
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDH---R----F-PFYDNVFD 328 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e---~----L-Pf~d~sFD 328 (418)
.+.+| .+||=.|+|. |.++..+++ .|+..+ +++|.++...+++++.|. ..+.+..+ . + ....+.+|
T Consensus 190 ~~~~g--~~VlV~G~G~vG~~~iqlak~~G~~~v-i~~~~~~~~~~~a~~lGa-~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 190 DVSKG--SSVVIFGLGTVGLSVAQGAKLRGASQI-IGVDINPEKAEKAKTFGV-TDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CCCCC--CEEEEECCCHHHHHHHHHHHHcCCCeE-EEECCCHHHHHHHHHcCC-cEEEcccccchHHHHHHHHHhCCCCC
Confidence 34555 4788888754 555566665 476422 246778888888888886 32222110 0 0 01122588
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCC-cEEEEEe
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAG-GLFWLDN 366 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPG-G~~ii~~ 366 (418)
+|+-.. ... ..+.+..+.||+| |.+++..
T Consensus 266 ~vid~~-----G~~----~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 266 YSFECV-----GDT----GIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred EEEECC-----CCh----HHHHHHHHhhccCCCEEEEEC
Confidence 887532 111 3566788899999 9987643
No 295
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=74.45 E-value=3 Score=45.03 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=34.7
Q ss_pred HHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH
Q 037675 254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA 306 (418)
Q Consensus 254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e 306 (418)
|.+...++.+ ..++|+=||||.++..++++--.|+ ++++++..++.|..
T Consensus 375 i~e~~~l~~~--k~llDv~CGTG~iglala~~~~~Vi--GvEi~~~aV~dA~~ 423 (534)
T KOG2187|consen 375 IGEWAGLPAD--KTLLDVCCGTGTIGLALARGVKRVI--GVEISPDAVEDAEK 423 (534)
T ss_pred HHHHhCCCCC--cEEEEEeecCCceehhhhcccccee--eeecChhhcchhhh
Confidence 4444456665 4899999999999999987754554 35777766665543
No 296
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=74.37 E-value=4 Score=39.06 Aligned_cols=89 Identities=18% Similarity=0.181 Sum_probs=56.0
Q ss_pred eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCC--ceeecccCCCCCCCCccceEEecC---cCc
Q 037675 267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLF--PLYLSLDHRFPFYDNVFDLVHASS---GLD 337 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli--~~~~~~~e~LPf~d~sFDlV~s~~---~L~ 337 (418)
++.|+|+|+|-++...++..-.|+ +++.++.....|.+. |.. .++.+++....| ..-|.|+|-. +|.
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rVi--AiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi 110 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVI--AIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALI 110 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEE--EEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhh
Confidence 799999999998877666643343 346666666666664 332 344567777666 5689999842 222
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEE
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFW 363 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~i 363 (418)
.- ++ -.++..+-..||-+|.++
T Consensus 111 ~E--~q--VpV~n~vleFLr~d~tii 132 (252)
T COG4076 111 EE--KQ--VPVINAVLEFLRYDPTII 132 (252)
T ss_pred cc--cc--cHHHHHHHHHhhcCCccc
Confidence 21 11 145556666778888763
No 297
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=74.31 E-value=2.2 Score=37.10 Aligned_cols=30 Identities=13% Similarity=0.188 Sum_probs=24.5
Q ss_pred CCeEEEECCccChHHHHHhhcCcEEEEeccCC
Q 037675 265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNV 296 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~ 296 (418)
...-.|+|||.|-+..-|.+.|....| +|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~G--iD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWG--IDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCccc--ccc
Confidence 457999999999999999888887653 564
No 298
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=73.26 E-value=21 Score=37.23 Aligned_cols=94 Identities=12% Similarity=0.035 Sum_probs=59.5
Q ss_pred eEEEECCccChHHHHHhhcCcEEEEeccCCC---HHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChh
Q 037675 267 IGFDIGGGSGTFAARMAERNVTVITNTLNVD---APYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPE 343 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s---~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~ 343 (418)
.||=+|=..|.++..|+..+++.++ |.. ....+.+...|+..-........+-.++.+|+|+. ..-....
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~~---ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~d~vl~----~~PK~~~ 119 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSIG---DSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLI----KVPKTLA 119 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCeee---hHHHHHHHHHHHHHHcCCCcccceeecccccccCCCCEEEE----EeCCCHH
Confidence 6899999999999999987776552 431 22333445556522111111112223445899884 3334556
Q ss_pred HHHHHHHHhhccccCCcEEEEEec
Q 037675 344 KLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 344 ~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.++..|..+.++|.||+.+++..-
T Consensus 120 ~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 120 LLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred HHHHHHHHHHhhCCCCCEEEEEEe
Confidence 678889999999999999765443
No 299
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=73.02 E-value=15 Score=35.62 Aligned_cols=89 Identities=19% Similarity=0.146 Sum_probs=54.6
Q ss_pred CeEEEECCcc-ChHHHHHhhc-CcE-EEEeccCCCHHhHHHHHHcCCCceeeccc---C---CCCCCCCccceEEecCcC
Q 037675 266 RIGFDIGGGS-GTFAARMAER-NVT-VITNTLNVDAPYSEFIAARGLFPLYLSLD---H---RFPFYDNVFDLVHASSGL 336 (418)
Q Consensus 266 r~VLDvGCGt-G~faa~La~~-gV~-vv~~alD~s~~~l~~a~eRGli~~~~~~~---e---~LPf~d~sFDlV~s~~~L 336 (418)
.+||=+|+|. |..+..+++. |+. ++ ++|.++.-.+.+++.|. ....... + ++ ...+.+|+|+-..
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi--~~~~~~~r~~~a~~~Ga-~~~i~~~~~~~~~~~~-~~~~g~d~vid~~-- 195 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVV--AADPSPDRRELALSFGA-TALAEPEVLAERQGGL-QNGRGVDVALEFS-- 195 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEE--EECCCHHHHHHHHHcCC-cEecCchhhHHHHHHH-hCCCCCCEEEECC--
Confidence 4788888764 5566666654 765 43 35778888888888776 2222110 0 11 1234588887521
Q ss_pred cCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
... ..+.+..+.|||||.+++...
T Consensus 196 ---G~~----~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 196 ---GAT----AAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ---CCh----HHHHHHHHHhcCCCEEEEecc
Confidence 111 456788899999999977654
No 300
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=72.61 E-value=39 Score=33.81 Aligned_cols=96 Identities=16% Similarity=0.071 Sum_probs=65.0
Q ss_pred CeEEEECCcc--ChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChh
Q 037675 266 RIGFDIGGGS--GTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPE 343 (418)
Q Consensus 266 r~VLDvGCGt--G~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~ 343 (418)
.+|+=+|.|- |+++..|++.|..+..++.|.+.+.++.+.+.|++.-...... --.....|+|+-+- +-.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~--~~~~~~aD~Vivav------Pi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGL--AEAAAEADLVIVAV------PIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchh--hhhcccCCEEEEec------cHH
Confidence 4677888876 6788999988866544578999999999998887433211110 11245689988642 224
Q ss_pred HHHHHHHHhhccccCCcEEEEEecccCc
Q 037675 344 KLEFLMFDFDRILRAGGLFWLDNFYCAN 371 (418)
Q Consensus 344 ~le~~L~Ei~RVLRPGG~~ii~~~~~~~ 371 (418)
....++.|+..-||||-. +.|.....
T Consensus 76 ~~~~~l~~l~~~l~~g~i--v~Dv~S~K 101 (279)
T COG0287 76 ATEEVLKELAPHLKKGAI--VTDVGSVK 101 (279)
T ss_pred HHHHHHHHhcccCCCCCE--EEeccccc
Confidence 456899999999999984 44554433
No 301
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=72.38 E-value=23 Score=34.58 Aligned_cols=95 Identities=16% Similarity=0.014 Sum_probs=56.5
Q ss_pred ccCCCCCCeEEEECCc-cChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC-CCCCccceEEecCc
Q 037675 259 ALGSGGIRIGFDIGGG-SGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP-FYDNVFDLVHASSG 335 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCG-tG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP-f~d~sFDlV~s~~~ 335 (418)
.+..+ .+||-+|+| .|..+..+++. |+.++ .++.++...+.+.+.|....+........ -..+.+|+|+....
T Consensus 159 ~~~~~--~~vlI~g~g~iG~~~~~~a~~~G~~v~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 234 (330)
T cd08245 159 GPRPG--ERVAVLGIGGLGHLAVQYARAMGFETV--AITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV 234 (330)
T ss_pred CCCCC--CEEEEECCCHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC
Confidence 34444 478888987 67666666655 77654 34667777777776664222221111100 02346898875321
Q ss_pred CcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
. ...+.++.+.|+++|.++...
T Consensus 235 -----~----~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 -----S----GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred -----c----HHHHHHHHHhcccCCEEEEEC
Confidence 1 145678899999999987653
No 302
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=72.14 E-value=17 Score=36.37 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=50.0
Q ss_pred CeEEEECCcc-ChHHHHHhhc--C-cEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675 266 RIGFDIGGGS-GTFAARMAER--N-VTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ 341 (418)
Q Consensus 266 r~VLDvGCGt-G~faa~La~~--g-V~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~ 341 (418)
.+||=+|||. |.++..++++ | ..++ ++|.++.-++.+++-+..-......+ +..+|+|+-.-- ...
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi--~~~~~~~k~~~a~~~~~~~~~~~~~~-----~~g~d~viD~~G--~~~- 234 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLV--VFGKHQEKLDLFSFADETYLIDDIPE-----DLAVDHAFECVG--GRG- 234 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEE--EEeCcHhHHHHHhhcCceeehhhhhh-----ccCCcEEEECCC--CCc-
Confidence 4899999875 5555565553 3 3343 35777777777765332111111111 124788874221 000
Q ss_pred hhHHHHHHHHhhccccCCcEEEEEe
Q 037675 342 PEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 342 ~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
....+.+..+.|||||.+++..
T Consensus 235 ---~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 235 ---SQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ---cHHHHHHHHHhCcCCcEEEEEe
Confidence 1256778889999999997655
No 303
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=71.90 E-value=24 Score=34.69 Aligned_cols=94 Identities=21% Similarity=0.217 Sum_probs=56.4
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeeccc----CCC--CCCCCccceE
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLD----HRF--PFYDNVFDLV 330 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~----e~L--Pf~d~sFDlV 330 (418)
.+.+|. +||-.|+|. |..+..+++. |+.++. +..++...+.+.+.|....+.... +.+ -...+.+|++
T Consensus 156 ~l~~g~--~vLI~g~g~vG~~a~~lA~~~g~~v~~--~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~v 231 (337)
T cd08261 156 GVTAGD--TVLVVGAGPIGLGVIQVAKARGARVIV--VDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVV 231 (337)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCeEEE--ECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEE
Confidence 455553 788888764 6677777765 777653 344567777777766422221111 111 0234568999
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
+.... . ...+.++.+.|+++|.++..
T Consensus 232 ld~~g-----~----~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 232 IDATG-----N----PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EECCC-----C----HHHHHHHHHHHhcCCEEEEE
Confidence 86321 1 14577899999999998754
No 304
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=71.88 E-value=4.5 Score=39.98 Aligned_cols=85 Identities=20% Similarity=0.176 Sum_probs=48.4
Q ss_pred cHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----CCCceeecccCCCC-C
Q 037675 250 NDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----GLFPLYLSLDHRFP-F 322 (418)
Q Consensus 250 y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----Gli~~~~~~~e~LP-f 322 (418)
++...+++...- +...+|+|+|||.=-++....... ... .+.|++..++++...- |. +.-....+.+. .
T Consensus 92 Ld~fY~~if~~~-~~p~sVlDigCGlNPlalp~~~~~~~a~Y--~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 92 LDEFYDEIFGRI-PPPDSVLDIGCGLNPLALPWMPEAPGATY--IAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDP 167 (251)
T ss_dssp HHHHHHHHCCCS----SEEEEET-TTCHHHHHTTTSSTT-EE--EEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSH
T ss_pred HHHHHHHHHhcC-CCCchhhhhhccCCceehhhcccCCCcEE--EEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccC
Confidence 344455543321 235799999999998887776653 444 4689999888875442 22 22222222222 3
Q ss_pred CCCccceEEecCcCcC
Q 037675 323 YDNVFDLVHASSGLDV 338 (418)
Q Consensus 323 ~d~sFDlV~s~~~L~~ 338 (418)
+....|+++..-+++-
T Consensus 168 ~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 168 PKEPADLALLLKTLPC 183 (251)
T ss_dssp TTSEESEEEEET-HHH
T ss_pred CCCCcchhhHHHHHHH
Confidence 5778999998766653
No 305
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=71.12 E-value=30 Score=34.25 Aligned_cols=95 Identities=20% Similarity=0.182 Sum_probs=54.3
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCC-------C--CCCCCcc
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHR-------F--PFYDNVF 327 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~-------L--Pf~d~sF 327 (418)
.+.+|+ +||=.|+|. |..+..+++. |+..+ ++++.++...+.+.+.|...++...... + ....+.|
T Consensus 159 ~~~~g~--~vlI~g~g~vG~~a~~lak~~G~~~v-~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T cd05285 159 GVRPGD--TVLVFGAGPIGLLTAAVAKAFGATKV-VVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGP 235 (343)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEE-EEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCC
Confidence 455553 677677654 5566666664 76522 2345566666766665642222211111 1 1234569
Q ss_pred ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
|+|+-...- . ..+.++.+.|+++|.++..
T Consensus 236 d~vld~~g~------~---~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 236 DVVIECTGA------E---SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CEEEECCCC------H---HHHHHHHHHhhcCCEEEEE
Confidence 999853211 1 3677899999999998754
No 306
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=70.27 E-value=27 Score=34.49 Aligned_cols=96 Identities=18% Similarity=0.047 Sum_probs=56.0
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcE-EEEeccCCCHHhHHHHHHcCCCceeecccC---CC-C-CCCCccceE
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVT-VITNTLNVDAPYSEFIAARGLFPLYLSLDH---RF-P-FYDNVFDLV 330 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~-vv~~alD~s~~~l~~a~eRGli~~~~~~~e---~L-P-f~d~sFDlV 330 (418)
.+.+| .+||=+|+|. |.++..+++. |.. ++ +++.++...+.+++-|...++....+ .+ . ...+.+|+|
T Consensus 160 ~~~~g--~~vlV~G~G~vG~~~~~~ak~~G~~~vi--~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~v 235 (339)
T cd08239 160 GVSGR--DTVLVVGAGPVGLGALMLARALGAEDVI--GVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVA 235 (339)
T ss_pred CCCCC--CEEEEECCCHHHHHHHHHHHHcCCCEEE--EECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEE
Confidence 34455 3777778753 4555556654 666 43 35777888888888776222221111 11 1 123468988
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+-.. .. . ..+.+..+.|+++|.+++...
T Consensus 236 id~~-----g~-~---~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 236 IECS-----GN-T---AARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred EECC-----CC-H---HHHHHHHHHhhcCCEEEEEcC
Confidence 8432 11 1 345677889999999976543
No 307
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=70.07 E-value=27 Score=33.97 Aligned_cols=94 Identities=11% Similarity=0.037 Sum_probs=57.2
Q ss_pred ccCCCCCCeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC-----CCCCCccceE
Q 037675 259 ALGSGGIRIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF-----PFYDNVFDLV 330 (418)
Q Consensus 259 ~l~~g~~r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L-----Pf~d~sFDlV 330 (418)
.+.+| .+||=.|+ |.|.++..+++. |+.++ +.+.++...+.+++.|...++....+.+ ....+.+|+|
T Consensus 140 ~~~~g--~~vlI~ga~g~vG~~aiqlA~~~G~~vi--~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~v 215 (329)
T cd08294 140 KPKAG--ETVVVNGAAGAVGSLVGQIAKIKGCKVI--GCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCY 215 (329)
T ss_pred CCCCC--CEEEEecCccHHHHHHHHHHHHcCCEEE--EEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEE
Confidence 35555 47777773 567777777765 87764 3455666777777777633322111111 1123568988
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
+-.. . . ..+.+..+.|+++|.++...
T Consensus 216 ld~~-----g---~--~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 216 FDNV-----G---G--EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EECC-----C---H--HHHHHHHHhhccCCEEEEEc
Confidence 8521 1 1 45678999999999987543
No 308
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=69.48 E-value=25 Score=34.52 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=52.5
Q ss_pred cCCCCCCeEEEECCc-cChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeeccc----C---CCCCCCCccce
Q 037675 260 LGSGGIRIGFDIGGG-SGTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLD----H---RFPFYDNVFDL 329 (418)
Q Consensus 260 l~~g~~r~VLDvGCG-tG~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~----e---~LPf~d~sFDl 329 (418)
+.+| .+||-.|+| .|..+..+++. |. .++ +++.++...+.+.+.|...++.... + ++ ...+.+|+
T Consensus 165 ~~~~--~~VlI~g~g~vg~~~iqlak~~g~~~v~--~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~ 239 (347)
T cd05278 165 IKPG--STVAVIGAGPVGLCAVAGARLLGAARII--AVDSNPERLDLAKEAGATDIINPKNGDIVEQILEL-TGGRGVDC 239 (347)
T ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHcCCCEEE--EEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHH-cCCCCCcE
Confidence 4444 377777765 35566666654 65 443 2355666666666655322221111 1 11 23367998
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
|+.... . . ..+.++.+.|+++|.++..
T Consensus 240 vld~~g-----~-~---~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 240 VIEAVG-----F-E---ETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEccC-----C-H---HHHHHHHHHhhcCCEEEEE
Confidence 885311 1 1 4677889999999998754
No 309
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=68.24 E-value=35 Score=32.46 Aligned_cols=94 Identities=23% Similarity=0.146 Sum_probs=55.0
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcE-EEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCc
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVT-VITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSG 335 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~-vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~ 335 (418)
.+.+| .+||=.|+|. |..+..+++. |+. ++ +++.+++..+.+.+.|.........+.. ...+.+|+|+....
T Consensus 94 ~~~~g--~~vlI~g~g~vg~~~i~~a~~~g~~~vi--~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~d~vl~~~~ 168 (277)
T cd08255 94 EPRLG--ERVAVVGLGLVGLLAAQLAKAAGAREVV--GVDPDAARRELAEALGPADPVAADTADE-IGGRGADVVIEASG 168 (277)
T ss_pred CCCCC--CEEEEECCCHHHHHHHHHHHHcCCCcEE--EECCCHHHHHHHHHcCCCccccccchhh-hcCCCCCEEEEccC
Confidence 34555 3677778764 5555555554 766 54 3577777778888877211111111111 13456898885321
Q ss_pred CcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
- . ..+.+..+.|+++|.++...
T Consensus 169 ~------~---~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 S------P---SALETALRLLRDRGRVVLVG 190 (277)
T ss_pred C------h---HHHHHHHHHhcCCcEEEEEe
Confidence 1 1 45678899999999986543
No 310
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=68.03 E-value=25 Score=38.92 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=37.1
Q ss_pred CccceEEecCcCcCCCChhH-HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675 325 NVFDLVHASSGLDVGGQPEK-LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL 390 (418)
Q Consensus 325 ~sFDlV~s~~~L~~~~~~~~-le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l 390 (418)
..||+++... |.+..+++. -+.++.+|.|.++|||++.- |+. ...+..-+..+||+.-
T Consensus 165 ~~~d~~~lD~-FsP~~np~~W~~~~~~~l~~~~~~~~~~~t---~t~----a~~vr~~l~~~GF~v~ 223 (662)
T PRK01747 165 ARADAWFLDG-FAPAKNPDMWSPNLFNALARLARPGATLAT---FTS----AGFVRRGLQEAGFTVR 223 (662)
T ss_pred ccccEEEeCC-CCCccChhhccHHHHHHHHHHhCCCCEEEE---eeh----HHHHHHHHHHcCCeee
Confidence 5699999743 333222211 13799999999999998832 222 2235666888899643
No 311
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=66.98 E-value=42 Score=33.08 Aligned_cols=95 Identities=9% Similarity=0.083 Sum_probs=55.4
Q ss_pred cCCCCCCeEEEECC--ccChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHH-cCCCceeecccCCC-----CCCCCccce
Q 037675 260 LGSGGIRIGFDIGG--GSGTFAARMAER-NV-TVITNTLNVDAPYSEFIAA-RGLFPLYLSLDHRF-----PFYDNVFDL 329 (418)
Q Consensus 260 l~~g~~r~VLDvGC--GtG~faa~La~~-gV-~vv~~alD~s~~~l~~a~e-RGli~~~~~~~e~L-----Pf~d~sFDl 329 (418)
+.+|...+||=.|+ |.|.++..+++. |. .++ +++.+++..+.+++ -|...++....+.+ ...++.+|+
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi--~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVV--GICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEE--EEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceE
Confidence 44443247888875 567788777765 76 554 34666666676665 56522222111111 012356999
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
|+.... . ..+.+..+.|++||.++.-.
T Consensus 228 vid~~g-----~-----~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 228 YFDNVG-----G-----EISDTVISQMNENSHIILCG 254 (345)
T ss_pred EEECCC-----c-----HHHHHHHHHhccCCEEEEEe
Confidence 885321 1 23467888999999987643
No 312
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=66.88 E-value=36 Score=33.84 Aligned_cols=96 Identities=17% Similarity=0.101 Sum_probs=55.7
Q ss_pred cCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC-----CC-CCCccceEE
Q 037675 260 LGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF-----PF-YDNVFDLVH 331 (418)
Q Consensus 260 l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L-----Pf-~d~sFDlV~ 331 (418)
+.+| .+||=.|+|. |..+..+++. |+..+ ++++.++...+.+++-|...++......+ .+ ..+.+|+|+
T Consensus 164 ~~~g--~~vlI~g~g~iG~~~~~lak~~G~~~v-~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vl 240 (351)
T cd08285 164 IKLG--DTVAVFGIGPVGLMAVAGARLRGAGRI-IAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVI 240 (351)
T ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHcCCCeE-EEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEE
Confidence 4455 4677778763 5555666654 76422 24577777777787777522221111111 11 234689888
Q ss_pred ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
-... . . ..+.+..+.|+++|+++....
T Consensus 241 d~~g-----~-~---~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 241 IAGG-----G-Q---DTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred ECCC-----C-H---HHHHHHHHHhhcCCEEEEecc
Confidence 5221 1 1 467799999999999875443
No 313
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=66.55 E-value=26 Score=34.82 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=54.7
Q ss_pred cCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeeccc---CCC--CCCCCccc-eEE
Q 037675 260 LGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLD---HRF--PFYDNVFD-LVH 331 (418)
Q Consensus 260 l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~---e~L--Pf~d~sFD-lV~ 331 (418)
+.+| .+||=.|+|. |.++..+++. |..++ ++++.++...+.+++-|...++.... +.+ -.....+| +|+
T Consensus 158 ~~~g--~~vlV~G~g~vG~~~~~~a~~~G~~~v-~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~ 234 (347)
T PRK10309 158 GCEG--KNVIIIGAGTIGLLAIQCAVALGAKSV-TAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLIL 234 (347)
T ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHcCCCeE-EEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEE
Confidence 3444 4788788765 5555666654 76533 24577777788887777522221110 000 01233566 554
Q ss_pred ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
- .... ...+.+..+.|||||.+++...
T Consensus 235 d-----~~G~----~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 235 E-----TAGV----PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred E-----CCCC----HHHHHHHHHHhhcCCEEEEEcc
Confidence 2 1111 1567788999999999987654
No 314
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=65.40 E-value=17 Score=39.44 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=56.9
Q ss_pred CeEEEECCccC-hHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeecccC----------C------------CC
Q 037675 266 RIGFDIGGGSG-TFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDH----------R------------FP 321 (418)
Q Consensus 266 r~VLDvGCGtG-~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e----------~------------LP 321 (418)
.+|+=+|+|.- ..++.+++ .|..++ ++|.+++.++.+++-|...+..+..+ . ++
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~--v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVR--AFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 58999999985 44444444 476543 46888887887777664221111100 0 11
Q ss_pred CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEE
Q 037675 322 FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFW 363 (418)
Q Consensus 322 f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~i 363 (418)
-.-..+|+|++.-.+.....+. -+..|+-+.+|||+.++
T Consensus 243 e~~~~~DIVI~TalipG~~aP~---Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAPK---LITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHhCCCCEEEECcccCCCCCCe---eehHHHHhhCCCCCEEE
Confidence 1135699998766444332222 46779999999999764
No 315
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=65.16 E-value=8.7 Score=37.89 Aligned_cols=106 Identities=17% Similarity=0.241 Sum_probs=59.3
Q ss_pred HHHHHccCCCCCCeEEEECCccChHHHHHhhcCc-----------EEEEeccCCCHHhHHHHHHcCCCceeecccCCC--
Q 037675 254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAERNV-----------TVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF-- 320 (418)
Q Consensus 254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV-----------~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L-- 320 (418)
|++-..+-.| +++|.|+-+-.|+|+..|.++=. .+| ++|+.+ | |=-.|++. +.+++...
T Consensus 32 ideef~i~~g-v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIV--aVDLQ~-M---aPI~GV~q-lq~DIT~~st 103 (294)
T KOG1099|consen 32 IDEEFQIFEG-VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIV--AVDLQP-M---APIEGVIQ-LQGDITSAST 103 (294)
T ss_pred hhhhhhHHhh-hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEE--EEeccc-C---CccCceEE-eecccCCHhH
Confidence 4444444455 67899999999999998876511 022 345422 1 11122211 12222111
Q ss_pred -----C-CCCCccceEEecCc-----CcCCC---ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 321 -----P-FYDNVFDLVHASSG-----LDVGG---QPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 321 -----P-f~d~sFDlV~s~~~-----L~~~~---~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
- |....-|+|+|.++ +|..+ ..+-+..+|.-..+||||||.|+---|
T Consensus 104 ae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 104 AEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred HHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 1 44557899999654 33222 123344556667899999999854433
No 316
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=64.94 E-value=44 Score=32.80 Aligned_cols=94 Identities=9% Similarity=0.052 Sum_probs=57.2
Q ss_pred ccCCCCCCeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeeccc-CCC-----CCCCCccce
Q 037675 259 ALGSGGIRIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLD-HRF-----PFYDNVFDL 329 (418)
Q Consensus 259 ~l~~g~~r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~-e~L-----Pf~d~sFDl 329 (418)
.+.+| .+||=.|. |.|.++..+++. |..++ +.+.++...+++++-|...++.... ..+ ....+.+|+
T Consensus 135 ~~~~g--~~VLI~ga~g~vG~~aiqlAk~~G~~Vi--~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdv 210 (325)
T TIGR02825 135 GVKGG--ETVMVNAAAGAVGSVVGQIAKLKGCKVV--GAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDC 210 (325)
T ss_pred CCCCC--CEEEEeCCccHHHHHHHHHHHHcCCEEE--EEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEE
Confidence 45555 37887874 568888888765 77664 3456677778887777622222111 011 112346888
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
|+-.. . . ..+.+..+.|+|||.++...
T Consensus 211 v~d~~-----G--~---~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 211 YFDNV-----G--G---EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEECC-----C--H---HHHHHHHHHhCcCcEEEEec
Confidence 87421 1 1 34568889999999997643
No 317
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=64.15 E-value=46 Score=34.42 Aligned_cols=105 Identities=18% Similarity=0.250 Sum_probs=59.0
Q ss_pred cCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeeccc-CCCC------CCCCccceE
Q 037675 260 LGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLD-HRFP------FYDNVFDLV 330 (418)
Q Consensus 260 l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~-e~LP------f~d~sFDlV 330 (418)
+..|+ +||=.|+|. |..+..+++. |+.++ ++.|.++..++.+++.|. ..+.... ..++ ...+.+|+|
T Consensus 183 ~~~g~--~VlV~G~G~iG~~aiqlAk~~Ga~~v-i~~d~~~~r~~~a~~~Ga-~~v~~~~~~~~~~~v~~~~~~~g~Dvv 258 (393)
T TIGR02819 183 VGPGS--TVYIAGAGPVGLAAAASAQLLGAAVV-IVGDLNPARLAQARSFGC-ETVDLSKDATLPEQIEQILGEPEVDCA 258 (393)
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCceE-EEeCCCHHHHHHHHHcCC-eEEecCCcccHHHHHHHHcCCCCCcEE
Confidence 45553 565577764 5555566654 76644 245777888888988886 3322111 0110 123468988
Q ss_pred EecCcCcC--C---CChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675 331 HASSGLDV--G---GQPEKLEFLMFDFDRILRAGGLFWLDNFY 368 (418)
Q Consensus 331 ~s~~~L~~--~---~~~~~le~~L~Ei~RVLRPGG~~ii~~~~ 368 (418)
+-...-.. + ....+....+.+..+++|+||.+++...+
T Consensus 259 id~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 259 VDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred EECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 85322110 0 00001114678888999999999876654
No 318
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=63.93 E-value=11 Score=36.82 Aligned_cols=85 Identities=20% Similarity=0.066 Sum_probs=43.7
Q ss_pred HHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHH---hHHHHHHc---C--C-------Cceeecc
Q 037675 252 FLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAP---YSEFIAAR---G--L-------FPLYLSL 316 (418)
Q Consensus 252 ~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~---~l~~a~eR---G--l-------i~~~~~~ 316 (418)
..|.+.+.++.|...+|||.=+|.|.-|..|+..|..|++ ++-|+. .++-..+| + . +.+++++
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~--lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTG--LERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEE--EE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEE--EECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 3455556777775568999999999999888888877653 566653 23222111 1 1 2344443
Q ss_pred -cCCCCCCCCccceEEecCcCcC
Q 037675 317 -DHRFPFYDNVFDLVHASSGLDV 338 (418)
Q Consensus 317 -~e~LPf~d~sFDlV~s~~~L~~ 338 (418)
.+-|+.++++||+|+..=+|.+
T Consensus 141 ~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 141 ALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCCHCCCHSS--SEEEE--S---
T ss_pred HHHHHhhcCCCCCEEEECCCCCC
Confidence 3345667899999998766665
No 319
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=63.04 E-value=52 Score=33.13 Aligned_cols=94 Identities=10% Similarity=0.111 Sum_probs=57.1
Q ss_pred ccCCCCCCeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHH-HcCCCceeecccC-CC-----CCCCCccc
Q 037675 259 ALGSGGIRIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIA-ARGLFPLYLSLDH-RF-----PFYDNVFD 328 (418)
Q Consensus 259 ~l~~g~~r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~-eRGli~~~~~~~e-~L-----Pf~d~sFD 328 (418)
.+.+| .+||=.|+ |.|.++..+++. |..++ +.+.++...+.++ +-|...++....+ .+ ....+.+|
T Consensus 155 ~~~~g--~~VlV~GaaG~vG~~aiqlAk~~G~~Vi--~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD 230 (348)
T PLN03154 155 SPKKG--DSVFVSAASGAVGQLVGQLAKLHGCYVV--GSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGID 230 (348)
T ss_pred CCCCC--CEEEEecCccHHHHHHHHHHHHcCCEEE--EEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcE
Confidence 35555 47888887 468888888775 87765 3466776777766 5665222211111 11 01124688
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
+|+-.- . . ..+.+..+.|++||.+++..
T Consensus 231 ~v~d~v-----G---~--~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 231 IYFDNV-----G---G--DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEECC-----C---H--HHHHHHHHHhccCCEEEEEC
Confidence 887421 1 1 35668889999999997654
No 320
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=62.29 E-value=28 Score=30.62 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=35.1
Q ss_pred CccceEEecCcCcCCCChhH-HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675 325 NVFDLVHASSGLDVGGQPEK-LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL 390 (418)
Q Consensus 325 ~sFDlV~s~~~L~~~~~~~~-le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l 390 (418)
..||+|+-.. |.+-.+++. -..++.+|.|.++|||.+. .++... .+...+..+||+.-
T Consensus 49 ~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~---Tys~a~----~Vr~~L~~aGF~v~ 107 (124)
T PF05430_consen 49 ARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLA---TYSSAG----AVRRALQQAGFEVE 107 (124)
T ss_dssp T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEE---ES--BH----HHHHHHHHCTEEEE
T ss_pred ccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEE---EeechH----HHHHHHHHcCCEEE
Confidence 6788887653 332222210 1279999999999999772 233222 26667899999854
No 321
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=60.17 E-value=69 Score=31.19 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=55.9
Q ss_pred HHHHHhhcC--cEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhcc
Q 037675 278 FAARMAERN--VTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRI 355 (418)
Q Consensus 278 faa~La~~g--V~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RV 355 (418)
+|.+|++.| +.+. +.|.++..++.+.+.|++.......+.+ ..+|+|+..- +...+..++.++...
T Consensus 1 ~A~aL~~~g~~~~v~--g~d~~~~~~~~a~~~g~~~~~~~~~~~~----~~~Dlvvlav------P~~~~~~~l~~~~~~ 68 (258)
T PF02153_consen 1 IALALRKAGPDVEVY--GYDRDPETLEAALELGIIDEASTDIEAV----EDADLVVLAV------PVSAIEDVLEEIAPY 68 (258)
T ss_dssp HHHHHHHTTTTSEEE--EE-SSHHHHHHHHHTTSSSEEESHHHHG----GCCSEEEE-S-------HHHHHHHHHHHHCG
T ss_pred ChHHHHhCCCCeEEE--EEeCCHHHHHHHHHCCCeeeccCCHhHh----cCCCEEEEcC------CHHHHHHHHHHhhhh
Confidence 578888887 6664 5899999999999999855443321211 2359888532 345677999999999
Q ss_pred ccCCcEEEEEecccCchhHHHHHHHHHH
Q 037675 356 LRAGGLFWLDNFYCANDEKKSALTRLIE 383 (418)
Q Consensus 356 LRPGG~~ii~~~~~~~ee~~~~~~~l~~ 383 (418)
+++|+.+ .|.........+.+.+...
T Consensus 69 ~~~~~iv--~Dv~SvK~~~~~~~~~~~~ 94 (258)
T PF02153_consen 69 LKPGAIV--TDVGSVKAPIVEAMERLLP 94 (258)
T ss_dssp S-TTSEE--EE--S-CHHHHHHHHHHHT
T ss_pred cCCCcEE--EEeCCCCHHHHHHHHHhcC
Confidence 9999843 4444443343333444333
No 322
>PLN02740 Alcohol dehydrogenase-like
Probab=59.92 E-value=43 Score=34.07 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=55.9
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeeccc------CCC-CCCCCccc
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLD------HRF-PFYDNVFD 328 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~------e~L-Pf~d~sFD 328 (418)
.+.+| .+||=+|+|. |..+..+++. |+ .++ ++|.+++.++.+++-|...++.... +.+ ....+.+|
T Consensus 195 ~~~~g--~~VlV~G~G~vG~~a~q~ak~~G~~~Vi--~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d 270 (381)
T PLN02740 195 NVQAG--SSVAIFGLGAVGLAVAEGARARGASKII--GVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVD 270 (381)
T ss_pred CCCCC--CEEEEECCCHHHHHHHHHHHHCCCCcEE--EEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCC
Confidence 35555 3788888764 5555666654 76 343 4677888888888877622221110 000 01122589
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCC-cEEEEEec
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAG-GLFWLDNF 367 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPG-G~~ii~~~ 367 (418)
+|+-.. ... ..+.+..+.+++| |.+++...
T Consensus 271 vvid~~-----G~~----~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 271 YSFECA-----GNV----EVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred EEEECC-----CCh----HHHHHHHHhhhcCCCEEEEEcc
Confidence 887532 111 4566777889997 98876554
No 323
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=59.60 E-value=50 Score=32.36 Aligned_cols=82 Identities=17% Similarity=-0.046 Sum_probs=52.4
Q ss_pred eEEEECCcc--ChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhH
Q 037675 267 IGFDIGGGS--GTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEK 344 (418)
Q Consensus 267 ~VLDvGCGt--G~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~ 344 (418)
+|.=||+|. |+++..|++.|..+. +.|.++..++.+.++|.+.......+. -...|+|+..- +...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~--~~d~~~~~~~~a~~~g~~~~~~~~~~~----~~~aDlVilav------p~~~ 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVY--GVSRRESTCERAIERGLVDEASTDLSL----LKDCDLVILAL------PIGL 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEE--EEECCHHHHHHHHHCCCcccccCCHhH----hcCCCEEEEcC------CHHH
Confidence 355578886 568888888887664 468888888888888763322211111 23468887642 2334
Q ss_pred HHHHHHHhhccccCCc
Q 037675 345 LEFLMFDFDRILRAGG 360 (418)
Q Consensus 345 le~~L~Ei~RVLRPGG 360 (418)
...++.++...++|+-
T Consensus 70 ~~~~~~~l~~~l~~~~ 85 (279)
T PRK07417 70 LLPPSEQLIPALPPEA 85 (279)
T ss_pred HHHHHHHHHHhCCCCc
Confidence 4567788888887764
No 324
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=59.52 E-value=16 Score=36.94 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=27.8
Q ss_pred ChhHHHHHHHHhhccccCCcEEEEEecccCchhH
Q 037675 341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEK 374 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~ 374 (418)
....++.+|..+..+|||||.++|-.|...++.+
T Consensus 211 El~~L~~~L~~~~~~L~~gGrl~visfHSlEDri 244 (296)
T PRK00050 211 ELEELERALEAALDLLKPGGRLAVISFHSLEDRI 244 (296)
T ss_pred hHHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHH
Confidence 3456889999999999999999888887665544
No 325
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=59.22 E-value=7.5 Score=39.04 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=52.4
Q ss_pred CeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHH------------HH----HHcCCCceeecccC--CCCCCC-C
Q 037675 266 RIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSE------------FI----AARGLFPLYLSLDH--RFPFYD-N 325 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~------------~a----~eRGli~~~~~~~e--~LPf~d-~ 325 (418)
.+|||+|||.|-.+......+ +.+. ..|.+...++ .. ...+..+....... .+-+-. -
T Consensus 118 k~vLELgCg~~Lp~i~~~~~~~~~~~--fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~ 195 (282)
T KOG2920|consen 118 KRVLELGCGAALPGIFAFVKGAVSVH--FQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERT 195 (282)
T ss_pred ceeEecCCcccccchhhhhhccceee--eEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcccc
Confidence 589999999998776666555 3332 2344433331 00 11111111111000 111111 2
Q ss_pred ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
.||+|.++-++-....... .+..+..+.++++|.+++..
T Consensus 196 ~ydlIlsSetiy~~~~~~~--~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 196 HYDLILSSETIYSIDSLAV--LYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred chhhhhhhhhhhCcchhhh--hHhhhhhhcCCccchhhhhh
Confidence 7899998877665544432 22778888999999886654
No 326
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=57.46 E-value=62 Score=31.99 Aligned_cols=90 Identities=17% Similarity=0.086 Sum_probs=51.6
Q ss_pred eEEEECCc-cChHHHHHhh-cCcE-EEEeccCCCHHhHHHHHHcCCCceeeccc----CCC--CCCCCccceEEecCcCc
Q 037675 267 IGFDIGGG-SGTFAARMAE-RNVT-VITNTLNVDAPYSEFIAARGLFPLYLSLD----HRF--PFYDNVFDLVHASSGLD 337 (418)
Q Consensus 267 ~VLDvGCG-tG~faa~La~-~gV~-vv~~alD~s~~~l~~a~eRGli~~~~~~~----e~L--Pf~d~sFDlV~s~~~L~ 337 (418)
+||-.|+| +|..+..+++ +|+. ++ +++.++...+.+.+.|...++.... +.+ ....+.+|+|+-...
T Consensus 164 ~vlI~~~g~vg~~a~~la~~~G~~~v~--~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~g-- 239 (340)
T TIGR00692 164 SVLVTGAGPIGLMAIAVAKASGAYPVI--VSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSG-- 239 (340)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEE--EECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECCC--
Confidence 56656765 3555555665 4765 43 2466777777777767522221111 111 123456899986311
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
. . ..+.++.+.|+++|.++....
T Consensus 240 ---~-~---~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 240 ---A-P---KALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred ---C-H---HHHHHHHHhhcCCCEEEEEcc
Confidence 1 1 457799999999999876543
No 327
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=57.38 E-value=66 Score=32.41 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=55.2
Q ss_pred cCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC-----CCCCCccceEEe
Q 037675 260 LGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF-----PFYDNVFDLVHA 332 (418)
Q Consensus 260 l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L-----Pf~d~sFDlV~s 332 (418)
+.+| .+||=.|+|. |..+..+++. |+..+ ++.+.++...+.+.+.|...++....+.+ ....+.+|+|+-
T Consensus 184 ~~~g--~~vlI~g~g~vG~~~~~la~~~G~~~v-~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld 260 (365)
T cd08278 184 PRPG--SSIAVFGAGAVGLAAVMAAKIAGCTTI-IAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALD 260 (365)
T ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHcCCCeE-EEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEE
Confidence 4444 4788778754 5555666654 76422 34677777777777777522222111110 011346898885
Q ss_pred cCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 333 SSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 333 ~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
..- . . ..+.++.+.|+++|.++..+
T Consensus 261 ~~g-----~-~---~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 261 TTG-----V-P---AVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCC-----C-c---HHHHHHHHHhccCCEEEEeC
Confidence 321 1 1 45679999999999987654
No 328
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=56.70 E-value=64 Score=32.37 Aligned_cols=94 Identities=16% Similarity=0.079 Sum_probs=53.4
Q ss_pred cCCCCCCeEEEECCc-cChHHHHHhhc-CcE-EEEeccCCCHHhHHHHHHcCCCceeeccc----CCC-C-CCCCccceE
Q 037675 260 LGSGGIRIGFDIGGG-SGTFAARMAER-NVT-VITNTLNVDAPYSEFIAARGLFPLYLSLD----HRF-P-FYDNVFDLV 330 (418)
Q Consensus 260 l~~g~~r~VLDvGCG-tG~faa~La~~-gV~-vv~~alD~s~~~l~~a~eRGli~~~~~~~----e~L-P-f~d~sFDlV 330 (418)
+.+| .+||-.|+| .|..+..+++. |+. ++ .++.++...+.+.+-|....+.... +++ . .+.+.+|++
T Consensus 180 ~~~g--~~vLI~g~g~vG~a~i~lak~~G~~~Vi--~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~v 255 (363)
T cd08279 180 VRPG--DTVAVIGCGGVGLNAIQGARIAGASRII--AVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYA 255 (363)
T ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHcCCCcEE--EEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEE
Confidence 4444 367777875 35555556554 765 43 3455666667776666522221111 111 1 124568988
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
+.... . . ..+.++.|.|+++|.++..+
T Consensus 256 ld~~~-----~-~---~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 256 FEAVG-----R-A---ATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred EEcCC-----C-h---HHHHHHHHHhhcCCeEEEEe
Confidence 75221 1 1 45679999999999987643
No 329
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=56.27 E-value=13 Score=37.58 Aligned_cols=59 Identities=19% Similarity=0.406 Sum_probs=40.8
Q ss_pred CCCccceEEecCc-CcCCCChhHHHHHHHHhhccccCCcEEEEEec-ccC---chh---HHHHHHHHHHHcCcEEE
Q 037675 323 YDNVFDLVHASSG-LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF-YCA---NDE---KKSALTRLIERFGYKKL 390 (418)
Q Consensus 323 ~d~sFDlV~s~~~-L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~-~~~---~ee---~~~~~~~l~~~~Gfk~l 390 (418)
+.+-||+|+.+.. .|... + ++.++++|||.+++... +.. .++ ..+.+.++++.+||+..
T Consensus 219 y~~~Fd~ifvs~s~vh~L~-p--------~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 219 YQNFFDLIFVSCSMVHFLK-P--------ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred hcCCCCEEEEhhhhHhhcc-h--------HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 4677999998754 43332 1 57889999999988774 221 222 23568889999999865
No 330
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=56.12 E-value=12 Score=40.11 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=28.0
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA 306 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e 306 (418)
--|||||.|||-++......|..-+ +++++-.+|...|++
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~v-tA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSV-TACEVFKPMVDLARK 107 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeE-EeehhhchHHHHHHH
Confidence 3699999999998876666664433 456777777765543
No 331
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=55.51 E-value=99 Score=30.04 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=53.7
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcC
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGL 336 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L 336 (418)
.+..| .+||=.|+|. |..+..+++ +|+.++ +++.++...+++++-|. ....... . ....+.+|+|+-..
T Consensus 152 ~~~~g--~~vlV~g~g~vg~~~~q~a~~~G~~vi--~~~~~~~~~~~~~~~g~-~~~~~~~-~-~~~~~~~d~vid~~-- 222 (319)
T cd08242 152 PITPG--DKVAVLGDGKLGLLIAQVLALTGPDVV--LVGRHSEKLALARRLGV-ETVLPDE-A-ESEGGGFDVVVEAT-- 222 (319)
T ss_pred CCCCC--CEEEEECCCHHHHHHHHHHHHcCCeEE--EEcCCHHHHHHHHHcCC-cEEeCcc-c-cccCCCCCEEEECC--
Confidence 34555 4677777542 334444444 487754 35666778888887665 3222211 1 13456799888631
Q ss_pred cCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 337 DVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
.. +..+....+.|+++|.+++.
T Consensus 223 ---g~----~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 223 ---GS----PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ---CC----hHHHHHHHHHhhcCCEEEEE
Confidence 11 14566888899999998763
No 332
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=55.16 E-value=60 Score=32.13 Aligned_cols=94 Identities=11% Similarity=0.109 Sum_probs=56.1
Q ss_pred ccCCCCCCeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHH-cCCCceeecccC-CC-----CCCCCccc
Q 037675 259 ALGSGGIRIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAA-RGLFPLYLSLDH-RF-----PFYDNVFD 328 (418)
Q Consensus 259 ~l~~g~~r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~e-RGli~~~~~~~e-~L-----Pf~d~sFD 328 (418)
.+.+| .+||=.|+ |.|.++..+++. |+.++. .+.++...+.+++ -|...++....+ .+ ....+.+|
T Consensus 148 ~~~~g--~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~--~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd 223 (338)
T cd08295 148 KPKKG--ETVFVSAASGAVGQLVGQLAKLKGCYVVG--SAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGID 223 (338)
T ss_pred CCCCC--CEEEEecCccHHHHHHHHHHHHcCCEEEE--EeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcE
Confidence 45555 47888886 567777777765 877653 4555666777766 565222221110 10 01125688
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
+|+-.. . . ..+.+..+.|+++|.++...
T Consensus 224 ~v~d~~-----g---~--~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 224 IYFDNV-----G---G--KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEEECC-----C---H--HHHHHHHHHhccCcEEEEec
Confidence 887521 1 1 45678899999999987543
No 333
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=54.94 E-value=84 Score=31.65 Aligned_cols=96 Identities=17% Similarity=0.116 Sum_probs=54.7
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeeccc------CCC-CCCCCccc
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLD------HRF-PFYDNVFD 328 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~------e~L-Pf~d~sFD 328 (418)
.+.+|+ +||=+|+|. |.++..+++. |+ .++ +++.++...+++.+-|...++.... +.+ ....+.+|
T Consensus 181 ~~~~g~--~vlV~G~g~vG~~~~~~a~~~G~~~Vi--~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d 256 (365)
T cd08277 181 KVEPGS--TVAVFGLGAVGLSAIMGAKIAGASRII--GVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVD 256 (365)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEE--EEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCC
Confidence 345553 777778753 4555556654 76 343 4577777888887777522221110 000 01124689
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCC-cEEEEEec
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAG-GLFWLDNF 367 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPG-G~~ii~~~ 367 (418)
+|+-.. .. . ..+.+..+.|||+ |.+++...
T Consensus 257 ~vid~~-----g~-~---~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 257 YSFECT-----GN-A---DLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred EEEECC-----CC-h---HHHHHHHHhcccCCCEEEEEcC
Confidence 888421 11 1 4567888899986 98876544
No 334
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=54.88 E-value=83 Score=31.36 Aligned_cols=90 Identities=21% Similarity=0.148 Sum_probs=50.7
Q ss_pred CeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecccCCCC---------CCCCccceEEec
Q 037675 266 RIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP---------FYDNVFDLVHAS 333 (418)
Q Consensus 266 r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP---------f~d~sFDlV~s~ 333 (418)
.+||=.|+|. |..+..+++. |+ .++ +++.++...+.+.+-|...++.......+ ...+.+|+|+-.
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~G~~~v~--~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~ 256 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLAGARRVI--VIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA 256 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEE--EEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence 3677677643 4444555554 77 654 34666766777776665222211111110 123468988853
Q ss_pred CcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
.. . . ..+.+..+.|+++|.++...
T Consensus 257 ~g-----~-~---~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 257 SG-----H-P---AAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CC-----C-h---HHHHHHHHHhccCCEEEEEc
Confidence 11 1 1 45678889999999997643
No 335
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=54.17 E-value=1.6e+02 Score=26.15 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=52.5
Q ss_pred HHHHHhhcCcEEEEeccCCCHH-hHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccc
Q 037675 278 FAARMAERNVTVITNTLNVDAP-YSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRIL 356 (418)
Q Consensus 278 faa~La~~gV~vv~~alD~s~~-~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVL 356 (418)
++..|...|+.++..+.+..++ .++.+.+.+ .|+|..+....+. ...++.++.++.+..
T Consensus 23 v~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~------------------~d~V~lS~~~~~~--~~~~~~~~~~L~~~~ 82 (137)
T PRK02261 23 LDRALTEAGFEVINLGVMTSQEEFIDAAIETD------------------ADAILVSSLYGHG--EIDCRGLREKCIEAG 82 (137)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC------------------CCEEEEcCccccC--HHHHHHHHHHHHhcC
Confidence 5566667789888777888754 445555543 3555544433322 233455665665553
Q ss_pred cCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675 357 RAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL 390 (418)
Q Consensus 357 RPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l 390 (418)
-++=.+++.+.-...+...++..+.++++||..+
T Consensus 83 ~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~v 116 (137)
T PRK02261 83 LGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRV 116 (137)
T ss_pred CCCCeEEEECCCCCCccChHHHHHHHHHcCCCEE
Confidence 3333345544433344444556677888898765
No 336
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=53.48 E-value=24 Score=32.28 Aligned_cols=51 Identities=29% Similarity=0.373 Sum_probs=35.7
Q ss_pred HHHHHHHcc--CCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH
Q 037675 252 FLIDDVLAL--GSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA 306 (418)
Q Consensus 252 ~~I~~lL~l--~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e 306 (418)
.++..+|.. .+| ..|||-=||+|+.+.+-.+.|-..+ ++|+++...+.|.+
T Consensus 179 ~l~~~lI~~~t~~g--diVlDpF~GSGTT~~aa~~l~R~~i--g~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKASTNPG--DIVLDPFAGSGTTAVAAEELGRRYI--GIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS-TT---EEEETT-TTTHHHHHHHHTT-EEE--EEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhccc--eeeehhhhccChHHHHHHHcCCeEE--EEeCCHHHHHHhcC
Confidence 356666654 445 4899999999999888777776654 47999988887764
No 337
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=53.19 E-value=13 Score=37.80 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=58.1
Q ss_pred CCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHH--c----CC----CceeecccCC-C-CCCCCccceE
Q 037675 264 GIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAA--R----GL----FPLYLSLDHR-F-PFYDNVFDLV 330 (418)
Q Consensus 264 ~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~e--R----Gl----i~~~~~~~e~-L-Pf~d~sFDlV 330 (418)
..++||=||-|-|++...-.++. |.-+ .-+|++.+.++..+. + |. +.+..++.-. + -...++||+|
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i-~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENI-LLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccce-eeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 35689999999999887666652 2222 114666555543222 2 11 2233332111 1 1247899999
Q ss_pred EecCcCcCCCChh--HHHHHHHHhhccccCCcEEEEEe
Q 037675 331 HASSGLDVGGQPE--KLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 331 ~s~~~L~~~~~~~--~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
+.... ....+.+ -.+.++..+.+.|||||++++-.
T Consensus 200 i~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 97321 1111112 24577888999999999986654
No 338
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=52.97 E-value=87 Score=31.28 Aligned_cols=94 Identities=18% Similarity=0.265 Sum_probs=54.6
Q ss_pred cCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccC----CC----C--CCCCcc
Q 037675 260 LGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDH----RF----P--FYDNVF 327 (418)
Q Consensus 260 l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e----~L----P--f~d~sF 327 (418)
+.+| .+||=+|+|. |..+..+++. |+.++ +++.++..++++.+.|. .......+ .+ . ...+.+
T Consensus 164 ~~~g--~~VlV~G~G~vG~~a~~~a~~~G~~vi--~~~~~~~~~~~~~~~Ga-~~~i~~~~~~~~~~~~~~~~~t~~~g~ 238 (349)
T TIGR03201 164 LKKG--DLVIVIGAGGVGGYMVQTAKAMGAAVV--AIDIDPEKLEMMKGFGA-DLTLNPKDKSAREVKKLIKAFAKARGL 238 (349)
T ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHcCCeEE--EEcCCHHHHHHHHHhCC-ceEecCccccHHHHHHHHHhhcccCCC
Confidence 4455 4899999865 5666666654 77654 46778888888888775 22221100 00 0 112234
Q ss_pred c----eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 328 D----LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 328 D----lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
| .|+- ..... ..+....+.||+||.+++...
T Consensus 239 d~~~d~v~d-----~~g~~----~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 239 RSTGWKIFE-----CSGSK----PGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred CCCcCEEEE-----CCCCh----HHHHHHHHHHhcCCeEEEECc
Confidence 4 4441 11111 455677889999999977654
No 339
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=52.80 E-value=72 Score=31.52 Aligned_cols=90 Identities=18% Similarity=0.098 Sum_probs=50.9
Q ss_pred CeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecccCCCC-----CCCCccceEEecCcCc
Q 037675 266 RIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP-----FYDNVFDLVHASSGLD 337 (418)
Q Consensus 266 r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP-----f~d~sFDlV~s~~~L~ 337 (418)
.+||-.|+|. |..+..+++. |. .++. ++.++.....+.+-|...++......++ ...+.+|+|+....
T Consensus 165 ~~vlV~g~g~vg~~~~~la~~~G~~~v~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g-- 240 (341)
T cd05281 165 KSVLITGCGPIGLMAIAVAKAAGASLVIA--SDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSG-- 240 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEE--ECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCC--
Confidence 4666677653 5566666654 76 4542 3556666666666665222211111110 12356899885321
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
. . ..+.++.+.|+++|.++..+
T Consensus 241 ---~-~---~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 241 ---N-P---KAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred ---C-H---HHHHHHHHHhccCCEEEEEc
Confidence 1 1 45678899999999987653
No 340
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=52.76 E-value=74 Score=31.92 Aligned_cols=90 Identities=17% Similarity=0.071 Sum_probs=50.5
Q ss_pred CeEEEECCc-cChHHHHHhhc-CcE-EEEeccCCCHHhHHHHHHcCCCceeecccCCC------CCCCCccceEEecCcC
Q 037675 266 RIGFDIGGG-SGTFAARMAER-NVT-VITNTLNVDAPYSEFIAARGLFPLYLSLDHRF------PFYDNVFDLVHASSGL 336 (418)
Q Consensus 266 r~VLDvGCG-tG~faa~La~~-gV~-vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L------Pf~d~sFDlV~s~~~L 336 (418)
.+||=.|+| .|..+..+++. |+. ++ .++.++...+++.+.|...++......+ -..++.||+|+..-
T Consensus 189 ~~VlI~g~g~vG~~~~~lak~~G~~~vi--~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~v-- 264 (367)
T cd08263 189 ETVAVIGVGGVGSSAIQLAKAFGASPII--AVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEAL-- 264 (367)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEE--EEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEeC--
Confidence 356655654 34555555554 766 43 3456666777776666522222111111 12346699998531
Q ss_pred cCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
.. . ..+.+..+.|+++|.++...
T Consensus 265 ---g~-~---~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 265 ---GK-P---ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred ---CC-H---HHHHHHHHHHhcCCEEEEEc
Confidence 11 1 25678899999999987543
No 341
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=51.88 E-value=1e+02 Score=31.20 Aligned_cols=96 Identities=16% Similarity=0.100 Sum_probs=56.4
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecc--c----CCC-CCCCCccc
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSL--D----HRF-PFYDNVFD 328 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~--~----e~L-Pf~d~sFD 328 (418)
.+..| .+||=+|+|. |.++..+++. |. .++ ++|.++...+.+.+.|....+... . +.+ ....+.+|
T Consensus 182 ~~~~g--~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi--~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d 257 (368)
T TIGR02818 182 KVEEG--DTVAVFGLGGIGLSVIQGARMAKASRII--AIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVD 257 (368)
T ss_pred CCCCC--CEEEEECCCHHHHHHHHHHHHcCCCeEE--EEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCC
Confidence 34555 3788888864 5566666654 76 453 468888888888887762222111 0 000 01123578
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCC-cEEEEEec
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAG-GLFWLDNF 367 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPG-G~~ii~~~ 367 (418)
+|+-.. ... ..+.+..+.+|+| |.+++...
T Consensus 258 ~vid~~-----G~~----~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 258 YSFECI-----GNV----NVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred EEEECC-----CCH----HHHHHHHHHhhcCCCeEEEEec
Confidence 887531 111 4566788899997 98876554
No 342
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=51.25 E-value=42 Score=34.27 Aligned_cols=88 Identities=23% Similarity=0.301 Sum_probs=50.2
Q ss_pred HHHHHHc-cCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccce
Q 037675 253 LIDDVLA-LGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDL 329 (418)
Q Consensus 253 ~I~~lL~-l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDl 329 (418)
++++++. +......+.+|.=-|.|+.+..+.++ +..+ +++|-++.+++.+.++-- +| ++.|.+
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~l--i~~DrD~~a~~~a~~~l~-----------~~-~~r~~~ 73 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRL--IGIDRDPEALERAKERLK-----------KF-DDRFIF 73 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EE--EEEES-HHHHHHHHCCTC-----------CC-CTTEEE
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeE--EEecCCHHHHHHHHHHHh-----------hc-cceEEE
Confidence 4455544 22222348999999999999999986 4444 458999999988877632 12 455666
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEE
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLF 362 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ 362 (418)
++... .++..++.+...+-+.+|.+
T Consensus 74 ~~~~F--------~~l~~~l~~~~~~~~~dgiL 98 (310)
T PF01795_consen 74 IHGNF--------SNLDEYLKELNGINKVDGIL 98 (310)
T ss_dssp EES-G--------GGHHHHHHHTTTTS-EEEEE
T ss_pred EeccH--------HHHHHHHHHccCCCccCEEE
Confidence 66532 23334555543444555644
No 343
>PRK10083 putative oxidoreductase; Provisional
Probab=50.72 E-value=69 Score=31.43 Aligned_cols=95 Identities=9% Similarity=0.017 Sum_probs=53.5
Q ss_pred cCCCCCCeEEEECCcc-ChHHHHHhh-c-CcEEEEeccCCCHHhHHHHHHcCCCceeecc----cCCCCCCCCccceEEe
Q 037675 260 LGSGGIRIGFDIGGGS-GTFAARMAE-R-NVTVITNTLNVDAPYSEFIAARGLFPLYLSL----DHRFPFYDNVFDLVHA 332 (418)
Q Consensus 260 l~~g~~r~VLDvGCGt-G~faa~La~-~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~----~e~LPf~d~sFDlV~s 332 (418)
+..| .+||=.|+|. |..+..+++ . |+..+ ++++.++...+.+.+-|.-.++... .+.+.-....+|+|+.
T Consensus 158 ~~~g--~~vlI~g~g~vG~~~~~~a~~~~G~~~v-~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid 234 (339)
T PRK10083 158 PTEQ--DVALIYGAGPVGLTIVQVLKGVYNVKAV-IVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIID 234 (339)
T ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHhCCCCEE-EEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEE
Confidence 4445 3677788653 445566665 3 76543 3467777778888877762222111 1111111122456654
Q ss_pred cCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 333 SSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 333 ~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
.. ... ..+.+..+.|+++|.++.-.
T Consensus 235 ~~-----g~~----~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 235 AA-----CHP----SILEEAVTLASPAARIVLMG 259 (339)
T ss_pred CC-----CCH----HHHHHHHHHhhcCCEEEEEc
Confidence 21 111 45778899999999997654
No 344
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=50.70 E-value=1.3e+02 Score=29.19 Aligned_cols=91 Identities=18% Similarity=0.107 Sum_probs=51.2
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcC
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGL 336 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L 336 (418)
.+..+. +||=.|+|. |..+..+++ .|+.++ .++.++...+.+.+-|. .......+ . +.+.+|+++....
T Consensus 164 ~~~~~~--~vlV~g~g~vg~~~~~la~~~g~~v~--~~~~~~~~~~~~~~~g~-~~~~~~~~-~--~~~~vD~vi~~~~- 234 (329)
T cd08298 164 GLKPGQ--RLGLYGFGASAHLALQIARYQGAEVF--AFTRSGEHQELARELGA-DWAGDSDD-L--PPEPLDAAIIFAP- 234 (329)
T ss_pred CCCCCC--EEEEECCcHHHHHHHHHHHHCCCeEE--EEcCChHHHHHHHHhCC-cEEeccCc-c--CCCcccEEEEcCC-
Confidence 345453 555567653 333344444 477654 34555566677766665 32222111 1 3456888774211
Q ss_pred cCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
. . ..+.++.|.|+++|.+++.+
T Consensus 235 ----~-~---~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 ----V-G---ALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred ----c-H---HHHHHHHHHhhcCCEEEEEc
Confidence 1 1 46779999999999997654
No 345
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=50.40 E-value=28 Score=29.27 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=37.5
Q ss_pred HHHHcCCCceee--cccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHH
Q 037675 303 FIAARGLFPLYL--SLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTR 380 (418)
Q Consensus 303 ~a~eRGli~~~~--~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~ 380 (418)
+.+++|+ +... -.....+-....+|+++++.-+. .|+.... .|++++..-....+++.+.+.+
T Consensus 25 ~l~~~gi-~~~~~~~~v~~~~~~~~~aDiiv~s~~l~------------~~~~~~~--~~~v~~~~~~~d~~ei~~~l~~ 89 (93)
T COG3414 25 VLKELGI-DVDVEQCAVDEIKALTDGADIIVTSTKLA------------DEFEDIP--KGYVVITGNGMDIEEIKQKLLE 89 (93)
T ss_pred HHHHcCC-CceeeeEEecccccCCCcccEEEEehHhh------------hhcCcCC--CceEEEEcccCCHHHHHHHHHH
Confidence 3556666 2221 13334444566779999865332 2333333 3888888777777777666655
Q ss_pred HHH
Q 037675 381 LIE 383 (418)
Q Consensus 381 l~~ 383 (418)
.++
T Consensus 90 ~L~ 92 (93)
T COG3414 90 ILK 92 (93)
T ss_pred HHh
Confidence 543
No 346
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=49.92 E-value=1.1e+02 Score=30.27 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=53.9
Q ss_pred ccCCCCCCeEEEECCc-cChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecccCC----C-C-CCCCccce
Q 037675 259 ALGSGGIRIGFDIGGG-SGTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDHR----F-P-FYDNVFDL 329 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCG-tG~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~----L-P-f~d~sFDl 329 (418)
.+.+| .+||=.|+| .|..+..+++. |+ .++ +.+.++...+.+.+.|....+.....+ + . ...+.+|+
T Consensus 169 ~~~~g--~~vlI~g~g~vG~~a~q~a~~~G~~~v~--~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~ 244 (351)
T cd08233 169 GFKPG--DTALVLGAGPIGLLTILALKAAGASKII--VSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDV 244 (351)
T ss_pred CCCCC--CEEEEECCCHHHHHHHHHHHHcCCCEEE--EECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCE
Confidence 34555 366666754 24555556554 77 443 346677777777776652222111111 1 0 12345898
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
|+-... . . ..+.++.+.|++||.++....
T Consensus 245 vid~~g-----~-~---~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 245 SFDCAG-----V-Q---ATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred EEECCC-----C-H---HHHHHHHHhccCCCEEEEEcc
Confidence 885321 1 1 456788999999999876544
No 347
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=49.51 E-value=1e+02 Score=30.32 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=54.3
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcE-EEEeccCCCHHhHHHHHHcCCCceeeccc---CCC-CC-CCCccceE
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVT-VITNTLNVDAPYSEFIAARGLFPLYLSLD---HRF-PF-YDNVFDLV 330 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~-vv~~alD~s~~~l~~a~eRGli~~~~~~~---e~L-Pf-~d~sFDlV 330 (418)
.+.+| .+||-.|+|. |.++..+++. |+. ++ +++.++...+.+.+.|....+.... +.+ .. ..+.+|+|
T Consensus 156 ~~~~~--~~vlI~g~g~~g~~~~~lA~~~G~~~v~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v 231 (343)
T cd08236 156 GITLG--DTVVVIGAGTIGLLAIQWLKILGAKRVI--AVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLV 231 (343)
T ss_pred CCCCC--CEEEEECCCHHHHHHHHHHHHcCCCEEE--EEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEE
Confidence 34445 3788888654 5555666654 765 43 3455666666666666522222111 110 11 23458999
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
+... .. . ..+.++.+.|+++|.++...
T Consensus 232 ld~~-----g~-~---~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 232 IEAA-----GS-P---ATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EECC-----CC-H---HHHHHHHHHhhcCCEEEEEc
Confidence 8531 11 1 46678999999999986543
No 348
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=49.08 E-value=55 Score=33.14 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=48.4
Q ss_pred CeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCH-HhHHHHHHcCCCceeec-ccCCCCCCCCccceEEecCcCcCCCC
Q 037675 266 RIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDA-PYSEFIAARGLFPLYLS-LDHRFPFYDNVFDLVHASSGLDVGGQ 341 (418)
Q Consensus 266 r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~-~~l~~a~eRGli~~~~~-~~e~LPf~d~sFDlV~s~~~L~~~~~ 341 (418)
.+||=.|+|. |.++..+++. |..++. ++.+. ...+.+++.|...++.. ..+.+.-..+.+|+|+-... .
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~Ga~vi~--~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g-----~ 257 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTV--ISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS-----A 257 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEE--EeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC-----C
Confidence 3777788864 6666666664 776542 34333 23344556665222211 10011000124788875221 1
Q ss_pred hhHHHHHHHHhhccccCCcEEEEEe
Q 037675 342 PEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 342 ~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
. ..+.+..+.||+||.++...
T Consensus 258 ~----~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 258 V----HALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred H----HHHHHHHHHhcCCcEEEEeC
Confidence 1 45668889999999987654
No 349
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=49.07 E-value=63 Score=34.20 Aligned_cols=86 Identities=15% Similarity=0.216 Sum_probs=53.7
Q ss_pred CeEEEECCcc-ChHHHHHh-hcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChh
Q 037675 266 RIGFDIGGGS-GTFAARMA-ERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPE 343 (418)
Q Consensus 266 r~VLDvGCGt-G~faa~La-~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~ 343 (418)
++|+=+|+|. |...+.++ ..|..++ ++|.++.-.+.|.+-|. .... ..+.+ ..+|+|+... ..+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~Vi--V~d~d~~R~~~A~~~G~-~~~~-~~e~v----~~aDVVI~at-----G~~- 268 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVI--VTEVDPICALQAAMEGY-EVMT-MEEAV----KEGDIFVTTT-----GNK- 268 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEE--EEECChhhHHHHHhcCC-EEcc-HHHHH----cCCCEEEECC-----CCH-
Confidence 5899999997 65444444 4587664 36777777777887775 2211 11111 3479998642 111
Q ss_pred HHHHHHH-HhhccccCCcEEEEEecc
Q 037675 344 KLEFLMF-DFDRILRAGGLFWLDNFY 368 (418)
Q Consensus 344 ~le~~L~-Ei~RVLRPGG~~ii~~~~ 368 (418)
.++. +..+.+|+||+++....+
T Consensus 269 ---~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 269 ---DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred ---HHHHHHHHhcCCCCcEEEEeCCC
Confidence 3333 458899999999776643
No 350
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=48.79 E-value=77 Score=28.41 Aligned_cols=113 Identities=18% Similarity=0.135 Sum_probs=63.1
Q ss_pred eEEEECCccC--hHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhH
Q 037675 267 IGFDIGGGSG--TFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEK 344 (418)
Q Consensus 267 ~VLDvGCGtG--~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~ 344 (418)
+|-=||+|.= ..+..|++.|..+. +.|.+++-.+...+.|. ... +...++ -+..|+|+.. ..+...
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~--~~d~~~~~~~~~~~~g~-~~~-~s~~e~---~~~~dvvi~~-----v~~~~~ 70 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVT--VYDRSPEKAEALAEAGA-EVA-DSPAEA---AEQADVVILC-----VPDDDA 70 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEE--EEESSHHHHHHHHHTTE-EEE-SSHHHH---HHHBSEEEE------SSSHHH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEE--eeccchhhhhhhHHhhh-hhh-hhhhhH---hhcccceEee-----cccchh
Confidence 3444677652 35677777787764 36888877777777773 111 111111 1234888763 234456
Q ss_pred HHHHHHH--hhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEE
Q 037675 345 LEFLMFD--FDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWV 393 (418)
Q Consensus 345 le~~L~E--i~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~ 393 (418)
.+.++.+ +...|++|..+ |+.... ..+....+.+.++..|..-++=-
T Consensus 71 v~~v~~~~~i~~~l~~g~ii-id~sT~-~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKII-IDMSTI-SPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEE-EE-SS---HHHHHHHHHHHHHTTEEEEEEE
T ss_pred hhhhhhhhHHhhccccceEE-EecCCc-chhhhhhhhhhhhhccceeeeee
Confidence 7788888 88888888765 433222 23333456677777787766533
No 351
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=48.60 E-value=2.6e+02 Score=31.62 Aligned_cols=90 Identities=20% Similarity=0.253 Sum_probs=50.2
Q ss_pred CCccceEEecCcCcCCCChhHHHHHHHH-hhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCc
Q 037675 324 DNVFDLVHASSGLDVGGQPEKLEFLMFD-FDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGK 402 (418)
Q Consensus 324 d~sFDlV~s~~~L~~~~~~~~le~~L~E-i~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~ 402 (418)
.-++|+|++..=......-..++..+.+ +.++|.++|.+|+-.+...--..+......+.++ |+.+.+...+-+....
T Consensus 413 ~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~-F~~V~l~qT~~SSs~T 491 (675)
T PF14314_consen 413 NLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRY-FKSVELVQTQFSSSFT 491 (675)
T ss_pred CCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhh-cCceEEEECCCCCCCc
Confidence 4579999995433222222234444444 5588899999988776332111111123333333 8888866655444456
Q ss_pred cceEEEEEEEcCCC
Q 037675 403 SEVYLSAVLQKPVR 416 (418)
Q Consensus 403 ~e~~l~Ai~qKP~~ 416 (418)
.|+|+. +||+.+
T Consensus 492 SEVYlv--~~~~~~ 503 (675)
T PF14314_consen 492 SEVYLV--FQKLKK 503 (675)
T ss_pred eEEEEE--EecccC
Confidence 788875 666543
No 352
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=48.56 E-value=1.7e+02 Score=28.58 Aligned_cols=97 Identities=20% Similarity=0.159 Sum_probs=53.9
Q ss_pred cCCCCCCeEEEECCc-cChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCC----C--CCCCCccceEE
Q 037675 260 LGSGGIRIGFDIGGG-SGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHR----F--PFYDNVFDLVH 331 (418)
Q Consensus 260 l~~g~~r~VLDvGCG-tG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~----L--Pf~d~sFDlV~ 331 (418)
+.+| .+||=.|+| .|..+..+++. |..++.++.+.+....+.+.+.|+..+ ...... + -...+.+|+++
T Consensus 162 ~~~g--~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~l~~~~~~~~vd~vl 238 (306)
T cd08258 162 IRPG--DTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADAV-NGGEEDLAELVNEITDGDGADVVI 238 (306)
T ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhCCccc-CCCcCCHHHHHHHHcCCCCCCEEE
Confidence 4444 356555643 34455556554 777653334555556667777776222 110000 1 02335688887
Q ss_pred ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675 332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY 368 (418)
Q Consensus 332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~ 368 (418)
... .. . ..+.+..+.|+++|.++.....
T Consensus 239 d~~-----g~-~---~~~~~~~~~l~~~G~~v~~g~~ 266 (306)
T cd08258 239 ECS-----GA-V---PALEQALELLRKGGRIVQVGIF 266 (306)
T ss_pred ECC-----CC-h---HHHHHHHHHhhcCCEEEEEccc
Confidence 532 11 1 5677889999999999765543
No 353
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=48.15 E-value=1.2e+02 Score=30.76 Aligned_cols=95 Identities=19% Similarity=0.148 Sum_probs=57.9
Q ss_pred ccCCCCCCeEEEEC--CccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceee----cccCCC--CCCCCccce
Q 037675 259 ALGSGGIRIGFDIG--GGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYL----SLDHRF--PFYDNVFDL 329 (418)
Q Consensus 259 ~l~~g~~r~VLDvG--CGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~----~~~e~L--Pf~d~sFDl 329 (418)
.++.|+ +||=.| .|+|.++..|++. |..++. .-.+++-.+++++-|-...+. ++.++. ....+.+|+
T Consensus 139 ~l~~g~--~VLV~gaaGgVG~~aiQlAk~~G~~~v~--~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDv 214 (326)
T COG0604 139 GLKPGE--TVLVHGAAGGVGSAAIQLAKALGATVVA--VVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDV 214 (326)
T ss_pred CCCCCC--EEEEecCCchHHHHHHHHHHHcCCcEEE--EecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceE
Confidence 456654 788888 4678999999986 644431 233444445777777522221 122222 133456999
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
|+..- . ...+.+..+.|+++|.++.-..
T Consensus 215 v~D~v-----G-----~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 215 VLDTV-----G-----GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred EEECC-----C-----HHHHHHHHHHhccCCEEEEEec
Confidence 98632 1 1566788999999999866443
No 354
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=47.83 E-value=42 Score=34.12 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=35.4
Q ss_pred HHHHHHc---cCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH
Q 037675 253 LIDDVLA---LGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA 306 (418)
Q Consensus 253 ~I~~lL~---l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e 306 (418)
+++++|. ..+| ..++|.=+|.|+.+..+++. +..++ ++|.++..++.+++
T Consensus 8 ll~Evl~~L~~~~g--giyVD~TlG~GGHS~~iL~~l~~g~vi--giD~D~~Al~~ak~ 62 (305)
T TIGR00006 8 LLDEVVEGLNIKPD--GIYIDCTLGFGGHSKAILEQLGTGRLI--GIDRDPQAIAFAKE 62 (305)
T ss_pred hHHHHHHhcCcCCC--CEEEEeCCCChHHHHHHHHhCCCCEEE--EEcCCHHHHHHHHH
Confidence 4555554 3344 48999999999999999876 34454 57888877766554
No 355
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=47.08 E-value=1.7e+02 Score=25.94 Aligned_cols=89 Identities=10% Similarity=0.148 Sum_probs=49.8
Q ss_pred HHHHHhhcCcEEEEeccCCCH-HhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccc
Q 037675 278 FAARMAERNVTVITNTLNVDA-PYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRIL 356 (418)
Q Consensus 278 faa~La~~gV~vv~~alD~s~-~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVL 356 (418)
.+..|...|..|+..++|.++ ..++.|.+.+ .|+|-.+..+.+.. ..++.++. .|
T Consensus 19 v~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~------------------adiVglS~L~t~~~--~~~~~~~~----~l 74 (128)
T cd02072 19 LDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD------------------ADAILVSSLYGHGE--IDCKGLRE----KC 74 (128)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC------------------CCEEEEeccccCCH--HHHHHHHH----HH
Confidence 456677779999877899885 4556666654 45555554443321 22333333 33
Q ss_pred cCCc---E-EEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675 357 RAGG---L-FWLDNFYCANDEKKSALTRLIERFGYKKL 390 (418)
Q Consensus 357 RPGG---~-~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l 390 (418)
|-.| . +++.......++..++..+.++++||..+
T Consensus 75 ~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~v 112 (128)
T cd02072 75 DEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRV 112 (128)
T ss_pred HHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEE
Confidence 3333 2 33433332233444445667888999766
No 356
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=46.42 E-value=2.2e+02 Score=29.25 Aligned_cols=96 Identities=13% Similarity=0.003 Sum_probs=58.4
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCC-CCCccceEEecCcCcCCCChhH
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPF-YDNVFDLVHASSGLDVGGQPEK 344 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf-~d~sFDlV~s~~~L~~~~~~~~ 344 (418)
+.||=+|--...+...|....+.+.+ -+.+.. .......|. ....+ ..++. ....||+|+. .+-..+..
T Consensus 21 ~~~l~~~~~~d~~~~~l~~~~~~~~~--~~~~~~-~~~~~~~~~-~~~f~--~~~~~~~~~~~d~~~~----~~pk~k~~ 90 (342)
T PRK09489 21 RRVLFAGDLQDDLPAQLDAASVRVHT--QQFHHW-QVLSRQMGD-NARFS--LVATAEDVADCDTLIY----YWPKNKQE 90 (342)
T ss_pred CcEEEEcCcchhhHHhhhccceEEeh--hhhHHH-HHHHhhcCC-ceEec--cccCCccCCCCCEEEE----ECCCCHHH
Confidence 46888888778888777644455542 233221 112222232 22222 11121 2357999884 33445566
Q ss_pred HHHHHHHhhccccCCcEEEEEecccCc
Q 037675 345 LEFLMFDFDRILRAGGLFWLDNFYCAN 371 (418)
Q Consensus 345 le~~L~Ei~RVLRPGG~~ii~~~~~~~ 371 (418)
.+..|.++.+.|+|||.+++.+....+
T Consensus 91 ~~~~l~~~~~~l~~g~~i~~~G~~~~g 117 (342)
T PRK09489 91 AQFQLMNLLSLLPVGTDIFVVGENRSG 117 (342)
T ss_pred HHHHHHHHHHhCCCCCEEEEEEecccc
Confidence 789999999999999999998876554
No 357
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=45.74 E-value=1.3e+02 Score=30.42 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=55.6
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecccC--CC-----CCCCCccc
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDH--RF-----PFYDNVFD 328 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e--~L-----Pf~d~sFD 328 (418)
.+.+| .+||=.|+|. |.++..+++. |. .++ ++|.++..++.+++-|....+..... .+ ...++.+|
T Consensus 183 ~~~~g--~~VlV~G~G~vG~~a~~~ak~~G~~~vi--~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 258 (368)
T cd08300 183 KVEPG--STVAVFGLGAVGLAVIQGAKAAGASRII--GIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVD 258 (368)
T ss_pred CCCCC--CEEEEECCCHHHHHHHHHHHHcCCCeEE--EEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCc
Confidence 35555 3777778753 5566666654 76 343 45778888888877775222211100 00 01123688
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCC-cEEEEEec
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAG-GLFWLDNF 367 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPG-G~~ii~~~ 367 (418)
+|+-.. ... ..+.+..+.|||+ |.+++...
T Consensus 259 ~vid~~-----g~~----~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 259 YTFECI-----GNV----KVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred EEEECC-----CCh----HHHHHHHHhhccCCCeEEEEcc
Confidence 887521 111 4566788899997 98876554
No 358
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=45.66 E-value=1.7e+02 Score=31.60 Aligned_cols=112 Identities=16% Similarity=0.128 Sum_probs=62.5
Q ss_pred HHHHHHccCCCCCCeEEEECCccChHHHHHhh----cCcEEEEeccCCCHHhHHHHHH----cCCC---ceeecccCCCC
Q 037675 253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAE----RNVTVITNTLNVDAPYSEFIAA----RGLF---PLYLSLDHRFP 321 (418)
Q Consensus 253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~----~gV~vv~~alD~s~~~l~~a~e----RGli---~~~~~~~e~LP 321 (418)
+|.+++...++ .+|.|--||+|++-....+ ......-.+.+....+...++- +|+- ...+++.-.=|
T Consensus 177 liv~~l~~~~~--~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~ 254 (489)
T COG0286 177 LIVELLDPEPR--NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNP 254 (489)
T ss_pred HHHHHcCCCCC--CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCC
Confidence 45555544333 3899999999987543332 2211222457877777765543 3442 22233322223
Q ss_pred C-----CCCccceEEecCcCc---CC-------------------CChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 322 F-----YDNVFDLVHASSGLD---VG-------------------GQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 322 f-----~d~sFDlV~s~~~L~---~~-------------------~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
. -.+.||.|+++-=+. +. ..+.+...+++.+.+.|+|||+..|.-
T Consensus 255 ~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 255 KHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred cccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 2 336799998852221 11 111222578999999999998664433
No 359
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=45.65 E-value=57 Score=31.62 Aligned_cols=46 Identities=15% Similarity=0.417 Sum_probs=33.9
Q ss_pred HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEE
Q 037675 345 LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVV 394 (418)
Q Consensus 345 le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~ 394 (418)
+...+.+..|+|+++|.+++...+.. ...+...++..||.-+...+
T Consensus 78 ~~~~~~~~~rvl~~~~~~~v~~~~~~----~~~~~~~~~~~gf~~~~~ii 123 (302)
T COG0863 78 LLQWLAEQKRVLKPGGSLYVIDPFSN----LARIEDIAKKLGFEILGKII 123 (302)
T ss_pred HHHHHHHhhheecCCCEEEEECCchh----hhHHHHHHHhCCCeEeeeEE
Confidence 45788999999999999988877622 22355567779998766444
No 360
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=45.54 E-value=33 Score=36.25 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=26.8
Q ss_pred CCeEEEECCccChHHHHHhh-cCcEEEEeccCCCHHhH
Q 037675 265 IRIGFDIGGGSGTFAARMAE-RNVTVITNTLNVDAPYS 301 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~-~gV~vv~~alD~s~~~l 301 (418)
+..|.|+|.|.|.++..|.= .|..|+ ++|-+....
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~--aIegsq~~~ 189 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVK--AIEGSQRLV 189 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEE--EeccchHHH
Confidence 67999999999999998874 477776 467664433
No 361
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=45.36 E-value=95 Score=30.78 Aligned_cols=86 Identities=14% Similarity=0.026 Sum_probs=51.6
Q ss_pred CeEEEECCcc--ChHHHHHhhcCc--EEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675 266 RIGFDIGGGS--GTFAARMAERNV--TVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ 341 (418)
Q Consensus 266 r~VLDvGCGt--G~faa~La~~gV--~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~ 341 (418)
++|.=||+|. +.++..|.+.|. .+. +.|.++...+.+.+.|.........+. .-+..|+|+..--
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~--~~dr~~~~~~~a~~~g~~~~~~~~~~~---~~~~aDvViiavp------ 75 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIV--GADRSAETRARARELGLGDRVTTSAAE---AVKGADLVILCVP------ 75 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEE--EEECCHHHHHHHHhCCCCceecCCHHH---HhcCCCEEEECCC------
Confidence 5788889887 346677777774 343 468888777777777752222111111 1134788876431
Q ss_pred hhHHHHHHHHhhccccCCcEE
Q 037675 342 PEKLEFLMFDFDRILRAGGLF 362 (418)
Q Consensus 342 ~~~le~~L~Ei~RVLRPGG~~ 362 (418)
......++.++...++||..+
T Consensus 76 ~~~~~~v~~~l~~~l~~~~iv 96 (307)
T PRK07502 76 VGASGAVAAEIAPHLKPGAIV 96 (307)
T ss_pred HHHHHHHHHHHHhhCCCCCEE
Confidence 122346677777788888754
No 362
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=45.35 E-value=2e+02 Score=27.39 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=50.0
Q ss_pred cCCCCCCeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC---CCCCCccceEEec
Q 037675 260 LGSGGIRIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF---PFYDNVFDLVHAS 333 (418)
Q Consensus 260 l~~g~~r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L---Pf~d~sFDlV~s~ 333 (418)
+..| .+||-.|+ +.|..+..+++. |+.++.. +.+ ...+.+.+.|....+......+ ....+.+|+|+..
T Consensus 141 ~~~g--~~vli~g~~g~~g~~~~~la~~~g~~v~~~--~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 215 (319)
T cd08267 141 VKPG--QRVLINGASGGVGTFAVQIAKALGAHVTGV--CST-RNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDA 215 (319)
T ss_pred CCCC--CEEEEEcCCcHHHHHHHHHHHHcCCEEEEE--eCH-HHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEEC
Confidence 4445 48999997 356666666654 7776532 222 5556677767522221111111 2344568999863
Q ss_pred CcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
..- ... .....+. .|+++|.++...
T Consensus 216 ~~~----~~~---~~~~~~~-~l~~~g~~i~~g 240 (319)
T cd08267 216 VGN----SPF---SLYRASL-ALKPGGRYVSVG 240 (319)
T ss_pred CCc----hHH---HHHHhhh-ccCCCCEEEEec
Confidence 211 011 2222333 399999987543
No 363
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=45.35 E-value=1.5e+02 Score=27.95 Aligned_cols=89 Identities=19% Similarity=0.112 Sum_probs=50.5
Q ss_pred CeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC-----C-CCCCccceEEecCcC
Q 037675 266 RIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF-----P-FYDNVFDLVHASSGL 336 (418)
Q Consensus 266 r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L-----P-f~d~sFDlV~s~~~L 336 (418)
.+||-.|| +.|..++.+++. |+.++. ++.++...+.+.+.|....+......+ . ...+.+|+++....
T Consensus 141 ~~vli~g~~~~~g~~~~~~a~~~g~~v~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~g- 217 (323)
T cd08241 141 ETVLVLGAAGGVGLAAVQLAKALGARVIA--AASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVG- 217 (323)
T ss_pred CEEEEEcCCchHHHHHHHHHHHhCCEEEE--EeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECcc-
Confidence 48999998 345555555544 777643 455666677777777522222111111 0 12346898875321
Q ss_pred cCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
. ..+.++.+.++++|.++...
T Consensus 218 -------~--~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 218 -------G--DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred -------H--HHHHHHHHhhccCCEEEEEc
Confidence 0 23456778899999886543
No 364
>PRK13699 putative methylase; Provisional
Probab=45.13 E-value=65 Score=31.00 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=36.8
Q ss_pred HHHHHHHcc--CCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc
Q 037675 252 FLIDDVLAL--GSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR 307 (418)
Q Consensus 252 ~~I~~lL~l--~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR 307 (418)
.++..+|.. .+| ..|||-=||+|+.+.+-.+.|-..+ ++|+++...+.+.+|
T Consensus 151 ~l~~~~i~~~s~~g--~~vlDpf~Gsgtt~~aa~~~~r~~~--g~e~~~~y~~~~~~r 204 (227)
T PRK13699 151 TSLQPLIESFTHPN--AIVLDPFAGSGSTCVAALQSGRRYI--GIELLEQYHRAGQQR 204 (227)
T ss_pred HHHHHHHHHhCCCC--CEEEeCCCCCCHHHHHHHHcCCCEE--EEecCHHHHHHHHHH
Confidence 356666543 344 4899999999998877777665554 358888877776665
No 365
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=44.34 E-value=31 Score=37.87 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=60.8
Q ss_pred CCeEEEECCccChHH------HHHhhcCcEEEEeccCCCHHhHHHHHHc------CCCceeecccCCCCCCCCccceEEe
Q 037675 265 IRIGFDIGGGSGTFA------ARMAERNVTVITNTLNVDAPYSEFIAAR------GLFPLYLSLDHRFPFYDNVFDLVHA 332 (418)
Q Consensus 265 ~r~VLDvGCGtG~fa------a~La~~gV~vv~~alD~s~~~l~~a~eR------Gli~~~~~~~e~LPf~d~sFDlV~s 332 (418)
.-.|+=+|+|-|-++ +.+.++.|.+. +++-.++.+-....+ +.+.++..+...++-|....|++++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVkly--avEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS 445 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLY--AVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS 445 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEE--EEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH
Confidence 446889999999765 33334556554 455555433222222 2235555788888855689999998
Q ss_pred cCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 333 SSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 333 ~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
-. |..+.+.+--...|.-+.+.|||+|+.|=.
T Consensus 446 EL-LGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 446 EL-LGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred Hh-hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 53 222333333346788999999999977443
No 366
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=43.82 E-value=1.3e+02 Score=30.16 Aligned_cols=96 Identities=17% Similarity=0.124 Sum_probs=55.6
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeeccc--CCC-----CCCCCccc
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLD--HRF-----PFYDNVFD 328 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~--e~L-----Pf~d~sFD 328 (418)
.+.+| .+||=.|+|. |.++..+++. |+ .++ +++.++...+.+++-|...++.... +.+ ....+.+|
T Consensus 184 ~~~~g--~~VlV~G~g~vG~~a~q~ak~~G~~~vi--~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d 259 (369)
T cd08301 184 KVKKG--STVAIFGLGAVGLAVAEGARIRGASRII--GVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVD 259 (369)
T ss_pred CCCCC--CEEEEECCCHHHHHHHHHHHHcCCCeEE--EEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCC
Confidence 35555 4777788753 4555666654 76 453 4577778888888877532222110 011 01223588
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCC-cEEEEEec
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAG-GLFWLDNF 367 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPG-G~~ii~~~ 367 (418)
+|+-.. ... ..+.+..+.+++| |.+++...
T Consensus 260 ~vid~~-----G~~----~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 260 YSFECT-----GNI----DAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred EEEECC-----CCh----HHHHHHHHHhhcCCCEEEEECc
Confidence 887421 111 4566788899996 99877554
No 367
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=43.71 E-value=1.2e+02 Score=30.48 Aligned_cols=95 Identities=15% Similarity=0.068 Sum_probs=53.2
Q ss_pred cCCCCCCeEEEECCcc-ChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeecccC--CC-----CCCCCccceE
Q 037675 260 LGSGGIRIGFDIGGGS-GTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDH--RF-----PFYDNVFDLV 330 (418)
Q Consensus 260 l~~g~~r~VLDvGCGt-G~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e--~L-----Pf~d~sFDlV 330 (418)
+.+|+ +||=.|+|. |..+..+++ .|...+ ++.+.++...+.+.+-|...++..... .+ ....+.+|+|
T Consensus 181 ~~~g~--~vlI~g~g~vG~~a~~~a~~~G~~~v-~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~v 257 (365)
T cd05279 181 VTPGS--TCAVFGLGGVGLSVIMGCKAAGASRI-IAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVDYA 257 (365)
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCeE-EEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCcEE
Confidence 44553 666677643 344444554 376532 235667777777777675322221111 00 0113568988
Q ss_pred EecCcCcCCCChhHHHHHHHHhhcccc-CCcEEEEEe
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILR-AGGLFWLDN 366 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLR-PGG~~ii~~ 366 (418)
+... ... ..+.+..+.|+ ++|.++...
T Consensus 258 id~~-----g~~----~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 258 FEVI-----GSA----DTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred EECC-----CCH----HHHHHHHHHhccCCCEEEEEe
Confidence 8531 111 46678899999 999997654
No 368
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=41.69 E-value=20 Score=38.80 Aligned_cols=93 Identities=19% Similarity=0.236 Sum_probs=62.6
Q ss_pred eEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---Cceeeccc----CCCCCCCCccceEEec
Q 037675 267 IGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLD----HRFPFYDNVFDLVHAS 333 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~----e~LPf~d~sFDlV~s~ 333 (418)
+|||.=|++|-=+.+.++. ||.-+ .+-|.+++.++.+.+. +. +...++++ ...+-.+..||+|+
T Consensus 112 ~vLealsAtGlrslRya~El~~v~~v-~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID-- 188 (525)
T KOG1253|consen 112 RVLEALSATGLRSLRYAKELPGVRQV-VANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID-- 188 (525)
T ss_pred hHHHHhhhhhHHHHHHHHHhcchhhh-cccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe--
Confidence 6888888999777666654 44332 3578888777654432 22 12223332 23344578999999
Q ss_pred CcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
|.++..+. .+|.-..+.++-||.+.++..
T Consensus 189 --LDPyGs~s---~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 189 --LDPYGSPS---PFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred --cCCCCCcc---HHHHHHHHHhhcCCEEEEEec
Confidence 66766655 889999999999999988754
No 369
>PRK11524 putative methyltransferase; Provisional
Probab=41.48 E-value=59 Score=32.15 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=39.4
Q ss_pred HHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc
Q 037675 251 DFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR 307 (418)
Q Consensus 251 ~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR 307 (418)
..++..+|.....+...|||-=||+|+.+.+-.+.|=..+ ++|++++..+.|.+|
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~I--G~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFI--GIEINSEYIKMGLRR 249 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEE--EEeCCHHHHHHHHHH
Confidence 3366776665332234899999999998877666664443 369999999988888
No 370
>PLN02702 L-idonate 5-dehydrogenase
Probab=41.26 E-value=2.2e+02 Score=28.47 Aligned_cols=95 Identities=18% Similarity=0.107 Sum_probs=53.4
Q ss_pred ccCCCCCCeEEEECCc-cChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeec-c--cCCCC--------CCCC
Q 037675 259 ALGSGGIRIGFDIGGG-SGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLS-L--DHRFP--------FYDN 325 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCG-tG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~-~--~e~LP--------f~d~ 325 (418)
.+..| .+||=+|+| .|..+..+++. |+..+ ++++.++...+.+.+-|. ..... . .+.++ ...+
T Consensus 178 ~~~~g--~~vlI~g~g~vG~~~~~~a~~~G~~~v-~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (364)
T PLN02702 178 NIGPE--TNVLVMGAGPIGLVTMLAARAFGAPRI-VIVDVDDERLSVAKQLGA-DEIVLVSTNIEDVESEVEEIQKAMGG 253 (364)
T ss_pred CCCCC--CEEEEECCCHHHHHHHHHHHHcCCCEE-EEECCCHHHHHHHHHhCC-CEEEecCcccccHHHHHHHHhhhcCC
Confidence 34445 367777765 24555555554 76533 235777776777777665 22221 1 01110 1234
Q ss_pred ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
.+|+|+-.. ... ..+.++.+.|+++|.++..+
T Consensus 254 ~~d~vid~~-----g~~----~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 254 GIDVSFDCV-----GFN----KTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCEEEECC-----CCH----HHHHHHHHHHhcCCEEEEEc
Confidence 688887531 111 45779999999999987644
No 371
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.47 E-value=2e+02 Score=30.96 Aligned_cols=112 Identities=13% Similarity=0.134 Sum_probs=65.4
Q ss_pred ChHHHHHhhcCcEEEEeccCCC-H---HhHHHHHHcCCCceeecccCCCC----------CCCCccceEEecCc-CcCCC
Q 037675 276 GTFAARMAERNVTVITNTLNVD-A---PYSEFIAARGLFPLYLSLDHRFP----------FYDNVFDLVHASSG-LDVGG 340 (418)
Q Consensus 276 G~faa~La~~gV~vv~~alD~s-~---~~l~~a~eRGli~~~~~~~e~LP----------f~d~sFDlV~s~~~-L~~~~ 340 (418)
|-+|.+|.++|..+.-.+.|+. + .|++...++--++++....+.=| +..+.||+|+...+ -++.
T Consensus 118 ~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~i- 196 (451)
T COG0541 118 GKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHI- 196 (451)
T ss_pred HHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccc-
Confidence 3466777777655443456765 2 35544444433366654333322 34667999998543 3333
Q ss_pred ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675 341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL 390 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l 390 (418)
+ +.+-.=+.+|.++++|.=.+++.|-....+ ....-..+-+.++++.+
T Consensus 197 d-e~Lm~El~~Ik~~~~P~E~llVvDam~GQd-A~~~A~aF~e~l~itGv 244 (451)
T COG0541 197 D-EELMDELKEIKEVINPDETLLVVDAMIGQD-AVNTAKAFNEALGITGV 244 (451)
T ss_pred c-HHHHHHHHHHHhhcCCCeEEEEEecccchH-HHHHHHHHhhhcCCceE
Confidence 3 334456788999999999887777644332 22334455666677655
No 372
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=39.61 E-value=1.3e+02 Score=29.65 Aligned_cols=90 Identities=20% Similarity=0.109 Sum_probs=50.8
Q ss_pred CeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecccCC----C-CCCCCccceEEecCcCc
Q 037675 266 RIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDHR----F-PFYDNVFDLVHASSGLD 337 (418)
Q Consensus 266 r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~----L-Pf~d~sFDlV~s~~~L~ 337 (418)
.+||-.|+|. |..+..+++. |. .++ .++.++...+.+.+-|...++...... + ....+.+|+|+....
T Consensus 177 ~~vlI~g~g~vg~~~~~~a~~~G~~~v~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g-- 252 (350)
T cd08240 177 EPVVIIGAGGLGLMALALLKALGPANII--VVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVN-- 252 (350)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEE--EEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEECCC--
Confidence 4788887653 4455555554 76 343 346667777777776752222111101 0 011225888875221
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
. . ..+.+..+.|+++|.++..+
T Consensus 253 ---~-~---~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 253 ---N-S---ATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred ---C-H---HHHHHHHHHhhcCCeEEEEC
Confidence 1 1 45779999999999987543
No 373
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=39.30 E-value=66 Score=34.28 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=46.9
Q ss_pred eEEEECCccCh--HHHHHhhcCcEEEEeccCCCHH--hH-HH--------HHHcCCC--------------ceee-cccC
Q 037675 267 IGFDIGGGSGT--FAARMAERNVTVITNTLNVDAP--YS-EF--------IAARGLF--------------PLYL-SLDH 318 (418)
Q Consensus 267 ~VLDvGCGtG~--faa~La~~gV~vv~~alD~s~~--~l-~~--------a~eRGli--------------~~~~-~~~e 318 (418)
.|+=||+|.++ +|..|++.|-.|..+..|.+++ .+ |+ ..+-|+. .++. +.--
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk~v 126 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDGKEV 126 (509)
T ss_pred cEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCCcee
Confidence 58999999986 5577887774443346788753 22 21 1222321 1111 2344
Q ss_pred CCCCCCCccceEEecCcCcCC
Q 037675 319 RFPFYDNVFDLVHASSGLDVG 339 (418)
Q Consensus 319 ~LPf~d~sFDlV~s~~~L~~~ 339 (418)
.+|||.+.|+-..+...||+-
T Consensus 127 ~~pyP~~~f~~d~~GrsFhnG 147 (509)
T KOG1298|consen 127 DLPYPLKNFPSDPSGRSFHNG 147 (509)
T ss_pred eccCCCcCCCCCcccceeecc
Confidence 789999999999999999975
No 374
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=39.02 E-value=36 Score=35.55 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=57.0
Q ss_pred eEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH----cCCCc----eeecccCCC-CCCCCccceEEecCc
Q 037675 267 IGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA----RGLFP----LYLSLDHRF-PFYDNVFDLVHASSG 335 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e----RGli~----~~~~~~e~L-Pf~d~sFDlV~s~~~ 335 (418)
+|||.=+|+|-=+.+.+.. ++.-+ ++-|++++.++.+.+ +++.. +...++..+ -...+.||+|-
T Consensus 52 ~~lDalaasGvR~iRy~~E~~~~~~v-~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID---- 126 (377)
T PF02005_consen 52 RVLDALAASGVRGIRYAKELAGVDKV-TANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID---- 126 (377)
T ss_dssp EEEETT-TTSHHHHHHHHH-SSECEE-EEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE----
T ss_pred eEEeccccccHHHHHHHHHcCCCCEE-EEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE----
Confidence 8999999999777666544 43322 235888876765543 45533 223344333 13577899998
Q ss_pred CcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+.++..+. .+|.-..+.+|.||++.++..
T Consensus 127 lDPfGSp~---pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 127 LDPFGSPA---PFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp E--SS--H---HHHHHHHHHEEEEEEEEEEE-
T ss_pred eCCCCCcc---HhHHHHHHHhhcCCEEEEecc
Confidence 56666665 788899999999999999764
No 375
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=38.77 E-value=1.6e+02 Score=28.94 Aligned_cols=90 Identities=18% Similarity=0.123 Sum_probs=52.8
Q ss_pred CeEEEECCcc-ChHHHHHhh-cCc-EEEEeccCCCHHhHHHHHHcCCCceeeccc-------CCCCCCCCccceEEecCc
Q 037675 266 RIGFDIGGGS-GTFAARMAE-RNV-TVITNTLNVDAPYSEFIAARGLFPLYLSLD-------HRFPFYDNVFDLVHASSG 335 (418)
Q Consensus 266 r~VLDvGCGt-G~faa~La~-~gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~-------e~LPf~d~sFDlV~s~~~ 335 (418)
.+||=.|+|. |..+..+++ .|+ .++ +++.++...+++.+.|.-.++.... .++ ...+.+|+|+....
T Consensus 165 ~~vlV~~~g~vg~~~~~la~~~G~~~v~--~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~-~~~~~~d~v~d~~g 241 (341)
T PRK05396 165 EDVLITGAGPIGIMAAAVAKHVGARHVV--ITDVNEYRLELARKMGATRAVNVAKEDLRDVMAEL-GMTEGFDVGLEMSG 241 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEE--EEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHh-cCCCCCCEEEECCC
Confidence 3666677653 555555665 376 343 2366777777777777622221111 111 23456898886211
Q ss_pred CcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
. +..+.++.+.|+++|.++....
T Consensus 242 -----~----~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 242 -----A----PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred -----C----HHHHHHHHHHHhcCCEEEEEec
Confidence 1 1567788999999999977653
No 376
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=38.33 E-value=87 Score=27.97 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=46.9
Q ss_pred CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch--hHHHHHHHHHHHcCcEEEE
Q 037675 323 YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND--EKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 323 ~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e--e~~~~~~~l~~~~Gfk~l~ 391 (418)
++...|.|+... -....++...|-...+.|..+|.+|+..|....+ -....+.+....+|+...+
T Consensus 42 ~ddvvD~vllWw----R~~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~g~V~~~~I~eaA~taGL~~t~ 108 (127)
T PF11253_consen 42 YDDVVDVVLLWW----RDDDGDLVDALVDARTNLADDGVIWVLTPKAGRPGHVEPSDIREAAPTAGLVQTK 108 (127)
T ss_pred ccccccEEEEEE----ECCcchHHHHHHHHHhhhcCCCEEEEEccCCCCCCCCCHHHHHHHHhhcCCeeee
Confidence 467788887522 1234468899999999999999999999854321 1224577888999997664
No 377
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=37.41 E-value=2.3e+02 Score=26.91 Aligned_cols=91 Identities=23% Similarity=0.238 Sum_probs=54.3
Q ss_pred cCCCCCCeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC-----CCCCCccceEE
Q 037675 260 LGSGGIRIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF-----PFYDNVFDLVH 331 (418)
Q Consensus 260 l~~g~~r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L-----Pf~d~sFDlV~ 331 (418)
+..| .+||=.|+ +.|..+..+++. |+.++. +..++...+.+.+.|. ..+......+ .+ .+.+|+|+
T Consensus 140 ~~~g--~~vlV~ga~g~~g~~~~~~a~~~g~~v~~--~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~i~~~-~~~~d~vl 213 (320)
T cd08243 140 LQPG--DTLLIRGGTSSVGLAALKLAKALGATVTA--TTRSPERAALLKELGA-DEVVIDDGAIAEQLRAA-PGGFDKVL 213 (320)
T ss_pred CCCC--CEEEEEcCCChHHHHHHHHHHHcCCEEEE--EeCCHHHHHHHHhcCC-cEEEecCccHHHHHHHh-CCCceEEE
Confidence 4444 47777776 456676777764 777642 3555666677777775 2222111110 12 45689888
Q ss_pred ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
... . + ..+.+..+.|+++|.++..+
T Consensus 214 ~~~-----~---~--~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 214 ELV-----G---T--ATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred ECC-----C---h--HHHHHHHHHhccCCEEEEEc
Confidence 532 1 1 45678889999999987643
No 378
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=36.30 E-value=1.1e+02 Score=33.89 Aligned_cols=89 Identities=10% Similarity=0.110 Sum_probs=54.5
Q ss_pred eEEEECCccChHHHH----HhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCC----CCCccceEEecCcCcC
Q 037675 267 IGFDIGGGSGTFAAR----MAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPF----YDNVFDLVHASSGLDV 338 (418)
Q Consensus 267 ~VLDvGCGtG~faa~----La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf----~d~sFDlV~s~~~L~~ 338 (418)
.|+= ||.|.++.. |.++++.++ .+|.+++.++.+++.|. +.+.+++.+... .-+..|+|++..
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g~~vv--vID~d~~~v~~~~~~g~-~v~~GDat~~~~L~~agi~~A~~vv~~~---- 472 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMANKMRIT--VLERDISAVNLMRKYGY-KVYYGDATQLELLRAAGAEKAEAIVITC---- 472 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHhCCCCEE--EEECCHHHHHHHHhCCC-eEEEeeCCCHHHHHhcCCccCCEEEEEe----
Confidence 3544 455555544 444566554 36999999999988887 777776554321 224577776532
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
++.+ ....+.+..|-+.|...++...
T Consensus 473 -~d~~-~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 473 -NEPE-DTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred -CCHH-HHHHHHHHHHHHCCCCeEEEEe
Confidence 2212 1245566777788998887654
No 379
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=35.76 E-value=1.1e+02 Score=32.42 Aligned_cols=86 Identities=23% Similarity=0.076 Sum_probs=51.2
Q ss_pred CCeEEEECCc-cChH-HHHHhhcCcEEEEeccCCC-HHhHHHHHHcCCCceeecccCCCCCCCCccceEEec-CcCcCCC
Q 037675 265 IRIGFDIGGG-SGTF-AARMAERNVTVITNTLNVD-APYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHAS-SGLDVGG 340 (418)
Q Consensus 265 ~r~VLDvGCG-tG~f-aa~La~~gV~vv~~alD~s-~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~-~~L~~~~ 340 (418)
..+||=||.| +|.. +.+|.++|+..|.+ .+-. +...+.|.+-|. ..-..++++-.-+.+|+|+++ ..-++..
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~I-aNRT~erA~~La~~~~~---~~~~l~el~~~l~~~DvVissTsa~~~ii 253 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITI-ANRTLERAEELAKKLGA---EAVALEELLEALAEADVVISSTSAPHPII 253 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEE-EcCCHHHHHHHHHHhCC---eeecHHHHHHhhhhCCEEEEecCCCcccc
Confidence 3589999999 7764 57788888766533 3433 344556666552 111122333334679999986 5566666
Q ss_pred ChhHHHHHHHHhhc
Q 037675 341 QPEKLEFLMFDFDR 354 (418)
Q Consensus 341 ~~~~le~~L~Ei~R 354 (418)
....++.++..-.|
T Consensus 254 ~~~~ve~a~~~r~~ 267 (414)
T COG0373 254 TREMVERALKIRKR 267 (414)
T ss_pred CHHHHHHHHhcccC
Confidence 66655555444333
No 380
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=35.48 E-value=40 Score=34.24 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=27.7
Q ss_pred ChhHHHHHHHHhhccccCCcEEEEEecccCchhH
Q 037675 341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEK 374 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~ 374 (418)
....++.+|..+..+|+|||++++-.|..-++.+
T Consensus 215 EL~~L~~~L~~~~~~L~~gGrl~VISfHSLEDRi 248 (305)
T TIGR00006 215 ELEELEEALQFAPNLLAPGGRLSIISFHSLEDRI 248 (305)
T ss_pred hHHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHH
Confidence 3456889999999999999999988887765544
No 381
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.65 E-value=2.7e+02 Score=24.88 Aligned_cols=90 Identities=8% Similarity=0.098 Sum_probs=49.1
Q ss_pred hHHHHHhhcCcEEEEeccCCCH-HhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhcc
Q 037675 277 TFAARMAERNVTVITNTLNVDA-PYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRI 355 (418)
Q Consensus 277 ~faa~La~~gV~vv~~alD~s~-~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RV 355 (418)
.++..|...|..|+..++|.++ ..++.|.+.+ .|+|-.+..+.+. . ..+.++.+.
T Consensus 20 iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~------------------adiVglS~l~~~~--~----~~~~~~~~~ 75 (134)
T TIGR01501 20 ILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETK------------------ADAILVSSLYGHG--E----IDCKGLRQK 75 (134)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC------------------CCEEEEecccccC--H----HHHHHHHHH
Confidence 3567777789999977899986 5666666654 3555544433321 1 223344444
Q ss_pred ccCCc---EEEEEecc-cCchhHHHHHHHHHHHcCcEEE
Q 037675 356 LRAGG---LFWLDNFY-CANDEKKSALTRLIERFGYKKL 390 (418)
Q Consensus 356 LRPGG---~~ii~~~~-~~~ee~~~~~~~l~~~~Gfk~l 390 (418)
||-.| ..++..-. ...++..+...+.++++||..+
T Consensus 76 l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~v 114 (134)
T TIGR01501 76 CDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRV 114 (134)
T ss_pred HHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEE
Confidence 44333 33333322 1222322334556788998776
No 382
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=34.28 E-value=2.7e+02 Score=27.29 Aligned_cols=94 Identities=18% Similarity=0.125 Sum_probs=53.1
Q ss_pred cCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeeccc-------CCCCCCCCccceE
Q 037675 260 LGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLD-------HRFPFYDNVFDLV 330 (418)
Q Consensus 260 l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~-------e~LPf~d~sFDlV 330 (418)
+..|+ +||=.|||. |..+..+++. |+.++ ++++.++...+.+.+-|...++.... .++. ....+|++
T Consensus 166 ~~~g~--~vlI~g~g~vg~~~~~lak~~G~~~v-~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~-~~~~~d~i 241 (345)
T cd08287 166 VRPGS--TVVVVGDGAVGLCAVLAAKRLGAERI-IAMSRHEDRQALAREFGATDIVAERGEEAVARVRELT-GGVGADAV 241 (345)
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCEE-EEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCCCCEE
Confidence 44453 555577753 4455555554 76533 34566666666777777522222111 1121 33458888
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
+... .. ...+.++.+.|+++|.+++..
T Consensus 242 l~~~-----g~----~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 242 LECV-----GT----QESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred EECC-----CC----HHHHHHHHHhhccCCEEEEec
Confidence 7421 11 156779999999999987654
No 383
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=33.98 E-value=1e+02 Score=32.31 Aligned_cols=101 Identities=18% Similarity=0.068 Sum_probs=57.5
Q ss_pred CeEEEECCccC--hHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccC----------CCC--CCCCccceEE
Q 037675 266 RIGFDIGGGSG--TFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDH----------RFP--FYDNVFDLVH 331 (418)
Q Consensus 266 r~VLDvGCGtG--~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e----------~LP--f~d~sFDlV~ 331 (418)
.+|-=||.|.- .+|..|++.|..++ ++|.++..++.. .+|.++......+ .+. ...+.-|+|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~--~~D~~~~~v~~l-~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvi 80 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVI--GVDINQHAVDTI-NRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFL 80 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEE--EEeCCHHHHHHH-HCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEE
Confidence 46777888863 46778888887775 368888777643 4444343221100 011 1112467776
Q ss_pred ecC-cC-c--CCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675 332 ASS-GL-D--VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC 369 (418)
Q Consensus 332 s~~-~L-~--~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~ 369 (418)
..- .- . .-.+...++.++.++.+.||+|-.+++.....
T Consensus 81 i~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~ 122 (415)
T PRK11064 81 IAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP 122 (415)
T ss_pred EEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 531 11 0 01122456678889999999988776655433
No 384
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=33.95 E-value=51 Score=33.67 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=28.2
Q ss_pred ChhHHHHHHHHhhccccCCcEEEEEecccCchhH
Q 037675 341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEK 374 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~ 374 (418)
....++.+|...-++|+|||+++|-.|..-++.+
T Consensus 219 EL~~L~~~L~~a~~~L~~gGRl~VIsFHSLEDRi 252 (314)
T COG0275 219 ELEELEEALEAALDLLKPGGRLAVISFHSLEDRI 252 (314)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEecchHHHH
Confidence 3457889999999999999999998887765554
No 385
>PRK06545 prephenate dehydrogenase; Validated
Probab=33.53 E-value=2.8e+02 Score=28.37 Aligned_cols=92 Identities=14% Similarity=0.107 Sum_probs=48.7
Q ss_pred eEEEECCcc--ChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhH
Q 037675 267 IGFDIGGGS--GTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEK 344 (418)
Q Consensus 267 ~VLDvGCGt--G~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~ 344 (418)
+|.=||.|. |+++..|.+.|..+...+.|.+......+...|.+.......+. .....|+|+..- ++..
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~aDlVilav------P~~~ 72 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQR---AAAEADLIVLAV------PVDA 72 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHH---HhcCCCEEEEeC------CHHH
Confidence 455677776 56777887777544333456555444333333332211111111 124578888632 2234
Q ss_pred HHHHHHHhhcc-ccCCcEEEEEeccc
Q 037675 345 LEFLMFDFDRI-LRAGGLFWLDNFYC 369 (418)
Q Consensus 345 le~~L~Ei~RV-LRPGG~~ii~~~~~ 369 (418)
+..++.++... ++||- ++++...
T Consensus 73 ~~~vl~~l~~~~l~~~~--ivtDv~S 96 (359)
T PRK06545 73 TAALLAELADLELKPGV--IVTDVGS 96 (359)
T ss_pred HHHHHHHHhhcCCCCCc--EEEeCcc
Confidence 56888898874 88874 3444433
No 386
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=33.28 E-value=4.3e+02 Score=29.85 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=31.7
Q ss_pred hHHHHHHHHhhccc-cCCcEEEEEeccc-CchhHHHHHHHHHHHcC
Q 037675 343 EKLEFLMFDFDRIL-RAGGLFWLDNFYC-ANDEKKSALTRLIERFG 386 (418)
Q Consensus 343 ~~le~~L~Ei~RVL-RPGG~~ii~~~~~-~~ee~~~~~~~l~~~~G 386 (418)
..++..-.|+.++| +.||.++|.+... ...+..+.+..++...|
T Consensus 575 d~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g 620 (645)
T KOG1158|consen 575 DRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDG 620 (645)
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhC
Confidence 45678888999999 5599999988766 44555566666665543
No 387
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=32.38 E-value=1.1e+02 Score=26.46 Aligned_cols=88 Identities=22% Similarity=0.216 Sum_probs=51.7
Q ss_pred EEECCcc-C-hHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecc-------cCCC---CCCCCccceEEecCcC
Q 037675 269 FDIGGGS-G-TFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSL-------DHRF---PFYDNVFDLVHASSGL 336 (418)
Q Consensus 269 LDvGCGt-G-~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~-------~e~L---Pf~d~sFDlV~s~~~L 336 (418)
+=+|+|. | .+|.+|++.+..|.. +.-.+ .++...+.|+ .+.... .... +.....||+|+..-
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~V~l--~~r~~-~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v-- 75 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHDVTL--VSRSP-RLEAIKEQGL-TITGPDGDETVQPPIVISAPSADAGPYDLVIVAV-- 75 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCEEEE--EESHH-HHHHHHHHCE-EEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S--
T ss_pred EEECcCHHHHHHHHHHHHCCCceEE--EEccc-cHHhhhheeE-EEEecccceecccccccCcchhccCCCcEEEEEe--
Confidence 4467775 4 466777777755432 34444 5666777775 221111 1111 12467899998642
Q ss_pred cCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
.....+.++..+.+.+.|+..+++..
T Consensus 76 ----Ka~~~~~~l~~l~~~~~~~t~iv~~q 101 (151)
T PF02558_consen 76 ----KAYQLEQALQSLKPYLDPNTTIVSLQ 101 (151)
T ss_dssp ----SGGGHHHHHHHHCTGEETTEEEEEES
T ss_pred ----cccchHHHHHHHhhccCCCcEEEEEe
Confidence 11234589999999999998775543
No 388
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=32.20 E-value=3e+02 Score=26.93 Aligned_cols=94 Identities=19% Similarity=0.189 Sum_probs=52.6
Q ss_pred ccCCCCCCeEEEECCc-cChHHHHHhhc-CcE-EEEeccCCCHHhHHHHHHcCCCceeeccc-------CCCCCCCCccc
Q 037675 259 ALGSGGIRIGFDIGGG-SGTFAARMAER-NVT-VITNTLNVDAPYSEFIAARGLFPLYLSLD-------HRFPFYDNVFD 328 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCG-tG~faa~La~~-gV~-vv~~alD~s~~~l~~a~eRGli~~~~~~~-------e~LPf~d~sFD 328 (418)
.+.+|. +||=.|+| .|..+..+++. |+. ++ +...++...+.+.+-|...++.... .++ ...+.+|
T Consensus 162 ~~~~g~--~VlV~g~g~vg~~~~~la~~~g~~~v~--~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~vd 236 (343)
T cd08235 162 GIKPGD--TVLVIGAGPIGLLHAMLAKASGARKVI--VSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVREL-TDGRGAD 236 (343)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEE--EECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHH-hCCcCCC
Confidence 455553 66666865 45566666654 766 43 3455666666665556422221110 111 2234589
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
+|+.... . +..+.++.+.|+++|.++...
T Consensus 237 ~vld~~~-----~----~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 237 VVIVATG-----S----PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred EEEECCC-----C----hHHHHHHHHHhhcCCEEEEEe
Confidence 8885311 1 146678889999999987644
No 389
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=32.17 E-value=2.2e+02 Score=27.39 Aligned_cols=93 Identities=15% Similarity=0.122 Sum_probs=51.3
Q ss_pred ccCCCCCCeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC------CCCCccce
Q 037675 259 ALGSGGIRIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP------FYDNVFDL 329 (418)
Q Consensus 259 ~l~~g~~r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP------f~d~sFDl 329 (418)
.+.+| .+||=.|+ +.|..+..+++. |+.++. +.+ +....+.+++.|...++......+. ...+.+|+
T Consensus 136 ~~~~g--~~vlI~g~~g~ig~~~~~~a~~~G~~v~~-~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~ 211 (324)
T cd08292 136 GVKPG--QWLIQNAAGGAVGKLVAMLAAARGINVIN-LVR-RDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISV 211 (324)
T ss_pred CCCCC--CEEEEcccccHHHHHHHHHHHHCCCeEEE-Eec-CHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcE
Confidence 34555 36777775 357777777765 776642 233 3444555555665222221111110 22346899
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
|+... . . ..+.+..+.|+++|.++..
T Consensus 212 v~d~~--g---~-----~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 212 ALDSV--G---G-----KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred EEECC--C---C-----hhHHHHHHhhcCCcEEEEE
Confidence 88521 1 1 2346888999999998754
No 390
>PRK08507 prephenate dehydrogenase; Validated
Probab=32.01 E-value=2e+02 Score=27.91 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=49.9
Q ss_pred eEEEECCcc--ChHHHHHhhcCc--EEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCCh
Q 037675 267 IGFDIGGGS--GTFAARMAERNV--TVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP 342 (418)
Q Consensus 267 ~VLDvGCGt--G~faa~La~~gV--~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~ 342 (418)
+|.=||+|. |.++..|.+.|. .+. +.|.++...+.+.+.|.+....+ .+.+ . + .|+|+..- ++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~--~~d~~~~~~~~~~~~g~~~~~~~-~~~~--~-~-aD~Vilav------p~ 68 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVY--GYDHNELHLKKALELGLVDEIVS-FEEL--K-K-CDVIFLAI------PV 68 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEE--EEcCCHHHHHHHHHCCCCcccCC-HHHH--h-c-CCEEEEeC------cH
Confidence 355578776 457777777773 443 46888877777777776322211 1111 1 2 78888632 23
Q ss_pred hHHHHHHHHhhccccCCcEE
Q 037675 343 EKLEFLMFDFDRILRAGGLF 362 (418)
Q Consensus 343 ~~le~~L~Ei~RVLRPGG~~ 362 (418)
..+..++.++.. ++||..+
T Consensus 69 ~~~~~~~~~l~~-l~~~~iv 87 (275)
T PRK08507 69 DAIIEILPKLLD-IKENTTI 87 (275)
T ss_pred HHHHHHHHHHhc-cCCCCEE
Confidence 445577888888 8887643
No 391
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=31.81 E-value=1.1e+02 Score=31.16 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=48.7
Q ss_pred cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCc
Q 037675 260 LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 260 l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~ 337 (418)
+.+| ....|+|+-.|+++..|.+++..|. ++|. ..|.+-..+.|.+...-.+.-++--.....|-.+|..+=.
T Consensus 209 L~~~--M~avDLGAcPGGWTyqLVkr~m~V~--aVDn-g~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmVEk 281 (358)
T COG2933 209 LAPG--MWAVDLGACPGGWTYQLVKRNMRVY--AVDN-GPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMVEK 281 (358)
T ss_pred hcCC--ceeeecccCCCccchhhhhcceEEE--Eecc-chhhhhhhcccceeeeeccCcccccCCCCCceEEeehhcC
Confidence 4444 5799999999999999999987663 4574 4566666677765444333222211346789999866543
No 392
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=31.04 E-value=2.6e+02 Score=27.43 Aligned_cols=95 Identities=12% Similarity=0.061 Sum_probs=52.7
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC---CCCCccceEEec
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP---FYDNVFDLVHAS 333 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP---f~d~sFDlV~s~ 333 (418)
.+..+ .+||=.|+|. |..+..+++ .|..++ .++.++...+++.+-|....+......+. -..+.+|+|+..
T Consensus 160 ~~~~~--~~vlV~g~g~iG~~~~~~a~~~G~~vi--~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~ 235 (333)
T cd08296 160 GAKPG--DLVAVQGIGGLGHLAVQYAAKMGFRTV--AISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILAT 235 (333)
T ss_pred CCCCC--CEEEEECCcHHHHHHHHHHHHCCCeEE--EEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEEC
Confidence 44444 4788888643 444445554 477654 34666667778877775222211111110 001347888752
Q ss_pred CcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
. ... ..+.++.+.|+++|.++...
T Consensus 236 ~-----g~~----~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 236 A-----PNA----KAISALVGGLAPRGKLLILG 259 (333)
T ss_pred C-----Cch----HHHHHHHHHcccCCEEEEEe
Confidence 1 111 46778899999999987643
No 393
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=30.93 E-value=2.4e+02 Score=27.68 Aligned_cols=90 Identities=16% Similarity=0.038 Sum_probs=50.5
Q ss_pred CeEEEECCc-cChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeeccc-CCC-----CCCCCccceEEecCcCc
Q 037675 266 RIGFDIGGG-SGTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLD-HRF-----PFYDNVFDLVHASSGLD 337 (418)
Q Consensus 266 r~VLDvGCG-tG~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~-e~L-----Pf~d~sFDlV~s~~~L~ 337 (418)
++||=.|+| .|..+..+++ .|+.++ +++.+++..+.+.+.|...++.... +.+ .+..+.+|+|+..-
T Consensus 167 ~~vlV~g~g~vg~~~~~~a~~~G~~vi--~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~--- 241 (345)
T cd08260 167 EWVAVHGCGGVGLSAVMIASALGARVI--AVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDAL--- 241 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEE--EEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcC---
Confidence 367777764 2444455554 477764 3455666677776666522222111 111 11222689888631
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
.. . ..+.+..|.|+++|.++...
T Consensus 242 --g~-~---~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 242 --GI-P---ETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred --CC-H---HHHHHHHHHhhcCCEEEEeC
Confidence 11 1 45678899999999986543
No 394
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=30.81 E-value=5.2e+02 Score=25.32 Aligned_cols=114 Identities=11% Similarity=-0.016 Sum_probs=67.6
Q ss_pred eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHH----HHHHcCCCceee---cccCCCCCC-CCccceEEecCcCcC
Q 037675 267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSE----FIAARGLFPLYL---SLDHRFPFY-DNVFDLVHASSGLDV 338 (418)
Q Consensus 267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~----~a~eRGli~~~~---~~~e~LPf~-d~sFDlV~s~~~L~~ 338 (418)
++.||||=.|.++.+|.+.+..-.+++.|+++.-++ ...+.++...+. ++. -.++. +..+|.|+..++=-
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGMGG- 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGMGG- 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEeCCcH-
Confidence 499999999999999999874333345677654443 334455544432 222 12343 44799988754321
Q ss_pred CCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675 339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK 391 (418)
Q Consensus 339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~ 391 (418)
.-+..+|.|-..-|+-==++++ -|..+..+ +.+.+...+|.-..
T Consensus 97 ----~lI~~ILee~~~~l~~~~rlIL-QPn~~~~~----LR~~L~~~~~~I~~ 140 (226)
T COG2384 97 ----TLIREILEEGKEKLKGVERLIL-QPNIHTYE----LREWLSANSYEIKA 140 (226)
T ss_pred ----HHHHHHHHHhhhhhcCcceEEE-CCCCCHHH----HHHHHHhCCceeee
Confidence 1234666777776664334433 44444344 56667788887654
No 395
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.74 E-value=2.9e+02 Score=28.79 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=56.4
Q ss_pred cCCCCCCeEEEECCccChHHHHH-hhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeeccc----CCC------CCCCCc
Q 037675 260 LGSGGIRIGFDIGGGSGTFAARM-AER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLD----HRF------PFYDNV 326 (418)
Q Consensus 260 l~~g~~r~VLDvGCGtG~faa~L-a~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~----e~L------Pf~d~s 326 (418)
++.|+ +||=+|+|.=++..-+ ++. |. .++ ..|+.++-++.|++-|.-.+..... +.+ -+-...
T Consensus 167 vk~Gs--~vLV~GAGPIGl~t~l~Aka~GA~~VV--i~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 167 VKKGS--KVLVLGAGPIGLLTGLVAKAMGASDVV--ITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred cccCC--eEEEECCcHHHHHHHHHHHHcCCCcEE--EeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccC
Confidence 45564 8999999984444333 332 52 232 3699999999999977622221111 000 122244
Q ss_pred cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+|.++-..-++ ..+.-.-..+|+||.+++.+.
T Consensus 243 ~d~~~dCsG~~---------~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 243 PDVTFDCSGAE---------VTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred CCeEEEccCch---------HHHHHHHHHhccCCEEEEecc
Confidence 77777644333 334445668999999888764
No 396
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.65 E-value=3.5e+02 Score=26.47 Aligned_cols=89 Identities=18% Similarity=0.048 Sum_probs=50.2
Q ss_pred CCeEEEECCccC--hHHHHHhhcCcEEEEeccCCCHHhHHHHHH-----------cCCCce----------e-ecccCCC
Q 037675 265 IRIGFDIGGGSG--TFAARMAERNVTVITNTLNVDAPYSEFIAA-----------RGLFPL----------Y-LSLDHRF 320 (418)
Q Consensus 265 ~r~VLDvGCGtG--~faa~La~~gV~vv~~alD~s~~~l~~a~e-----------RGli~~----------~-~~~~e~L 320 (418)
+++|.=||+|.- .++..|+..|..++. .|.+++.++.+.+ +|..+. . .++.+.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l--~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 80 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLL--NDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED- 80 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEE--EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-
Confidence 356777899863 467778888876643 5777766654322 243221 1 111111
Q ss_pred CCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEE
Q 037675 321 PFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFW 363 (418)
Q Consensus 321 Pf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~i 363 (418)
-...|+|+..- ..+..-...++.++...++|+..++
T Consensus 81 ---~~~aD~Vieav----pe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 81 ---LADCDLVIEAA----TEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred ---hcCCCEEEEcC----cCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 13467777531 1122223467788999999988664
No 397
>PLN02256 arogenate dehydrogenase
Probab=30.05 E-value=2.8e+02 Score=27.86 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=49.5
Q ss_pred cCCCCCCeEEEECCcc--ChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCc
Q 037675 260 LGSGGIRIGFDIGGGS--GTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 260 l~~g~~r~VLDvGCGt--G~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~ 337 (418)
+.++...+|.=||+|. |.++..|.+.|..+.+ +|.+.. .+.+.+.|. ... .+.+.+ .....|+|+..-
T Consensus 31 ~~~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~--~d~~~~-~~~a~~~gv-~~~-~~~~e~--~~~~aDvVilav--- 100 (304)
T PLN02256 31 LEKSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLA--TSRSDY-SDIAAELGV-SFF-RDPDDF--CEEHPDVVLLCT--- 100 (304)
T ss_pred hccCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEE--EECccH-HHHHHHcCC-eee-CCHHHH--hhCCCCEEEEec---
Confidence 4445556888899885 4577777777766543 455442 345555565 221 111111 123468887522
Q ss_pred CCCChhHHHHHHHHh-hccccCCcE
Q 037675 338 VGGQPEKLEFLMFDF-DRILRAGGL 361 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei-~RVLRPGG~ 361 (418)
++..+..++.++ ...++||.+
T Consensus 101 ---p~~~~~~vl~~l~~~~l~~~~i 122 (304)
T PLN02256 101 ---SILSTEAVLRSLPLQRLKRSTL 122 (304)
T ss_pred ---CHHHHHHHHHhhhhhccCCCCE
Confidence 223455777777 456777763
No 398
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=29.73 E-value=3.3e+02 Score=26.60 Aligned_cols=90 Identities=27% Similarity=0.328 Sum_probs=51.7
Q ss_pred cCCCCCCeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCC----C-CCCCCccceEE
Q 037675 260 LGSGGIRIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHR----F-PFYDNVFDLVH 331 (418)
Q Consensus 260 l~~g~~r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~----L-Pf~d~sFDlV~ 331 (418)
+.+| .+||=.|+ +.|..+..+++. |+.++.+ +.+. ..+.+.+.|. ..+...... . -...+.+|+|+
T Consensus 175 ~~~g--~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~--~~~~-~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~d~vi 248 (350)
T cd08274 175 VGAG--ETVLVTGASGGVGSALVQLAKRRGAIVIAV--AGAA-KEEAVRALGA-DTVILRDAPLLADAKALGGEPVDVVA 248 (350)
T ss_pred CCCC--CEEEEEcCCcHHHHHHHHHHHhcCCEEEEE--eCch-hhHHHHhcCC-eEEEeCCCccHHHHHhhCCCCCcEEE
Confidence 4444 47888887 345566666654 7776532 3233 5666766675 222221111 1 12345699888
Q ss_pred ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
...- . ..+.++.+.|+++|.++..
T Consensus 249 ~~~g-------~---~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 249 DVVG-------G---PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred ecCC-------H---HHHHHHHHHhccCCEEEEe
Confidence 5321 1 3466889999999998753
No 399
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=29.58 E-value=39 Score=34.50 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=29.9
Q ss_pred hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHH
Q 037675 342 PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIER 384 (418)
Q Consensus 342 ~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~ 384 (418)
...++.+|..+..+|+|||+++|-.|..-++.. .+..+..
T Consensus 217 L~~L~~~L~~a~~~L~~gGrl~VISFHSLEDRi---VK~~f~~ 256 (310)
T PF01795_consen 217 LEELERGLEAAPDLLKPGGRLVVISFHSLEDRI---VKQFFRE 256 (310)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHH---HHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEecchhhHH---HHHHHHH
Confidence 357889999999999999999888887654443 3444444
No 400
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=28.49 E-value=4.1e+02 Score=26.06 Aligned_cols=92 Identities=18% Similarity=0.143 Sum_probs=50.5
Q ss_pred cCCCCCCeEEEECCcc-ChHHHHHhh-cC-cEEEEeccCCCHHhHHHHHHcCCCceeeccc-------CCCCCCCCccce
Q 037675 260 LGSGGIRIGFDIGGGS-GTFAARMAE-RN-VTVITNTLNVDAPYSEFIAARGLFPLYLSLD-------HRFPFYDNVFDL 329 (418)
Q Consensus 260 l~~g~~r~VLDvGCGt-G~faa~La~-~g-V~vv~~alD~s~~~l~~a~eRGli~~~~~~~-------e~LPf~d~sFDl 329 (418)
+.+| .+||=.|+|. |..+..+++ +| ..++. ++.++...+.+.+-|...++.... .++ ...+.+|+
T Consensus 164 ~~~g--~~vlI~g~g~~g~~~~~~a~~~G~~~v~~--~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~ 238 (345)
T cd08286 164 VKPG--DTVAIVGAGPVGLAALLTAQLYSPSKIIM--VDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLEL-TDGRGVDV 238 (345)
T ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHcCCCeEEE--EcCCHHHHHHHHHhCCCceeccccccHHHHHHHH-hCCCCCCE
Confidence 3444 3555567642 333344444 47 55542 566776667777766522222111 111 12346999
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
|+... ... ..+.++.|.|+++|.++..
T Consensus 239 vld~~-----g~~----~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 239 VIEAV-----GIP----ATFELCQELVAPGGHIANV 265 (345)
T ss_pred EEECC-----CCH----HHHHHHHHhccCCcEEEEe
Confidence 88532 111 4567888999999998754
No 401
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=28.25 E-value=1.5e+02 Score=30.32 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=48.9
Q ss_pred CeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCH-HhHHHHHHcCCCceeec-ccCCCCCCCCccceEEecCcCcCCCC
Q 037675 266 RIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDA-PYSEFIAARGLFPLYLS-LDHRFPFYDNVFDLVHASSGLDVGGQ 341 (418)
Q Consensus 266 r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~-~~l~~a~eRGli~~~~~-~~e~LPf~d~sFDlV~s~~~L~~~~~ 341 (418)
.+||=.|+|. |.++..+++. |..++ +++.+. ...+.+++-|....+.. ..+.+.-..+.+|+|+-.. ..
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~Ga~Vi--~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~-----G~ 252 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFGLRVT--VISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTV-----SA 252 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCeEE--EEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECC-----Cc
Confidence 4777788754 5566666654 77654 234443 33566666665222211 0000000002478887532 11
Q ss_pred hhHHHHHHHHhhccccCCcEEEEEe
Q 037675 342 PEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 342 ~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
. ..+.+..+.||+||.++...
T Consensus 253 ~----~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 253 E----HALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred H----HHHHHHHHhhcCCCEEEEEc
Confidence 1 35668888999999997654
No 402
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=28.16 E-value=4.3e+02 Score=24.72 Aligned_cols=92 Identities=18% Similarity=0.070 Sum_probs=52.8
Q ss_pred cCCCCCCeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeeccc----CCC-C-CCCCccceE
Q 037675 260 LGSGGIRIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLD----HRF-P-FYDNVFDLV 330 (418)
Q Consensus 260 l~~g~~r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~----e~L-P-f~d~sFDlV 330 (418)
+.+| .+||=.|+ +.|..+..+++. |+.++. .+.++...+.+.+.|....+.... +.+ . ...+.+|+|
T Consensus 134 ~~~g--~~vlI~g~~g~~g~~~~~~a~~~g~~v~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v 209 (320)
T cd05286 134 VKPG--DTVLVHAAAGGVGLLLTQWAKALGATVIG--TVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVV 209 (320)
T ss_pred CCCC--CEEEEEcCCchHHHHHHHHHHHcCCEEEE--EcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEE
Confidence 4455 47887884 356666666654 777653 355666677777777522222111 000 1 124568998
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
+... . . ..+.+..+.|+++|.++..
T Consensus 210 l~~~--~---~-----~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 210 YDGV--G---K-----DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred EECC--C---c-----HhHHHHHHhhccCcEEEEE
Confidence 8531 1 1 3455778899999988654
No 403
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=28.07 E-value=3.3e+02 Score=26.94 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=51.9
Q ss_pred eEEEECCcc--ChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhH
Q 037675 267 IGFDIGGGS--GTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEK 344 (418)
Q Consensus 267 ~VLDvGCGt--G~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~ 344 (418)
+|-=||+|. +.++..|++.|..++. .|.+++..+.+.+.|.... ...+.+--....-|+|+..- .+. .
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~--~dr~~~~~~~l~~~g~~~~--~s~~~~~~~~~~~dvIi~~v-----p~~-~ 71 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVG--YDHDQDAVKAMKEDRTTGV--ANLRELSQRLSAPRVVWVMV-----PHG-I 71 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEE--EECCHHHHHHHHHcCCccc--CCHHHHHhhcCCCCEEEEEc-----Cch-H
Confidence 345578876 2366777788877653 6888777776666664222 11111100112358877631 222 4
Q ss_pred HHHHHHHhhccccCCcEEEEEec
Q 037675 345 LEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 345 le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
.+.++.++...|+||- ++|+..
T Consensus 72 ~~~v~~~l~~~l~~g~-ivid~s 93 (298)
T TIGR00872 72 VDAVLEELAPTLEKGD-IVIDGG 93 (298)
T ss_pred HHHHHHHHHhhCCCCC-EEEECC
Confidence 5678889988898886 445543
No 404
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.50 E-value=1.5e+02 Score=28.99 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=50.2
Q ss_pred CeEEEECCcc--ChHHHHHhhcCcEEEEeccCCCHHhHH-----------HHHHcCCCceee--------cccCCCCCCC
Q 037675 266 RIGFDIGGGS--GTFAARMAERNVTVITNTLNVDAPYSE-----------FIAARGLFPLYL--------SLDHRFPFYD 324 (418)
Q Consensus 266 r~VLDvGCGt--G~faa~La~~gV~vv~~alD~s~~~l~-----------~a~eRGli~~~~--------~~~e~LPf~d 324 (418)
++|-=||+|. +.++..++..|..++. +|.+++.++ .+.++|...... ....... .-
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~--~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~ 80 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVM--VDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DL 80 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEE--EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hh
Confidence 4677789986 5677888888876653 587776664 233455322100 0000111 11
Q ss_pred CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEE
Q 037675 325 NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLF 362 (418)
Q Consensus 325 ~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ 362 (418)
...|+|+-.- ..+..-...++.++.+.++|+..+
T Consensus 81 ~~aDlVi~av----~e~~~~k~~~~~~l~~~~~~~~il 114 (282)
T PRK05808 81 KDADLVIEAA----TENMDLKKKIFAQLDEIAKPEAIL 114 (282)
T ss_pred ccCCeeeecc----cccHHHHHHHHHHHHhhCCCCcEE
Confidence 3467776421 111222238889999999998766
No 405
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=27.43 E-value=1.1e+02 Score=31.65 Aligned_cols=93 Identities=19% Similarity=0.104 Sum_probs=46.6
Q ss_pred CeEEEECCcc-ChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeec--ccCCCCCCCCccceEEecCcCcCCCC
Q 037675 266 RIGFDIGGGS-GTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLS--LDHRFPFYDNVFDLVHASSGLDVGGQ 341 (418)
Q Consensus 266 r~VLDvGCGt-G~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~--~~e~LPf~d~sFDlV~s~~~L~~~~~ 341 (418)
.+|+=+|+|. |..++..+. .|+.++ .+|.++...+.+........... ..+.+.-.-..+|+|+..-.......
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~--v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~ 245 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVT--ILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKA 245 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEE--EEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence 4688899985 555555554 476543 36777665554443321111111 11111111246899997532211111
Q ss_pred hhHHHHHHHHhhccccCCcEEE
Q 037675 342 PEKLEFLMFDFDRILRAGGLFW 363 (418)
Q Consensus 342 ~~~le~~L~Ei~RVLRPGG~~i 363 (418)
+. .+-.++.+.+|||+.++
T Consensus 246 p~---lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 246 PK---LVSNSLVAQMKPGAVIV 264 (370)
T ss_pred Cc---CcCHHHHhcCCCCCEEE
Confidence 11 12245666789998764
No 406
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.34 E-value=90 Score=29.05 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=36.0
Q ss_pred CcHHHHHHHHccCCCC-CCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHH
Q 037675 249 KNDFLIDDVLALGSGG-IRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFI 304 (418)
Q Consensus 249 ~y~~~I~~lL~l~~g~-~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a 304 (418)
.+..++..+|.+..+. ..+.+|+|.|.|..-..-+..| ...+ +++.++-.+...
T Consensus 56 AtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~--GvELNpwLVays 111 (199)
T KOG4058|consen 56 ATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAV--GVELNPWLVAYS 111 (199)
T ss_pred ccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCC--ceeccHHHHHHH
Confidence 3455777787764443 3689999999999877777766 2332 356776655443
No 407
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.25 E-value=3.2e+02 Score=26.76 Aligned_cols=94 Identities=16% Similarity=0.026 Sum_probs=50.2
Q ss_pred CeEEEECCcc--ChHHHHHhhcCcEEEEeccCCCHHhHHHHHH-----------cCCCcee--------ecccCCCCCCC
Q 037675 266 RIGFDIGGGS--GTFAARMAERNVTVITNTLNVDAPYSEFIAA-----------RGLFPLY--------LSLDHRFPFYD 324 (418)
Q Consensus 266 r~VLDvGCGt--G~faa~La~~gV~vv~~alD~s~~~l~~a~e-----------RGli~~~--------~~~~e~LPf~d 324 (418)
++|.=||+|. +..|..|++.|..|. ..|.+++.++.+.+ +|.+... ......+.-.-
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTT--LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 4677889986 356777777776554 25888776665432 1211100 00011111112
Q ss_pred CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675 325 NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 325 ~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
..-|+|+..-- .+.+-...++.++.+.++|+..+++.
T Consensus 80 ~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 80 ADADLVIEAVP----EKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred cCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 34677775321 12222336778899999998866443
No 408
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=27.23 E-value=1.6e+02 Score=28.84 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=60.6
Q ss_pred cCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHH----HHHHcCCC--ce--ee------cccCCC---C
Q 037675 260 LGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSE----FIAARGLF--PL--YL------SLDHRF---P 321 (418)
Q Consensus 260 l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~----~a~eRGli--~~--~~------~~~e~L---P 321 (418)
+..| .+.|+.+|||.=+-+.+|... ++.+. .+|. +++++ ...+.|.. .. ++ +|.+.| .
T Consensus 78 ~~~g-~~qvV~LGaGlDTr~~Rl~~~~~~~~~--EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~g 153 (260)
T TIGR00027 78 VAAG-IRQVVILGAGLDTRAYRLPWPDGTRVF--EVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAG 153 (260)
T ss_pred HhcC-CcEEEEeCCccccHHHhcCCCCCCeEE--ECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCC
Confidence 3444 568999999999888888644 45553 3443 33333 22322210 10 11 122322 1
Q ss_pred CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 322 FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 322 f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
|.+..-=++++-+++... +++....+|..+.+..-||+.++++..
T Consensus 154 fd~~~ptl~i~EGvl~YL-~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 154 FDPTAPTAWLWEGLLMYL-TEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred CCCCCCeeeeecchhhcC-CHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 323333455666666655 456678899999998889999888653
No 409
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=27.21 E-value=1.1e+02 Score=25.23 Aligned_cols=101 Identities=16% Similarity=0.125 Sum_probs=57.7
Q ss_pred CccChHHHHHh----hcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC----CCCCccceEEecCcCcCCCChhH
Q 037675 273 GGSGTFAARMA----ERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP----FYDNVFDLVHASSGLDVGGQPEK 344 (418)
Q Consensus 273 CGtG~faa~La----~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP----f~d~sFDlV~s~~~L~~~~~~~~ 344 (418)
||.|.++..++ +.+..++ .+|.++...+.+.++|. .++.++..+.. ..-+..|.|++..- + +.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vv--vid~d~~~~~~~~~~~~-~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----~-d~ 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVV--VIDRDPERVEELREEGV-EVIYGDATDPEVLERAGIEKADAVVILTD-----D-DE 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEE--EEESSHHHHHHHHHTTS-EEEES-TTSHHHHHHTTGGCESEEEEESS-----S-HH
T ss_pred EcCCHHHHHHHHHHHhCCCEEE--EEECCcHHHHHHHhccc-ccccccchhhhHHhhcCccccCEEEEccC-----C-HH
Confidence 56666665554 3354443 36899988999999995 77776543321 12346777776421 1 22
Q ss_pred HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEE
Q 037675 345 LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKK 389 (418)
Q Consensus 345 le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~ 389 (418)
....+....|-+-|...++.... .++ ..+.++.+|...
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~~~---~~~----~~~~l~~~g~d~ 112 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIARVN---DPE----NAELLRQAGADH 112 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEES---SHH----HHHHHHHTT-SE
T ss_pred HHHHHHHHHHHHCCCCeEEEEEC---CHH----HHHHHHHCCcCE
Confidence 23556667777788887765432 112 345566666644
No 410
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=26.73 E-value=3.5e+02 Score=26.72 Aligned_cols=95 Identities=15% Similarity=0.069 Sum_probs=51.6
Q ss_pred ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeeccc-C----CCC--CCCCccce
Q 037675 259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLD-H----RFP--FYDNVFDL 329 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~-e----~LP--f~d~sFDl 329 (418)
.+.+|+ +||=.|+|. |..+..+++. |+.++ ++++.++...+.+.+.|. ..+.... . .+. .....+|+
T Consensus 171 ~~~~g~--~vlI~g~g~vG~~~~~~a~~~G~~~v-~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~~~~~vdv 246 (350)
T cd08256 171 NIKFDD--VVVLAGAGPLGLGMIGAARLKNPKKL-IVLDLKDERLALARKFGA-DVVLNPPEVDVVEKIKELTGGYGCDI 246 (350)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEE-EEEcCCHHHHHHHHHcCC-cEEecCCCcCHHHHHHHHhCCCCCCE
Confidence 345553 454466533 4444555554 75543 345667776777777775 2222111 0 010 12345898
Q ss_pred EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
|+... ... ..+.+..+.|+++|.++.-.
T Consensus 247 vld~~-----g~~----~~~~~~~~~l~~~G~~v~~g 274 (350)
T cd08256 247 YIEAT-----GHP----SAVEQGLNMIRKLGRFVEFS 274 (350)
T ss_pred EEECC-----CCh----HHHHHHHHHhhcCCEEEEEc
Confidence 87531 111 35678899999999986543
No 411
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=26.72 E-value=1.3e+02 Score=32.53 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=38.8
Q ss_pred CCccChHHHHHhhcCcEEEEeccCCCH-HhHHHHHHcCCCceeec-ccCCCCCCCCccceEEecCcCc
Q 037675 272 GGGSGTFAARMAERNVTVITNTLNVDA-PYSEFIAARGLFPLYLS-LDHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 272 GCGtG~faa~La~~gV~vv~~alD~s~-~~l~~a~eRGli~~~~~-~~e~LPf~d~sFDlV~s~~~L~ 337 (418)
|.|.+++|..|.++|..|-| .|... .+.+...+.|. ..+.+ +.+.+.- -|.|+.+.++.
T Consensus 17 G~GMsglA~iL~~~G~~VsG--SD~~~~~~t~~L~~~G~-~i~~gh~~~ni~~----~~~VV~s~Ai~ 77 (459)
T COG0773 17 GIGMSGLAEILLNLGYKVSG--SDLAESPMTQRLEALGI-EIFIGHDAENILD----ADVVVVSNAIK 77 (459)
T ss_pred cccHHHHHHHHHhCCCceEC--ccccccHHHHHHHHCCC-eEeCCCCHHHcCC----CceEEEecccC
Confidence 45667899999999999865 56543 38888888987 66554 3343332 22266666665
No 412
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=26.35 E-value=54 Score=31.69 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=24.5
Q ss_pred CeEEEECCccChHHHHHhhc---C-------cEEEEeccCCCHHhHHHHHH
Q 037675 266 RIGFDIGGGSGTFAARMAER---N-------VTVITNTLNVDAPYSEFIAA 306 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~---g-------V~vv~~alD~s~~~l~~a~e 306 (418)
-+|+++|+|.|.++..+.+. . +... -++.|+.+.+.-++
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~--ivE~Sp~L~~~Q~~ 68 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYH--IVEISPYLRERQKE 68 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEE--EE-TTCCCHHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEE--EEcCCHHHHHHHHH
Confidence 48999999999999776653 1 2222 26888766654444
No 413
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=26.10 E-value=4.6e+02 Score=25.55 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=52.0
Q ss_pred cCCCCCCeEEEECCcc-ChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeecccCC----------CCCCCCcc
Q 037675 260 LGSGGIRIGFDIGGGS-GTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHR----------FPFYDNVF 327 (418)
Q Consensus 260 l~~g~~r~VLDvGCGt-G~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~----------LPf~d~sF 327 (418)
+.+| .+||=.|+|. |..+..+++ .|+.++ ++.+.++...+.+.+-|. ..+.+..+. .-...+.+
T Consensus 159 ~~~g--~~VlI~g~g~vg~~~~~la~~~G~~~v-~~~~~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~ 234 (341)
T cd08262 159 LTPG--EVALVIGCGPIGLAVIAALKARGVGPI-VASDFSPERRALALAMGA-DIVVDPAADSPFAAWAAELARAGGPKP 234 (341)
T ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHcCCcEE-EEECCCHHHHHHHHHcCC-cEEEcCCCcCHHHHHHHHHHHhCCCCC
Confidence 4445 4677677532 334444444 376533 235667777777777665 222221110 01234568
Q ss_pred ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
|+|+-. . ... ..+.+..+.|+++|.++....
T Consensus 235 d~vid~--~---g~~----~~~~~~~~~l~~~g~~v~~g~ 265 (341)
T cd08262 235 AVIFEC--V---GAP----GLIQQIIEGAPPGGRIVVVGV 265 (341)
T ss_pred CEEEEC--C---CCH----HHHHHHHHHhccCCEEEEECC
Confidence 988742 1 111 356788899999999876543
No 414
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=25.50 E-value=3.3e+02 Score=26.21 Aligned_cols=88 Identities=14% Similarity=0.185 Sum_probs=52.2
Q ss_pred CeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeeccc----CCC-CCCCCccceEEecCcCc
Q 037675 266 RIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLD----HRF-PFYDNVFDLVHASSGLD 337 (418)
Q Consensus 266 r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~----e~L-Pf~d~sFDlV~s~~~L~ 337 (418)
++||=.|+ +.|..+..+++. |+.++ .++.++...+.+.+.|. ..+.... +.+ .+..+.+|+|+...
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~--~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~~~~d~vld~~--- 221 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLGYEVV--ASTGKADAADYLKKLGA-KEVIPREELQEESIKPLEKQRWAGAVDPV--- 221 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCeEE--EEecCHHHHHHHHHcCC-CEEEcchhHHHHHHHhhccCCcCEEEECC---
Confidence 47887886 346666666654 77764 34556666777777775 2222110 100 11235588876421
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
. . ..+.+..+.|+++|.++...
T Consensus 222 --g---~--~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 222 --G---G--KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred --c---H--HHHHHHHHHhhcCCEEEEEe
Confidence 1 1 35668899999999987654
No 415
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=25.36 E-value=7.1e+02 Score=27.76 Aligned_cols=104 Identities=16% Similarity=0.127 Sum_probs=56.2
Q ss_pred CeEEEECCccCh--HHHHHhhc---C----cEEEEec-cCCCH-----HhHHHHHHcCCCceeecccCCCCCCCCccceE
Q 037675 266 RIGFDIGGGSGT--FAARMAER---N----VTVITNT-LNVDA-----PYSEFIAARGLFPLYLSLDHRFPFYDNVFDLV 330 (418)
Q Consensus 266 r~VLDvGCGtG~--faa~La~~---g----V~vv~~a-lD~s~-----~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV 330 (418)
..|+=||.|||- |-+.+.++ + +|.. ++ .+... ...+...+.|..-. .|++
T Consensus 441 ~PiIMIG~GTGIAPFRafvq~r~~~~~~gk~wLf-FG~R~~~~DfLY~~Ewe~~~~~G~~~~--------------l~~A 505 (587)
T COG0369 441 TPIIMIGPGTGIAPFRAFVQERAANGAEGKNWLF-FGCRHFTEDFLYQEEWEEYLKDGVLTR--------------LDLA 505 (587)
T ss_pred CceEEEcCCCCchhHHHHHHHHHhccccCceEEE-ecCCCCccchhhHHHHHHHHhcCCcee--------------EEEE
Confidence 569999999994 44455443 2 4444 44 33222 34455566664111 2222
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe-cccCchhHHHHHHHHHHH
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN-FYCANDEKKSALTRLIER 384 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~-~~~~~ee~~~~~~~l~~~ 384 (418)
++..--+...-.+.+..--.|+.++|.-||.|++.+ ......+..+.+..++..
T Consensus 506 fSRdq~~KiYVQd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~ 560 (587)
T COG0369 506 FSRDQEEKIYVQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAK 560 (587)
T ss_pred EeecCCCCccHHHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHh
Confidence 222111111111233445568999999999999988 444445555556665554
No 416
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=25.32 E-value=3.6e+02 Score=27.29 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=52.2
Q ss_pred cCCCCCCeEEEECCcc-ChHHHHHhh-cCc-EEEEeccCCCHHhHHHHHHcCCCceeecc-----------cCCCCCCCC
Q 037675 260 LGSGGIRIGFDIGGGS-GTFAARMAE-RNV-TVITNTLNVDAPYSEFIAARGLFPLYLSL-----------DHRFPFYDN 325 (418)
Q Consensus 260 l~~g~~r~VLDvGCGt-G~faa~La~-~gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~-----------~e~LPf~d~ 325 (418)
+..|. +||=.|+|. |..+..+++ +|+ .++ +++.++...+.+.+-|. ..+... ..++ ...+
T Consensus 201 ~~~g~--~VlV~g~g~vG~~ai~lA~~~G~~~vi--~~~~~~~~~~~~~~~g~-~~~v~~~~~~~~~~~~~v~~~-~~g~ 274 (384)
T cd08265 201 FRPGA--YVVVYGAGPIGLAAIALAKAAGASKVI--AFEISEERRNLAKEMGA-DYVFNPTKMRDCLSGEKVMEV-TKGW 274 (384)
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEE--EEcCCHHHHHHHHHcCC-CEEEcccccccccHHHHHHHh-cCCC
Confidence 44553 566567653 334444554 376 454 34666666677777775 222211 1112 2335
Q ss_pred ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
.+|+|+... .... ..+.++.+.|+++|.++..+
T Consensus 275 gvDvvld~~-----g~~~---~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 275 GADIQVEAA-----GAPP---ATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCEEEECC-----CCcH---HHHHHHHHHHHcCCEEEEEC
Confidence 689888531 1111 45778899999999997643
No 417
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=24.99 E-value=5.2e+02 Score=24.54 Aligned_cols=86 Identities=21% Similarity=0.172 Sum_probs=52.0
Q ss_pred CeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCCh
Q 037675 266 RIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP 342 (418)
Q Consensus 266 r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~ 342 (418)
.+||=.|+ +.|..+..+++. |..++. ++.++...+.+++.|.. ......++ +.++.+|+++... ..
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g~~v~~--~~~~~~~~~~~~~~g~~-~~~~~~~~--~~~~~~d~vl~~~-----g~- 202 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAGAHVVA--VVGSPARAEGLRELGAA-EVVVGGSE--LSGAPVDLVVDSV-----GG- 202 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCEEEE--EeCCHHHHHHHHHcCCc-EEEecccc--ccCCCceEEEECC-----Cc-
Confidence 47887887 455666556554 776543 35566677777777752 22211122 2235689888531 11
Q ss_pred hHHHHHHHHhhccccCCcEEEEEe
Q 037675 343 EKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 343 ~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
..+.+..+.|+++|.++...
T Consensus 203 ----~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 203 ----PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred ----HHHHHHHHHhcCCCEEEEEe
Confidence 34568899999999987543
No 418
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=24.78 E-value=2.6e+02 Score=27.24 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=45.4
Q ss_pred cChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC-----C-CCCCccceEEecCcCcCCCChhHHHH
Q 037675 275 SGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF-----P-FYDNVFDLVHASSGLDVGGQPEKLEF 347 (418)
Q Consensus 275 tG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L-----P-f~d~sFDlV~s~~~L~~~~~~~~le~ 347 (418)
.|.++..+++. |+.++ +.+.++...+.+++-|....+....+.+ . ...+.+|+|+-.- .. .
T Consensus 156 vG~~a~q~a~~~G~~vi--~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~-----g~-----~ 223 (324)
T cd08291 156 LGRMLVRLCKADGIKVI--NIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAV-----GG-----G 223 (324)
T ss_pred HHHHHHHHHHHcCCEEE--EEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECC-----Cc-----H
Confidence 46666666664 77754 3466677777777766532322111111 0 1234689888522 11 2
Q ss_pred HHHHhhccccCCcEEEEEe
Q 037675 348 LMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 348 ~L~Ei~RVLRPGG~~ii~~ 366 (418)
.+.+..+.|++||.++...
T Consensus 224 ~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 224 LTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred HHHHHHHhhCCCCEEEEEE
Confidence 2345678899999987654
No 419
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.58 E-value=1.7e+02 Score=29.89 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=50.3
Q ss_pred CCCeEEEECCcc--ChHHHHHhhcCcEEEEeccCCCHHhHHHHHH-----------cCCCceeecccCCCCCC------C
Q 037675 264 GIRIGFDIGGGS--GTFAARMAERNVTVITNTLNVDAPYSEFIAA-----------RGLFPLYLSLDHRFPFY------D 324 (418)
Q Consensus 264 ~~r~VLDvGCGt--G~faa~La~~gV~vv~~alD~s~~~l~~a~e-----------RGli~~~~~~~e~LPf~------d 324 (418)
.+++|-=||+|+ .+++..++..|..|+. .|.++..++.+.+ .|+.+. ....++-+. -
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l--~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~i~~~~~l~~av 81 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVA--WDPAPGAEAALRANVANAWPALERQGLAPG--ASPARLRFVATIEACV 81 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEE--EeCCHHHHHHHHHHHHHHHHHHHHcCCChh--hHHhhceecCCHHHHh
Confidence 467888999996 3678888888877753 5777655443221 232110 000111111 1
Q ss_pred CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEE
Q 037675 325 NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLF 362 (418)
Q Consensus 325 ~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ 362 (418)
..-|+|+-+ +.... +--..++.++.++++|+-.+
T Consensus 82 ~~aDlViEa-vpE~l---~vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 82 ADADFIQES-APERE---ALKLELHERISRAAKPDAII 115 (321)
T ss_pred cCCCEEEEC-CcCCH---HHHHHHHHHHHHhCCCCeEE
Confidence 335666643 12222 22236778999999998744
No 420
>KOG3674 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=24.36 E-value=64 Score=35.13 Aligned_cols=44 Identities=34% Similarity=0.535 Sum_probs=31.2
Q ss_pred CCccceEEecCcCcCCCChhHHHHHHH-----H---hhccccCCcEEEEEec
Q 037675 324 DNVFDLVHASSGLDVGGQPEKLEFLMF-----D---FDRILRAGGLFWLDNF 367 (418)
Q Consensus 324 d~sFDlV~s~~~L~~~~~~~~le~~L~-----E---i~RVLRPGG~~ii~~~ 367 (418)
.+++|+|.+.+.+.-...+...|.++. | ..|+|+.||.|++-.+
T Consensus 224 ~gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~AL~~L~~gG~filKmf 275 (696)
T KOG3674|consen 224 AGTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVALKLLRRGGRFILKMF 275 (696)
T ss_pred hceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHHHHHHhcCCeehHHHH
Confidence 567888888887776665555554433 2 3578999999988765
No 421
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=24.09 E-value=2.4e+02 Score=25.73 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=49.1
Q ss_pred CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhHH
Q 037675 266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKL 345 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~l 345 (418)
++||=+|-=.-.+...|.+..+.+.... .+.........+. .....-...+|. ...||.|+- -+-..++..
T Consensus 14 k~vL~~g~~~D~~~~~L~~~~~~v~~~~--~~~~~~~~~~~~~--~~~~~f~~~~~~-~~~~D~vvl----y~PKaK~e~ 84 (155)
T PF08468_consen 14 KSVLFAGDPQDDLPAQLPAIAVSVHVFS--YHHWYALQKQAQS--NVQFHFGAELPA-DQDFDTVVL----YWPKAKAEA 84 (155)
T ss_dssp -EEEEEE---SSHHHHS--SEEEEEESB--HHHHHHHHHHHGG--GEEE-SS--HHH-HTT-SEEEE----E--SSHHHH
T ss_pred CeEEEEcCCchhhHHHhhhcCCEEEEEE--chHHHHHhHhccc--CceEeeeccCCc-ccCCCEEEE----EccCcHHHH
Confidence 4688888777788888886654443222 1111111111111 222221122222 356999983 445566777
Q ss_pred HHHHHHhhccccCCcEEEEEecccCc
Q 037675 346 EFLMFDFDRILRAGGLFWLDNFYCAN 371 (418)
Q Consensus 346 e~~L~Ei~RVLRPGG~~ii~~~~~~~ 371 (418)
...|..+...|+|||-++|.+....+
T Consensus 85 ~~lL~~l~~~L~~g~~i~vVGEnk~G 110 (155)
T PF08468_consen 85 QYLLANLLSHLPPGTEIFVVGENKGG 110 (155)
T ss_dssp HHHHHHHHTTS-TT-EEEEEEEGGGT
T ss_pred HHHHHHHHHhCCCCCEEEEEecCccc
Confidence 88899999999999999998876554
No 422
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=24.04 E-value=4.3e+02 Score=25.64 Aligned_cols=87 Identities=20% Similarity=0.249 Sum_probs=51.0
Q ss_pred CeEEEECC--ccChHHHHHhh-c-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC-----CCCCCccceEEecCcC
Q 037675 266 RIGFDIGG--GSGTFAARMAE-R-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF-----PFYDNVFDLVHASSGL 336 (418)
Q Consensus 266 r~VLDvGC--GtG~faa~La~-~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L-----Pf~d~sFDlV~s~~~L 336 (418)
.+||=.|+ +.|..+..+++ . |+.++. +..++...+.+.+-|. ..+.+..+.+ ....+.+|+|+...
T Consensus 150 ~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~--~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~i~~~~~~~vd~vl~~~-- 224 (336)
T TIGR02817 150 RALLIIGGAGGVGSILIQLARQLTGLTVIA--TASRPESQEWVLELGA-HHVIDHSKPLKAQLEKLGLEAVSYVFSLT-- 224 (336)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHhCCCEEEE--EcCcHHHHHHHHHcCC-CEEEECCCCHHHHHHHhcCCCCCEEEEcC--
Confidence 47777775 56777777776 4 777653 3445556666766665 2222211111 02234688887421
Q ss_pred cCCCChhHHHHHHHHhhccccCCcEEEE
Q 037675 337 DVGGQPEKLEFLMFDFDRILRAGGLFWL 364 (418)
Q Consensus 337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii 364 (418)
.. ...+.++.+.|+++|.++.
T Consensus 225 ---~~----~~~~~~~~~~l~~~G~~v~ 245 (336)
T TIGR02817 225 ---HT----DQHFKEIVELLAPQGRFAL 245 (336)
T ss_pred ---Cc----HHHHHHHHHHhccCCEEEE
Confidence 01 1456788999999998864
No 423
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=23.88 E-value=5.7e+02 Score=24.64 Aligned_cols=88 Identities=17% Similarity=0.101 Sum_probs=49.6
Q ss_pred eEEEECCcc-C-hHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecc-------cCCCCCCCCccceEEecCcCc
Q 037675 267 IGFDIGGGS-G-TFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSL-------DHRFPFYDNVFDLVHASSGLD 337 (418)
Q Consensus 267 ~VLDvGCGt-G-~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~-------~e~LPf~d~sFDlV~s~~~L~ 337 (418)
+|+=+|+|. | .+|..|++.|..+.. ++.+++.++.+.+.|+ ....+. ..... ....+|+|+..-=
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~--~~r~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k-- 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTL--VARRGAHLDALNENGL-RLEDGEITVPVLAADDPA-ELGPQDLVILAVK-- 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEE--EECChHHHHHHHHcCC-cccCCceeecccCCCChh-HcCCCCEEEEecc--
Confidence 467788876 3 466777777755432 3555556666666665 110110 11111 1156898886321
Q ss_pred CCCChhHHHHHHHHhhccccCCcEEEE
Q 037675 338 VGGQPEKLEFLMFDFDRILRAGGLFWL 364 (418)
Q Consensus 338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii 364 (418)
...++.++.++...+.++..++.
T Consensus 76 ----~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 76 ----AYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred ----cccHHHHHHHHhhhcCCCCEEEE
Confidence 11345788888888888776644
No 424
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=23.82 E-value=5e+02 Score=25.36 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=53.4
Q ss_pred ccCCCCCCeEEEECCc--cChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeeccc-----CCCC--CCCCccc
Q 037675 259 ALGSGGIRIGFDIGGG--SGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLD-----HRFP--FYDNVFD 328 (418)
Q Consensus 259 ~l~~g~~r~VLDvGCG--tG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~-----e~LP--f~d~sFD 328 (418)
.+..+ .+||=.|+| .|..++.+++. |+.++. +..++...+.+.+-|. ..+.... +.+. ...+.+|
T Consensus 162 ~~~~~--~~vlV~g~~~~vg~~~~~~a~~~g~~v~~--~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~~~~~vd 236 (341)
T cd08297 162 GLKPG--DWVVISGAGGGLGHLGVQYAKAMGLRVIA--IDVGDEKLELAKELGA-DAFVDFKKSDDVEAVKELTGGGGAH 236 (341)
T ss_pred CCCCC--CEEEEECCCchHHHHHHHHHHHCCCeEEE--EeCCHHHHHHHHHcCC-cEEEcCCCccHHHHHHHHhcCCCCC
Confidence 34444 477777765 56677777665 776643 3445555666655554 2222111 1010 1235688
Q ss_pred eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
+|+....- ...+.+..|.|+++|.++...
T Consensus 237 ~vl~~~~~---------~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 237 AVVVTAVS---------AAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred EEEEcCCc---------hHHHHHHHHHhhcCCEEEEec
Confidence 88742110 145678899999999997643
No 425
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=23.68 E-value=4.7e+02 Score=26.87 Aligned_cols=88 Identities=19% Similarity=0.182 Sum_probs=50.3
Q ss_pred CeEEEEC-Cc-cChHHHHHhhc-Cc---EEEEeccCCCHHhHHHHHHc--------CCCceeeccc--CCC-----C-CC
Q 037675 266 RIGFDIG-GG-SGTFAARMAER-NV---TVITNTLNVDAPYSEFIAAR--------GLFPLYLSLD--HRF-----P-FY 323 (418)
Q Consensus 266 r~VLDvG-CG-tG~faa~La~~-gV---~vv~~alD~s~~~l~~a~eR--------Gli~~~~~~~--e~L-----P-f~ 323 (418)
.+||=+| +| .|.++..+++. |. .++ ++|.++..++++++. |......+.. +.+ . ..
T Consensus 177 ~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi--~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~ 254 (410)
T cd08238 177 GNTAILGGAGPMGLMAIDYAIHGPIGPSLLV--VTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTG 254 (410)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhcccCCceEE--EEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhC
Confidence 3777776 34 57777777765 32 343 468888888888775 3211112111 111 0 12
Q ss_pred CCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEE
Q 037675 324 DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWL 364 (418)
Q Consensus 324 d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii 364 (418)
.+.||.|+... ... ..+.+..+.||++|.+++
T Consensus 255 g~g~D~vid~~-----g~~----~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 255 GQGFDDVFVFV-----PVP----ELVEEADTLLAPDGCLNF 286 (410)
T ss_pred CCCCCEEEEcC-----CCH----HHHHHHHHHhccCCeEEE
Confidence 34688887521 111 566788899998886643
No 426
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=23.44 E-value=5.2e+02 Score=26.16 Aligned_cols=102 Identities=18% Similarity=0.134 Sum_probs=58.8
Q ss_pred CeEEEECCccChHHHHHh----hcCcEEEEeccCCCHHhHHHHH---Hc---CCCcee--ec-ccCCCCCCCCc--cceE
Q 037675 266 RIGFDIGGGSGTFAARMA----ERNVTVITNTLNVDAPYSEFIA---AR---GLFPLY--LS-LDHRFPFYDNV--FDLV 330 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La----~~gV~vv~~alD~s~~~l~~a~---eR---Gli~~~--~~-~~e~LPf~d~s--FDlV 330 (418)
-+.+|+|.|+-.=++.|. .+|...--+.+|+++..++... .+ ++ ++. .+ ....|.-.++. ==++
T Consensus 80 ~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l-~v~~l~~~~~~~La~~~~~~~Rl~~ 158 (321)
T COG4301 80 CTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL-EVNALCGDYELALAELPRGGRRLFV 158 (321)
T ss_pred ceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC-eEeehhhhHHHHHhcccCCCeEEEE
Confidence 489999999987666554 4453322234799988775322 22 22 221 12 12222212222 2233
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC 369 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~ 369 (418)
+-...+-+..+. .-..+|..+..+|+||-+|.+..-.+
T Consensus 159 flGStlGN~tp~-e~~~Fl~~l~~a~~pGd~~LlGvDl~ 196 (321)
T COG4301 159 FLGSTLGNLTPG-ECAVFLTQLRGALRPGDYFLLGVDLR 196 (321)
T ss_pred EecccccCCChH-HHHHHHHHHHhcCCCcceEEEecccc
Confidence 445666665433 33478999999999999998865433
No 427
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=23.28 E-value=1.9e+02 Score=30.42 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=62.8
Q ss_pred CCeEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHHHHc---C--C-CceeecccCCCCCC-CCccceEEecCc
Q 037675 265 IRIGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFIAAR---G--L-FPLYLSLDHRFPFY-DNVFDLVHASSG 335 (418)
Q Consensus 265 ~r~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a~eR---G--l-i~~~~~~~e~LPf~-d~sFDlV~s~~~ 335 (418)
..+|+|.=+|||.=+.+.+.. + ++++ .-|+++..++.+++. + . ...+..++..+=.. .+.||.|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~--lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID---- 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVV--LNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID---- 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEE--EccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe----
Confidence 468999999999888777654 4 4554 358888888776653 2 1 11222333333221 37788876
Q ss_pred CcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675 336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367 (418)
Q Consensus 336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~ 367 (418)
+.++..+. -++.-..|..|.||++.++..
T Consensus 127 iDPFGSPa---PFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 127 IDPFGSPA---PFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred cCCCCCCc---hHHHHHHHHhhcCCEEEEEec
Confidence 56666665 788888899999999988753
No 428
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=23.07 E-value=4e+02 Score=25.43 Aligned_cols=93 Identities=19% Similarity=0.062 Sum_probs=50.6
Q ss_pred cCCCCCCeEEEECCc--cChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeeccc----CCC--CCCCCccceE
Q 037675 260 LGSGGIRIGFDIGGG--SGTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLD----HRF--PFYDNVFDLV 330 (418)
Q Consensus 260 l~~g~~r~VLDvGCG--tG~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~----e~L--Pf~d~sFDlV 330 (418)
+..+ .+||=.|.+ .|..++.++. .|+.++. .+.++...+.+.+.+....+.... +.+ -...+.+|++
T Consensus 164 ~~~~--~~vlI~g~~~~iG~~~~~~~~~~g~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 239 (342)
T cd08266 164 LRPG--ETVLVHGAGSGVGSAAIQIAKLFGATVIA--TAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVV 239 (342)
T ss_pred CCCC--CEEEEECCCchHHHHHHHHHHHcCCEEEE--EeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEE
Confidence 4444 478878875 4555555544 4777642 355555566665555411111100 000 0123468888
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
+.... . ..+.++.+.|+++|.++...
T Consensus 240 i~~~g-------~---~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 240 VEHVG-------A---ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred EECCc-------H---HHHHHHHHHhhcCCEEEEEe
Confidence 86421 1 33557778999999887543
No 429
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=22.75 E-value=1e+02 Score=33.48 Aligned_cols=91 Identities=10% Similarity=0.044 Sum_probs=52.2
Q ss_pred eEEEECCcc-C-hHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC----CCCCccceEEecCcCcCCC
Q 037675 267 IGFDIGGGS-G-TFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP----FYDNVFDLVHASSGLDVGG 340 (418)
Q Consensus 267 ~VLDvGCGt-G-~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP----f~d~sFDlV~s~~~L~~~~ 340 (418)
.++=+|||. | ..+..|.++|..++ .+|.+++.++.+++.|. +.+.++..+-. -.-+..|.|++.- . +
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~vv--vId~d~~~~~~~~~~g~-~~i~GD~~~~~~L~~a~i~~a~~viv~~--~--~ 491 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIPLV--VIETSRTRVDELRERGI-RAVLGNAANEEIMQLAHLDCARWLLLTI--P--N 491 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCCEE--EEECCHHHHHHHHHCCC-eEEEcCCCCHHHHHhcCccccCEEEEEc--C--C
Confidence 455566654 2 23344555676554 36999999999988886 77776554321 1224677665421 1 1
Q ss_pred ChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 341 QPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
+.++ ..+....|...|.-.++...
T Consensus 492 ~~~~--~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 492 GYEA--GEIVASAREKRPDIEIIARA 515 (558)
T ss_pred hHHH--HHHHHHHHHHCCCCeEEEEE
Confidence 1122 23445557778888776653
No 430
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.53 E-value=1.5e+02 Score=28.15 Aligned_cols=45 Identities=27% Similarity=0.211 Sum_probs=34.1
Q ss_pred CCCCccceEEecCcCcCCCC---------hhHHHHHHHHhhccccCCcEEEEEe
Q 037675 322 FYDNVFDLVHASSGLDVGGQ---------PEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 322 f~d~sFDlV~s~~~L~~~~~---------~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
...+..|+||.+.||+-+.. ..++++++..+..+|+|+-.+|+..
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 34556799999999884432 2467888888889999999887755
No 431
>PTZ00357 methyltransferase; Provisional
Probab=22.46 E-value=1.9e+02 Score=33.12 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=53.1
Q ss_pred eEEEECCccChHHHHH----hhcCcEEEEeccCCCHHhHHHHHHc---------------CCCceeecccCCCCC-----
Q 037675 267 IGFDIGGGSGTFAARM----AERNVTVITNTLNVDAPYSEFIAAR---------------GLFPLYLSLDHRFPF----- 322 (418)
Q Consensus 267 ~VLDvGCGtG~faa~L----a~~gV~vv~~alD~s~~~l~~a~eR---------------Gli~~~~~~~e~LPf----- 322 (418)
.|+=+|+|-|-+.... .+.|+.+..++++-+++...+.+.+ +.+.++.++...+..
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999765332 2336555445677764322122111 113445555555432
Q ss_pred ------CCCccceEEecCcCcCCCChhHHHHHHHHhhccccC----CcE
Q 037675 323 ------YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRA----GGL 361 (418)
Q Consensus 323 ------~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRP----GG~ 361 (418)
.-+.+|+|++-. |--+.+++--...|.-+.|.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSEL-LGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSEL-LGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhh-hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 224799999843 23334444334677788888887 775
No 432
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=22.31 E-value=6.1e+02 Score=25.00 Aligned_cols=112 Identities=15% Similarity=0.106 Sum_probs=57.4
Q ss_pred EEEECCcc-C-hHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhHH
Q 037675 268 GFDIGGGS-G-TFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKL 345 (418)
Q Consensus 268 VLDvGCGt-G-~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~l 345 (418)
|-=||+|. | .++..|++.|..++ ..|.++...+.+.+.|. .... ..+++.-....-|+|+..- .+....
T Consensus 3 Ig~IGlG~mG~~mA~~L~~~g~~v~--v~dr~~~~~~~~~~~g~-~~~~-s~~~~~~~~~~advVi~~v-----p~~~~~ 73 (299)
T PRK12490 3 LGLIGLGKMGGNMAERLREDGHEVV--GYDVNQEAVDVAGKLGI-TARH-SLEELVSKLEAPRTIWVMV-----PAGEVT 73 (299)
T ss_pred EEEEcccHHHHHHHHHHHhCCCEEE--EEECCHHHHHHHHHCCC-eecC-CHHHHHHhCCCCCEEEEEe-----cCchHH
Confidence 44467765 2 46677777776654 35777766666666664 2111 1111100011247776531 222345
Q ss_pred HHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675 346 EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL 390 (418)
Q Consensus 346 e~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l 390 (418)
+.++.++...++||-.+ |.......+...+ +.+.++..|..-+
T Consensus 74 ~~v~~~i~~~l~~g~iv-id~st~~~~~~~~-~~~~~~~~g~~~v 116 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIV-VDGGNSRYKDDLR-RAEELAERGIHYV 116 (299)
T ss_pred HHHHHHHhccCCCCCEE-EECCCCCchhHHH-HHHHHHHcCCeEE
Confidence 57777887788887644 4432222222222 4445555565444
No 433
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=22.26 E-value=2.8e+02 Score=26.00 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=32.0
Q ss_pred HHHHHhhccccCCcEEEEEecccCch--hH-------HHHHHHHHHHcCcEEEE-EEEcccCCCCccceEEEEEEEcCCC
Q 037675 347 FLMFDFDRILRAGGLFWLDNFYCAND--EK-------KSALTRLIERFGYKKLK-WVVGEKGETGKSEVYLSAVLQKPVR 416 (418)
Q Consensus 347 ~~L~Ei~RVLRPGG~~ii~~~~~~~e--e~-------~~~~~~l~~~~Gfk~l~-W~~~~k~d~~~~e~~l~Ai~qKP~~ 416 (418)
.++.=+.+.|.|||.+++........ ++ ...+-..+...||+-.+ |-..+.-. +.+.++. .+||.+
T Consensus 67 ~l~~~~~~~l~pg~~lfVeY~~D~eT~~~L~~G~pp~~TrLG~~Ll~~GFtwfKdWYfPEG~~-EGg~KlQ---a~Kpl~ 142 (170)
T PF06557_consen 67 ELYKLFSRYLEPGGRLFVEYVEDRETRRQLQRGVPPAETRLGFSLLKAGFTWFKDWYFPEGGM-EGGPKLQ---AEKPLN 142 (170)
T ss_dssp HHHHHHHTT----SEEEEE-TT-HHHHHHHHTT--GGGSHHHHHHHTTT--EEEEEE--TTTS-TT-EEEE---EE--SS
T ss_pred HHHHHHHHHhhhcCeEEEEEecCHHHHHHHHcCCCcccchhHHHHHhCCcEEEeeeeccCccc-cCCceee---eecCCC
Confidence 67778889999999998875422110 11 12366778899999887 87754322 2333322 568876
No 434
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=22.20 E-value=5.6e+02 Score=25.76 Aligned_cols=101 Identities=19% Similarity=0.191 Sum_probs=55.0
Q ss_pred cCCCCCCeEEEECCcc-ChHHHHHhh-cCc-EEEEeccCCCHHhHHHHHHcCCCceeec----ccCCC-CCCCCccceEE
Q 037675 260 LGSGGIRIGFDIGGGS-GTFAARMAE-RNV-TVITNTLNVDAPYSEFIAARGLFPLYLS----LDHRF-PFYDNVFDLVH 331 (418)
Q Consensus 260 l~~g~~r~VLDvGCGt-G~faa~La~-~gV-~vv~~alD~s~~~l~~a~eRGli~~~~~----~~e~L-Pf~d~sFDlV~ 331 (418)
+.+| .+||=.|+|. |..+..+++ .|+ .++ ++|.++...+.+.+-|.. .+.. ..+.+ .+.++.+|+|+
T Consensus 174 ~~~g--~~vlI~g~g~vg~~~~~~a~~~G~~~vi--~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~i~~~~~~~~d~v~ 248 (375)
T cd08282 174 VQPG--DTVAVFGAGPVGLMAAYSAILRGASRVY--VVDHVPERLDLAESIGAI-PIDFSDGDPVEQILGLEPGGVDRAV 248 (375)
T ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHcCCCEEE--EECCCHHHHHHHHHcCCe-EeccCcccHHHHHHHhhCCCCCEEE
Confidence 4455 3666678763 555555555 376 454 267777777777777742 2111 00100 11224688888
Q ss_pred ecCc---CcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 332 ASSG---LDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 332 s~~~---L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
-... +..+.. .+-...+.+..++|+++|.+.+.+
T Consensus 249 d~~g~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 249 DCVGYEARDRGGE-AQPNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred ECCCCcccccccc-cchHHHHHHHHHHhhcCcEEEEEe
Confidence 6321 111100 011246789999999999986544
No 435
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=22.17 E-value=5.7e+02 Score=25.78 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=51.5
Q ss_pred CeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccC-------------------CC-C-
Q 037675 266 RIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDH-------------------RF-P- 321 (418)
Q Consensus 266 r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e-------------------~L-P- 321 (418)
.+||=.|+ +.|..+..+++. |+.++. ++.++...+.+++.|....+....+ .. .
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~G~~vv~--~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAAGANPVA--VVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRF 272 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchH
Confidence 47888886 346566666654 777542 4667777788887774222211000 00 0
Q ss_pred -------CCCC-ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 322 -------FYDN-VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 322 -------f~d~-sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
.... .+|+|+.. ... ..+.+..+.|+++|.++...
T Consensus 273 ~~~v~~l~~~~~g~d~vid~-----~g~-----~~~~~~~~~l~~~G~~v~~g 315 (393)
T cd08246 273 GKAIWDILGGREDPDIVFEH-----PGR-----ATFPTSVFVCDRGGMVVICA 315 (393)
T ss_pred HHHHHHHhCCCCCCeEEEEC-----Cch-----HhHHHHHHHhccCCEEEEEc
Confidence 1122 57888752 111 34567889999999997643
No 436
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=22.10 E-value=81 Score=31.26 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=17.7
Q ss_pred CeEEEECCccChHHHHHhhc
Q 037675 266 RIGFDIGGGSGTFAARMAER 285 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~ 285 (418)
..++|+|||.|.++.++++.
T Consensus 20 ~~~vEfGaGrg~LS~~v~~~ 39 (259)
T PF05206_consen 20 SCFVEFGAGRGELSRWVAQA 39 (259)
T ss_pred CEEEEECCCchHHHHHHHHH
Confidence 48999999999999888764
No 437
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=22.05 E-value=2.8e+02 Score=29.55 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=50.3
Q ss_pred CeEEEECCcc-ChH-HHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChh
Q 037675 266 RIGFDIGGGS-GTF-AARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPE 343 (418)
Q Consensus 266 r~VLDvGCGt-G~f-aa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~ 343 (418)
++|+=+|+|. |.. +..++..|..|+. .|.++.....+...|. ... ...+.+ ...|+|+... ..+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV--~d~dp~ra~~A~~~G~-~v~-~l~eal----~~aDVVI~aT-----G~~- 278 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIV--TEVDPICALQAAMDGF-RVM-TMEEAA----ELGDIFVTAT-----GNK- 278 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEE--EcCCchhhHHHHhcCC-Eec-CHHHHH----hCCCEEEECC-----CCH-
Confidence 4899999986 433 3444456877653 5666544444545454 211 111111 2589998742 111
Q ss_pred HHHHHHH-HhhccccCCcEEEEEeccc
Q 037675 344 KLEFLMF-DFDRILRAGGLFWLDNFYC 369 (418)
Q Consensus 344 ~le~~L~-Ei~RVLRPGG~~ii~~~~~ 369 (418)
.++. +..+.+|+|++++....+.
T Consensus 279 ---~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 279 ---DVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred ---HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 3443 7889999999887665543
No 438
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=22.02 E-value=4.9e+02 Score=28.06 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=59.1
Q ss_pred eEEEECCccCh--HHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCCCceeecc---------cCCCCCCC------Ccc
Q 037675 267 IGFDIGGGSGT--FAARMAER--NVTVITNTLNVDAPYSEFIAARGLFPLYLSL---------DHRFPFYD------NVF 327 (418)
Q Consensus 267 ~VLDvGCGtG~--faa~La~~--gV~vv~~alD~s~~~l~~a~eRGli~~~~~~---------~e~LPf~d------~sF 327 (418)
+|.=+|.|..+ +|+.|++. ++.|++ +|.++.-++...+.+. ++.... ..++-|-. ..-
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~g--vD~~~~~v~~l~~g~~-~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a 79 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVV--VDISVPRIDAWNSDQL-PIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA 79 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEE--EECCHHHHHHHHcCCC-ccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence 56778999864 56778887 466754 6888877776554432 222110 01121111 234
Q ss_pred ceEEe-cCcCc--------CCCChhHHHHHHHHhhccccCCcEEEEEecccCc
Q 037675 328 DLVHA-SSGLD--------VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN 371 (418)
Q Consensus 328 DlV~s-~~~L~--------~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ 371 (418)
|+++. ..+-. .-.+...++.+..+|.+.|++|-.+++......+
T Consensus 80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G 132 (473)
T PLN02353 80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK 132 (473)
T ss_pred CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence 66643 22211 1224446789999999999998877776654443
No 439
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=22.02 E-value=2.9e+02 Score=27.35 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=50.8
Q ss_pred CCeEEEECCcc--ChHHHHHhhcCcEEEEeccCCCHHhHHH-----------HHHcCCCcee--ecccCCCCC-----CC
Q 037675 265 IRIGFDIGGGS--GTFAARMAERNVTVITNTLNVDAPYSEF-----------IAARGLFPLY--LSLDHRFPF-----YD 324 (418)
Q Consensus 265 ~r~VLDvGCGt--G~faa~La~~gV~vv~~alD~s~~~l~~-----------a~eRGli~~~--~~~~e~LPf-----~d 324 (418)
+++|-=||+|+ +.+|..++..|..|+. .|.+++.++. ..++|....- .....++-+ .-
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l--~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLV--FETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEE--EECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 45788889996 3577778888877653 5777766654 3334432110 000011110 01
Q ss_pred CccceEEecCcCcCCCChhHHHHHHHHhhccc-cCCcEEE
Q 037675 325 NVFDLVHASSGLDVGGQPEKLEFLMFDFDRIL-RAGGLFW 363 (418)
Q Consensus 325 ~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVL-RPGG~~i 363 (418)
...|+|+-+ +.. +.+-...++.++.+++ +||..++
T Consensus 83 ~~~d~ViEa-v~E---~~~~K~~l~~~l~~~~~~~~~il~ 118 (286)
T PRK07819 83 ADRQLVIEA-VVE---DEAVKTEIFAELDKVVTDPDAVLA 118 (286)
T ss_pred CCCCEEEEe-ccc---CHHHHHHHHHHHHHhhCCCCcEEE
Confidence 346777753 122 2233346778888888 7776553
No 440
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=21.63 E-value=3.1e+02 Score=27.57 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=45.6
Q ss_pred CeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHH-HHcCCCceeecccC--CCCCCCCccceEEecCcCcCCC
Q 037675 266 RIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFI-AARGLFPLYLSLDH--RFPFYDNVFDLVHASSGLDVGG 340 (418)
Q Consensus 266 r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a-~eRGli~~~~~~~e--~LPf~d~sFDlV~s~~~L~~~~ 340 (418)
.+||=+|+|. |.++..+++. |+.++. ++.++...+.+ .+-|. .......+ .+.-..+.+|+|+-.. .
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G~~vi~--~~~~~~~~~~~~~~~Ga-~~~i~~~~~~~~~~~~~~~D~vid~~-----g 253 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMGHHVTV--ISSSDKKREEALEHLGA-DDYLVSSDAAEMQEAADSLDYIIDTV-----P 253 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCeEEE--EeCCHHHHHHHHHhcCC-cEEecCCChHHHHHhcCCCcEEEECC-----C
Confidence 3677667643 5566666654 766542 34444444433 34554 22221111 1100012478777421 1
Q ss_pred ChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 341 QPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
.. ..+.+..+.||+||.++...
T Consensus 254 ~~----~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 254 VF----HPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred ch----HHHHHHHHHhccCCEEEEEC
Confidence 11 35667788999999987654
No 441
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=21.54 E-value=2.9e+02 Score=29.21 Aligned_cols=87 Identities=16% Similarity=0.149 Sum_probs=50.0
Q ss_pred CeEEEECCcc-ChHHH-HHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChh
Q 037675 266 RIGFDIGGGS-GTFAA-RMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPE 343 (418)
Q Consensus 266 r~VLDvGCGt-G~faa-~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~ 343 (418)
++|+=+|+|. |...+ .++..|..++. +|.++.....+...|. ... ...+.+ ...|+|++.. ..+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV--~d~dp~r~~~A~~~G~-~v~-~leeal----~~aDVVItaT-----G~~- 261 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIV--TEVDPIRALEAAMDGF-RVM-TMEEAA----KIGDIFITAT-----GNK- 261 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEE--EeCChhhHHHHHhcCC-EeC-CHHHHH----hcCCEEEECC-----CCH-
Confidence 4899999997 54444 34445777653 4555544445555564 111 111111 2469987632 111
Q ss_pred HHHHHHH-HhhccccCCcEEEEEeccc
Q 037675 344 KLEFLMF-DFDRILRAGGLFWLDNFYC 369 (418)
Q Consensus 344 ~le~~L~-Ei~RVLRPGG~~ii~~~~~ 369 (418)
.++. +....+|||++++...-+.
T Consensus 262 ---~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 262 ---DVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred ---HHHHHHHHhcCCCCcEEEEECCCC
Confidence 3443 5888999999987766553
No 442
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=21.52 E-value=4.4e+02 Score=27.56 Aligned_cols=111 Identities=19% Similarity=0.223 Sum_probs=54.7
Q ss_pred CCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeec-ccCCCCCCCCccceEEecCcCcCCCChhHHHHHHH
Q 037675 272 GGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLS-LDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMF 350 (418)
Q Consensus 272 GCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~-~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~ 350 (418)
|.|...+|..|+++|..|.+...+...+..+...+.|+ ..+.+ ....+ ...+|+|+.+-.+..- .+. +..+..
T Consensus 9 G~gm~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi-~~~~~~~~~~~---~~~~d~vV~SpgI~~~-~~~-~~~a~~ 82 (448)
T TIGR01081 9 GTFMGGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGI-EIIEGFDAAQL---EPKPDLVVIGNAMKRG-NPC-VEAVLN 82 (448)
T ss_pred HHhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCC-EEeCCCCHHHC---CCCCCEEEECCCCCCC-CHH-HHHHHH
Confidence 45556788899999988765332222333333344565 44332 11111 1348999988766532 221 222210
Q ss_pred ---------H-hhccccCCc-EEEEEecccCchhHHHHHHHHHHHcCcEE
Q 037675 351 ---------D-FDRILRAGG-LFWLDNFYCANDEKKSALTRLIERFGYKK 389 (418)
Q Consensus 351 ---------E-i~RVLRPGG-~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~ 389 (418)
| +.+.+.++- .+.|++...+ ....+.+..+++..|++.
T Consensus 83 ~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GK-TTTt~li~~iL~~~g~~~ 131 (448)
T TIGR01081 83 LNLPYTSGPQWLHDFVLHDRWVLAVAGTHGK-TTTASMLAWVLEQCGLKP 131 (448)
T ss_pred CCCCEEeHHHHHHHHHhcCCCEEEEECCCcH-HHHHHHHHHHHHhcCCCC
Confidence 1 123322333 3444444332 233445777888877653
No 443
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=21.32 E-value=5.3e+02 Score=25.25 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=50.5
Q ss_pred CCeEEEECCcc-C-hHHHHHhhcCcEEEEeccCCCHHhHHHH-----------HHcCCCce-----------eecccCCC
Q 037675 265 IRIGFDIGGGS-G-TFAARMAERNVTVITNTLNVDAPYSEFI-----------AARGLFPL-----------YLSLDHRF 320 (418)
Q Consensus 265 ~r~VLDvGCGt-G-~faa~La~~gV~vv~~alD~s~~~l~~a-----------~eRGli~~-----------~~~~~e~L 320 (418)
+++|-=||+|. | .++..|+..|..++ ..|.++..++.+ .++|.+.. .....+.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~- 80 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVW--LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE- 80 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH-
Confidence 45677789985 3 57777888887664 368887665532 22332110 0111111
Q ss_pred CCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEE
Q 037675 321 PFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFW 363 (418)
Q Consensus 321 Pf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~i 363 (418)
-..-|+|+-.- ..+++....++.++...++|+..++
T Consensus 81 ---~~~aD~Vieav----~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 81 ---LRDADFIIEAI----VESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred ---hCCCCEEEEcC----ccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 12357777531 2233444577888898899988654
No 444
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.13 E-value=3.5e+02 Score=23.01 Aligned_cols=34 Identities=6% Similarity=0.046 Sum_probs=21.7
Q ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhccc
Q 037675 62 NISLISEHVSLILKEIDSSQKKLAKMEKELLGYQ 95 (418)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (418)
+...+.+++.+...+++..+.+-++++.++..++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666777777777766666666666655444
No 445
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=20.78 E-value=6.9e+02 Score=23.28 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=47.2
Q ss_pred CeEEEECC--ccChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC--CCCCCccceEEecCcCcCCC
Q 037675 266 RIGFDIGG--GSGTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF--PFYDNVFDLVHASSGLDVGG 340 (418)
Q Consensus 266 r~VLDvGC--GtG~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L--Pf~d~sFDlV~s~~~L~~~~ 340 (418)
.+||=.|+ +.|..+..+++ .|+.++.+ +.+. ..+.+.+.|....+......+ -...+.+|+++... .
T Consensus 146 ~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~--~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~-----~ 217 (309)
T cd05289 146 QTVLIHGAAGGVGSFAVQLAKARGARVIAT--ASAA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTV-----G 217 (309)
T ss_pred CEEEEecCCchHHHHHHHHHHHcCCEEEEE--ecch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEECC-----c
Confidence 47777776 34545455554 47776532 2233 556666656422222111111 12345688887521 1
Q ss_pred ChhHHHHHHHHhhccccCCcEEEEE
Q 037675 341 QPEKLEFLMFDFDRILRAGGLFWLD 365 (418)
Q Consensus 341 ~~~~le~~L~Ei~RVLRPGG~~ii~ 365 (418)
. ..+.+..+.|+++|.++..
T Consensus 218 --~---~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 218 --G---ETLARSLALVKPGGRLVSI 237 (309)
T ss_pred --h---HHHHHHHHHHhcCcEEEEE
Confidence 1 2456788899999998754
No 446
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=20.70 E-value=7.3e+02 Score=23.52 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=49.5
Q ss_pred cCCCCCCeEEEECCc-cChHHHHHhhc-CcE-EEEeccCCCHHhHHHHHHcCCCceeecccCCC------CCCCCccceE
Q 037675 260 LGSGGIRIGFDIGGG-SGTFAARMAER-NVT-VITNTLNVDAPYSEFIAARGLFPLYLSLDHRF------PFYDNVFDLV 330 (418)
Q Consensus 260 l~~g~~r~VLDvGCG-tG~faa~La~~-gV~-vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L------Pf~d~sFDlV 330 (418)
+.+| .+||=.|+| .|..++.+++. |+. ++. ....+...+.+.+-|....+......+ -.+...+|++
T Consensus 127 ~~~~--~~vlI~g~g~vg~~~~~la~~~g~~~v~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~v 202 (312)
T cd08269 127 IRAG--KTVAVIGAGFIGLLFLQLAAAAGARRVIA--IDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVV 202 (312)
T ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHcCCcEEEE--ECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEE
Confidence 4444 356555643 34455555554 776 542 344455555555556522222111111 0123468988
Q ss_pred EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675 331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN 366 (418)
Q Consensus 331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~ 366 (418)
+..... . ..+.++.+.|+++|.++..+
T Consensus 203 ld~~g~------~---~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 203 IEAVGH------Q---WPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred EECCCC------H---HHHHHHHHHhccCCEEEEEc
Confidence 853211 1 45678899999999987543
No 447
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=20.59 E-value=37 Score=28.98 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=11.0
Q ss_pred EEEECCccChHH-HHHh
Q 037675 268 GFDIGGGSGTFA-ARMA 283 (418)
Q Consensus 268 VLDvGCGtG~fa-a~La 283 (418)
-+|||||.|... +.+.
T Consensus 6 NIDIGcG~GNTmda~fR 22 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFR 22 (124)
T ss_pred ccccccCCCcchhhhhh
Confidence 479999999643 4443
No 448
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.32 E-value=3e+02 Score=24.48 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=51.6
Q ss_pred eEEEECCccC-hHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccC--CCCCCCCccceEEecCcCcCCCChh
Q 037675 267 IGFDIGGGSG-TFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDH--RFPFYDNVFDLVHASSGLDVGGQPE 343 (418)
Q Consensus 267 ~VLDvGCGtG-~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e--~LPf~d~sFDlV~s~~~L~~~~~~~ 343 (418)
+|.+||-|.= ..|.+|+++|+.++ +.|+.+. .+. .|+ .++.++.. ++..+ ..-|+|++.+ ++.
T Consensus 16 kVvEVGiG~~~~VA~~L~e~g~dv~--atDI~~~---~a~-~g~-~~v~DDitnP~~~iY-~~A~lIYSiR------ppp 81 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAERGFDVL--ATDINEK---TAP-EGL-RFVVDDITNPNISIY-EGADLIYSIR------PPP 81 (129)
T ss_pred cEEEEccchHHHHHHHHHHcCCcEE--EEecccc---cCc-ccc-eEEEccCCCccHHHh-hCccceeecC------CCH
Confidence 7999999874 46789999998775 4677654 222 455 56665432 22222 2368888744 334
Q ss_pred HHHHHHHHhhccccCCcE
Q 037675 344 KLEFLMFDFDRILRAGGL 361 (418)
Q Consensus 344 ~le~~L~Ei~RVLRPGG~ 361 (418)
.+..++.++.+.++-.-+
T Consensus 82 El~~~ildva~aVga~l~ 99 (129)
T COG1255 82 ELQSAILDVAKAVGAPLY 99 (129)
T ss_pred HHHHHHHHHHHhhCCCEE
Confidence 566788888887765443
No 449
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=20.08 E-value=4.8e+02 Score=25.28 Aligned_cols=88 Identities=19% Similarity=0.151 Sum_probs=48.6
Q ss_pred eEEEECCccC--hHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeec--c-------cCCCCCCCCccceEEecCc
Q 037675 267 IGFDIGGGSG--TFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLS--L-------DHRFPFYDNVFDLVHASSG 335 (418)
Q Consensus 267 ~VLDvGCGtG--~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~--~-------~e~LPf~d~sFDlV~s~~~ 335 (418)
+|+=+|+|.- .+|..|++.|..|.. ++. ++.++.+.+.|+ ..... . .....-....+|+|+..-=
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~--~~r-~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTF--LVR-PKRAKALRERGL-VIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEE--Eec-HHHHHHHHhCCe-EEEeCCCeEEecceeecCHHHccCCCCEEEEEec
Confidence 5677888873 367778877755432 344 555666666664 21111 0 0011011256887775311
Q ss_pred CcCCCChhHHHHHHHHhhccccCCcEEEE
Q 037675 336 LDVGGQPEKLEFLMFDFDRILRAGGLFWL 364 (418)
Q Consensus 336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii 364 (418)
...++.++.++...++++..++.
T Consensus 78 ------~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 78 ------AYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred ------ccCHHHHHHHHHhhcCCCCEEEE
Confidence 11345788888888888775543
No 450
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=20.02 E-value=1.9e+02 Score=29.62 Aligned_cols=40 Identities=18% Similarity=0.127 Sum_probs=32.3
Q ss_pred CeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHc
Q 037675 266 RIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAAR 307 (418)
Q Consensus 266 r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eR 307 (418)
...+|.=-|.|+.+.++.++. -.. +++|-++..++.|+++
T Consensus 25 giyiD~TlG~GGHS~~iL~~l~~~~~l--i~~DrD~~Ai~~a~~~ 67 (314)
T COG0275 25 GIYIDGTLGAGGHSRAILEKLPDLGRL--IGIDRDPQAIAIAKER 67 (314)
T ss_pred cEEEEecCCCcHhHHHHHHhCCCCCeE--EEEcCCHHHHHHHHHH
Confidence 589999999999999998873 223 3579999989888875
Done!