BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037676
         (267 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
           Basis For Creb Faimly Selective Dimerization And Dna
           Binding
 pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
           Basis For Creb Faimly Selective Dimerization And Dna
           Binding
          Length = 55

 Score = 30.8 bits (68), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 201 RRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKEL 248
           +R+ R++KNRE+A  SR +K+ Y   LE  +  L+ +N  L E +K L
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKAL 48


>pdb|2WWU|A Chain A, Crystal Structure Of The Catalytic Domain Of Phd Finger
          Protein 8
          Length = 371

 Score = 28.5 bits (62), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 7/30 (23%)

Query: 2  GNKLVVETAEQAATLTRQNSFSIPILLCKK 31
          GN+L VE  E+       NSFS+PIL+ KK
Sbjct: 32 GNQLTVEFLEE-------NSFSVPILVLKK 54


>pdb|4DO0|A Chain A, Crystal Structure Of Human Phf8 In Complex With
          Daminozide
          Length = 374

 Score = 28.5 bits (62), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 7/30 (23%)

Query: 2  GNKLVVETAEQAATLTRQNSFSIPILLCKK 31
          GN+L VE  E+       NSFS+PIL+ KK
Sbjct: 35 GNQLTVEFLEE-------NSFSVPILVLKK 57


>pdb|3K3N|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
          Phf8
 pdb|3K3O|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
          Phf8 Complexed With Alpha-Ketoglutarate
          Length = 371

 Score = 28.5 bits (62), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 7/30 (23%)

Query: 2  GNKLVVETAEQAATLTRQNSFSIPILLCKK 31
          GN+L VE  E+       NSFS+PIL+ KK
Sbjct: 24 GNQLTVEFLEE-------NSFSVPILVLKK 46


>pdb|2COE|A Chain A, Solution Structure Of Brct Domain Of Terminal
           Deoxynucleotidyltransferase
          Length = 120

 Score = 28.5 bits (62), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 195 HEVVVERRQRRMIKNRESAARSRARKQAYTVELELE--LTQLKAENDKLKEAVKELERKR 252
            ++VV   +++M   R +     AR++ + VE EL   +T + AEN+   + ++ L+ ++
Sbjct: 22  QDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQK 81

Query: 253 VQ 254
           VQ
Sbjct: 82  VQ 83


>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
          Length = 447

 Score = 28.5 bits (62), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 7/30 (23%)

Query: 2   GNKLVVETAEQAATLTRQNSFSIPILLCKK 31
           GN+L VE  E+       NSFS+PIL+ KK
Sbjct: 108 GNQLTVEFLEE-------NSFSVPILVLKK 130


>pdb|2WTY|A Chain A, Crystal Structure Of The Homodimeric Mafb In Complex With
           The T-Mare Binding Site
 pdb|2WTY|B Chain B, Crystal Structure Of The Homodimeric Mafb In Complex With
           The T-Mare Binding Site
          Length = 97

 Score = 28.1 bits (61), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 196 EVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKR 252
           EV+  +++RR +KNR  A   R ++      LE E TQL  + ++LK+ V  L R+R
Sbjct: 26  EVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARER 82


>pdb|2WT7|B Chain B, Crystal Structure Of The Bzip Heterodimeric Complex
           Mafb:cfos Bound To Dna
          Length = 90

 Score = 27.3 bits (59), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 196 EVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKR 252
           EV+  +++RR +KNR  A   R ++      LE E TQL  + ++LK+ V  L R+R
Sbjct: 22  EVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARER 78


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.129    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,270,617
Number of Sequences: 62578
Number of extensions: 275601
Number of successful extensions: 561
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 41
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)