Query 037676
Match_columns 267
No_of_seqs 188 out of 733
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 03:18:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3584 cAMP response element 99.4 5.2E-13 1.1E-17 124.8 7.0 61 194-254 284-344 (348)
2 smart00338 BRLZ basic region l 99.3 1.2E-11 2.6E-16 91.0 8.5 55 198-252 2-56 (65)
3 PF00170 bZIP_1: bZIP transcri 99.2 5.5E-11 1.2E-15 87.4 9.2 58 198-255 2-59 (64)
4 KOG4343 bZIP transcription fac 99.2 6.9E-11 1.5E-15 117.7 8.8 58 194-251 274-331 (655)
5 PF07716 bZIP_2: Basic region 99.2 2.2E-10 4.9E-15 81.9 8.4 52 198-250 2-53 (54)
6 KOG0709 CREB/ATF family transc 99.0 2.1E-10 4.7E-15 112.6 6.1 65 196-261 246-310 (472)
7 KOG4005 Transcription factor X 98.7 7.1E-08 1.5E-12 88.8 9.7 56 198-253 66-121 (292)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.0 4.1E-07 8.9E-12 71.6 -2.5 54 195-248 24-77 (92)
9 KOG0837 Transcriptional activa 98.0 3.6E-05 7.8E-10 71.7 9.4 79 185-263 188-271 (279)
10 KOG3119 Basic region leucine z 97.4 0.0008 1.7E-08 62.5 8.3 64 188-251 181-244 (269)
11 KOG4196 bZIP transcription fac 97.3 0.0021 4.6E-08 54.6 9.4 60 195-254 47-113 (135)
12 KOG4571 Activating transcripti 97.3 0.0021 4.6E-08 60.8 9.9 57 204-260 230-289 (294)
13 KOG3863 bZIP transcription fac 96.0 0.0083 1.8E-07 61.7 4.7 50 200-249 489-538 (604)
14 PHA03155 hypothetical protein; 89.9 0.58 1.3E-05 39.2 4.7 38 223-260 9-54 (115)
15 KOG1414 Transcriptional activa 89.3 0.016 3.5E-07 56.5 -5.7 56 196-251 149-208 (395)
16 PF05812 Herpes_BLRF2: Herpesv 86.2 1.3 2.7E-05 37.3 4.5 28 220-247 1-28 (118)
17 KOG1414 Transcriptional activa 85.9 0.15 3.3E-06 49.7 -1.3 59 196-254 280-339 (395)
18 PHA03162 hypothetical protein; 85.6 0.57 1.2E-05 40.2 2.2 41 219-259 10-62 (135)
19 PF01166 TSC22: TSC-22/dip/bun 81.4 2.6 5.7E-05 31.5 4.0 23 222-244 21-43 (59)
20 PRK00888 ftsB cell division pr 81.0 4.8 0.0001 32.7 5.7 34 217-250 29-62 (105)
21 PF04977 DivIC: Septum formati 78.8 6.9 0.00015 28.7 5.6 31 218-248 20-50 (80)
22 PRK10884 SH3 domain-containing 78.5 26 0.00056 31.8 10.2 39 214-252 117-155 (206)
23 TIGR02449 conserved hypothetic 78.4 9.3 0.0002 29.0 6.1 37 224-261 9-45 (65)
24 PRK13169 DNA replication intia 75.3 5.5 0.00012 33.0 4.6 29 220-248 27-55 (110)
25 PF06156 DUF972: Protein of un 73.4 6.7 0.00015 32.2 4.6 30 221-250 28-57 (107)
26 KOG0709 CREB/ATF family transc 72.4 13 0.00028 37.8 7.2 62 192-253 246-317 (472)
27 PF12709 Kinetocho_Slk19: Cent 71.4 20 0.00044 28.8 6.7 37 222-259 49-85 (87)
28 PF03980 Nnf1: Nnf1 ; InterPr 71.2 8.5 0.00018 30.7 4.7 31 219-249 77-107 (109)
29 PF08172 CASP_C: CASP C termin 69.4 19 0.0004 33.6 7.1 53 195-248 81-133 (248)
30 TIGR02209 ftsL_broad cell divi 68.1 22 0.00048 26.7 6.2 32 219-250 28-59 (85)
31 TIGR02894 DNA_bind_RsfA transc 67.5 30 0.00065 30.7 7.6 39 217-255 106-144 (161)
32 PRK05759 F0F1 ATP synthase sub 66.9 73 0.0016 26.4 10.4 65 194-258 28-92 (156)
33 KOG4571 Activating transcripti 66.5 67 0.0015 31.0 10.3 67 194-260 224-293 (294)
34 KOG4797 Transcriptional regula 66.2 8.4 0.00018 32.4 3.7 24 220-243 72-95 (123)
35 PRK14474 F0F1 ATP synthase sub 66.0 72 0.0016 29.4 10.2 64 194-257 29-92 (250)
36 PRK13454 F0F1 ATP synthase sub 66.0 87 0.0019 27.3 10.3 52 194-245 55-106 (181)
37 KOG4343 bZIP transcription fac 65.7 18 0.00039 37.8 6.7 61 191-251 275-338 (655)
38 PF06005 DUF904: Protein of un 65.7 24 0.00051 27.1 5.9 23 226-248 29-51 (72)
39 PF02183 HALZ: Homeobox associ 65.0 21 0.00046 25.1 5.0 27 225-251 15-41 (45)
40 PF05377 FlaC_arch: Flagella a 64.3 25 0.00053 26.0 5.5 37 226-262 11-49 (55)
41 KOG1318 Helix loop helix trans 63.6 29 0.00062 34.9 7.5 57 197-253 238-321 (411)
42 KOG4005 Transcription factor X 63.3 61 0.0013 30.9 9.1 67 185-251 56-126 (292)
43 PF07407 Seadorna_VP6: Seadorn 63.0 15 0.00033 36.3 5.3 28 226-253 36-63 (420)
44 PF12808 Mto2_bdg: Micro-tubul 62.3 19 0.00041 26.3 4.5 25 225-249 25-49 (52)
45 PF07558 Shugoshin_N: Shugoshi 61.5 10 0.00022 26.6 2.9 43 203-246 3-45 (46)
46 PF13851 GAS: Growth-arrest sp 61.1 84 0.0018 28.1 9.5 51 201-251 72-122 (201)
47 PF11559 ADIP: Afadin- and alp 61.0 75 0.0016 26.5 8.7 50 201-250 45-94 (151)
48 PF12709 Kinetocho_Slk19: Cent 59.6 43 0.00092 26.9 6.5 40 219-258 39-78 (87)
49 PF06156 DUF972: Protein of un 59.5 27 0.00059 28.6 5.6 33 222-254 22-54 (107)
50 PRK14472 F0F1 ATP synthase sub 59.3 1.2E+02 0.0025 26.1 10.2 54 193-246 41-94 (175)
51 PF12999 PRKCSH-like: Glucosid 59.0 67 0.0014 28.8 8.3 38 213-250 137-174 (176)
52 PRK13461 F0F1 ATP synthase sub 58.7 1.1E+02 0.0024 25.7 10.4 62 194-255 29-90 (159)
53 PRK14471 F0F1 ATP synthase sub 58.7 1.1E+02 0.0024 25.8 10.4 53 193-245 31-83 (164)
54 PRK07352 F0F1 ATP synthase sub 58.5 1.2E+02 0.0026 26.0 10.2 60 195-254 44-103 (174)
55 PF05377 FlaC_arch: Flagella a 58.3 43 0.00093 24.8 5.8 28 224-251 2-29 (55)
56 PRK09174 F0F1 ATP synthase sub 58.2 1.3E+02 0.0029 27.0 10.2 48 194-241 77-124 (204)
57 PF06005 DUF904: Protein of un 58.1 45 0.00097 25.6 6.2 12 232-243 42-53 (72)
58 CHL00118 atpG ATP synthase CF0 58.0 1.2E+02 0.0025 25.7 10.4 50 194-243 46-95 (156)
59 cd07429 Cby_like Chibby, a nuc 57.5 24 0.00051 29.3 4.9 26 230-255 80-105 (108)
60 PRK14127 cell division protein 57.4 31 0.00066 28.6 5.5 28 224-251 39-66 (109)
61 KOG3119 Basic region leucine z 56.9 98 0.0021 29.0 9.5 61 191-251 188-251 (269)
62 PRK10803 tol-pal system protei 56.3 89 0.0019 29.0 9.1 35 221-255 60-94 (263)
63 PF01486 K-box: K-box region; 56.0 62 0.0014 25.4 7.0 33 214-246 63-99 (100)
64 CHL00019 atpF ATP synthase CF0 55.5 1.4E+02 0.003 25.9 10.4 62 194-255 48-109 (184)
65 PF13863 DUF4200: Domain of un 55.3 1.1E+02 0.0023 24.5 8.5 58 202-261 61-118 (126)
66 PRK13453 F0F1 ATP synthase sub 55.2 1.4E+02 0.003 25.8 10.2 54 194-247 42-95 (173)
67 PRK14473 F0F1 ATP synthase sub 55.2 1.3E+02 0.0028 25.4 10.2 54 194-247 32-85 (164)
68 PF04568 IATP: Mitochondrial A 55.1 81 0.0018 25.8 7.6 18 234-251 81-98 (100)
69 PRK00888 ftsB cell division pr 54.6 32 0.00069 27.9 5.2 19 225-243 44-62 (105)
70 PF04340 DUF484: Protein of un 54.3 35 0.00076 30.4 5.9 13 236-248 71-83 (225)
71 PF09726 Macoilin: Transmembra 54.0 88 0.0019 33.4 9.6 25 225-249 541-565 (697)
72 PF08563 P53_TAD: P53 transact 53.5 9.1 0.0002 24.2 1.4 20 21-40 3-22 (25)
73 PF14645 Chibby: Chibby family 52.5 49 0.0011 27.5 6.0 33 227-259 76-108 (116)
74 PRK13169 DNA replication intia 52.1 41 0.00089 27.9 5.5 33 222-254 22-54 (110)
75 PRK08475 F0F1 ATP synthase sub 52.1 1.6E+02 0.0034 25.4 10.2 51 194-244 46-96 (167)
76 PF08232 Striatin: Striatin fa 52.1 1.2E+02 0.0025 25.6 8.4 54 205-258 15-68 (134)
77 smart00340 HALZ homeobox assoc 51.9 33 0.00071 24.3 4.1 23 228-250 11-33 (44)
78 PRK13428 F0F1 ATP synthase sub 50.1 1.5E+02 0.0033 29.6 10.2 53 194-246 25-77 (445)
79 PRK13922 rod shape-determining 50.1 78 0.0017 28.9 7.6 33 216-248 63-95 (276)
80 PRK14127 cell division protein 50.1 38 0.00083 28.1 5.0 28 223-250 31-58 (109)
81 PF06698 DUF1192: Protein of u 49.9 47 0.001 24.8 5.0 25 224-248 23-47 (59)
82 PF06311 NumbF: NUMB domain; 49.5 5 0.00011 32.2 -0.2 23 10-32 9-31 (88)
83 PRK04325 hypothetical protein; 49.4 87 0.0019 23.9 6.6 17 223-239 10-26 (74)
84 PRK06231 F0F1 ATP synthase sub 49.0 2E+02 0.0043 25.8 10.0 53 194-246 72-124 (205)
85 PF04999 FtsL: Cell division p 48.9 66 0.0014 24.9 6.0 27 224-250 44-70 (97)
86 PF05103 DivIVA: DivIVA protei 48.3 20 0.00044 28.7 3.1 28 222-249 25-52 (131)
87 KOG1029 Endocytic adaptor prot 48.3 1E+02 0.0022 33.9 9.0 17 235-251 436-452 (1118)
88 TIGR01069 mutS2 MutS2 family p 48.3 1.1E+02 0.0023 33.0 9.2 13 62-74 340-352 (771)
89 PF14197 Cep57_CLD_2: Centroso 48.1 65 0.0014 24.5 5.6 37 203-246 28-64 (69)
90 PF05300 DUF737: Protein of un 47.8 1.2E+02 0.0025 27.5 8.1 48 206-253 118-165 (187)
91 PF00170 bZIP_1: bZIP transcri 47.6 1E+02 0.0023 22.2 8.9 55 197-251 5-62 (64)
92 PF05529 Bap31: B-cell recepto 47.3 1.1E+02 0.0024 26.6 7.8 23 226-248 165-187 (192)
93 PRK13460 F0F1 ATP synthase sub 47.0 1.9E+02 0.004 24.9 10.2 50 194-243 40-89 (173)
94 PF07047 OPA3: Optic atrophy 3 46.8 42 0.00091 28.2 4.9 36 201-242 97-132 (134)
95 PRK00736 hypothetical protein; 46.6 1.1E+02 0.0023 23.1 6.5 15 222-236 5-19 (68)
96 KOG2829 E2F-like protein [Tran 46.6 45 0.00099 32.4 5.6 33 195-235 134-166 (326)
97 PF02403 Seryl_tRNA_N: Seryl-t 46.5 45 0.00098 26.2 4.8 33 223-255 68-100 (108)
98 TIGR03321 alt_F1F0_F0_B altern 45.8 2.4E+02 0.0051 25.7 10.2 49 195-243 30-78 (246)
99 PF14077 WD40_alt: Alternative 45.7 18 0.00038 26.1 2.1 21 223-243 19-39 (48)
100 smart00243 GAS2 Growth-Arrest- 45.2 10 0.00022 29.6 0.8 12 62-73 55-66 (73)
101 PF10473 CENP-F_leu_zip: Leuci 44.6 2.1E+02 0.0044 24.7 8.8 51 199-249 29-79 (140)
102 PF04977 DivIC: Septum formati 44.2 68 0.0015 23.3 5.2 21 221-241 30-50 (80)
103 COG2433 Uncharacterized conser 44.2 45 0.00098 35.3 5.5 24 225-248 425-448 (652)
104 PF06785 UPF0242: Uncharacteri 44.2 48 0.001 32.9 5.4 39 217-255 122-160 (401)
105 PF07334 IFP_35_N: Interferon- 44.1 38 0.00082 26.6 3.9 17 232-248 3-19 (76)
106 PLN02320 seryl-tRNA synthetase 44.0 95 0.0021 32.0 7.7 51 207-257 115-165 (502)
107 PF06210 DUF1003: Protein of u 43.9 1.6E+02 0.0034 24.2 7.7 42 205-246 54-97 (108)
108 KOG3335 Predicted coiled-coil 42.7 80 0.0017 28.5 6.2 31 219-249 103-133 (181)
109 PF07926 TPR_MLP1_2: TPR/MLP1/ 42.1 1.8E+02 0.0039 24.1 7.9 19 230-248 99-117 (132)
110 COG1382 GimC Prefoldin, chaper 42.0 85 0.0018 26.5 5.9 28 224-251 79-106 (119)
111 PRK14475 F0F1 ATP synthase sub 41.9 2.2E+02 0.0048 24.3 10.0 53 193-245 33-85 (167)
112 PF05266 DUF724: Protein of un 41.8 1.6E+02 0.0035 26.3 8.1 23 210-232 98-120 (190)
113 PF01920 Prefoldin_2: Prefoldi 41.6 1E+02 0.0022 23.5 6.0 27 223-249 63-89 (106)
114 PF11221 Med21: Subunit 21 of 41.5 87 0.0019 26.4 6.1 31 230-261 105-135 (144)
115 TIGR03752 conj_TIGR03752 integ 41.5 48 0.001 33.9 5.2 9 233-241 84-92 (472)
116 TIGR00993 3a0901s04IAP86 chlor 41.4 59 0.0013 35.1 6.0 27 210-236 419-445 (763)
117 PRK10963 hypothetical protein; 41.3 69 0.0015 28.9 5.7 25 225-249 54-81 (223)
118 KOG0288 WD40 repeat protein Ti 41.0 2.1E+02 0.0045 29.3 9.3 27 221-247 47-73 (459)
119 KOG4797 Transcriptional regula 40.9 71 0.0015 27.0 5.2 40 222-261 67-106 (123)
120 TIGR00414 serS seryl-tRNA synt 40.9 1.5E+02 0.0032 29.4 8.4 34 224-257 71-104 (418)
121 COG4467 Regulator of replicati 40.4 29 0.00063 29.1 2.9 27 221-247 28-54 (114)
122 PRK05431 seryl-tRNA synthetase 40.2 1E+02 0.0022 30.6 7.2 33 224-256 68-100 (425)
123 PF03670 UPF0184: Uncharacteri 40.1 1.2E+02 0.0027 24.1 6.2 40 222-261 33-72 (83)
124 KOG2412 Nuclear-export-signal 40.1 2.2E+02 0.0049 30.0 9.7 19 204-222 217-235 (591)
125 PF08781 DP: Transcription fac 40.1 1.5E+02 0.0032 25.8 7.2 20 215-234 15-34 (142)
126 PRK02793 phi X174 lysis protei 39.9 1.5E+02 0.0033 22.5 6.6 15 222-236 8-22 (72)
127 PF01166 TSC22: TSC-22/dip/bun 39.8 14 0.0003 27.7 0.9 36 224-259 16-51 (59)
128 PF09726 Macoilin: Transmembra 39.7 1.3E+02 0.0029 32.1 8.3 26 225-250 548-573 (697)
129 PF06785 UPF0242: Uncharacteri 38.4 45 0.00098 33.1 4.3 26 218-243 197-222 (401)
130 PRK00295 hypothetical protein; 38.4 1.7E+02 0.0037 22.0 6.6 13 223-235 6-18 (68)
131 PF09602 PhaP_Bmeg: Polyhydrox 38.2 2.8E+02 0.0061 24.8 8.8 41 222-262 78-118 (165)
132 PRK06569 F0F1 ATP synthase sub 38.1 2.8E+02 0.006 24.3 10.1 39 194-232 34-72 (155)
133 PF10883 DUF2681: Protein of u 38.1 1.3E+02 0.0028 24.1 6.1 23 231-253 32-54 (87)
134 PF07047 OPA3: Optic atrophy 3 37.9 66 0.0014 27.0 4.7 34 216-249 99-132 (134)
135 PRK11239 hypothetical protein; 37.2 60 0.0013 30.0 4.7 27 224-250 185-211 (215)
136 PF14931 IFT20: Intraflagellar 37.2 2.5E+02 0.0054 23.5 9.8 60 197-259 55-119 (120)
137 COG5562 Phage envelope protein 37.0 16 0.00035 31.6 0.9 18 61-78 86-106 (137)
138 PF10669 Phage_Gp23: Protein g 36.8 2.3E+02 0.005 23.6 7.6 43 202-248 56-98 (121)
139 PF10186 Atg14: UV radiation r 36.8 3.1E+02 0.0067 24.5 9.4 19 224-242 72-90 (302)
140 PF14362 DUF4407: Domain of un 36.7 2.8E+02 0.006 25.7 9.1 35 221-255 134-168 (301)
141 KOG3433 Protein involved in me 36.6 1.5E+02 0.0033 27.2 7.0 60 202-262 96-155 (203)
142 TIGR01144 ATP_synt_b ATP synth 36.2 2.4E+02 0.0053 23.1 10.2 50 194-243 19-68 (147)
143 TIGR00219 mreC rod shape-deter 36.1 68 0.0015 30.1 5.0 10 234-243 96-105 (283)
144 PRK13729 conjugal transfer pil 36.1 1.5E+02 0.0032 30.6 7.6 22 224-245 99-120 (475)
145 PF11382 DUF3186: Protein of u 36.1 65 0.0014 30.6 4.9 30 222-251 32-61 (308)
146 PF11932 DUF3450: Protein of u 36.1 2.9E+02 0.0064 25.0 9.0 30 222-251 70-99 (251)
147 cd08757 SAM_PNT_ESE Sterile al 36.0 20 0.00043 27.0 1.2 17 59-75 38-54 (68)
148 cd08531 SAM_PNT-ERG_FLI-1 Ster 35.8 20 0.00044 27.6 1.2 18 59-76 40-57 (75)
149 PRK04406 hypothetical protein; 35.8 1.9E+02 0.0041 22.2 6.6 14 222-235 11-24 (75)
150 PRK02119 hypothetical protein; 35.5 1.9E+02 0.0042 22.0 6.6 14 222-235 9-22 (73)
151 cd08533 SAM_PNT-ETS-1,2 Steril 35.4 19 0.00041 27.6 1.0 16 60-75 39-54 (71)
152 PRK13455 F0F1 ATP synthase sub 35.4 2.9E+02 0.0064 23.8 10.6 49 195-243 52-100 (184)
153 cd05030 calgranulins Calgranul 34.9 19 0.00041 27.6 0.9 27 30-72 50-76 (88)
154 PF04849 HAP1_N: HAP1 N-termin 34.5 86 0.0019 30.4 5.5 28 222-249 160-187 (306)
155 PF07888 CALCOCO1: Calcium bin 34.5 3.6E+02 0.0079 28.3 10.2 48 201-248 150-197 (546)
156 PRK15422 septal ring assembly 34.4 1.6E+02 0.0034 23.4 6.0 17 228-244 24-40 (79)
157 PRK09413 IS2 repressor TnpA; R 34.1 74 0.0016 25.8 4.4 23 224-246 80-102 (121)
158 PRK06568 F0F1 ATP synthase sub 34.0 3.2E+02 0.0069 23.8 10.1 55 193-247 27-81 (154)
159 PF11500 Cut12: Spindle pole b 33.9 3.3E+02 0.0071 23.9 9.5 55 196-250 79-133 (152)
160 PRK07353 F0F1 ATP synthase sub 33.9 2.6E+02 0.0056 22.7 10.3 49 195-243 30-78 (140)
161 PRK08476 F0F1 ATP synthase sub 33.6 2.9E+02 0.0062 23.1 10.2 42 194-235 31-72 (141)
162 PF14775 NYD-SP28_assoc: Sperm 33.6 66 0.0014 23.8 3.6 20 227-246 38-57 (60)
163 PF10482 CtIP_N: Tumour-suppre 33.5 1.5E+02 0.0031 25.3 6.0 28 218-245 92-119 (120)
164 COG3074 Uncharacterized protei 33.1 1.9E+02 0.0041 22.8 6.1 22 225-246 21-42 (79)
165 COG1382 GimC Prefoldin, chaper 32.7 1.5E+02 0.0031 25.1 5.9 44 219-262 67-113 (119)
166 cd08203 SAM_PNT Sterile alpha 32.6 23 0.00051 26.2 1.1 17 59-75 36-52 (66)
167 PHA02562 46 endonuclease subun 32.6 3.2E+02 0.0069 27.1 9.3 22 227-248 363-384 (562)
168 cd08540 SAM_PNT-ERG Sterile al 32.6 25 0.00054 27.2 1.2 17 60-76 41-57 (75)
169 COG0711 AtpF F0F1-type ATP syn 32.4 3.2E+02 0.007 23.4 10.2 47 193-239 29-75 (161)
170 KOG0977 Nuclear envelope prote 32.4 99 0.0022 32.3 5.8 25 228-252 55-79 (546)
171 PF14257 DUF4349: Domain of un 32.0 2E+02 0.0044 26.1 7.3 40 212-251 152-191 (262)
172 PLN00040 Protein MAK16 homolog 31.9 1.8E+02 0.004 27.2 7.0 67 198-266 104-175 (233)
173 PF05700 BCAS2: Breast carcino 31.8 1.5E+02 0.0033 26.7 6.4 35 222-256 136-170 (221)
174 KOG4643 Uncharacterized coiled 31.7 1.2E+02 0.0025 34.2 6.4 32 220-251 528-559 (1195)
175 PHA02109 hypothetical protein 31.4 1.5E+02 0.0032 27.2 6.1 41 219-259 190-230 (233)
176 PRK13729 conjugal transfer pil 31.4 1.2E+02 0.0025 31.3 6.0 21 223-243 77-97 (475)
177 PF00038 Filament: Intermediat 31.2 4.2E+02 0.0091 24.3 10.1 36 219-254 220-255 (312)
178 PF07989 Microtub_assoc: Micro 31.2 1.1E+02 0.0023 23.6 4.5 14 230-243 8-21 (75)
179 PRK13922 rod shape-determining 31.1 1.5E+02 0.0033 27.0 6.4 11 233-243 97-107 (276)
180 PF15294 Leu_zip: Leucine zipp 31.0 1.1E+02 0.0024 29.3 5.6 31 220-250 144-174 (278)
181 PF10224 DUF2205: Predicted co 30.9 2.7E+02 0.0057 21.9 8.7 27 223-249 31-57 (80)
182 PLN02678 seryl-tRNA synthetase 30.7 2.4E+02 0.0053 28.5 8.1 35 222-256 71-105 (448)
183 COG5509 Uncharacterized small 30.6 87 0.0019 23.9 3.8 25 224-248 27-51 (65)
184 PRK11637 AmiB activator; Provi 30.5 4.2E+02 0.0091 25.9 9.6 14 218-231 215-228 (428)
185 PRK13923 putative spore coat p 30.0 1.5E+02 0.0033 26.4 5.9 34 221-254 110-143 (170)
186 PF11460 DUF3007: Protein of u 29.8 1.1E+02 0.0024 25.4 4.6 22 240-261 82-103 (104)
187 TIGR02894 DNA_bind_RsfA transc 29.6 1.6E+02 0.0035 26.2 5.9 16 233-248 108-123 (161)
188 PF04599 Pox_G5: Poxvirus G5 p 29.5 1.9E+02 0.004 29.4 7.0 40 193-236 74-113 (425)
189 TIGR02449 conserved hypothetic 29.5 2.3E+02 0.0049 21.6 5.9 34 227-261 26-59 (65)
190 PF14989 CCDC32: Coiled-coil d 29.0 66 0.0014 28.1 3.4 18 221-238 55-72 (148)
191 PF13863 DUF4200: Domain of un 28.9 3E+02 0.0065 21.9 7.5 31 223-253 75-105 (126)
192 cd00632 Prefoldin_beta Prefold 28.8 2E+02 0.0043 22.7 5.9 27 225-251 73-99 (105)
193 COG1792 MreC Cell shape-determ 28.7 92 0.002 29.4 4.6 25 222-246 83-107 (284)
194 PF10481 CENP-F_N: Cenp-F N-te 28.7 2.7E+02 0.0058 27.1 7.6 54 198-251 15-82 (307)
195 PF11853 DUF3373: Protein of u 28.5 57 0.0012 33.5 3.3 26 223-248 32-57 (489)
196 TIGR02338 gimC_beta prefoldin, 28.5 2E+02 0.0043 23.0 5.9 28 226-253 78-105 (110)
197 PRK09343 prefoldin subunit bet 28.4 3.3E+02 0.0072 22.4 7.3 24 229-252 85-108 (121)
198 KOG1055 GABA-B ion channel rec 28.2 23 0.00049 38.5 0.5 59 201-260 726-789 (865)
199 PF00430 ATP-synt_B: ATP synth 28.0 2.3E+02 0.0049 22.4 6.2 10 185-194 29-38 (132)
200 TIGR00219 mreC rod shape-deter 27.8 1.7E+02 0.0037 27.5 6.2 20 226-245 70-89 (283)
201 cd04405 RhoGAP_BRCC3-like RhoG 27.7 27 0.00059 32.6 0.9 16 28-43 1-16 (235)
202 PF13805 Pil1: Eisosome compon 27.6 2.3E+02 0.0051 27.0 7.0 26 224-249 167-192 (271)
203 KOG2483 Upstream transcription 27.5 1.6E+02 0.0034 27.5 5.8 32 218-249 101-139 (232)
204 PF10211 Ax_dynein_light: Axon 27.5 3E+02 0.0065 24.4 7.4 53 196-248 135-189 (189)
205 COG3883 Uncharacterized protei 27.4 5.5E+02 0.012 24.5 9.6 56 200-255 51-106 (265)
206 COG3074 Uncharacterized protei 27.3 2.1E+02 0.0046 22.5 5.5 19 232-250 49-67 (79)
207 PF12325 TMF_TATA_bd: TATA ele 27.3 3.7E+02 0.008 22.5 9.1 22 235-256 95-116 (120)
208 PRK09173 F0F1 ATP synthase sub 27.3 3.7E+02 0.0081 22.5 10.2 48 194-241 26-73 (159)
209 cd08532 SAM_PNT-PDEF-like Ster 27.0 32 0.0007 26.6 1.0 54 22-75 4-59 (76)
210 KOG0561 bHLH transcription fac 26.8 51 0.0011 32.4 2.5 29 220-248 103-131 (373)
211 PF12808 Mto2_bdg: Micro-tubul 26.8 1.5E+02 0.0031 21.7 4.3 41 203-243 10-50 (52)
212 KOG3156 Uncharacterized membra 26.7 1.9E+02 0.0041 27.0 6.1 35 222-256 108-143 (220)
213 PF13815 Dzip-like_N: Iguana/D 26.6 2.8E+02 0.006 22.5 6.5 28 224-251 82-109 (118)
214 PF07798 DUF1640: Protein of u 26.5 1.6E+02 0.0035 25.5 5.4 27 230-256 74-100 (177)
215 PTZ00464 SNF-7-like protein; P 26.4 5E+02 0.011 23.7 8.8 20 210-229 60-79 (211)
216 PRK09413 IS2 repressor TnpA; R 25.9 1.6E+02 0.0035 23.8 5.0 26 225-250 74-99 (121)
217 PRK09039 hypothetical protein; 25.9 5.1E+02 0.011 25.0 9.2 26 224-249 153-178 (343)
218 COG2919 Septum formation initi 25.8 1.8E+02 0.0038 23.8 5.2 26 226-251 61-86 (117)
219 PRK10722 hypothetical protein; 25.7 3.1E+02 0.0067 26.0 7.4 40 216-255 163-202 (247)
220 COG3132 Uncharacterized protei 25.7 93 0.002 28.5 3.8 25 225-249 188-212 (215)
221 PRK04863 mukB cell division pr 25.6 3.8E+02 0.0083 31.3 9.4 60 193-252 984-1043(1486)
222 TIGR01069 mutS2 MutS2 family p 25.5 6.2E+02 0.013 27.3 10.5 9 178-186 473-481 (771)
223 PRK06835 DNA replication prote 25.2 4.5E+02 0.0098 25.2 8.7 34 223-256 37-85 (329)
224 PF09304 Cortex-I_coil: Cortex 25.1 4.1E+02 0.0088 22.2 9.3 55 201-255 16-70 (107)
225 TIGR01834 PHA_synth_III_E poly 25.0 1.1E+02 0.0024 29.8 4.5 27 224-250 291-317 (320)
226 PF05615 THOC7: Tho complex su 24.9 3.6E+02 0.0079 22.2 7.0 40 216-255 75-114 (139)
227 KOG1265 Phospholipase C [Lipid 24.9 3.1E+02 0.0067 30.9 8.1 49 20-68 809-861 (1189)
228 PF10168 Nup88: Nuclear pore c 24.8 6.3E+02 0.014 27.2 10.3 37 223-260 580-616 (717)
229 PF10226 DUF2216: Uncharacteri 24.8 5.5E+02 0.012 23.6 8.8 55 197-251 19-77 (195)
230 KOG4807 F-actin binding protei 24.8 2.2E+02 0.0048 29.2 6.6 44 217-260 388-445 (593)
231 cd07671 F-BAR_PSTPIP1 The F-BA 24.6 5.5E+02 0.012 23.6 10.3 61 197-257 153-213 (242)
232 PF05529 Bap31: B-cell recepto 24.4 4.7E+02 0.01 22.6 8.3 15 233-247 158-172 (192)
233 COG4942 Membrane-bound metallo 24.3 5.6E+02 0.012 26.1 9.3 31 218-248 55-85 (420)
234 PRK14872 rod shape-determining 24.2 1.6E+02 0.0034 28.9 5.4 27 223-249 58-84 (337)
235 PF04102 SlyX: SlyX; InterPro 24.1 3.1E+02 0.0066 20.4 5.9 14 222-235 4-17 (69)
236 PF13942 Lipoprotein_20: YfhG 24.0 4.7E+02 0.01 23.7 7.8 50 215-264 116-167 (179)
237 PF08172 CASP_C: CASP C termin 23.9 4.9E+02 0.011 24.3 8.3 45 213-260 86-130 (248)
238 PF03986 Autophagy_N: Autophag 23.9 36 0.00078 29.4 0.9 13 61-74 25-37 (145)
239 PF02388 FemAB: FemAB family; 23.6 2E+02 0.0044 28.1 6.1 12 66-77 126-137 (406)
240 PF09766 FimP: Fms-interacting 23.5 2.5E+02 0.0055 27.3 6.6 35 217-251 103-137 (355)
241 PF02344 Myc-LZ: Myc leucine z 23.4 1.8E+02 0.0038 19.5 3.8 23 227-249 6-28 (32)
242 PF07407 Seadorna_VP6: Seadorn 23.0 1.1E+02 0.0025 30.3 4.1 16 221-236 45-60 (420)
243 PF08738 Gon7: Gon7 family; I 23.0 1.4E+02 0.003 24.6 4.1 48 220-267 52-100 (103)
244 cd08535 SAM_PNT-Tel_Yan Steril 22.9 45 0.00098 25.2 1.1 17 59-75 37-53 (68)
245 COG2900 SlyX Uncharacterized p 22.9 3.7E+02 0.0081 21.0 6.6 12 222-233 8-19 (72)
246 PF08317 Spc7: Spc7 kinetochor 22.9 3.7E+02 0.008 25.5 7.5 21 57-77 7-27 (325)
247 cd08534 SAM_PNT-GABP-alpha Ste 22.8 43 0.00093 26.8 1.0 57 19-75 10-69 (89)
248 PF06102 DUF947: Domain of unk 22.8 4.8E+02 0.01 22.8 7.7 44 222-265 79-124 (168)
249 PF01763 Herpes_UL6: Herpesvir 22.8 2E+02 0.0043 30.2 6.0 36 222-257 370-405 (557)
250 PTZ00454 26S protease regulato 22.7 3.4E+02 0.0074 26.7 7.5 29 223-251 30-58 (398)
251 cd07666 BAR_SNX7 The Bin/Amphi 22.7 5.3E+02 0.012 24.0 8.3 21 206-226 154-174 (243)
252 PF01920 Prefoldin_2: Prefoldi 22.6 2.9E+02 0.0063 21.0 5.7 28 224-251 71-98 (106)
253 PRK02292 V-type ATP synthase s 22.6 5E+02 0.011 22.3 8.7 33 226-258 74-106 (188)
254 PF04949 Transcrip_act: Transc 22.6 5.5E+02 0.012 22.8 8.7 17 213-229 104-120 (159)
255 PF08537 NBP1: Fungal Nap bind 22.5 4.1E+02 0.0088 26.1 7.7 50 201-253 122-199 (323)
256 PF12718 Tropomyosin_1: Tropom 22.4 2.3E+02 0.005 24.1 5.5 25 224-248 37-61 (143)
257 PF13747 DUF4164: Domain of un 22.3 3.9E+02 0.0085 21.0 8.6 49 200-248 10-58 (89)
258 PRK15422 septal ring assembly 22.3 2.9E+02 0.0063 21.9 5.5 15 234-248 51-65 (79)
259 KOG2751 Beclin-like protein [S 22.3 3.8E+02 0.0083 27.4 7.7 47 205-251 147-205 (447)
260 smart00251 SAM_PNT SAM / Point 22.2 44 0.00096 25.9 1.0 56 19-74 8-66 (82)
261 cd08538 SAM_PNT-ESE-2-like Ste 22.2 44 0.00096 26.2 1.0 17 59-75 43-59 (78)
262 PRK10884 SH3 domain-containing 22.2 5.9E+02 0.013 23.0 10.1 30 221-250 131-160 (206)
263 KOG0163 Myosin class VI heavy 22.1 5.6E+02 0.012 28.7 9.2 14 205-218 925-938 (1259)
264 PF06936 Selenoprotein_S: Sele 22.1 4.3E+02 0.0093 23.8 7.4 8 257-264 122-129 (190)
265 PF11471 Sugarporin_N: Maltopo 21.9 2.2E+02 0.0049 21.0 4.6 22 227-248 30-51 (60)
266 PF07334 IFP_35_N: Interferon- 21.9 2.1E+02 0.0045 22.5 4.6 26 224-249 2-27 (76)
267 cd07647 F-BAR_PSTPIP The F-BAR 21.6 6E+02 0.013 22.9 10.3 62 197-258 153-214 (239)
268 COG2433 Uncharacterized conser 21.3 5.8E+02 0.012 27.4 9.0 9 66-74 173-181 (652)
269 KOG0977 Nuclear envelope prote 21.3 2.3E+02 0.005 29.6 6.2 27 225-251 165-191 (546)
270 cd04779 HTH_MerR-like_sg4 Heli 21.3 5E+02 0.011 21.8 7.5 38 224-261 83-120 (134)
271 PRK14872 rod shape-determining 21.3 1.4E+02 0.003 29.4 4.3 19 231-249 59-77 (337)
272 cd07624 BAR_SNX7_30 The Bin/Am 21.0 2.3E+02 0.0049 25.0 5.4 30 220-249 19-48 (200)
273 cd05029 S-100A6 S-100A6: S-100 21.0 70 0.0015 24.7 1.9 33 24-72 44-76 (88)
274 PF04880 NUDE_C: NUDE protein, 21.0 82 0.0018 27.9 2.5 21 231-251 26-46 (166)
275 COG4026 Uncharacterized protei 20.8 7E+02 0.015 23.8 8.6 22 230-251 164-185 (290)
276 cd08541 SAM_PNT-FLI-1 Sterile 20.8 49 0.0011 26.6 1.0 58 19-76 8-69 (91)
277 TIGR02010 IscR iron-sulfur clu 20.8 37 0.0008 27.9 0.3 24 19-42 62-85 (135)
278 KOG1962 B-cell receptor-associ 20.8 3.9E+02 0.0083 24.8 6.9 28 222-249 172-199 (216)
279 cd04776 HTH_GnyR Helix-Turn-He 20.8 4.6E+02 0.0099 21.2 7.2 28 224-251 82-109 (118)
280 COG3937 Uncharacterized conser 20.5 2.3E+02 0.0051 23.7 4.9 41 200-253 63-107 (108)
281 PF12221 HflK_N: Bacterial mem 20.4 66 0.0014 22.4 1.5 11 33-43 23-33 (42)
282 PF10224 DUF2205: Predicted co 20.4 3.5E+02 0.0075 21.3 5.6 58 193-250 8-65 (80)
283 PF09325 Vps5: Vps5 C terminal 20.4 5.3E+02 0.011 22.4 7.5 14 211-224 138-151 (236)
284 PF11221 Med21: Subunit 21 of 20.4 3.3E+02 0.0073 22.9 6.0 19 225-243 107-125 (144)
285 PF05308 Mito_fiss_reg: Mitoch 20.3 90 0.0019 29.3 2.8 24 229-252 122-145 (253)
286 PF07544 Med9: RNA polymerase 20.2 2.3E+02 0.0049 21.9 4.6 23 226-248 56-78 (83)
287 COG0172 SerS Seryl-tRNA synthe 20.2 3.8E+02 0.0082 27.2 7.2 34 223-256 69-102 (429)
288 cd08539 SAM_PNT-ESE-3-like Ste 20.2 50 0.0011 25.7 0.9 18 59-76 41-58 (74)
289 PF01475 FUR: Ferric uptake re 20.1 94 0.002 24.6 2.5 35 31-79 24-61 (120)
290 PF02187 GAS2: Growth-Arrest-S 20.1 45 0.00098 25.9 0.6 12 62-73 55-66 (73)
291 PF03962 Mnd1: Mnd1 family; I 20.0 3.4E+02 0.0074 24.0 6.3 52 215-266 62-118 (188)
No 1
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.39 E-value=5.2e-13 Score=124.77 Aligned_cols=61 Identities=31% Similarity=0.438 Sum_probs=56.7
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQ 254 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~ 254 (267)
..|+..+||+-|++||||+|++||+|||+|+.|||.+|..||..|+.|.++|+.|++.+.+
T Consensus 284 ~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~ 344 (348)
T KOG3584|consen 284 GAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH 344 (348)
T ss_pred cchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 3567788999999999999999999999999999999999999999999999999987754
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=99.30 E-value=1.2e-11 Score=91.01 Aligned_cols=55 Identities=47% Similarity=0.636 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 198 VVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 198 ~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
.++++.+|+++||+||++||.||++|+.+||.++..|+.+|..|..++..|....
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999987653
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.24 E-value=5.5e-11 Score=87.36 Aligned_cols=58 Identities=38% Similarity=0.593 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 198 VVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQE 255 (267)
Q Consensus 198 ~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~ 255 (267)
+..++.+|+++||+||++||.||++|+.+||.+|..|+.+|..|+.++..|......-
T Consensus 2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999998775543
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.17 E-value=6.9e-11 Score=117.74 Aligned_cols=58 Identities=45% Similarity=0.654 Sum_probs=50.0
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.+|.++-||+.|||||||||+.||+|||+|+..||.++..|..||+.|+++...|.+.
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~q 331 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQ 331 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4678899999999999999999999999999999999988777777777776666443
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.15 E-value=2.2e-10 Score=81.94 Aligned_cols=52 Identities=46% Similarity=0.695 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 198 VVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 198 ~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
.++++.+|. +||+||++||.||++|+.+||.++..|+.+|..|..++..|+.
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788888 9999999999999999999999999999999999999998864
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.05 E-value=2.1e-10 Score=112.58 Aligned_cols=65 Identities=34% Similarity=0.463 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037676 196 EVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQATE 261 (267)
Q Consensus 196 e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~~ 261 (267)
|+++.||.||+|||.+||++||+|||+|++.||.+|.....||.+|++++++|+. .+.-|++.|+
T Consensus 246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~-~N~sLl~qL~ 310 (472)
T KOG0709|consen 246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELEL-SNRSLLAQLK 310 (472)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhh-ccHHHHHHHH
Confidence 6788899999999999999999999999999999999999999999999998854 3555665554
No 7
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=98.72 E-value=7.1e-08 Score=88.77 Aligned_cols=56 Identities=36% Similarity=0.440 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 198 VVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRV 253 (267)
Q Consensus 198 ~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k 253 (267)
-+||-+||++|||.+|+-+|-|||+.++++|.++..|.+||..|+.+...|.+.-+
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~ 121 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINE 121 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999988888877766655433
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.02 E-value=4.1e-07 Score=71.60 Aligned_cols=54 Identities=35% Similarity=0.495 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 195 HEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 195 ~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
-+....|..||.+|||.+|+.||.||..++++||.++..|+.+...|..++..+
T Consensus 24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l 77 (92)
T PF03131_consen 24 EQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSEL 77 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999999999999999977655555555444443
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.99 E-value=3.6e-05 Score=71.73 Aligned_cols=79 Identities=24% Similarity=0.267 Sum_probs=59.6
Q ss_pred CCCCC-CCCCChhhHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 037676 185 GNRKR-IIDGPHEVVVERRQR-RMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELE---RKRVQEDIQA 259 (267)
Q Consensus 185 rgrk~-~~~~~~e~~~erRqr-R~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~---~~~k~~~~e~ 259 (267)
++++- +++-++|..+..|.. ..++|||+|.+||+||-+++..||.+|..|+-+|..|-..+..|. ...++.++|-
T Consensus 188 ~~~~~pispid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~h 267 (279)
T KOG0837|consen 188 PELKEPISPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEH 267 (279)
T ss_pred cccCCCCCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45553 334456655544444 468999999999999999999999999999999998887766554 5566777777
Q ss_pred hhhc
Q 037676 260 TEDG 263 (267)
Q Consensus 260 ~~~~ 263 (267)
+..|
T Consensus 268 i~ng 271 (279)
T KOG0837|consen 268 IHNG 271 (279)
T ss_pred Hhcc
Confidence 7655
No 10
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.35 E-value=0.0008 Score=62.54 Aligned_cols=64 Identities=23% Similarity=0.393 Sum_probs=55.5
Q ss_pred CCCCCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 188 KRIIDGPHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 188 k~~~~~~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
++....+.+++..+-..|..||=++|++||.+.|.-..+...+|..|+.||..|+.++.+|+..
T Consensus 181 ~~~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~e 244 (269)
T KOG3119|consen 181 KSKLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKE 244 (269)
T ss_pred hccCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566777777777888899999999999999999999999999999999999999988654
No 11
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.29 E-value=0.0021 Score=54.64 Aligned_cols=60 Identities=33% Similarity=0.439 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 195 HEVVVERRQRRMIKNRESAARSRARKQAYTVELELEL-------TQLKAENDKLKEAVKELERKRVQ 254 (267)
Q Consensus 195 ~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v-------~~L~~EN~~L~~~l~~L~~~~k~ 254 (267)
-|....|..||-+|||=-|+-||.|+-..-++||.+. .+|++||.++++++..++.++..
T Consensus 47 eEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 47 EEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678888999999999999999999988988754 55677777777777766666543
No 12
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.25 E-value=0.0021 Score=60.83 Aligned_cols=57 Identities=33% Similarity=0.391 Sum_probs=46.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Q 037676 204 RRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERK---RVQEDIQAT 260 (267)
Q Consensus 204 rR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~---~k~~~~e~~ 260 (267)
|..+.|..+|.|=|+||++-.+.|+.++..|+.+|.+||.+..+|+.+ .|+.++|..
T Consensus 230 rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 230 RKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555567999999999999999999999999999999999999754 345555543
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=95.98 E-value=0.0083 Score=61.69 Aligned_cols=50 Identities=34% Similarity=0.412 Sum_probs=43.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 200 ERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 200 erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
.|-.||.=|||.+|++||+||-.-|..||.+|..|..|-+.|.++..++.
T Consensus 489 IrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d 538 (604)
T KOG3863|consen 489 IRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELD 538 (604)
T ss_pred hhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999999999999999988888887665553
No 14
>PHA03155 hypothetical protein; Provisional
Probab=89.94 E-value=0.58 Score=39.18 Aligned_cols=38 Identities=34% Similarity=0.359 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHh
Q 037676 223 YTVELELELTQLKAENDKLKEAVKE--------LERKRVQEDIQAT 260 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~--------L~~~~k~~~~e~~ 260 (267)
-+++|+.++.+|+-||..|++++.. |...+++.+|-..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~ 54 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSL 54 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHH
Confidence 4789999999999999999999966 6677777766544
No 15
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=89.35 E-value=0.016 Score=56.46 Aligned_cols=56 Identities=27% Similarity=0.302 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 037676 196 EVVVERRQRRMIKNRESAAR---SRARKQAYTVELELELTQLK-AENDKLKEAVKELERK 251 (267)
Q Consensus 196 e~~~erRqrR~ikNReSA~r---SR~RKk~y~~eLE~~v~~L~-~EN~~L~~~l~~L~~~ 251 (267)
.+.+.++..|+.+|+.+|.. ||.|++.++.+|+.+|+.|+ .+|..|..++..|...
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne 208 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNE 208 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccH
Confidence 45678999999999999999 99999999999999999999 9999998888887654
No 16
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=86.24 E-value=1.3 Score=37.34 Aligned_cols=28 Identities=36% Similarity=0.489 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 220 KQAYTVELELELTQLKAENDKLKEAVKE 247 (267)
Q Consensus 220 Kk~y~~eLE~~v~~L~~EN~~L~~~l~~ 247 (267)
|..-+++|+.++.+|+-||..|++++..
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456899999999999999999999875
No 17
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=85.89 E-value=0.15 Score=49.73 Aligned_cols=59 Identities=34% Similarity=0.462 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 037676 196 EVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLK-EAVKELERKRVQ 254 (267)
Q Consensus 196 e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~-~~l~~L~~~~k~ 254 (267)
+.-++++.+=+++||.+|-+||.|||.....|+.+...+..+|..|. .+++.|..+.++
T Consensus 280 ~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~ 339 (395)
T KOG1414|consen 280 EDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQ 339 (395)
T ss_pred CCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhh
Confidence 34455668889999999999999999999999999999999999998 555555444443
No 18
>PHA03162 hypothetical protein; Provisional
Probab=85.62 E-value=0.57 Score=40.15 Aligned_cols=41 Identities=32% Similarity=0.400 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
Q 037676 219 RKQAYTVELELELTQLKAENDKLKEAVKE------------LERKRVQEDIQA 259 (267)
Q Consensus 219 RKk~y~~eLE~~v~~L~~EN~~L~~~l~~------------L~~~~k~~~~e~ 259 (267)
+++.-+++|+.++.+|+.||..|++++.. |...+++.+|-.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s 62 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGA 62 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHH
Confidence 35667899999999999999999999942 455566666543
No 19
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=81.45 E-value=2.6 Score=31.54 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEA 244 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~ 244 (267)
..+.+|+.++.+|+.||..||..
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45668888888888888888763
No 20
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=80.95 E-value=4.8 Score=32.67 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 217 RARKQAYTVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 217 R~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
..+.++.+.+++.++..|+.+|..|+++++.|..
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3456677888999999999999999999988865
No 21
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=78.80 E-value=6.9 Score=28.65 Aligned_cols=31 Identities=35% Similarity=0.509 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 218 ARKQAYTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 218 ~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
...+..+.+|+.++..|+.+|..|+.+++.|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455668899999999999999999999888
No 22
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.49 E-value=26 Score=31.76 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 214 ARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 214 ~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
.......+.-+..++..+..|+++|.+|+++++.++.+.
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 117 NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455566666778888888888887776554
No 23
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=78.38 E-value=9.3 Score=29.03 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERKRVQEDIQATE 261 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~~ 261 (267)
++.|-....+|+.||..|+.++..+..+ ...++++..
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~E-R~~L~ekne 45 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREE-RAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4444455567888999999888888665 344444444
No 24
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=75.30 E-value=5.5 Score=33.00 Aligned_cols=29 Identities=45% Similarity=0.485 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 220 KQAYTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 220 Kk~y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
=|.++.+|..+...|+.||..|++++.++
T Consensus 27 LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 27 LKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777778888888888887776
No 25
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=73.42 E-value=6.7 Score=32.18 Aligned_cols=30 Identities=37% Similarity=0.482 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
|.++.+|..+...|+.||..|++++.++..
T Consensus 28 K~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 28 KKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666666666665544
No 26
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=72.41 E-value=13 Score=37.84 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=50.2
Q ss_pred CCChhhHHHHHHHHHHHhHHHHHHHHHHHHHH-------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 192 DGPHEVVVERRQRRMIKNRESAARSRARKQAY-------T---VELELELTQLKAENDKLKEAVKELERKRV 253 (267)
Q Consensus 192 ~~~~e~~~erRqrR~ikNReSA~rSR~RKk~y-------~---~eLE~~v~~L~~EN~~L~~~l~~L~~~~k 253 (267)
....=|++.|+.|-|+.--||-++....=... + .+|..+|.+|+..|..|..+|+.|+....
T Consensus 246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 34466889999999999999999888654432 2 57889999999999999999988876543
No 27
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=71.38 E-value=20 Score=28.76 Aligned_cols=37 Identities=35% Similarity=0.352 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQA 259 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~ 259 (267)
..+.+|+.++..|..||..|+.++..- .+.+++++.-
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e-~~Ek~~Ll~l 85 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTE-REEKQELLKL 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 345556666666666666666655443 3335555543
No 28
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=71.19 E-value=8.5 Score=30.67 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 219 RKQAYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 219 RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
.|+.+++.|..++..|+.+|..|..++.++.
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3678899999999999999999999988764
No 29
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=69.42 E-value=19 Score=33.58 Aligned_cols=53 Identities=30% Similarity=0.352 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 195 HEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 195 ~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
+.+...+|-|=..||.|==.+-|+ -+.-+..|..++..|+..|-.|.+++.=|
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~-~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRK-QQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666655566554444422 22334556666666666666666655544
No 30
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=68.09 E-value=22 Score=26.65 Aligned_cols=32 Identities=31% Similarity=0.383 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 219 RKQAYTVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 219 RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
.....+..++.++..|+.||.+|+.++..|..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45667788899999999999999999888754
No 31
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=67.51 E-value=30 Score=30.66 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 217 RARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQE 255 (267)
Q Consensus 217 R~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~ 255 (267)
..+.+..+.+|..++..|+.||..|..++..+++.++.-
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888899999999999999888888776543
No 32
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=66.90 E-value=73 Score=26.44 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=45.7
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQ 258 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e 258 (267)
++.+..+.|+.+..++-+.|...+..-.+...+.+.++...+.+-..+......--+..++++++
T Consensus 28 pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~ 92 (156)
T PRK05759 28 PIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKA 92 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888888888888888888776666666655544444444444433
No 33
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=66.51 E-value=67 Score=31.03 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=48.2
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVE---LELELTQLKAENDKLKEAVKELERKRVQEDIQAT 260 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~e---LE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~ 260 (267)
.-++...+|+.+++.-=.--++-|+.+.+-+.| ||.+..+|++.-.+|.+++..|++-..+-..++.
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r~ 293 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKKRV 293 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345566788888884444556667777776554 5578889999999999999988877766665553
No 34
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=66.19 E-value=8.4 Score=32.40 Aligned_cols=24 Identities=33% Similarity=0.275 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 220 KQAYTVELELELTQLKAENDKLKE 243 (267)
Q Consensus 220 Kk~y~~eLE~~v~~L~~EN~~L~~ 243 (267)
=|+.+.+||.++..|++||.-|+.
T Consensus 72 Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 72 LKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677888888888888888876
No 35
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=65.97 E-value=72 Score=29.43 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=42.5
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDI 257 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~ 257 (267)
++-+..++|+.++.++-+.|...+..=++...+.+.++..++.+-..+..+...--++.+++++
T Consensus 29 Pi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il 92 (250)
T PRK14474 29 PIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLL 92 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888888888887777777777777776666665555544443344444443
No 36
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=65.95 E-value=87 Score=27.35 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=34.4
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAV 245 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l 245 (267)
++....++|+.++.+.-+.|.+.+..-.....+.|.++...+.|-..+....
T Consensus 55 PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 55 RIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777777777777777777776666555555444433
No 37
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=65.75 E-value=18 Score=37.76 Aligned_cols=61 Identities=25% Similarity=0.131 Sum_probs=47.4
Q ss_pred CCCChhhHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 191 IDGPHEVVVERRQRRMIKNRESAARSRAR---KQAYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 191 ~~~~~e~~~erRqrR~ikNReSA~rSR~R---Kk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.|..+=++..|..|-.+.-..|-++-+.- =++.+.+|+.+..+|+.||..|+++|..|..+
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 35566667777777777766666655543 46778899999999999999999999999764
No 38
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=65.68 E-value=24 Score=27.09 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
+|..+...|..+|..|+.+...|
T Consensus 29 eLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 29 ELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333333344444444333
No 39
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=65.04 E-value=21 Score=25.05 Aligned_cols=27 Identities=44% Similarity=0.608 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+.|..+...|..||..|+.++..|..+
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777778888888888888888777654
No 40
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=64.29 E-value=25 Score=26.04 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhh
Q 037676 226 ELELELTQLKAENDKLKEAVKELERKRVQE--DIQATED 262 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~--~~e~~~~ 262 (267)
.++..+..++.||+.|+..++.+.+..+.- +-|-+++
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455667888888888888887776654 2344444
No 41
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=63.55 E-value=29 Score=34.91 Aligned_cols=57 Identities=26% Similarity=0.292 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHhHHH-------------------------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 197 VVVERRQRRMIKNRES-------------------------AAR--SRARKQAYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 197 ~~~erRqrR~ikNReS-------------------------A~r--SR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
..+|||.|-.|.+|.- +-. +=+++.+.+.|++.+-..|+..|..|..++++|+
T Consensus 238 NeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~rieeLk 317 (411)
T KOG1318|consen 238 NEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALRIEELK 317 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 4567888888887751 111 2233344456667777778888889988888887
Q ss_pred HHHH
Q 037676 250 RKRV 253 (267)
Q Consensus 250 ~~~k 253 (267)
.+..
T Consensus 318 ~~~~ 321 (411)
T KOG1318|consen 318 SEAG 321 (411)
T ss_pred HHHH
Confidence 6643
No 42
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=63.32 E-value=61 Score=30.86 Aligned_cols=67 Identities=24% Similarity=0.321 Sum_probs=40.8
Q ss_pred CCCCCCCCCCh-hhHHHHHHHHHHHhHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 185 GNRKRIIDGPH-EVVVERRQRRMIKNRESA--ARSRARKQAY-TVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 185 rgrk~~~~~~~-e~~~erRqrR~ikNReSA--~rSR~RKk~y-~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
|.|.|..--.. ||...|+.|-...-.-+- +..|.-+-+| +.+|+.+...|..||..|+++.+.|.-+
T Consensus 56 rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~ 126 (292)
T KOG4005|consen 56 RKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAK 126 (292)
T ss_pred HHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444322334 555556655433222222 2334445555 6799999999999999999988877644
No 43
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=63.00 E-value=15 Score=36.26 Aligned_cols=28 Identities=39% Similarity=0.516 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKEAVKELERKRV 253 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l~~L~~~~k 253 (267)
.|..|...|+.||+.|+.+++.|+..++
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555556666666666666666655554
No 44
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=62.30 E-value=19 Score=26.26 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
.+...++..|+.||..|+.++.-+.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677788888888888876553
No 45
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=61.46 E-value=10 Score=26.65 Aligned_cols=43 Identities=37% Similarity=0.366 Sum_probs=13.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 203 QRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVK 246 (267)
Q Consensus 203 qrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~ 246 (267)
+++...|++=|+..-.. ..-+.+||.++..|..||..|+.++.
T Consensus 3 ~k~~~qn~~laK~Ns~l-~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSAL-SIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHH-HhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 45556666666554333 24577899999999999999988653
No 46
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=61.05 E-value=84 Score=28.14 Aligned_cols=51 Identities=33% Similarity=0.403 Sum_probs=37.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 201 RRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 201 rRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
...++.+++-++-..+=..-+..+..++.++..|+-|+..|..++..++.+
T Consensus 72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777788888888888888888887777655
No 47
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=61.00 E-value=75 Score=26.53 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=34.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 201 RRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 201 rRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
.+..|=...||.......++..-+..|+..+..|+.+++.+.+++..++.
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~ 94 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEE 94 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677777777777777777777777777777777776665543
No 48
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=59.62 E-value=43 Score=26.92 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 219 RKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQ 258 (267)
Q Consensus 219 RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e 258 (267)
=|+-|-...|.+|..|+.+|..|.+++..|..+...+-.|
T Consensus 39 LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 39 LKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888899999999999999999999998776655544
No 49
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=59.54 E-value=27 Score=28.60 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELERKRVQ 254 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~ 254 (267)
+-+.+|...+..|.+||.+|+.+...|.+...+
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888888888888888887666444
No 50
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=59.26 E-value=1.2e+02 Score=26.14 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=37.4
Q ss_pred CChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 193 GPHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVK 246 (267)
Q Consensus 193 ~~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~ 246 (267)
.++-+..++|+.++...-+.|...+..=.+...+.+.++...+.+-..+...-.
T Consensus 41 kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~ 94 (175)
T PRK14472 41 GPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGK 94 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888888888888877777777777777666555555544433
No 51
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=59.01 E-value=67 Score=28.80 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 213 AARSRARKQAYTVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 213 A~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
.+.-=++|++|+.+-+.+...++++..+|+.+++..++
T Consensus 137 ~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 137 YKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444567788888888777788877777777766543
No 52
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=58.75 E-value=1.1e+02 Score=25.74 Aligned_cols=62 Identities=23% Similarity=0.284 Sum_probs=41.7
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQE 255 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~ 255 (267)
++-+..++|+.++.+.-+.|...+..=.++..+.+.++...+.+-..+..+...--+..+++
T Consensus 29 pi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~ 90 (159)
T PRK13461 29 KIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEE 90 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888888888888888888888777776666555544433333333333
No 53
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=58.74 E-value=1.1e+02 Score=25.83 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=38.5
Q ss_pred CChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 193 GPHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAV 245 (267)
Q Consensus 193 ~~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l 245 (267)
.++-+..++|+.++.++-+.|...+..=.+...+.|.++...+.+-..+..+-
T Consensus 31 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A 83 (164)
T PRK14471 31 KPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEA 83 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888888888888888888877776666655444433
No 54
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=58.51 E-value=1.2e+02 Score=26.04 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 195 HEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQ 254 (267)
Q Consensus 195 ~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~ 254 (267)
+.+..+.|+.++.+.-..|...+..=.....+.+.++...+.+-..+..+...--+..++
T Consensus 44 I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~ 103 (174)
T PRK07352 44 LGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRA 103 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888888887777777777777777766655555555444433333333
No 55
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=58.31 E-value=43 Score=24.77 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+.+||.++..++-....++.+++++.+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ 29 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISES 29 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888888777544
No 56
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=58.23 E-value=1.3e+02 Score=27.00 Aligned_cols=48 Identities=25% Similarity=0.357 Sum_probs=35.0
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKL 241 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L 241 (267)
++....++|+.++.+.-+.|.+.+..=.+.+.+.|.++..-+.+-..+
T Consensus 77 pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~I 124 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSI 124 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888988888888888877777777777665544444444
No 57
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.11 E-value=45 Score=25.57 Aligned_cols=12 Identities=50% Similarity=0.814 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 037676 232 TQLKAENDKLKE 243 (267)
Q Consensus 232 ~~L~~EN~~L~~ 243 (267)
..|+.+|..|+.
T Consensus 42 ~~L~~en~~L~~ 53 (72)
T PF06005_consen 42 EELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 58
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=58.01 E-value=1.2e+02 Score=25.75 Aligned_cols=50 Identities=24% Similarity=0.254 Sum_probs=33.3
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKE 243 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~ 243 (267)
++-+..++|+.++.+.-..|.+.+..=.+...+.|.++...+.+-..+..
T Consensus 46 Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~ 95 (156)
T CHL00118 46 PLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEIT 95 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777777777777777777766655544444443
No 59
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=57.46 E-value=24 Score=29.35 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 230 ELTQLKAENDKLKEAVKELERKRVQE 255 (267)
Q Consensus 230 ~v~~L~~EN~~L~~~l~~L~~~~k~~ 255 (267)
+..+|++||.-|+-+++-|..+..+.
T Consensus 80 k~~~LeEENNlLklKievLLDMLtet 105 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDMLAET 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578889999998888887765443
No 60
>PRK14127 cell division protein GpsB; Provisional
Probab=57.38 E-value=31 Score=28.61 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
++.|..++..|+++|.+|+.++.+++..
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666777777777776666554
No 61
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=56.90 E-value=98 Score=28.96 Aligned_cols=61 Identities=23% Similarity=0.282 Sum_probs=37.0
Q ss_pred CCCChhhHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 191 IDGPHEVVVERRQRRMIKNRE---SAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 191 ~~~~~e~~~erRqrR~ikNRe---SA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.+-.-++-.+||.|-.+.=|. .|+.-=..-+..+.+||.+...|+.++..|+.++..|...
T Consensus 188 ~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 188 VEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred hhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344555554443333 3333333344567789999999999999999988777544
No 62
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=56.28 E-value=89 Score=28.97 Aligned_cols=35 Identities=9% Similarity=0.139 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVKELERKRVQE 255 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~ 255 (267)
+..++.|+.+|..|+-.++++..+++++.+.+++.
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 55677778888888888888888888887777664
No 63
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.00 E-value=62 Score=25.39 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=23.8
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 214 ARSRARKQ----AYTVELELELTQLKAENDKLKEAVK 246 (267)
Q Consensus 214 ~rSR~RKk----~y~~eLE~~v~~L~~EN~~L~~~l~ 246 (267)
.+-|.||. ..+..|..++..|.++|..|+.+++
T Consensus 63 ~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 63 KRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444454 3566777888999999999998875
No 64
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=55.54 E-value=1.4e+02 Score=25.91 Aligned_cols=62 Identities=10% Similarity=0.126 Sum_probs=38.1
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQE 255 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~ 255 (267)
++-+..++|+..+.++=..|.+.+..=++...+.+.++...+.+-..+......--++.++.
T Consensus 48 PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~ 109 (184)
T CHL00019 48 VLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKEN 109 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777888888887888777777666766777666655555444444433333333333
No 65
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=55.31 E-value=1.1e+02 Score=24.51 Aligned_cols=58 Identities=28% Similarity=0.394 Sum_probs=34.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037676 202 RQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQATE 261 (267)
Q Consensus 202 RqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~~ 261 (267)
+..|-++.-+.+.+.+..|.+-+..|..++..|+.+...|...+..+.. -...|+.+.
T Consensus 61 k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~--Y~~fL~~v~ 118 (126)
T PF13863_consen 61 KRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKK--YEEFLEKVV 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhc
Confidence 3344444555555666666666677777777777777777777666532 334454443
No 66
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=55.21 E-value=1.4e+02 Score=25.77 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=35.3
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKE 247 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~ 247 (267)
++-+..++|+.++.+.-+.|...+..=.+...+.|.++...+.+-..+..+-..
T Consensus 42 pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~ 95 (173)
T PRK13453 42 PLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKV 95 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777777777777766665555555544433
No 67
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=55.16 E-value=1.3e+02 Score=25.45 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=38.2
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKE 247 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~ 247 (267)
++-+..++|+.++.++-+.|...+..=.+...+.+.++...+.+-..+..+-..
T Consensus 32 pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~ 85 (164)
T PRK14473 32 PVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQE 85 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888888888888877777777777777666655555554433
No 68
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=55.07 E-value=81 Score=25.78 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037676 234 LKAENDKLKEAVKELERK 251 (267)
Q Consensus 234 L~~EN~~L~~~l~~L~~~ 251 (267)
|++|....+++|++|++.
T Consensus 81 l~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 81 LKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333355555555543
No 69
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.61 E-value=32 Score=27.88 Aligned_cols=19 Identities=42% Similarity=0.368 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKE 243 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~ 243 (267)
..|+.+...|+.|...|+.
T Consensus 44 ~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 44 AKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 3444444444444444443
No 70
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=54.29 E-value=35 Score=30.43 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 037676 236 AENDKLKEAVKEL 248 (267)
Q Consensus 236 ~EN~~L~~~l~~L 248 (267)
.+|+.+..++..+
T Consensus 71 r~Ne~~~~~~~~l 83 (225)
T PF04340_consen 71 RENEAIFQRLHRL 83 (225)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555444444
No 71
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=54.01 E-value=88 Score=33.37 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
+-+..+..+|+.|...|+.+++..+
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~ke 565 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKE 565 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666555443
No 72
>PF08563 P53_TAD: P53 transactivation motif; InterPro: IPR013872 The binding of this protein by regulatory proteins regulates p53 transcription activation. This entry is comprised of a single amphipathic alpha helix and contains a highly conserved motif [, ]. ; GO: 0005515 protein binding; PDB: 1YCQ_B 2Z5T_R 3DAB_B 3DAC_B 2Z5S_Q 2K8F_B 2L14_B 1YCR_B.
Probab=53.48 E-value=9.1 Score=24.20 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=12.0
Q ss_pred ccccCcccccccHHHHHHHH
Q 037676 21 SFSIPILLCKKTVEEVWSEI 40 (267)
Q Consensus 21 SlTLpr~Ls~KTVDEVWrdI 40 (267)
.+++-.+|||-|-++.|+-+
T Consensus 3 ~~~~~~PLSQeTF~~LW~~l 22 (25)
T PF08563_consen 3 EESPELPLSQETFSDLWNLL 22 (25)
T ss_dssp -SS-----STCCHHHHHHTS
T ss_pred ccCCCCCccHHHHHHHHHhc
Confidence 35566789999999999854
No 73
>PF14645 Chibby: Chibby family
Probab=52.48 E-value=49 Score=27.47 Aligned_cols=33 Identities=30% Similarity=0.264 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 227 LELELTQLKAENDKLKEAVKELERKRVQEDIQA 259 (267)
Q Consensus 227 LE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~ 259 (267)
|..+..+|++||.-|+-+++-|..+..+.-+|.
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlDMLtettae~ 108 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLDMLTETTAEA 108 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667889999999999888888877766654
No 74
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=52.13 E-value=41 Score=27.88 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELERKRVQ 254 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~ 254 (267)
+-+.+|...+..|.+||..|+.+...|.+...+
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888899999999888888766554
No 75
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=52.11 E-value=1.6e+02 Score=25.45 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=27.9
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEA 244 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~ 244 (267)
++-+..++|+.++...-+.|...+..=+....+.+.++...+.+-..+...
T Consensus 46 Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~ 96 (167)
T PRK08475 46 PLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVET 96 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666555555555555555444444444433
No 76
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=52.07 E-value=1.2e+02 Score=25.64 Aligned_cols=54 Identities=28% Similarity=0.209 Sum_probs=41.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 205 RMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQ 258 (267)
Q Consensus 205 R~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e 258 (267)
|.++.|..=--.|+-=|+.|..||-+...++.-|..|.++++-|+-..+++-..
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555666678899999999999999999999999998877776544
No 77
>smart00340 HALZ homeobox associated leucin zipper.
Probab=51.87 E-value=33 Score=24.34 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 228 ELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 228 E~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
..=...|.+||.+|++++++|..
T Consensus 11 Krcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 11 KRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456799999999999998864
No 78
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=50.11 E-value=1.5e+02 Score=29.56 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=36.8
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVK 246 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~ 246 (267)
++-+..++|+..+.++=+.|...+.+=.++..+.|.++...+.|-..+..+-.
T Consensus 25 Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~ 77 (445)
T PRK13428 25 PVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAR 77 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888888888777777777777766665555555544433
No 79
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=50.08 E-value=78 Score=28.92 Aligned_cols=33 Identities=27% Similarity=0.215 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 216 SRARKQAYTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 216 SR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
+--..-....+|.++...|++||..|+.++.++
T Consensus 63 ~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 63 GVFESLASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556677777777777777777777755
No 80
>PRK14127 cell division protein GpsB; Provisional
Probab=50.07 E-value=38 Score=28.05 Aligned_cols=28 Identities=11% Similarity=0.245 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
|++++...+..|..||..|+.++..|+.
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~ 58 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKA 58 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555444443
No 81
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=49.89 E-value=47 Score=24.81 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
++||+.++..|+.|..+++..+..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688889999999988888876544
No 82
>PF06311 NumbF: NUMB domain; InterPro: IPR010449 This entry represents a domain found in the cell-fate determinant Numb, and in related proteins. In Drosophila, two signalling pathways, one mediated by Numb and the other by Notch, play essential but antagonistic roles in enabling the two daughters to adopt different fates after a wide variety of asymmetric cell divisions []. Numb acts to inhibit Notch signalling, this inhibition being critical for many cell fate decisions []. Mammalian Numb (mNumb) has multiple functions and plays important roles in the regulation of neural development, including maintenance of neural progenitor cells and promotion of neuronal differentiation in the central nervous system (CNS) [].
Probab=49.53 E-value=5 Score=32.25 Aligned_cols=23 Identities=30% Similarity=0.249 Sum_probs=18.1
Q ss_pred cccccccccccccccCccccccc
Q 037676 10 AEQAATLTRQNSFSIPILLCKKT 32 (267)
Q Consensus 10 ~~~~~~LqRQgSlTLpr~Ls~KT 32 (267)
.+...-|+|||||-....|+++|
T Consensus 9 hA~~~~L~RQgS~R~f~~l~~~~ 31 (88)
T PF06311_consen 9 HAPPSMLERQGSFRGFPKLSQQT 31 (88)
T ss_pred CCCHHHHHhhhcccccccccccC
Confidence 34444599999999999999883
No 83
>PRK04325 hypothetical protein; Provisional
Probab=49.37 E-value=87 Score=23.92 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAEND 239 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~ 239 (267)
.+.+||.++..++.-..
T Consensus 10 Ri~~LE~klAfQE~tIe 26 (74)
T PRK04325 10 RITELEIQLAFQEDLID 26 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37888888866443333
No 84
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=48.99 E-value=2e+02 Score=25.76 Aligned_cols=53 Identities=9% Similarity=0.152 Sum_probs=34.8
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVK 246 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~ 246 (267)
++-+..+.|+..+.++=+.|...|..=++++.+.+.++...+.|-..+.....
T Consensus 72 Pi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~ 124 (205)
T PRK06231 72 PTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQAN 124 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777777777777777777665555555544433
No 85
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=48.88 E-value=66 Score=24.89 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
+..++.+...|+.||..|+-+++.|..
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 788888999999999999988887753
No 86
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=48.35 E-value=20 Score=28.73 Aligned_cols=28 Identities=43% Similarity=0.620 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
.|++.|...+..|..+|..|+.++.+|.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~ 52 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQ 52 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777666553
No 87
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.32 E-value=1e+02 Score=33.93 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037676 235 KAENDKLKEAVKELERK 251 (267)
Q Consensus 235 ~~EN~~L~~~l~~L~~~ 251 (267)
+..+..|..+++.|..+
T Consensus 436 nak~~ql~~eletLn~k 452 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFK 452 (1118)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 88
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.30 E-value=1.1e+02 Score=32.97 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=6.5
Q ss_pred CcchHHHHHhhhc
Q 037676 62 GEITLEEFLVKAG 74 (267)
Q Consensus 62 GEMTLEdFLVrAG 74 (267)
--+++.-++...|
T Consensus 340 K~i~~~~l~aq~G 352 (771)
T TIGR01069 340 KTLGLLALMFQSG 352 (771)
T ss_pred HHHHHHHHHHHhC
Confidence 3344444555555
No 89
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=48.06 E-value=65 Score=24.45 Aligned_cols=37 Identities=27% Similarity=0.474 Sum_probs=18.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 203 QRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVK 246 (267)
Q Consensus 203 qrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~ 246 (267)
.+++.+-|.+|.++=.-+-.-+ ..|+.||..|+++++
T Consensus 28 ~k~L~~ERd~~~~~l~~a~~e~-------~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 28 NKRLRRERDSAERQLGDAYEEN-------NKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3445555666655544433333 444455555555443
No 90
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=47.77 E-value=1.2e+02 Score=27.46 Aligned_cols=48 Identities=25% Similarity=0.412 Sum_probs=37.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 206 MIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRV 253 (267)
Q Consensus 206 ~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k 253 (267)
+++-|.++..-|.+=+.|...||.+=..|+....-.+++|..|+++..
T Consensus 118 i~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~ 165 (187)
T PF05300_consen 118 ILRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNA 165 (187)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677777889999999888999999999999998877643
No 91
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=47.57 E-value=1e+02 Score=22.16 Aligned_cols=55 Identities=29% Similarity=0.339 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 197 VVVERRQRRMIKNRESAARSRARKQ---AYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 197 ~~~erRqrR~ikNReSA~rSR~RKk---~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+...|+.+=.+.-|.+-.|-...=. ..+..|+.+...|..++..|..++..|...
T Consensus 5 k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 5 KRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666666666555443 456788889999999999999999888654
No 92
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.35 E-value=1.1e+02 Score=26.55 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
+|+.++...+.+.+.|++|.+.+
T Consensus 165 ~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 165 KLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444333
No 93
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=46.96 E-value=1.9e+02 Score=24.86 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=33.5
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKE 243 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~ 243 (267)
++.+..+.|+.++.+.=..|...+..-.+...+.+.++...+.|-..+..
T Consensus 40 pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~ 89 (173)
T PRK13460 40 VILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVA 89 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888877778777777777777777766655554444443
No 94
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=46.79 E-value=42 Score=28.18 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=19.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 201 RRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLK 242 (267)
Q Consensus 201 rRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~ 242 (267)
.|..|..++||.+ .++.+++||.++..|+.+.+.++
T Consensus 97 ~Rs~~ke~~Ke~~------~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 97 WRSARKEAKKEEE------LQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444433 23456667777776666665554
No 95
>PRK00736 hypothetical protein; Provisional
Probab=46.64 E-value=1.1e+02 Score=23.09 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKA 236 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~ 236 (267)
+.+.+||.++..++.
T Consensus 5 ~Ri~~LE~klafqe~ 19 (68)
T PRK00736 5 ERLTELEIRVAEQEK 19 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 347888888865433
No 96
>KOG2829 consensus E2F-like protein [Transcription]
Probab=46.57 E-value=45 Score=32.40 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 195 HEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLK 235 (267)
Q Consensus 195 ~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~ 235 (267)
+++.++.|.|||.+ -++|++|+.||..++..++
T Consensus 134 v~~le~Er~k~~er--------I~kK~a~lqEl~~q~~~fk 166 (326)
T KOG2829|consen 134 VSELEEERKKRMER--------IKKKAAQLQELIEQVSAFK 166 (326)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 45555666666643 3789999999999987654
No 97
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=46.53 E-value=45 Score=26.21 Aligned_cols=33 Identities=36% Similarity=0.418 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERKRVQE 255 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~ 255 (267)
-.++|-.++..|+.+...|..++.+++.+....
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777776666655443
No 98
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=45.81 E-value=2.4e+02 Score=25.70 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 195 HEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKE 243 (267)
Q Consensus 195 ~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~ 243 (267)
+-...++|+.++...-..|.+.+..=.+...+.+.++...+.+-..+..
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~ 78 (246)
T TIGR03321 30 ILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLT 78 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777776677666665555555555555554444444433
No 99
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=45.67 E-value=18 Score=26.11 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKE 243 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~ 243 (267)
.+.|||.+|..|++-|..|-.
T Consensus 19 rv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 19 RVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred eHHHHHHHHHHHHHHhHHHHh
Confidence 466888888888888877754
No 100
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=45.21 E-value=10 Score=29.60 Aligned_cols=12 Identities=50% Similarity=0.714 Sum_probs=10.4
Q ss_pred CcchHHHHHhhh
Q 037676 62 GEITLEEFLVKA 73 (267)
Q Consensus 62 GEMTLEdFLVrA 73 (267)
|=||||+||.|-
T Consensus 55 GW~tL~~fL~kh 66 (73)
T smart00243 55 GWETLDEYLLKH 66 (73)
T ss_pred cHHHHHHHHHhC
Confidence 669999999985
No 101
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=44.64 E-value=2.1e+02 Score=24.72 Aligned_cols=51 Identities=25% Similarity=0.282 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 199 VERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 199 ~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
.+|-......|++.|-.--.-+++.+..|+.++..+..+...|...+..+.
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666778888888888888899999999888776666666666655554
No 102
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=44.24 E-value=68 Score=23.28 Aligned_cols=21 Identities=38% Similarity=0.373 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKL 241 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L 241 (267)
+.-++.|..+...|+.+...|
T Consensus 30 ~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 30 QKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555
No 103
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.20 E-value=45 Score=35.27 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
..|+..|..|++||..|+..+.++
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~ 448 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEEL 448 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544444
No 104
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=44.16 E-value=48 Score=32.90 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 217 RARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQE 255 (267)
Q Consensus 217 R~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~ 255 (267)
=.|-|..+.-||.-+.+|++||..|+-++.++.+.+.+.
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ek 160 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEK 160 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHh
Confidence 356667778888889999999999999999998776443
No 105
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=44.14 E-value=38 Score=26.58 Aligned_cols=17 Identities=35% Similarity=0.708 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037676 232 TQLKAENDKLKEAVKEL 248 (267)
Q Consensus 232 ~~L~~EN~~L~~~l~~L 248 (267)
..|.+||.+|+++++.|
T Consensus 3 ~ei~eEn~~Lk~eiqkl 19 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKL 19 (76)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35667777777777733
No 106
>PLN02320 seryl-tRNA synthetase
Probab=44.01 E-value=95 Score=31.98 Aligned_cols=51 Identities=18% Similarity=0.034 Sum_probs=29.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 207 IKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDI 257 (267)
Q Consensus 207 ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~ 257 (267)
.+|..|.+-..++++.-.++|-.++..|+++...|..++.+++++..+.++
T Consensus 115 ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 115 ERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred HHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443332333345566667777777777777777777766665443
No 107
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=43.89 E-value=1.6e+02 Score=24.24 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=21.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 037676 205 RMIKNRESAARSRARKQAYTVELEL--ELTQLKAENDKLKEAVK 246 (267)
Q Consensus 205 R~ikNReSA~rSR~RKk~y~~eLE~--~v~~L~~EN~~L~~~l~ 246 (267)
=|-.||.+++..++-...|-..|.. ++..|-++...|..++.
T Consensus 54 lmsQNRq~~~dr~ra~~D~~inl~ae~ei~~l~~~l~~l~~~~~ 97 (108)
T PF06210_consen 54 LMSQNRQAARDRLRAELDYQINLKAEQEIERLHRKLDALREKLG 97 (108)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 3556777776555555556555543 23344444444444433
No 108
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=42.70 E-value=80 Score=28.54 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 219 RKQAYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 219 RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
..+..+++|..++..|+.+..++++.+.+|-
T Consensus 103 ~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 103 KRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777777777664
No 109
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=42.09 E-value=1.8e+02 Score=24.05 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037676 230 ELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 230 ~v~~L~~EN~~L~~~l~~L 248 (267)
+-..|+.+...++.++.+|
T Consensus 99 qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555
No 110
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=42.00 E-value=85 Score=26.52 Aligned_cols=28 Identities=32% Similarity=0.573 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.+.||.++..|+..-..|..++++|..+
T Consensus 79 ~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 79 KETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444
No 111
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=41.87 E-value=2.2e+02 Score=24.30 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=38.7
Q ss_pred CChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 193 GPHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAV 245 (267)
Q Consensus 193 ~~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l 245 (267)
.++-...++|+.++.+.=+.|.+.|..=.++..+.+.++...+.+-..+..+-
T Consensus 33 ~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A 85 (167)
T PRK14475 33 KALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAA 85 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888888888888888888877776655555554443
No 112
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=41.77 E-value=1.6e+02 Score=26.31 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 210 RESAARSRARKQAYTVELELELT 232 (267)
Q Consensus 210 ReSA~rSR~RKk~y~~eLE~~v~ 232 (267)
.-|-+..+.+...+...||.++.
T Consensus 98 LL~lk~~~~~~~e~~k~le~~~~ 120 (190)
T PF05266_consen 98 LLSLKDDQEKLLEERKKLEKKIE 120 (190)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 113
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=41.58 E-value=1e+02 Score=23.53 Aligned_cols=27 Identities=37% Similarity=0.417 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
.+..|+.++..|+.+...|..++..+.
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~ 89 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLE 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 114
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=41.52 E-value=87 Score=26.44 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037676 230 ELTQLKAENDKLKEAVKELERKRVQEDIQATE 261 (267)
Q Consensus 230 ~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~~ 261 (267)
++..|++||....+++.+..++ ++++++++.
T Consensus 105 ~i~~L~~E~~~~~~el~~~v~e-~e~ll~~v~ 135 (144)
T PF11221_consen 105 RIKELEEENEEAEEELQEAVKE-AEELLKQVQ 135 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4556666666666665554333 444554443
No 115
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.48 E-value=48 Score=33.93 Aligned_cols=9 Identities=67% Similarity=0.970 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 037676 233 QLKAENDKL 241 (267)
Q Consensus 233 ~L~~EN~~L 241 (267)
.|++||++|
T Consensus 84 ~l~~eN~~L 92 (472)
T TIGR03752 84 ALKAENERL 92 (472)
T ss_pred HHHHHHHHH
Confidence 333333333
No 116
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=41.44 E-value=59 Score=35.13 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 210 RESAARSRARKQAYTVELELELTQLKA 236 (267)
Q Consensus 210 ReSA~rSR~RKk~y~~eLE~~v~~L~~ 236 (267)
=+=|..|+..||+|++||.-++.-|..
T Consensus 419 sq~~kl~k~q~k~y~de~dyr~kl~~k 445 (763)
T TIGR00993 419 AQMAKLSKEQRKAYLEEYDYRVKLLQK 445 (763)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 355778899999999999988875543
No 117
>PRK10963 hypothetical protein; Provisional
Probab=41.34 E-value=69 Score=28.88 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=15.1
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQ---LKAENDKLKEAVKELE 249 (267)
Q Consensus 225 ~eLE~~v~~---L~~EN~~L~~~l~~L~ 249 (267)
..||.++.. .-.+|..+-.++..+.
T Consensus 54 ~~Le~~l~~Li~~A~~Ne~l~~~~~~l~ 81 (223)
T PRK10963 54 HVLEEEMTLLMEQAIANEDLFYRLLPLQ 81 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555544 3567777777766664
No 118
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=41.01 E-value=2.1e+02 Score=29.28 Aligned_cols=27 Identities=41% Similarity=0.460 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVKE 247 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~~ 247 (267)
++.+.++|.++..|++||..|..+.-.
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999888776544
No 119
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=40.90 E-value=71 Score=26.98 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQATE 261 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~~ 261 (267)
+.++-|..++..|++.|..|+++..-|+....++.+..+.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~ 106 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLP 106 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4566677777888888888888877777666666665543
No 120
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=40.87 E-value=1.5e+02 Score=29.40 Aligned_cols=34 Identities=32% Similarity=0.377 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERKRVQEDI 257 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~ 257 (267)
.++|-.++..|+++...|..++.+++++....++
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777778888888888888887777666543
No 121
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=40.38 E-value=29 Score=29.11 Aligned_cols=27 Identities=37% Similarity=0.368 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVKE 247 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~~ 247 (267)
|+++.+|-.+...|.-||..|++++.+
T Consensus 28 K~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 28 KQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 445677777778888888888888877
No 122
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=40.18 E-value=1e+02 Score=30.60 Aligned_cols=33 Identities=27% Similarity=0.246 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERKRVQED 256 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~ 256 (267)
.++|-.++..|+++...|..++.+++++..+.+
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777777777776666544
No 123
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=40.12 E-value=1.2e+02 Score=24.13 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQATE 261 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~~ 261 (267)
..+..|..-+..|++.|..|..+|.+|.+-.++.-.+.-+
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777778888888888888888887776666555433
No 124
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=40.09 E-value=2.2e+02 Score=29.95 Aligned_cols=19 Identities=37% Similarity=0.449 Sum_probs=9.2
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 037676 204 RRMIKNRESAARSRARKQA 222 (267)
Q Consensus 204 rR~ikNReSA~rSR~RKk~ 222 (267)
++-.+-|+-|.|+|++-++
T Consensus 217 ~~~e~kr~Eaerk~~~~qE 235 (591)
T KOG2412|consen 217 ERSEEKREEAERKRRAHQE 235 (591)
T ss_pred HHHHhhhhhhHHHHHHHHH
Confidence 3444445555555554443
No 125
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=40.07 E-value=1.5e+02 Score=25.82 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037676 215 RSRARKQAYTVELELELTQL 234 (267)
Q Consensus 215 rSR~RKk~y~~eLE~~v~~L 234 (267)
.+-++|++|+.+|..+...|
T Consensus 15 ~rI~~K~~~LqEL~~Q~va~ 34 (142)
T PF08781_consen 15 ERIKKKKEQLQELILQQVAF 34 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34477999999999876544
No 126
>PRK02793 phi X174 lysis protein; Provisional
Probab=39.93 E-value=1.5e+02 Score=22.48 Aligned_cols=15 Identities=33% Similarity=0.217 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKA 236 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~ 236 (267)
+.+.+||.++..++.
T Consensus 8 ~Ri~~LE~~lafQe~ 22 (72)
T PRK02793 8 ARLAELESRLAFQEI 22 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777765433
No 127
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=39.75 E-value=14 Score=27.74 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERKRVQEDIQA 259 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~ 259 (267)
++-|-.++..|++.|..|+.+..-|......+.++.
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe~l~q 51 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQNASPEQLAQ 51 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 456667777777777777777666655444333333
No 128
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.69 E-value=1.3e+02 Score=32.08 Aligned_cols=26 Identities=38% Similarity=0.544 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
.+||.++.+|+.|.....+++..++.
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677776666665555555555544
No 129
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=38.39 E-value=45 Score=33.07 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 218 ARKQAYTVELELELTQLKAENDKLKE 243 (267)
Q Consensus 218 ~RKk~y~~eLE~~v~~L~~EN~~L~~ 243 (267)
.+||+|+..||.+|..|..|...|-+
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999888777655
No 130
>PRK00295 hypothetical protein; Provisional
Probab=38.38 E-value=1.7e+02 Score=21.96 Aligned_cols=13 Identities=23% Similarity=0.079 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLK 235 (267)
Q Consensus 223 y~~eLE~~v~~L~ 235 (267)
.+.+||.++..++
T Consensus 6 Ri~~LE~kla~qE 18 (68)
T PRK00295 6 RVTELESRQAFQD 18 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3777888776544
No 131
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=38.24 E-value=2.8e+02 Score=24.75 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQATED 262 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~~~ 262 (267)
++.+.|...+..+..++.+|..++.+|.-..-...++.+++
T Consensus 78 ~~~~~l~d~inE~t~k~~El~~~i~el~~~~~Ks~~~~l~q 118 (165)
T PF09602_consen 78 ATGNSLNDSINEWTDKLNELSAKIQELLLSPSKSSFSLLSQ 118 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHH
Confidence 68888888888999999999888888765555555444443
No 132
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=38.15 E-value=2.8e+02 Score=24.33 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=24.0
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELT 232 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~ 232 (267)
++....+.|+.++..+-..|.+.+..=.+...+.|.++.
T Consensus 34 pI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~ 72 (155)
T PRK06569 34 KAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEID 72 (155)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566677777777777777766665555444444443
No 133
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=38.13 E-value=1.3e+02 Score=24.14 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 231 LTQLKAENDKLKEAVKELERKRV 253 (267)
Q Consensus 231 v~~L~~EN~~L~~~l~~L~~~~k 253 (267)
...|.+||+.|+.+.+..+...|
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvk 54 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVK 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444443333
No 134
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=37.93 E-value=66 Score=27.01 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 216 SRARKQAYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 216 SR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
|+++.+..-+.++.++..|+.+..+|..+++.++
T Consensus 99 s~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 99 SARKEAKKEEELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444666777788888888887776654
No 135
>PRK11239 hypothetical protein; Provisional
Probab=37.20 E-value=60 Score=30.04 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
...||.+|..|+.|...|+.++++|..
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999999999888765
No 136
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=37.15 E-value=2.5e+02 Score=23.50 Aligned_cols=60 Identities=25% Similarity=0.307 Sum_probs=31.9
Q ss_pred hHHHHHHHHHH--HhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 037676 197 VVVERRQRRMI--KNR-ESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELE--RKRVQEDIQA 259 (267)
Q Consensus 197 ~~~erRqrR~i--kNR-eSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~--~~~k~~~~e~ 259 (267)
+.+++.+-|=| +|+ .|....|.+++..+.. .+...+.|.++|+.++..|. +.-.+++|++
T Consensus 55 ~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~---~I~Ek~~eLERl~~E~~sL~kve~eQ~~~i~~ 119 (120)
T PF14931_consen 55 KRVENEKLKAIGARNLLKSEAKQREAQQQQLQA---LIAEKKMELERLRSEYESLQKVEQEQNELIQK 119 (120)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444 444 3445566666665444 44455556666666666654 3334455554
No 137
>COG5562 Phage envelope protein [General function prediction only]
Probab=37.03 E-value=16 Score=31.60 Aligned_cols=18 Identities=50% Similarity=0.715 Sum_probs=15.0
Q ss_pred CCcchHHHH---HhhhcccCC
Q 037676 61 FGEITLEEF---LVKAGVVQE 78 (267)
Q Consensus 61 LGEMTLEdF---LVrAGVVrE 78 (267)
=||.|+|+| |.+|||.|=
T Consensus 86 sGqttF~ef~~~la~AGVfrw 106 (137)
T COG5562 86 SGQTTFEEFCSALAEAGVFRW 106 (137)
T ss_pred cCCccHHHHHHHHHhCCeEEE
Confidence 389999999 579999873
No 138
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=36.84 E-value=2.3e+02 Score=23.64 Aligned_cols=43 Identities=19% Similarity=0.399 Sum_probs=25.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 202 RQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 202 RqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
..+|-.+||||-++ |+.++-..-..-.-|...|.-++.+.+.+
T Consensus 56 E~~~q~r~rES~~E----r~K~~~s~~~~q~Lm~rQN~mm~~qqqsi 98 (121)
T PF10669_consen 56 EEKRQKRNRESKRE----RQKFIWSMNKQQSLMNRQNNMMKQQQQSI 98 (121)
T ss_pred HHHHHHHhhhhHHH----HHhHHhhhhHHHHHHHHHhHHHHHHHHhH
Confidence 34566778887543 45555555444444666676666655444
No 139
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=36.77 E-value=3.1e+02 Score=24.50 Aligned_cols=19 Identities=11% Similarity=0.214 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLK 242 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~ 242 (267)
+..|..++..+++++..++
T Consensus 72 ~~~l~~~i~~~~~~i~~~r 90 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKR 90 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 140
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=36.72 E-value=2.8e+02 Score=25.67 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVKELERKRVQE 255 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~ 255 (267)
..-+..+..++..|+.++..+..++..+......+
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E 168 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCE 168 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555566666666666666666655544443
No 141
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=36.60 E-value=1.5e+02 Score=27.18 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=40.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037676 202 RQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQATED 262 (267)
Q Consensus 202 RqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~~~ 262 (267)
+..++-.--|.+...|....+..++|+.++..|+.+.+.|+-++..+++ .+.++.+.+..
T Consensus 96 k~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e-~dpqv~~k~~~ 155 (203)
T KOG3433|consen 96 KKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQE-TDPQVFEKKVH 155 (203)
T ss_pred hHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCHHHHHHHHH
Confidence 3344444455566777777788888888888888888888888777643 35555554443
No 142
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=36.18 E-value=2.4e+02 Score=23.11 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=32.7
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKE 243 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~ 243 (267)
++-+..+.|+.++.++=+.|...+..=.....+.+.++...+.+-..+..
T Consensus 19 pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~ 68 (147)
T TIGR01144 19 PLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIE 68 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777777777766665555444443
No 143
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=36.14 E-value=68 Score=30.14 Aligned_cols=10 Identities=60% Similarity=0.816 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 037676 234 LKAENDKLKE 243 (267)
Q Consensus 234 L~~EN~~L~~ 243 (267)
|++||++|++
T Consensus 96 l~~EN~rLr~ 105 (283)
T TIGR00219 96 LKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHH
Confidence 4445544444
No 144
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=36.09 E-value=1.5e+02 Score=30.55 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAV 245 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l 245 (267)
..++|++++.|+.||..|+.++
T Consensus 99 ~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 99 RGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3355666666666666666655
No 145
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=36.09 E-value=65 Score=30.60 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.-+..|+.++..|++||.+|+.++++++.+
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~ 61 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDALQAQ 61 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777544
No 146
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=36.06 E-value=2.9e+02 Score=25.01 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.|...|+..+..++.+...|.+++.+++..
T Consensus 70 ~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 70 VYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555554433
No 147
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=35.99 E-value=20 Score=26.95 Aligned_cols=17 Identities=41% Similarity=0.440 Sum_probs=14.9
Q ss_pred CCCCcchHHHHHhhhcc
Q 037676 59 PTFGEITLEEFLVKAGV 75 (267)
Q Consensus 59 ~TLGEMTLEdFLVrAGV 75 (267)
..|=.||.|||+.||+.
T Consensus 38 k~LC~ms~edF~~~~p~ 54 (68)
T cd08757 38 QTLCSMTEEEFREAAGS 54 (68)
T ss_pred HHHHcCCHHHHHHHcCC
Confidence 46888999999999975
No 148
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=35.83 E-value=20 Score=27.61 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.4
Q ss_pred CCCCcchHHHHHhhhccc
Q 037676 59 PTFGEITLEEFLVKAGVV 76 (267)
Q Consensus 59 ~TLGEMTLEdFLVrAGVV 76 (267)
..|=.||.|||+.+|+-.
T Consensus 40 k~LC~lt~edF~~~~~~~ 57 (75)
T cd08531 40 KELCKMTKEDFLRLTSAY 57 (75)
T ss_pred HHHHcCCHHHHHHHcCCC
Confidence 357789999999998543
No 149
>PRK04406 hypothetical protein; Provisional
Probab=35.78 E-value=1.9e+02 Score=22.25 Aligned_cols=14 Identities=21% Similarity=0.181 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLK 235 (267)
Q Consensus 222 ~y~~eLE~~v~~L~ 235 (267)
+.+.+||.++..++
T Consensus 11 ~Ri~~LE~~lAfQE 24 (75)
T PRK04406 11 ERINDLECQLAFQE 24 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 35666666665543
No 150
>PRK02119 hypothetical protein; Provisional
Probab=35.48 E-value=1.9e+02 Score=21.98 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLK 235 (267)
Q Consensus 222 ~y~~eLE~~v~~L~ 235 (267)
+.+.+||.++..++
T Consensus 9 ~Ri~~LE~rla~QE 22 (73)
T PRK02119 9 NRIAELEMKIAFQE 22 (73)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777776543
No 151
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=35.38 E-value=19 Score=27.56 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.5
Q ss_pred CCCcchHHHHHhhhcc
Q 037676 60 TFGEITLEEFLVKAGV 75 (267)
Q Consensus 60 TLGEMTLEdFLVrAGV 75 (267)
-|=.||.|||+.+|+-
T Consensus 39 ~LC~ls~edF~~~~p~ 54 (71)
T cd08533 39 DLCALGKERFLELAPD 54 (71)
T ss_pred HHHcCCHHHHHHHcCC
Confidence 4668999999999964
No 152
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=35.37 E-value=2.9e+02 Score=23.82 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 195 HEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKE 243 (267)
Q Consensus 195 ~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~ 243 (267)
+-...++|+.++.+.-+.|.+.+..=.+.+.+.+.++..-+.+-..+..
T Consensus 52 v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~ 100 (184)
T PRK13455 52 IGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVA 100 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777776666666666666555444444443
No 153
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=34.92 E-value=19 Score=27.65 Aligned_cols=27 Identities=26% Similarity=0.710 Sum_probs=18.7
Q ss_pred cccHHHHHHHHHhccCCCcCCCCCCCCCCCCCCcchHHHHHhh
Q 037676 30 KKTVEEVWSEIQKDQQPQRRCHVEPPQRQPTFGEITLEEFLVK 72 (267)
Q Consensus 30 ~KTVDEVWrdI~~~~~~~~~~~~~~~~RQ~TLGEMTLEdFLVr 72 (267)
..-|+++|+++..+ -=|.+|++||+.-
T Consensus 50 ~~~v~~i~~~~D~d----------------~dG~I~f~eF~~~ 76 (88)
T cd05030 50 QKAIDKIFEDLDTN----------------QDGQLSFEEFLVL 76 (88)
T ss_pred HHHHHHHHHHcCCC----------------CCCcCcHHHHHHH
Confidence 67777888776322 1378999999853
No 154
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=34.53 E-value=86 Score=30.42 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
..++.|..|+..|++||..|+.+...|.
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666666666666555443
No 155
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=34.49 E-value=3.6e+02 Score=28.26 Aligned_cols=48 Identities=27% Similarity=0.362 Sum_probs=26.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 201 RRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 201 rRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
+....+++-..........-+..+..|+.++...++++..|+.+.+++
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel 197 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKEL 197 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666666666665566666666666555555555555444433
No 156
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=34.35 E-value=1.6e+02 Score=23.38 Aligned_cols=17 Identities=29% Similarity=0.644 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037676 228 ELELTQLKAENDKLKEA 244 (267)
Q Consensus 228 E~~v~~L~~EN~~L~~~ 244 (267)
..+|..|+++|..|..+
T Consensus 24 qmEieELKekn~~L~~e 40 (79)
T PRK15422 24 QMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 157
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=34.09 E-value=74 Score=25.77 Aligned_cols=23 Identities=43% Similarity=0.429 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVK 246 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~ 246 (267)
+.+|+.++.+|+.||.-|++...
T Consensus 80 i~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888887777543
No 158
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=34.03 E-value=3.2e+02 Score=23.78 Aligned_cols=55 Identities=7% Similarity=0.061 Sum_probs=38.3
Q ss_pred CChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 193 GPHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKE 247 (267)
Q Consensus 193 ~~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~ 247 (267)
+++-...+.|+.++...=+.|.+.|..=.....+.+.++..-+.|-..+..+-.+
T Consensus 27 kPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~ 81 (154)
T PRK06568 27 KAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNE 81 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667778888888888888888888888888887776655555554443333
No 159
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=33.93 E-value=3.3e+02 Score=23.94 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 196 EVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 196 e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
....++..+++|+.|..|.-==++|-+-..+|..++...++....+.+.+.+|..
T Consensus 79 ~~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas 133 (152)
T PF11500_consen 79 HEKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELAS 133 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777788888877766555566677788888777766666667666666543
No 160
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=33.93 E-value=2.6e+02 Score=22.75 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 195 HEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKE 243 (267)
Q Consensus 195 ~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~ 243 (267)
+-...+.|+.++..+=+.|...+..=.+...+.+.++...+.+-..+..
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~ 78 (140)
T PRK07353 30 VGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIA 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666655555666666555554444444433
No 161
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=33.60 E-value=2.9e+02 Score=23.14 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=25.3
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLK 235 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~ 235 (267)
++-+..+.|+.++...-+.|.+.+..=.+...+.+..+..-+
T Consensus 31 Pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar 72 (141)
T PRK08476 31 PLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAR 72 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677777777777777666655555555555544433
No 162
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=33.57 E-value=66 Score=23.76 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037676 227 LELELTQLKAENDKLKEAVK 246 (267)
Q Consensus 227 LE~~v~~L~~EN~~L~~~l~ 246 (267)
|..++..|+++|.+|+.-++
T Consensus 38 l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 38 LIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666655443
No 163
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=33.47 E-value=1.5e+02 Score=25.27 Aligned_cols=28 Identities=39% Similarity=0.456 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 218 ARKQAYTVELELELTQLKAENDKLKEAV 245 (267)
Q Consensus 218 ~RKk~y~~eLE~~v~~L~~EN~~L~~~l 245 (267)
..--.++-.|..+...|++||..|+.++
T Consensus 92 ~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 92 LQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3344567788888888999998888765
No 164
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.09 E-value=1.9e+02 Score=22.77 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVK 246 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~ 246 (267)
.-|..++..|+++|..|..+..
T Consensus 21 ~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 21 TLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHhhHhHHHHH
Confidence 3344455555555555544443
No 165
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.67 E-value=1.5e+02 Score=25.14 Aligned_cols=44 Identities=23% Similarity=0.190 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhh
Q 037676 219 RKQAYTVELELELTQLKAENDKLKEAVKELERKR---VQEDIQATED 262 (267)
Q Consensus 219 RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~---k~~~~e~~~~ 262 (267)
.|..-+.+|+.++..|+.+...|.++.+.+.++. +.+|...+.+
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4666778899999999999899988877776543 3344444444
No 166
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=32.60 E-value=23 Score=26.24 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.7
Q ss_pred CCCCcchHHHHHhhhcc
Q 037676 59 PTFGEITLEEFLVKAGV 75 (267)
Q Consensus 59 ~TLGEMTLEdFLVrAGV 75 (267)
..|=.||.|||+.|++.
T Consensus 36 ~~Lc~ls~edF~~~~p~ 52 (66)
T cd08203 36 KELCLLTKEDFLRRAPS 52 (66)
T ss_pred HHHHhCCHHHHHHHcCC
Confidence 46778999999999975
No 167
>PHA02562 46 endonuclease subunit; Provisional
Probab=32.59 E-value=3.2e+02 Score=27.11 Aligned_cols=22 Identities=23% Similarity=0.290 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037676 227 LELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 227 LE~~v~~L~~EN~~L~~~l~~L 248 (267)
|+.++..|+.++..+..++.++
T Consensus 363 l~~ei~~l~~~~~~~~~~l~~l 384 (562)
T PHA02562 363 VKAAIEELQAEFVDNAEELAKL 384 (562)
T ss_pred HHHHHHHHHhhhhchHHHHHHH
Confidence 3333333433333333333333
No 168
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=32.57 E-value=25 Score=27.22 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=14.0
Q ss_pred CCCcchHHHHHhhhccc
Q 037676 60 TFGEITLEEFLVKAGVV 76 (267)
Q Consensus 60 TLGEMTLEdFLVrAGVV 76 (267)
-|=.||.|||+.+|+-.
T Consensus 41 ~LC~LskedF~~~ap~~ 57 (75)
T cd08540 41 ELCKMTKDDFQRLTPSY 57 (75)
T ss_pred HHHhCCHHHHHHHcCCC
Confidence 46689999999999653
No 169
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=32.42 E-value=3.2e+02 Score=23.39 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=35.0
Q ss_pred CChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 193 GPHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAEND 239 (267)
Q Consensus 193 ~~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~ 239 (267)
.++.+..+.|+.+...+-..|.+.+.-=+++..+.+.++...+.+-.
T Consensus 29 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~ 75 (161)
T COG0711 29 KPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQAS 75 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888888888888877777777765544433
No 170
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=32.36 E-value=99 Score=32.26 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 228 ELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 228 E~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
-.+|..|+.+|..|...+..|+..+
T Consensus 55 IekVR~LEaqN~~L~~di~~lr~~~ 79 (546)
T KOG0977|consen 55 IEKVRFLEAQNRKLEHDINLLRGVV 79 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3477889999999999998887554
No 171
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=32.00 E-value=2e+02 Score=26.07 Aligned_cols=40 Identities=23% Similarity=0.363 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 212 SAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 212 SA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
-+-..+.++-+-+.++|.++...+.+.+.++.++..|.+.
T Consensus 152 ~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 152 LELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333455567777788888888888888888887777654
No 172
>PLN00040 Protein MAK16 homolog; Provisional
Probab=31.88 E-value=1.8e+02 Score=27.17 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 037676 198 VVERRQRRMIKNRESAARSRARKQ---AYTVELELELTQ--LKAENDKLKEAVKELERKRVQEDIQATEDGKKE 266 (267)
Q Consensus 198 ~~erRqrR~ikNReSA~rSR~RKk---~y~~eLE~~v~~--L~~EN~~L~~~l~~L~~~~k~~~~e~~~~~~~~ 266 (267)
..+|=..|+.|=.+-.-|.|+-+. .++.-+-.++.. ...|...|. -+.|+....++||+||.+|--.
T Consensus 104 ~ihk~KqRltkl~q~lir~rkl~~~~~~~~~~~~~k~~rre~~re~Ka~~--aa~le~~Ie~ELl~RL~~G~Yg 175 (233)
T PLN00040 104 LVHKNKQRLTKMTQYLIRMRKLALKTREKIVTTPRKLLKRERRRESKAQK--AAQLEKSIEKELLERLKSGTYG 175 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccceecccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCC
Confidence 445666666666666655554432 333333333332 222323333 2567888899999999999654
No 173
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=31.79 E-value=1.5e+02 Score=26.69 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELERKRVQED 256 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~ 256 (267)
.|...||.-+..|+.+...+++++.++...+|..-
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q 170 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQ 170 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777788888888888777776666554
No 174
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=31.75 E-value=1.2e+02 Score=34.24 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 220 KQAYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 220 Kk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+...+++|+..+-.|++||..|..++..|...
T Consensus 528 ~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t 559 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEENAHLLKQIQSLKTT 559 (1195)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34556778888888999999999999998774
No 175
>PHA02109 hypothetical protein
Probab=31.43 E-value=1.5e+02 Score=27.19 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 219 RKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQA 259 (267)
Q Consensus 219 RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~ 259 (267)
-|-+.+-+|+.++..|..|...++.++..+.+..+..+-|.
T Consensus 190 ~~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~LSE~ 230 (233)
T PHA02109 190 DKLKQISELTIKLEALSDEACQVKHKILNLRAEVKRRLSED 230 (233)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677889999999999999999999999988888777664
No 176
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.42 E-value=1.2e+02 Score=31.29 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKE 243 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~ 243 (267)
-+.+||.++..|+.|.+.|.+
T Consensus 77 kasELEKqLaaLrqElq~~sa 97 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNK 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666655443333
No 177
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=31.22 E-value=4.2e+02 Score=24.32 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 219 RKQAYTVELELELTQLKAENDKLKEAVKELERKRVQ 254 (267)
Q Consensus 219 RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~ 254 (267)
+-+.-+..|+.++..|+..|..|..++.+++..+..
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence 344455677777777778888888877777654443
No 178
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=31.19 E-value=1.1e+02 Score=23.60 Aligned_cols=14 Identities=43% Similarity=0.498 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 037676 230 ELTQLKAENDKLKE 243 (267)
Q Consensus 230 ~v~~L~~EN~~L~~ 243 (267)
.+..|+.||=.|+-
T Consensus 8 ~i~~L~KENF~LKL 21 (75)
T PF07989_consen 8 QIDKLKKENFNLKL 21 (75)
T ss_pred HHHHHHHhhhhHHH
Confidence 33333333333333
No 179
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=31.10 E-value=1.5e+02 Score=27.03 Aligned_cols=11 Identities=64% Similarity=0.921 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 037676 233 QLKAENDKLKE 243 (267)
Q Consensus 233 ~L~~EN~~L~~ 243 (267)
.|++||.+|++
T Consensus 97 ~l~~en~~L~~ 107 (276)
T PRK13922 97 QLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 180
>PF15294 Leu_zip: Leucine zipper
Probab=31.02 E-value=1.1e+02 Score=29.26 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 220 KQAYTVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 220 Kk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
=+..+..||.+....-+|...|..+|.+|..
T Consensus 144 Lk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 144 LKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666677777777777655
No 181
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=30.90 E-value=2.7e+02 Score=21.94 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
-+..|-.+|...++||..|+.+.+-|.
T Consensus 31 sL~~L~~Rve~Vk~E~~kL~~EN~~Lq 57 (80)
T PF10224_consen 31 SLEALSDRVEEVKEENEKLESENEYLQ 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666554443
No 182
>PLN02678 seryl-tRNA synthetase
Probab=30.67 E-value=2.4e+02 Score=28.52 Aligned_cols=35 Identities=23% Similarity=0.125 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELERKRVQED 256 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~ 256 (267)
+-.++|-.++..|+++...|..++.+++++..+.+
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667778888888888888888777766544
No 183
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=30.58 E-value=87 Score=23.86 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
+.||+.++..|..|.++|+.++...
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKK 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5688999999999999988876543
No 184
>PRK11637 AmiB activator; Provisional
Probab=30.46 E-value=4.2e+02 Score=25.91 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 037676 218 ARKQAYTVELELEL 231 (267)
Q Consensus 218 ~RKk~y~~eLE~~v 231 (267)
..+++.+..|+.+.
T Consensus 215 ~e~~~~l~~L~~~~ 228 (428)
T PRK11637 215 NERKKTLTGLESSL 228 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444454433
No 185
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=30.01 E-value=1.5e+02 Score=26.43 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVKELERKRVQ 254 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~ 254 (267)
++++..|+.++..|+.+|..|+.++..+++.++.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~ 143 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRA 143 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888877766555443
No 186
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=29.76 E-value=1.1e+02 Score=25.37 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 037676 240 KLKEAVKELERKRVQEDIQATE 261 (267)
Q Consensus 240 ~L~~~l~~L~~~~k~~~~e~~~ 261 (267)
+|++++++|..+..+.+++.++
T Consensus 82 ~lqkRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 82 ELQKRLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHHHHHhCCHHHHHHHHHHhc
Confidence 6666666666666666665553
No 187
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.63 E-value=1.6e+02 Score=26.17 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 037676 233 QLKAENDKLKEAVKEL 248 (267)
Q Consensus 233 ~L~~EN~~L~~~l~~L 248 (267)
.|+.++..|+.+++.|
T Consensus 108 ~l~~e~~~l~~~~e~L 123 (161)
T TIGR02894 108 RLKNQNESLQKRNEEL 123 (161)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 188
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=29.55 E-value=1.9e+02 Score=29.43 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=29.0
Q ss_pred CChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 193 GPHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKA 236 (267)
Q Consensus 193 ~~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~ 236 (267)
|...+++.-|+|| |.|-+..-+||+++++.|+.....|..
T Consensus 74 G~I~iK~~lReKR----r~a~k~~~~RK~~~i~~l~~~~~~ld~ 113 (425)
T PF04599_consen 74 GSINIKEPLREKR----RKALKNTIKRKREEIENLEDCIKNLDV 113 (425)
T ss_pred CccchhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4455566666666 677778889999999999887765544
No 189
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=29.48 E-value=2.3e+02 Score=21.56 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037676 227 LELELTQLKAENDKLKEAVKELERKRVQEDIQATE 261 (267)
Q Consensus 227 LE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~~ 261 (267)
|-.++..+..|+..|..+++.. ..+-+.+|.++.
T Consensus 26 Lr~q~~~~~~ER~~L~ekne~A-r~rvEamI~RLk 59 (65)
T TIGR02449 26 LRAQEKTWREERAQLLEKNEQA-RQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhh
Confidence 3444455556666666654433 233445555554
No 190
>PF14989 CCDC32: Coiled-coil domain containing 32
Probab=29.02 E-value=66 Score=28.12 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAEN 238 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN 238 (267)
..|+..||.|+..|+..+
T Consensus 55 ~~YLasLE~KL~rik~~~ 72 (148)
T PF14989_consen 55 EVYLASLERKLKRIKGKN 72 (148)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 358888888888887777
No 191
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=28.86 E-value=3e+02 Score=21.89 Aligned_cols=31 Identities=39% Similarity=0.442 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERKRV 253 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k 253 (267)
-..+.+.++..|..+...|+..+..+++...
T Consensus 75 ~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 75 KKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666677777777777666665543
No 192
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.81 E-value=2e+02 Score=22.72 Aligned_cols=27 Identities=33% Similarity=0.620 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+.|+.++..|+..-..+..++.+++.+
T Consensus 73 e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 73 ETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444433
No 193
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=28.69 E-value=92 Score=29.39 Aligned_cols=25 Identities=36% Similarity=0.399 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVK 246 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~ 246 (267)
+-++.+..++..|++||.+|+.-+.
T Consensus 83 ~~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 83 AELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455666788889999999887553
No 194
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=28.67 E-value=2.7e+02 Score=27.07 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Q 037676 198 VVERRQRRMIKNRESAARSRARKQAYTVELELE--------------LTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 198 ~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~--------------v~~L~~EN~~L~~~l~~L~~~ 251 (267)
++..+...|+.+=+--..-|.-|+-.++.||+- +..|+.||..|......|+..
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~ 82 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKT 82 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 344455555555555555666677777777653 345777777777766666544
No 195
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=28.55 E-value=57 Score=33.53 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
.+++|+.++.+|+++...|.+++...
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~ 57 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKV 57 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchh
Confidence 45555555555555555554444433
No 196
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.47 E-value=2e+02 Score=23.00 Aligned_cols=28 Identities=36% Similarity=0.605 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKEAVKELERKRV 253 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l~~L~~~~k 253 (267)
.+|.++..|+..-..|+.++.+++...+
T Consensus 78 ~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 78 TLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666655433
No 197
>PRK09343 prefoldin subunit beta; Provisional
Probab=28.40 E-value=3.3e+02 Score=22.37 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 229 LELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 229 ~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
.++..|+..-..|+.++.+++...
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666655443
No 198
>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=28.24 E-value=23 Score=38.48 Aligned_cols=59 Identities=25% Similarity=0.293 Sum_probs=39.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037676 201 RRQRRMIKNRESAARSRARKQAY----TVELEL-ELTQLKAENDKLKEAVKELERKRVQEDIQAT 260 (267)
Q Consensus 201 rRqrR~ikNReSA~rSR~RKk~y----~~eLE~-~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~ 260 (267)
.+.+++++|=..+..++..+.-- +.+.++ +...|+.||.+|++++.+.+++ -.++.+++
T Consensus 726 pKv~~l~t~p~~~se~q~n~~~~~ss~~~k~~eer~~~lk~EN~~l~~~i~ekee~-i~e~~~~l 789 (865)
T KOG1055|consen 726 PKLRHLITNPQWASEAQRNMKTGPSSSVNENEEERLRLLKKENRRLRKKIMEKEER-LSELKHQL 789 (865)
T ss_pred hhheeeecCchhhhhhhhccccCcccccchhHHHHhhhhhcccHHHHHhcccchHH-HHHHHHhc
Confidence 45566777777777776665554 555554 6788999999999998876544 33343433
No 199
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=27.97 E-value=2.3e+02 Score=22.43 Aligned_cols=10 Identities=30% Similarity=0.368 Sum_probs=2.7
Q ss_pred CCCCCCCCCC
Q 037676 185 GNRKRIIDGP 194 (267)
Q Consensus 185 rgrk~~~~~~ 194 (267)
.+|+..+.+.
T Consensus 29 ~~R~~~I~~~ 38 (132)
T PF00430_consen 29 DERKAKIQSE 38 (132)
T ss_dssp S--S-HHHHH
T ss_pred HHHHHHHHHH
Confidence 3454433333
No 200
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=27.83 E-value=1.7e+02 Score=27.49 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKEAV 245 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l 245 (267)
+|++|..+|++|+..|+.++
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~ 89 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQL 89 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554443333
No 201
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=27.65 E-value=27 Score=32.61 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=13.1
Q ss_pred cccccHHHHHHHHHhc
Q 037676 28 LCKKTVEEVWSEIQKD 43 (267)
Q Consensus 28 Ls~KTVDEVWrdI~~~ 43 (267)
||++-|+|||+++.-.
T Consensus 1 ls~~~v~evW~~~tl~ 16 (235)
T cd04405 1 LSPEVVEEIWKEQTLI 16 (235)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6788899999988654
No 202
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=27.62 E-value=2.3e+02 Score=27.03 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
+..||.++..++.+|.....+|..+.
T Consensus 167 l~~LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 167 LVVLEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 45556666566666655555555554
No 203
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=27.55 E-value=1.6e+02 Score=27.50 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 037676 218 ARKQAYTVELELEL-------TQLKAENDKLKEAVKELE 249 (267)
Q Consensus 218 ~RKk~y~~eLE~~v-------~~L~~EN~~L~~~l~~L~ 249 (267)
.|..+|+..|+.+. ..|+.||..|++++++|.
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788999888765 456666666766666655
No 204
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=27.46 E-value=3e+02 Score=24.37 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 196 EVVVERRQRRMIKNRESAARSRA--RKQAYTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 196 e~~~erRqrR~ikNReSA~rSR~--RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
+....+.+...++++..+...+. +++.-....+.++..|+..|..|+.+++.+
T Consensus 135 e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 135 EKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 205
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.41 E-value=5.5e+02 Score=24.50 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=35.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 200 ERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQE 255 (267)
Q Consensus 200 erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~ 255 (267)
+.....|..-=+.....+.-+++.+++++.++..|+.+...|+..+.+..+..+++
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~r 106 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556666666777777777777777777777777766655555444
No 206
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.34 E-value=2.1e+02 Score=22.49 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037676 232 TQLKAENDKLKEAVKELER 250 (267)
Q Consensus 232 ~~L~~EN~~L~~~l~~L~~ 250 (267)
..|+.||..|+.+.....+
T Consensus 49 eaL~~eneqlk~e~~~WQe 67 (79)
T COG3074 49 EALERENEQLKEEQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544433
No 207
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.33 E-value=3.7e+02 Score=22.47 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037676 235 KAENDKLKEAVKELERKRVQED 256 (267)
Q Consensus 235 ~~EN~~L~~~l~~L~~~~k~~~ 256 (267)
.+++.+|+..+.+++++++.++
T Consensus 95 ~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 95 SEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666665554
No 208
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=27.31 E-value=3.7e+02 Score=22.51 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=33.7
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKL 241 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L 241 (267)
++-...++|+.++..+-+.|...+..=.+...+.+.++...+.+-..+
T Consensus 26 pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~i 73 (159)
T PRK09173 26 MIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADI 73 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888888877777777777766554444433
No 209
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=26.96 E-value=32 Score=26.60 Aligned_cols=54 Identities=11% Similarity=-0.051 Sum_probs=32.5
Q ss_pred cccCcccccccHHHHHHHHHhccCCCc--CCCCCCCCCCCCCCcchHHHHHhhhcc
Q 037676 22 FSIPILLCKKTVEEVWSEIQKDQQPQR--RCHVEPPQRQPTFGEITLEEFLVKAGV 75 (267)
Q Consensus 22 lTLpr~Ls~KTVDEVWrdI~~~~~~~~--~~~~~~~~RQ~TLGEMTLEdFLVrAGV 75 (267)
|-||..=..=|.+.|+.=|+--..... ..-....---..|=.||.|||+.|++.
T Consensus 4 L~ip~DP~~Ws~~~V~~WL~w~~~ef~L~~~~~~F~mnG~~LC~ls~edF~~r~p~ 59 (76)
T cd08532 4 LGISPDPYQWSPANVQKWLLWTEHQYRLPPPPRCFELNGKDLCALSEEDFRRRAPQ 59 (76)
T ss_pred CCCCCChhhcCHHHHHHHHHHHHHHhCCCCchhcCCCCHHHHHcCCHHHHHHHcCC
Confidence 556777777788888876653211110 011111222346888999999999854
No 210
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=26.84 E-value=51 Score=32.35 Aligned_cols=29 Identities=31% Similarity=0.284 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 220 KQAYTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 220 Kk~y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
-.+|+.+||....+|--.|.+||+...+.
T Consensus 103 Ta~yI~~Le~~Kt~ll~qn~elKr~~~E~ 131 (373)
T KOG0561|consen 103 TADYIHQLEGHKTELLPQNGELKRLKLEE 131 (373)
T ss_pred HHHHHHHHHhcccccccccchHHHHHhhh
Confidence 45799999998888888888888876554
No 211
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=26.77 E-value=1.5e+02 Score=21.71 Aligned_cols=41 Identities=27% Similarity=0.371 Sum_probs=27.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 203 QRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKE 243 (267)
Q Consensus 203 qrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~ 243 (267)
.++|...||.-...|.--.+.+.+|+.+...|+.+...++.
T Consensus 10 e~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 10 ERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666555445555566777888888888887776653
No 212
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=26.73 E-value=1.9e+02 Score=26.95 Aligned_cols=35 Identities=34% Similarity=0.460 Sum_probs=25.8
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELE-LELTQLKAENDKLKEAVKELERKRVQED 256 (267)
Q Consensus 222 ~y~~eLE-~~v~~L~~EN~~L~~~l~~L~~~~k~~~ 256 (267)
.|+..+| .+...|..||+.|+..++.+......++
T Consensus 108 sel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei 143 (220)
T KOG3156|consen 108 SELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEI 143 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666 6788899999999999877655544444
No 213
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=26.65 E-value=2.8e+02 Score=22.54 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+..|+.++..+..++..|+..++.+.++
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 109 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEE 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554444433
No 214
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=26.49 E-value=1.6e+02 Score=25.47 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 230 ELTQLKAENDKLKEAVKELERKRVQED 256 (267)
Q Consensus 230 ~v~~L~~EN~~L~~~l~~L~~~~k~~~ 256 (267)
+...|+.++..|++++..|..+.++++
T Consensus 74 ~~~~lr~~~e~L~~eie~l~~~L~~ei 100 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKLRQELREEI 100 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666555553
No 215
>PTZ00464 SNF-7-like protein; Provisional
Probab=26.45 E-value=5e+02 Score=23.66 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037676 210 RESAARSRARKQAYTVELEL 229 (267)
Q Consensus 210 ReSA~rSR~RKk~y~~eLE~ 229 (267)
+..|.++=+|||-|-..|+.
T Consensus 60 K~~Al~~LK~KK~~E~ql~~ 79 (211)
T PTZ00464 60 KQRAMQLLQQKRMYQNQQDM 79 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666667766554443
No 216
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=25.92 E-value=1.6e+02 Score=23.79 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
..++.++..|+.++..|+.++.-|+.
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~diLKK 99 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENELLKE 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777776654443
No 217
>PRK09039 hypothetical protein; Validated
Probab=25.92 E-value=5.1e+02 Score=25.02 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
+..||..+..++++....+.+++.|.
T Consensus 153 la~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 153 LAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 218
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=25.80 E-value=1.8e+02 Score=23.85 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.++.+...|..+|..|+.+++.|...
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444455555555555555555433
No 219
>PRK10722 hypothetical protein; Provisional
Probab=25.73 E-value=3.1e+02 Score=25.99 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 216 SRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQE 255 (267)
Q Consensus 216 SR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~ 255 (267)
.|.|-+...++-+.++..|++.+.+|+.++....+|..+-
T Consensus 163 Er~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnL 202 (247)
T PRK10722 163 ERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENL 202 (247)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445557888888888888888888887775543
No 220
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.70 E-value=93 Score=28.50 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
.+||.+|+.|+.|-..|+.++..+.
T Consensus 188 ~dlearv~aLe~eva~L~~rld~ll 212 (215)
T COG3132 188 SDLEARVEALEQEVAELRARLDSLL 212 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3588899999999999988887764
No 221
>PRK04863 mukB cell division protein MukB; Provisional
Probab=25.57 E-value=3.8e+02 Score=31.33 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=45.9
Q ss_pred CChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 193 GPHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 193 ~~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
.++..+.+.+.+++.+.++.|+.-..+.++-....+.++..++.....+.+++++++.+.
T Consensus 984 ~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~ 1043 (1486)
T PRK04863 984 SDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQEL 1043 (1486)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888899999999999888888888888888887777777776666666665443
No 222
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.54 E-value=6.2e+02 Score=27.33 Aligned_cols=9 Identities=0% Similarity=-0.153 Sum_probs=3.4
Q ss_pred ccccCCCCC
Q 037676 178 LEAVGPKGN 186 (267)
Q Consensus 178 ~~~~~~~rg 186 (267)
|...-|.+|
T Consensus 473 Ykl~~G~~g 481 (771)
T TIGR01069 473 YKLLKGIPG 481 (771)
T ss_pred EEECCCCCC
Confidence 444333333
No 223
>PRK06835 DNA replication protein DnaC; Validated
Probab=25.19 E-value=4.5e+02 Score=25.22 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQL---------------KAENDKLKEAVKELERKRVQED 256 (267)
Q Consensus 223 y~~eLE~~v~~L---------------~~EN~~L~~~l~~L~~~~k~~~ 256 (267)
-+.+|+.++..+ +...+.|++++.+|.++....|
T Consensus 37 ~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~lL 85 (329)
T PRK06835 37 EIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVKKAELL 85 (329)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788777654 5556788888888876655444
No 224
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.07 E-value=4.1e+02 Score=22.20 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=40.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 201 RRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQE 255 (267)
Q Consensus 201 rRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~ 255 (267)
-+..-+..-.|...-|+..=..--++|+..+..|+.+|.....++.+|+.++.+.
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666667777777776666677788888888888888888888887665443
No 225
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=25.03 E-value=1.1e+02 Score=29.85 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
++++..++..|+.+..+|++++.+|+.
T Consensus 291 lDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 291 LDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455556666666666666665543
No 226
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=24.92 E-value=3.6e+02 Score=22.16 Aligned_cols=40 Identities=33% Similarity=0.438 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 216 SRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQE 255 (267)
Q Consensus 216 SR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~ 255 (267)
-+.+-.+...+++.++...+.+...|+.+|......+++.
T Consensus 75 e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k 114 (139)
T PF05615_consen 75 ERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNK 114 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556667777888888899998888776555443
No 227
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=24.90 E-value=3.1e+02 Score=30.90 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=26.2
Q ss_pred cccccCccccc----ccHHHHHHHHHhccCCCcCCCCCCCCCCCCCCcchHHH
Q 037676 20 NSFSIPILLCK----KTVEEVWSEIQKDQQPQRRCHVEPPQRQPTFGEITLEE 68 (267)
Q Consensus 20 gSlTLpr~Ls~----KTVDEVWrdI~~~~~~~~~~~~~~~~RQ~TLGEMTLEd 68 (267)
-+|+||--++. --|++=|.|+...=.....--+..-.|+--|-.|+.||
T Consensus 809 qpl~lp~Lfv~i~~kdyvpd~~~d~~~AL~nPi~f~s~~dkr~~ql~~~~~e~ 861 (1189)
T KOG1265|consen 809 QPLTLPALFVYIVLKDYVPDDLSDLVEALANPIAFLSEMDKRARQLAALGGED 861 (1189)
T ss_pred CccccceeEEEEEeeccCCchhhhHHHHHhChHHHHHHHHHHHHHHHhcccch
Confidence 35888877653 45778888887642110000122234555566666654
No 228
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.83 E-value=6.3e+02 Score=27.20 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERKRVQEDIQAT 260 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~ 260 (267)
-+.+|+.+...|++.-+.|.++++++.++ .+.|++|+
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~-Qe~L~~R~ 616 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAKDK-QEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45556666777777777777777766554 33344433
No 229
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=24.77 E-value=5.5e+02 Score=23.58 Aligned_cols=55 Identities=27% Similarity=0.207 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 197 VVVERRQRRMIKNRESAARSRARKQAYT----VELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 197 ~~~erRqrR~ikNReSA~rSR~RKk~y~----~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+...+|.||-+..+.++-.-+-+=-.-+ ...=.++..|++.|.+|+...++|...
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888777765444332222 222245667787777777777777543
No 230
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=24.75 E-value=2.2e+02 Score=29.16 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037676 217 RARKQAYTVELELELTQ--------------LKAENDKLKEAVKELERKRVQEDIQAT 260 (267)
Q Consensus 217 R~RKk~y~~eLE~~v~~--------------L~~EN~~L~~~l~~L~~~~k~~~~e~~ 260 (267)
-+=|++|-+++|.++.. .-++...++++++-|.+.+.+.|+|+-
T Consensus 388 EAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEna 445 (593)
T KOG4807|consen 388 EAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENA 445 (593)
T ss_pred HHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999988743 356778888888888888888888863
No 231
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=24.58 E-value=5.5e+02 Score=23.56 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 197 VVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDI 257 (267)
Q Consensus 197 ~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~ 257 (267)
+..+|.+.+..+-+.+|..++..-+.+++.|+.=-..-+++-..--...++|++++-+-+-
T Consensus 153 keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q~lEeeRi~f~K 213 (242)
T cd07671 153 KQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHILTCEVFQLQEDDRITILR 213 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777788888888989988888888888766666666655666666777766655443
No 232
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.36 E-value=4.7e+02 Score=22.63 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 037676 233 QLKAENDKLKEAVKE 247 (267)
Q Consensus 233 ~L~~EN~~L~~~l~~ 247 (267)
.+++|.+.|+.+++.
T Consensus 158 ~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 158 KLSEEIEKLKKELEK 172 (192)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344444444444433
No 233
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.29 E-value=5.6e+02 Score=26.08 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 218 ARKQAYTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 218 ~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
...+.-...||..+..|+.++..+..++.+.
T Consensus 55 ~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s 85 (420)
T COG4942 55 REQQDQRAKLEKQLKSLETEIASLEAQLIET 85 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555554443
No 234
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=24.15 E-value=1.6e+02 Score=28.94 Aligned_cols=27 Identities=33% Similarity=0.258 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
+.-.|.++...|++||..|+.++..++
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~e 84 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSYE 84 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677777777777777776666544
No 235
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.07 E-value=3.1e+02 Score=20.41 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLK 235 (267)
Q Consensus 222 ~y~~eLE~~v~~L~ 235 (267)
+.+.+||.++..++
T Consensus 4 ~Ri~~LE~~la~qe 17 (69)
T PF04102_consen 4 ERIEELEIKLAFQE 17 (69)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35666666665433
No 236
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=23.96 E-value=4.7e+02 Score=23.71 Aligned_cols=50 Identities=26% Similarity=0.311 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-Hhhhcc
Q 037676 215 RSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQE-DIQ-ATEDGK 264 (267)
Q Consensus 215 rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~-~~e-~~~~~~ 264 (267)
..|.|-+..-.+-..++..|++.+..|+.+|..-..|..|- -|| .|++-|
T Consensus 116 eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSSRK 167 (179)
T PF13942_consen 116 EERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSSRK 167 (179)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhccC
Confidence 34444555556777888999999999999988877775553 233 344444
No 237
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=23.93 E-value=4.9e+02 Score=24.28 Aligned_cols=45 Identities=22% Similarity=0.239 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037676 213 AARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQAT 260 (267)
Q Consensus 213 A~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~ 260 (267)
+||-| =++...|||.++..+..+...|+.+++.|+.- +-.|.|++
T Consensus 86 sQRDR--FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D-N~kLYEKi 130 (248)
T PF08172_consen 86 SQRDR--FRQRNAELEEELRKQQQTISSLRREVESLRAD-NVKLYEKI 130 (248)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44444 44567799999999999999999999988654 45565654
No 238
>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.
Probab=23.87 E-value=36 Score=29.40 Aligned_cols=13 Identities=69% Similarity=0.843 Sum_probs=7.7
Q ss_pred CCcchHHHHHhhhc
Q 037676 61 FGEITLEEFLVKAG 74 (267)
Q Consensus 61 LGEMTLEdFLVrAG 74 (267)
=|.+|.||| |.||
T Consensus 25 tG~iTPeEF-V~AG 37 (145)
T PF03986_consen 25 TGVITPEEF-VAAG 37 (145)
T ss_dssp HS---HHHH-HHHH
T ss_pred cceeCHHHH-HHhh
Confidence 388999999 5676
No 239
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=23.65 E-value=2e+02 Score=28.15 Aligned_cols=12 Identities=33% Similarity=0.235 Sum_probs=5.2
Q ss_pred HHHHHhhhcccC
Q 037676 66 LEEFLVKAGVVQ 77 (267)
Q Consensus 66 LEdFLVrAGVVr 77 (267)
+-+.|..+|...
T Consensus 126 ~~~~l~~~G~~~ 137 (406)
T PF02388_consen 126 LIENLKALGFRH 137 (406)
T ss_dssp HHHHHHHTT-CC
T ss_pred HHHHHHhcCcee
Confidence 344444555544
No 240
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=23.52 E-value=2.5e+02 Score=27.26 Aligned_cols=35 Identities=31% Similarity=0.348 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 217 RARKQAYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 217 R~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
|++..+-.++|+.+...|..+|...+..+..|...
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~ 137 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQ 137 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44444555555555555555555555555555433
No 241
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=23.39 E-value=1.8e+02 Score=19.48 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 227 LELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 227 LE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
|-.+..+|+...+.|+.+++.|.
T Consensus 6 L~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 6 LISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677777777777776664
No 242
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=22.96 E-value=1.1e+02 Score=30.34 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKA 236 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~ 236 (267)
|+-.++|-.||.+||+
T Consensus 45 KkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 45 KKENNDLKIEVERLEN 60 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456777788888733
No 243
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=22.95 E-value=1.4e+02 Score=24.56 Aligned_cols=48 Identities=27% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 037676 220 KQAYTVELELELTQLKAEND-KLKEAVKELERKRVQEDIQATEDGKKED 267 (267)
Q Consensus 220 Kk~y~~eLE~~v~~L~~EN~-~L~~~l~~L~~~~k~~~~e~~~~~~~~~ 267 (267)
|.+||.+|-..|..|+.+.. .|-.++++-+.+....-.+.-.+.|.|+
T Consensus 52 K~t~L~~LR~~lt~lQddIN~fLTeRMe~dK~~~~~~~~~~~~e~~eee 100 (103)
T PF08738_consen 52 KDTYLSELRAQLTTLQDDINEFLTERMEEDKARDAQAGEEKSDEAKEEE 100 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhHHHHHHH
No 244
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=22.90 E-value=45 Score=25.25 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.0
Q ss_pred CCCCcchHHHHHhhhcc
Q 037676 59 PTFGEITLEEFLVKAGV 75 (267)
Q Consensus 59 ~TLGEMTLEdFLVrAGV 75 (267)
..|=.||.|||+.|++.
T Consensus 37 k~LC~ls~edF~~r~p~ 53 (68)
T cd08535 37 KALCLLTKEDFRYRSPH 53 (68)
T ss_pred HHHhcCCHHHHhhhCCC
Confidence 36778999999999853
No 245
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.88 E-value=3.7e+02 Score=20.97 Aligned_cols=12 Identities=42% Similarity=0.542 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHH
Q 037676 222 AYTVELELELTQ 233 (267)
Q Consensus 222 ~y~~eLE~~v~~ 233 (267)
+.+.+||.+++.
T Consensus 8 ~Ri~eLE~r~Af 19 (72)
T COG2900 8 ARIIELEIRLAF 19 (72)
T ss_pred HHHHHHHHHHHH
Confidence 356666666643
No 246
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.87 E-value=3.7e+02 Score=25.54 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=17.0
Q ss_pred CCCCCCcchHHHHHhhhcccC
Q 037676 57 RQPTFGEITLEEFLVKAGVVQ 77 (267)
Q Consensus 57 RQ~TLGEMTLEdFLVrAGVVr 77 (267)
..+...-++|.|||--.||-=
T Consensus 7 ~~~~~~~isL~~FL~~~~I~F 27 (325)
T PF08317_consen 7 DDEDYEPISLQDFLNMTGIRF 27 (325)
T ss_pred ccCCCCCcCHHHHHHHhCcee
Confidence 345667799999999999854
No 247
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=22.84 E-value=43 Score=26.75 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=35.8
Q ss_pred ccccccCcccccccHHHHHHHHHhccCCCcCCCC---CCCCCCCCCCcchHHHHHhhhcc
Q 037676 19 QNSFSIPILLCKKTVEEVWSEIQKDQQPQRRCHV---EPPQRQPTFGEITLEEFLVKAGV 75 (267)
Q Consensus 19 QgSlTLpr~Ls~KTVDEVWrdI~~~~~~~~~~~~---~~~~RQ~TLGEMTLEdFLVrAGV 75 (267)
|.-|.+|..-..=|-+.||.=+.-......=... ...---..|=.||.|||+.||..
T Consensus 10 q~rl~IP~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F~m~Gk~LC~Ls~edF~~r~p~ 69 (89)
T cd08534 10 QERLKIPYDPMEWTEDQVLHWVVWAVKEFSLTDIDLSDWNITGRELCSLTQEEFFQRVPK 69 (89)
T ss_pred HHhcCCCCChHHcCHHHHHHHHHHHHHHcCCCCCChhhcCCCHHHHhcCCHHHHHHHcCC
Confidence 4568888888889999998766543221110011 11111235778999999999964
No 248
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=22.81 E-value=4.8e+02 Score=22.82 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccc
Q 037676 222 AYTVELELELTQLKAENDKLKE--AVKELERKRVQEDIQATEDGKK 265 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~--~l~~L~~~~k~~~~e~~~~~~~ 265 (267)
+-.++|+..+..++.+...... ...++...++.+-.+.+.+||+
T Consensus 79 ~~~e~lk~~L~~~~~q~~~~~~~~~~~e~~~~~kk~E~e~v~~GKk 124 (168)
T PF06102_consen 79 EEREELKRELQRMESQLKARKRKDREREVKKEHKKEEREKVKQGKK 124 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4455555555555554444433 3455667777888888888886
No 249
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=22.79 E-value=2e+02 Score=30.17 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELERKRVQEDI 257 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~ 257 (267)
.|++++=..++.||++|..+.+++.+++......-.
T Consensus 370 ~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~ 405 (557)
T PF01763_consen 370 GQINNQFDTIEDLKEENQDLEKKLRELESELSRYRE 405 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666677888888888888888765444433
No 250
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=22.71 E-value=3.4e+02 Score=26.74 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.+..|+.+...|+.++..+++++..++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (398)
T PTZ00454 30 ELEFLDIQEEYIKEEQKNLKRELIRAKEE 58 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666555554443
No 251
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.67 E-value=5.3e+02 Score=24.03 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=9.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 037676 206 MIKNRESAARSRARKQAYTVE 226 (267)
Q Consensus 206 ~ikNReSA~rSR~RKk~y~~e 226 (267)
.++-|+.++-.-.+|.+|+.-
T Consensus 154 vlk~R~~~Q~~le~k~e~l~k 174 (243)
T cd07666 154 VIKRRDQIQAELDSKVEALAN 174 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444433
No 252
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.63 E-value=2.9e+02 Score=20.97 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.+.++.++..|+.+-..+..++.+++..
T Consensus 71 ~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 71 IEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666665544
No 253
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=22.59 E-value=5e+02 Score=22.29 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKEAVKELERKRVQEDIQ 258 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e 258 (267)
-|..+-..|..-....+.++..+.......+++
T Consensus 74 ~L~~r~~~l~~v~~~a~~kL~~~~~~~y~~~l~ 106 (188)
T PRK02292 74 RLNARKEVLEDVRNQVEDEIASLDGDKREELTK 106 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 444444455555555555565554433333333
No 254
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=22.56 E-value=5.5e+02 Score=22.82 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037676 213 AARSRARKQAYTVELEL 229 (267)
Q Consensus 213 A~rSR~RKk~y~~eLE~ 229 (267)
.+-|++++++|.+.||.
T Consensus 104 ~~~cqKKEkEykealea 120 (159)
T PF04949_consen 104 GQSCQKKEKEYKEALEA 120 (159)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44577888999999885
No 255
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=22.50 E-value=4.1e+02 Score=26.15 Aligned_cols=50 Identities=28% Similarity=0.414 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 201 RRQRRMIKNRESAARSRARKQAYTVEL----------------------------ELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 201 rRqrR~ikNReSA~rSR~RKk~y~~eL----------------------------E~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
+++|+++++|......=+|| +.|+ ..+|..|..++.+|+++|.+++.+.
T Consensus 122 ~e~r~~lk~RI~rSEAFKRK---llE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL 198 (323)
T PF08537_consen 122 REERRLLKDRILRSEAFKRK---LLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKEL 198 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 037676 253 V 253 (267)
Q Consensus 253 k 253 (267)
.
T Consensus 199 ~ 199 (323)
T PF08537_consen 199 E 199 (323)
T ss_pred H
No 256
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=22.39 E-value=2.3e+02 Score=24.05 Aligned_cols=25 Identities=40% Similarity=0.452 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
+..|..++..|+.+...+..++.++
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 257
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.33 E-value=3.9e+02 Score=21.03 Aligned_cols=49 Identities=24% Similarity=0.319 Sum_probs=24.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 200 ERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 200 erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
.+|..+.+.+=|+|-..|.-+..-..+||.++..|...-.+|-.+|...
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~ 58 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQA 58 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhH
Confidence 3444444555455544444444444566666655555555555444433
No 258
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.28 E-value=2.9e+02 Score=21.92 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 037676 234 LKAENDKLKEAVKEL 248 (267)
Q Consensus 234 L~~EN~~L~~~l~~L 248 (267)
|..+|..|+.+....
T Consensus 51 L~~en~qLk~E~~~W 65 (79)
T PRK15422 51 LERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 259
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=22.25 E-value=3.8e+02 Score=27.44 Aligned_cols=47 Identities=32% Similarity=0.424 Sum_probs=30.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Q 037676 205 RMIKNRESAARSRARKQAYTVELEL------------ELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 205 R~ikNReSA~rSR~RKk~y~~eLE~------------~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+|-+-=+-|-+-+..-++|++.||. +...|+.|+.+|..+++++++.
T Consensus 147 ~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~ 205 (447)
T KOG2751|consen 147 KLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKE 205 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566677778888888875 2345677777777777776543
No 260
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=22.20 E-value=44 Score=25.93 Aligned_cols=56 Identities=18% Similarity=0.115 Sum_probs=34.9
Q ss_pred ccccccCcccccccHHHHHHHHHhccCCCcCCCCCC---CCCCCCCCcchHHHHHhhhc
Q 037676 19 QNSFSIPILLCKKTVEEVWSEIQKDQQPQRRCHVEP---PQRQPTFGEITLEEFLVKAG 74 (267)
Q Consensus 19 QgSlTLpr~Ls~KTVDEVWrdI~~~~~~~~~~~~~~---~~RQ~TLGEMTLEdFLVrAG 74 (267)
|..+-+|..-..=|.++|+.=|.--.....-..... .---..|=.||.|||+.+|+
T Consensus 8 ~~~~~ip~dP~~Wt~~~V~~Wl~w~~~ef~L~~~~~~~f~m~G~~Lc~ls~edF~~~~p 66 (82)
T smart00251 8 QKRLGIPADPQLWTEDHVLEWLEWAVKEFSLSPIDFSKFDMSGKELCSMSKEEFLERAP 66 (82)
T ss_pred HHHhCCCCChhhCCHHHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHcCCHHHHHHHcC
Confidence 345677777778899999877765332221111111 11123577899999999997
No 261
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=22.19 E-value=44 Score=26.16 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=14.4
Q ss_pred CCCCcchHHHHHhhhcc
Q 037676 59 PTFGEITLEEFLVKAGV 75 (267)
Q Consensus 59 ~TLGEMTLEdFLVrAGV 75 (267)
..|=.||.|||+-+||-
T Consensus 43 k~LC~ms~eeF~~~~p~ 59 (78)
T cd08538 43 LQLCSMTQEEFIEAAGI 59 (78)
T ss_pred HHHHcCCHHHHHHHccc
Confidence 35778999999999974
No 262
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.17 E-value=5.9e+02 Score=23.04 Aligned_cols=30 Identities=17% Similarity=0.051 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
...+.+|+.+...|++++..++.++..|+.
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777777777777777776665543
No 263
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=22.13 E-value=5.6e+02 Score=28.72 Aligned_cols=14 Identities=36% Similarity=0.354 Sum_probs=5.3
Q ss_pred HHHHhHHHHHHHHH
Q 037676 205 RMIKNRESAARSRA 218 (267)
Q Consensus 205 R~ikNReSA~rSR~ 218 (267)
|+.++-|-|--.|+
T Consensus 925 r~rk~qE~~E~ER~ 938 (1259)
T KOG0163|consen 925 RLRKIQELAEAERK 938 (1259)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 264
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=22.11 E-value=4.3e+02 Score=23.84 Aligned_cols=8 Identities=25% Similarity=0.609 Sum_probs=1.4
Q ss_pred HHHhhhcc
Q 037676 257 IQATEDGK 264 (267)
Q Consensus 257 ~e~~~~~~ 264 (267)
.|.+..|+
T Consensus 122 we~~q~Gk 129 (190)
T PF06936_consen 122 WESMQEGK 129 (190)
T ss_dssp HHH-----
T ss_pred HHHHHHHH
Confidence 35555544
No 265
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=21.93 E-value=2.2e+02 Score=21.04 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037676 227 LELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 227 LE~~v~~L~~EN~~L~~~l~~L 248 (267)
+|.++..||......+.+.+..
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~a 51 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAA 51 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544444444433
No 266
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=21.91 E-value=2.1e+02 Score=22.48 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
+.+|-.+..+|++|...|+.+++++.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888876665543
No 267
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.60 E-value=6e+02 Score=22.86 Aligned_cols=62 Identities=13% Similarity=0.129 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 197 VVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQ 258 (267)
Q Consensus 197 ~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e 258 (267)
+..+|-+.++.|-+.+|..++..-+..++.|+.--..-+.+-...-..++++++.+-+-+-+
T Consensus 153 ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~ 214 (239)
T cd07647 153 KEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEEERIKFLRN 214 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888877777777777554556666666666677777776665533
No 268
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.34 E-value=5.8e+02 Score=27.41 Aligned_cols=9 Identities=56% Similarity=0.667 Sum_probs=4.3
Q ss_pred HHHHHhhhc
Q 037676 66 LEEFLVKAG 74 (267)
Q Consensus 66 LEdFLVrAG 74 (267)
+|+-|.+||
T Consensus 173 Iee~L~~ag 181 (652)
T COG2433 173 IEEKLDEAG 181 (652)
T ss_pred HHHHHHhcC
Confidence 444455554
No 269
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=21.33 E-value=2.3e+02 Score=29.64 Aligned_cols=27 Identities=41% Similarity=0.578 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.-||.++..|+.||.+|..+|..+...
T Consensus 165 ~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 165 KALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345556667777788777777766543
No 270
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.28 E-value=5e+02 Score=21.80 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERKRVQEDIQATE 261 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~~ 261 (267)
+..|+.++..|+..-..|..-...++...++.+.+.++
T Consensus 83 ~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~~~~~~~~ 120 (134)
T cd04779 83 VQLVCDQIDGLEHRLKQLKPIASQTDRAQRMKMTKELS 120 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33455555555555555555555555555555555543
No 271
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=21.25 E-value=1.4e+02 Score=29.35 Aligned_cols=19 Identities=42% Similarity=0.357 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037676 231 LTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 231 v~~L~~EN~~L~~~l~~L~ 249 (267)
...|++||++|++++.+|+
T Consensus 59 y~~L~~EN~~Lk~Ena~L~ 77 (337)
T PRK14872 59 ALVLETENFLLKERIALLE 77 (337)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555553
No 272
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.01 E-value=2.3e+02 Score=25.02 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 220 KQAYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 220 Kk~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
-++|+..|+..+..++.-+.+|.++..++.
T Consensus 19 ~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~ 48 (200)
T cd07624 19 MNEYLTLFGEKLGTIERISQRIHKERIEYF 48 (200)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 356666777766666666666666555554
No 273
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=21.00 E-value=70 Score=24.73 Aligned_cols=33 Identities=12% Similarity=0.367 Sum_probs=23.6
Q ss_pred cCcccccccHHHHHHHHHhccCCCcCCCCCCCCCCCCCCcchHHHHHhh
Q 037676 24 IPILLCKKTVEEVWSEIQKDQQPQRRCHVEPPQRQPTFGEITLEEFLVK 72 (267)
Q Consensus 24 Lpr~Ls~KTVDEVWrdI~~~~~~~~~~~~~~~~RQ~TLGEMTLEdFLVr 72 (267)
+-..++.+-||++|+++-.+.. |.++++||+.-
T Consensus 44 lg~k~t~~ev~~m~~~~D~d~d----------------G~Idf~EFv~l 76 (88)
T cd05029 44 IGSKLQDAEIAKLMEDLDRNKD----------------QEVNFQEYVTF 76 (88)
T ss_pred cCCCCCHHHHHHHHHHhcCCCC----------------CCCcHHHHHHH
Confidence 4455788889999998843321 67889999754
No 274
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=20.98 E-value=82 Score=27.95 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037676 231 LTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 231 v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.+.|+.++.+|+.++.+|+++
T Consensus 26 KE~L~~~~QRLkDE~RDLKqE 46 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDLKQE 46 (166)
T ss_dssp HHHHHHCH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666655555444
No 275
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=20.84 E-value=7e+02 Score=23.84 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037676 230 ELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 230 ~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
++..+.++.++|..+...|+++
T Consensus 164 e~ee~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 164 EYEEVQERLKRLEVENSRLEEM 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444433
No 276
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=20.84 E-value=49 Score=26.62 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=35.8
Q ss_pred ccccccCcccccccHHHHHHHHHhccCCCcCCCC---CCC-CCCCCCCcchHHHHHhhhccc
Q 037676 19 QNSFSIPILLCKKTVEEVWSEIQKDQQPQRRCHV---EPP-QRQPTFGEITLEEFLVKAGVV 76 (267)
Q Consensus 19 QgSlTLpr~Ls~KTVDEVWrdI~~~~~~~~~~~~---~~~-~RQ~TLGEMTLEdFLVrAGVV 76 (267)
|.-+.+|..-..=|-+.||.=+.=......=... ..+ =--.-|=.||-|||+.+|+..
T Consensus 8 ~~rl~IP~DP~~Wt~~hV~~WL~Wa~~ef~L~~vd~~~F~~m~Gk~LC~LskedF~~~~p~~ 69 (91)
T cd08541 8 ERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLRATSLY 69 (91)
T ss_pred ceeeeCCCChhhcCHHHHHHHHHHHHHHcCCCCCChhhccCCCHHHHHhCCHHHHHHHcCCC
Confidence 4457889999999999998766532211110011 111 012347789999999998654
No 277
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=20.82 E-value=37 Score=27.91 Aligned_cols=24 Identities=4% Similarity=0.146 Sum_probs=18.7
Q ss_pred ccccccCcccccccHHHHHHHHHh
Q 037676 19 QNSFSIPILLCKKTVEEVWSEIQK 42 (267)
Q Consensus 19 QgSlTLpr~Ls~KTVDEVWrdI~~ 42 (267)
.|-+.|-+++.+=||-||-+-|-.
T Consensus 62 ~Ggy~l~~~~~~Itl~dv~~a~eg 85 (135)
T TIGR02010 62 GGGYQLGRPAEDISVADIIDAVDE 85 (135)
T ss_pred CCCEeccCCHHHCcHHHHHHHhCC
Confidence 466888888888888888887743
No 278
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=20.79 E-value=3.9e+02 Score=24.81 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
.+++.++.++..|+..-+.+..+...|.
T Consensus 172 ~~Le~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 172 KKLEKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 3344444444444444444444444443
No 279
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.79 E-value=4.6e+02 Score=21.21 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
++.|+.++..|+.+-..|...++.|..+
T Consensus 82 ~~~l~~~~~~l~~~~~~l~~~~~~L~~~ 109 (118)
T cd04776 82 LEKIEKRRAELEQQRRDIDAALAELDAA 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666655555444
No 280
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=20.50 E-value=2.3e+02 Score=23.67 Aligned_cols=41 Identities=32% Similarity=0.424 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 200 ERRQRRMIKNRESAARSRARKQAYTVELE----LELTQLKAENDKLKEAVKELERKRV 253 (267)
Q Consensus 200 erRqrR~ikNReSA~rSR~RKk~y~~eLE----~~v~~L~~EN~~L~~~l~~L~~~~k 253 (267)
+.++.|.|+| .+.+|+ ..+..|+++...|++++..|+.+.+
T Consensus 63 e~K~~r~i~~-------------ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 63 EEKIPRKIEE-------------MLSDLEVARQSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHhhhHHHHH-------------HHhhccccccchHHHHHHHHHHHHHHHHHHHHHhc
No 281
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=20.44 E-value=66 Score=22.43 Aligned_cols=11 Identities=18% Similarity=0.637 Sum_probs=9.2
Q ss_pred HHHHHHHHHhc
Q 037676 33 VEEVWSEIQKD 43 (267)
Q Consensus 33 VDEVWrdI~~~ 43 (267)
.|||||++++.
T Consensus 23 Ldel~r~l~~k 33 (42)
T PF12221_consen 23 LDELFRKLQDK 33 (42)
T ss_pred HHHHHHHHHHH
Confidence 49999999863
No 282
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=20.40 E-value=3.5e+02 Score=21.30 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=39.0
Q ss_pred CChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 193 GPHEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 193 ~~~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
.++|........++|+.=...+.+=.-=-..++..+.+...|+.||.-|..=+..|..
T Consensus 8 ~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 8 EDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455333333445555544555555555667788888899999999999998888854
No 283
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=20.39 E-value=5.3e+02 Score=22.37 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 037676 211 ESAARSRARKQAYT 224 (267)
Q Consensus 211 eSA~rSR~RKk~y~ 224 (267)
+.|...-.+|++-.
T Consensus 138 ~~a~~~l~kkk~~~ 151 (236)
T PF09325_consen 138 QNAEKELQKKKAQL 151 (236)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 284
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.38 E-value=3.3e+02 Score=22.89 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKE 243 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~ 243 (267)
.+|+.+....++|-....+
T Consensus 107 ~~L~~E~~~~~~el~~~v~ 125 (144)
T PF11221_consen 107 KELEEENEEAEEELQEAVK 125 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333
No 285
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=20.33 E-value=90 Score=29.28 Aligned_cols=24 Identities=13% Similarity=0.338 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 229 LELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 229 ~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
.|+..||.|...|+.||+.+...+
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~q 145 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAAQ 145 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467788889999999998886554
No 286
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.23 E-value=2.3e+02 Score=21.88 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
+-+.++..|++++...+.-|..+
T Consensus 56 eq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 56 EQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555554444444333
No 287
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.19 E-value=3.8e+02 Score=27.25 Aligned_cols=34 Identities=29% Similarity=0.234 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERKRVQED 256 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~ 256 (267)
|+..|-.++..|.++.+.+..++.+++.+....+
T Consensus 69 ~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l 102 (429)
T COG0172 69 DAEELIAEVKELKEKLKELEAALDELEAELDTLL 102 (429)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6777888888888888888887777766655444
No 288
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=20.15 E-value=50 Score=25.75 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.0
Q ss_pred CCCCcchHHHHHhhhccc
Q 037676 59 PTFGEITLEEFLVKAGVV 76 (267)
Q Consensus 59 ~TLGEMTLEdFLVrAGVV 76 (267)
..|=-|++|+||-++|++
T Consensus 41 ~~LC~ms~e~F~~~~p~~ 58 (74)
T cd08539 41 EHLCSMSLQEFTRAAGTA 58 (74)
T ss_pred HHHHccCHHHHhhcCCch
Confidence 467789999999888775
No 289
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=20.10 E-value=94 Score=24.63 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=24.2
Q ss_pred ccHHHHHHHHHhccCCCcCCCCCCCCCCCCCCcchH---HHHHhhhcccCCC
Q 037676 31 KTVEEVWSEIQKDQQPQRRCHVEPPQRQPTFGEITL---EEFLVKAGVVQEP 79 (267)
Q Consensus 31 KTVDEVWrdI~~~~~~~~~~~~~~~~RQ~TLGEMTL---EdFLVrAGVVrE~ 79 (267)
=|++|||+.+... .++++-.|. =|||+++|+|..-
T Consensus 24 ~ta~ei~~~l~~~--------------~~~is~~TVYR~L~~L~e~Gli~~~ 61 (120)
T PF01475_consen 24 LTAEEIYDKLRKK--------------GPRISLATVYRTLDLLEEAGLIRKI 61 (120)
T ss_dssp EEHHHHHHHHHHT--------------TTT--HHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhhhc--------------cCCcCHHHHHHHHHHHHHCCeEEEE
Confidence 3899999999753 244555543 2789999999754
No 290
>PF02187 GAS2: Growth-Arrest-Specific Protein 2 Domain; InterPro: IPR003108 The growth-arrest-specific protein 2 domain is found associated with the spectrin repeat, calponin homology domain and EF hand in many proteins. It is found among others in the growth arrest-specific protein 2 [].; GO: 0007050 cell cycle arrest; PDB: 1V5R_A.
Probab=20.05 E-value=45 Score=25.95 Aligned_cols=12 Identities=58% Similarity=0.579 Sum_probs=9.8
Q ss_pred CcchHHHHHhhh
Q 037676 62 GEITLEEFLVKA 73 (267)
Q Consensus 62 GEMTLEdFLVrA 73 (267)
|=+|||+||.|-
T Consensus 55 GW~tL~~~L~kh 66 (73)
T PF02187_consen 55 GWDTLEEYLDKH 66 (73)
T ss_dssp EEEEHHHHHHHH
T ss_pred cHHHHHHHhhcc
Confidence 458999999874
No 291
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=20.01 E-value=3.4e+02 Score=24.03 Aligned_cols=52 Identities=23% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcccC
Q 037676 215 RSRARKQAYTVELELELTQLKAENDKLKEAVKELE-----RKRVQEDIQATEDGKKE 266 (267)
Q Consensus 215 rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~-----~~~k~~~~e~~~~~~~~ 266 (267)
..+..++.-++.|..++..++.+...|+.++.... ...+..+++++.+-+++
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~ 118 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKE 118 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Done!