Query 037676
Match_columns 267
No_of_seqs 188 out of 733
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 04:53:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.6 1.3E-15 4.4E-20 109.5 6.3 52 201-252 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.4 1.1E-12 3.6E-17 96.1 8.5 53 200-252 1-53 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.3 7.8E-12 2.7E-16 90.7 8.3 52 201-252 1-52 (61)
4 2dgc_A Protein (GCN4); basic d 99.2 1.4E-11 4.8E-16 90.6 6.7 51 202-252 10-60 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.2 5.2E-11 1.8E-15 86.7 8.2 52 201-252 1-52 (62)
6 1ci6_A Transcription factor AT 98.9 2.1E-09 7.3E-14 78.7 7.1 51 201-251 2-52 (63)
7 1gu4_A CAAT/enhancer binding p 98.6 1.1E-07 3.9E-12 72.6 8.2 57 195-251 9-65 (78)
8 1hjb_A Ccaat/enhancer binding 98.6 1.9E-07 6.4E-12 72.8 8.3 58 195-252 9-66 (87)
9 1gd2_E Transcription factor PA 98.3 2.7E-06 9.4E-11 63.8 8.6 48 203-250 10-57 (70)
10 3a5t_A Transcription factor MA 98.3 8.3E-08 2.8E-12 77.4 0.3 55 195-249 31-92 (107)
11 2wt7_B Transcription factor MA 98.1 2.8E-05 9.4E-10 61.0 9.8 56 195-250 21-76 (90)
12 2oqq_A Transcription factor HY 96.4 0.0047 1.6E-07 42.1 4.6 31 221-251 2-32 (42)
13 1skn_P DNA-binding domain of S 96.1 0.0028 9.5E-08 49.8 2.8 35 195-229 56-90 (92)
14 2c9l_Y EB1, zebra, BZLF1 trans 92.1 0.83 2.8E-05 33.0 7.7 43 205-247 5-47 (63)
15 1kd8_B GABH BLL, GCN4 acid bas 90.3 0.52 1.8E-05 31.0 4.8 30 223-252 2-31 (36)
16 2oxj_A Hybrid alpha/beta pepti 88.8 0.68 2.3E-05 30.1 4.4 29 223-251 2-30 (34)
17 3m48_A General control protein 88.7 0.5 1.7E-05 30.6 3.7 28 224-251 2-29 (33)
18 2kz5_A Transcription factor NF 88.2 0.048 1.6E-06 42.7 -1.7 29 194-222 59-87 (91)
19 1kd8_A GABH AIV, GCN4 acid bas 87.1 0.8 2.7E-05 30.2 4.0 30 223-252 2-31 (36)
20 1am9_A Srebp-1A, protein (ster 84.6 1.5 5.1E-05 32.8 5.0 30 220-249 48-77 (82)
21 3c3f_A Alpha/beta peptide with 84.3 1.7 5.7E-05 28.3 4.4 29 223-251 2-30 (34)
22 3c3g_A Alpha/beta peptide with 84.2 2.3 8E-05 27.5 5.0 28 224-251 2-29 (33)
23 3s9g_A Protein hexim1; cyclin 84.1 6 0.0002 31.5 8.4 28 221-248 64-91 (104)
24 2oa5_A Hypothetical protein BQ 84.1 0.58 2E-05 37.8 2.7 25 223-247 9-33 (110)
25 1nkp_B MAX protein, MYC proto- 84.0 2 7E-05 31.8 5.5 32 221-252 46-77 (83)
26 1dip_A Delta-sleep-inducing pe 83.1 1.2 4.2E-05 33.7 4.0 23 221-243 21-43 (78)
27 2wuj_A Septum site-determining 82.3 1.3 4.6E-05 31.2 3.7 30 222-251 27-56 (57)
28 1gmj_A ATPase inhibitor; coile 82.2 8.4 0.00029 29.6 8.4 65 186-250 13-79 (84)
29 2oqq_A Transcription factor HY 81.8 3.2 0.00011 28.2 5.2 25 222-246 17-41 (42)
30 1uo4_A General control protein 80.9 2.1 7.3E-05 27.8 3.9 29 223-251 2-30 (34)
31 2wq1_A General control protein 80.8 3.7 0.00013 26.5 5.0 28 224-251 2-29 (33)
32 2bni_A General control protein 80.7 2.4 8.1E-05 27.6 4.1 29 223-251 2-30 (34)
33 2hy6_A General control protein 79.9 2.8 9.7E-05 27.2 4.2 29 223-251 2-30 (34)
34 1nlw_A MAD protein, MAX dimeri 79.5 4.9 0.00017 30.1 6.2 33 219-251 44-76 (80)
35 3s9g_A Protein hexim1; cyclin 78.6 5.7 0.0002 31.6 6.5 18 226-243 41-58 (104)
36 2dfs_A Myosin-5A; myosin-V, in 76.2 11 0.00038 40.0 10.0 29 221-249 1015-1043(1080)
37 1p9i_A Cortexillin I/GCN4 hybr 75.1 4.2 0.00015 25.4 3.9 26 226-251 3-28 (31)
38 1fmh_A General control protein 74.9 5.7 0.00019 25.2 4.5 28 224-251 3-30 (33)
39 1deb_A APC protein, adenomatou 74.9 3.9 0.00013 28.9 4.1 25 224-248 5-29 (54)
40 1zme_C Proline utilization tra 74.6 2.1 7.3E-05 29.8 2.9 26 221-246 43-68 (70)
41 1nkp_A C-MYC, MYC proto-oncoge 72.5 7.6 0.00026 29.4 5.7 32 220-251 50-81 (88)
42 1hjb_A Ccaat/enhancer binding 71.9 31 0.0011 26.4 9.4 67 187-253 5-74 (87)
43 2yy0_A C-MYC-binding protein; 71.3 6 0.00021 27.6 4.5 22 230-251 20-41 (53)
44 2r2v_A GCN4 leucine zipper; co 69.7 11 0.00037 24.5 5.0 28 224-251 3-30 (34)
45 3oja_A Leucine-rich immune mol 67.3 34 0.0012 31.9 10.1 37 215-251 428-464 (487)
46 1go4_E MAD1 (mitotic arrest de 66.0 11 0.00036 29.9 5.3 30 223-252 13-42 (100)
47 1hlo_A Protein (transcription 66.0 5.2 0.00018 29.4 3.4 24 221-244 56-79 (80)
48 3hnw_A Uncharacterized protein 65.1 54 0.0018 26.7 9.7 30 220-249 101-130 (138)
49 2k8f_B Cellular tumor antigen 64.4 2.9 9.9E-05 27.7 1.5 22 19-40 5-26 (39)
50 3he5_A Synzip1; heterodimeric 64.4 23 0.00078 24.1 6.0 23 223-245 4-26 (49)
51 3o0z_A RHO-associated protein 62.6 50 0.0017 28.2 9.3 57 205-262 73-129 (168)
52 2dgc_A Protein (GCN4); basic d 60.8 25 0.00087 25.0 6.2 54 193-246 5-61 (63)
53 2yy0_A C-MYC-binding protein; 60.5 12 0.00042 26.0 4.3 21 225-245 29-49 (53)
54 3ra3_B P2F; coiled coil domain 58.2 7 0.00024 24.0 2.3 20 231-250 2-21 (28)
55 3w03_C DNA repair protein XRCC 57.5 26 0.00088 30.3 6.7 38 222-260 145-182 (184)
56 3he4_B Synzip5; heterodimeric 57.3 23 0.00079 23.8 5.0 29 221-249 9-37 (46)
57 2ve7_C Kinetochore protein NUF 57.3 9.6 0.00033 33.9 4.2 59 200-258 119-184 (250)
58 2lz1_A Nuclear factor erythroi 56.4 0.23 7.8E-06 38.8 -5.7 26 196-221 61-86 (90)
59 3oja_A Leucine-rich immune mol 56.1 82 0.0028 29.2 10.6 53 205-257 425-477 (487)
60 3mq9_A Bone marrow stromal ant 55.4 85 0.0029 29.0 10.5 33 223-255 430-462 (471)
61 3nmd_A CGMP dependent protein 54.5 20 0.00069 26.8 4.8 31 218-248 36-66 (72)
62 3a2a_A Voltage-gated hydrogen 54.4 22 0.00074 25.5 4.8 28 224-251 20-47 (58)
63 1nkp_B MAX protein, MYC proto- 54.3 11 0.00039 27.6 3.5 24 225-248 57-80 (83)
64 3ghg_A Fibrinogen alpha chain; 53.3 28 0.00095 34.8 7.0 43 215-257 103-145 (562)
65 3oja_B Anopheles plasmodium-re 52.6 52 0.0018 31.2 8.7 30 220-249 535-564 (597)
66 3oja_B Anopheles plasmodium-re 52.3 1.1E+02 0.0037 28.9 10.9 14 233-246 541-554 (597)
67 2er8_A Regulatory protein Leu3 51.6 8.2 0.00028 27.0 2.3 22 221-242 48-69 (72)
68 1jnm_A Proto-oncogene C-JUN; B 50.8 60 0.0021 22.6 6.7 52 199-250 3-57 (62)
69 2wvr_A Geminin; DNA replicatio 50.5 1.2E+02 0.0042 26.7 10.0 41 221-263 121-161 (209)
70 1gd2_E Transcription factor PA 49.5 74 0.0025 23.3 9.3 30 223-252 37-66 (70)
71 2xus_A Breast cancer metastasi 49.0 64 0.0022 22.4 6.5 43 218-264 6-48 (49)
72 2zvf_A Alanyl-tRNA synthetase; 48.8 27 0.00091 28.2 5.3 36 225-260 28-63 (171)
73 2xdj_A Uncharacterized protein 48.0 86 0.0029 23.6 10.0 40 218-257 23-62 (83)
74 3w03_C DNA repair protein XRCC 46.5 31 0.0011 29.8 5.5 30 222-251 152-181 (184)
75 2akf_A Coronin-1A; coiled coil 46.3 43 0.0015 21.1 4.7 27 226-252 3-29 (32)
76 1ci6_A Transcription factor AT 46.1 75 0.0026 22.4 7.2 27 223-249 31-57 (63)
77 1zxa_A CGMP-dependent protein 45.6 43 0.0015 24.6 5.3 31 219-249 22-52 (67)
78 1nkp_A C-MYC, MYC proto-oncoge 45.1 32 0.0011 25.8 4.8 22 227-248 64-85 (88)
79 4ath_A MITF, microphthalmia-as 44.9 47 0.0016 25.3 5.7 30 222-251 49-78 (83)
80 1gu4_A CAAT/enhancer binding p 44.5 95 0.0033 23.1 9.3 65 187-251 5-72 (78)
81 3cve_A Homer protein homolog 1 44.4 55 0.0019 24.3 5.8 20 229-248 7-26 (72)
82 4ati_A MITF, microphthalmia-as 42.8 15 0.00051 29.2 2.8 54 196-249 31-111 (118)
83 2jws_A GA88; evolution, foldin 42.6 8 0.00027 27.7 1.0 10 29-38 35-44 (56)
84 2o6n_A RH4B designed peptide; 42.4 22 0.00074 22.7 2.9 27 239-265 5-31 (35)
85 1a93_B MAX protein, coiled coi 41.7 31 0.001 22.4 3.5 23 226-248 11-33 (34)
86 1t2k_D Cyclic-AMP-dependent tr 40.9 63 0.0022 22.4 5.5 29 223-251 30-58 (61)
87 3mq7_A Bone marrow stromal ant 40.2 1.5E+02 0.0051 24.1 8.4 26 223-248 72-97 (121)
88 1nlw_A MAD protein, MAX dimeri 39.9 30 0.001 25.6 3.9 22 226-247 58-79 (80)
89 3he4_A Synzip6; heterodimeric 39.6 55 0.0019 22.8 4.8 29 225-253 20-48 (56)
90 1gmj_A ATPase inhibitor; coile 39.5 1.3E+02 0.0043 23.0 7.7 43 207-249 22-64 (84)
91 2jee_A YIIU; FTSZ, septum, coi 39.4 70 0.0024 24.3 5.9 9 232-240 30-38 (81)
92 4dzo_A Mitotic spindle assembl 39.2 57 0.002 26.1 5.7 34 223-256 5-38 (123)
93 2jee_A YIIU; FTSZ, septum, coi 38.8 83 0.0029 23.8 6.2 15 234-248 53-67 (81)
94 1ykh_B RNA polymerase II holoe 37.9 69 0.0024 25.8 6.1 32 229-261 92-123 (132)
95 1uii_A Geminin; human, DNA rep 37.8 47 0.0016 25.4 4.7 23 227-249 51-73 (83)
96 2aze_A Transcription factor DP 37.8 69 0.0024 27.0 6.2 19 216-234 20-38 (155)
97 3hnw_A Uncharacterized protein 36.8 82 0.0028 25.6 6.4 13 236-248 110-122 (138)
98 1wt6_A Myotonin-protein kinase 36.7 1.4E+02 0.0047 22.7 8.1 33 219-251 35-67 (81)
99 1yke_B RNA polymerase II holoe 36.5 72 0.0025 26.4 6.1 31 229-260 92-122 (151)
100 3q4f_C DNA repair protein XRCC 35.9 29 0.00099 30.2 3.6 21 224-244 163-183 (186)
101 1iq3_A Ralbp1-interacting prot 35.7 21 0.00071 27.1 2.5 29 28-72 53-81 (110)
102 1wle_A Seryl-tRNA synthetase; 34.8 2E+02 0.0068 28.0 9.8 34 223-256 117-150 (501)
103 3ra3_A P1C; coiled coil domain 34.2 55 0.0019 20.0 3.6 19 233-251 4-22 (28)
104 3haj_A Human pacsin2 F-BAR; pa 33.6 1.8E+02 0.006 27.6 9.1 59 198-256 186-244 (486)
105 3s4r_A Vimentin; alpha-helix, 33.2 96 0.0033 23.5 5.9 22 229-250 23-44 (93)
106 3ljm_A Coil Ser L9C; de novo d 32.9 81 0.0028 19.6 4.3 24 225-248 4-27 (31)
107 4ath_A MITF, microphthalmia-as 32.0 87 0.003 23.8 5.4 23 221-243 38-60 (83)
108 2wt7_B Transcription factor MA 31.8 80 0.0027 24.3 5.2 37 215-251 30-70 (90)
109 2w6b_A RHO guanine nucleotide 31.5 92 0.0032 22.2 5.0 23 226-248 14-36 (56)
110 1qjt_A EH1, epidermal growth f 31.3 16 0.00055 27.0 1.1 32 28-75 42-73 (99)
111 2z5i_A TM, general control pro 31.0 1.3E+02 0.0044 20.6 6.4 36 211-246 8-43 (52)
112 2zqm_A Prefoldin beta subunit 30.9 1.2E+02 0.0042 22.6 6.2 24 228-251 83-106 (117)
113 1gk7_A Vimentin; intermediate 30.7 37 0.0013 22.3 2.7 18 229-246 20-37 (39)
114 1wlq_A Geminin; coiled-coil; 2 30.6 1E+02 0.0035 23.5 5.5 39 221-261 44-82 (83)
115 4dzn_A Coiled-coil peptide CC- 30.2 1E+02 0.0036 19.3 5.0 25 226-250 6-30 (33)
116 4abm_A Charged multivesicular 29.8 1.5E+02 0.005 22.0 6.2 22 207-228 41-62 (79)
117 2dkx_A SAM pointed domain-cont 29.7 18 0.00061 27.9 1.2 53 22-75 18-74 (96)
118 1ik9_A DNA repair protein XRCC 29.3 52 0.0018 28.6 4.2 24 225-248 142-165 (213)
119 1kd8_A GABH AIV, GCN4 acid bas 29.2 1.2E+02 0.0041 19.8 4.8 25 223-247 9-33 (36)
120 3v86_A De novo design helix; c 29.1 80 0.0027 19.1 3.7 19 227-245 5-23 (27)
121 1sv0_A ETS DNA-binding protein 28.6 18 0.00061 27.3 1.0 54 22-75 4-60 (85)
122 1eh2_A EPS15; calcium binding, 28.0 24 0.00083 26.7 1.7 30 28-73 45-74 (106)
123 2pnv_A Small conductance calci 28.0 59 0.002 21.9 3.4 20 225-244 19-38 (43)
124 2ve7_A Kinetochore protein HEC 27.8 1.5E+02 0.0051 26.9 7.2 42 24-70 4-48 (315)
125 2zqm_A Prefoldin beta subunit 27.6 1.4E+02 0.0049 22.3 6.0 28 221-248 83-110 (117)
126 3mq9_A Bone marrow stromal ant 27.4 1.2E+02 0.0043 27.9 6.7 8 31-38 141-148 (471)
127 3u06_A Protein claret segregat 27.1 2.1E+02 0.0072 27.0 8.3 24 224-247 19-42 (412)
128 1ses_A Seryl-tRNA synthetase; 27.1 99 0.0034 29.2 6.1 35 222-256 64-98 (421)
129 3e98_A GAF domain of unknown f 26.7 1.1E+02 0.0037 26.9 5.9 29 223-251 80-111 (252)
130 3aco_A Pacsin2, protein kinase 26.6 3.4E+02 0.012 24.1 9.8 58 197-254 192-249 (350)
131 3a2a_A Voltage-gated hydrogen 26.5 1.8E+02 0.0061 20.8 6.2 34 228-261 10-45 (58)
132 3vkg_A Dynein heavy chain, cyt 26.3 2E+02 0.0068 34.5 9.3 21 220-240 2033-2053(3245)
133 1g6u_A Domain swapped dimer; d 26.1 1.2E+02 0.0042 20.4 4.7 24 224-247 22-45 (48)
134 1hwt_C Protein (heme activator 26.1 26 0.0009 24.7 1.5 22 220-241 56-77 (81)
135 3pjs_K KCSA, voltage-gated pot 25.8 1.2E+02 0.0042 24.4 5.7 27 219-245 135-161 (166)
136 1x66_A Friend leukemia integra 25.7 20 0.00067 27.8 0.7 57 19-76 15-76 (98)
137 1joc_A EEA1, early endosomal a 25.6 1.7E+02 0.0057 23.0 6.3 25 225-249 14-38 (125)
138 2dq0_A Seryl-tRNA synthetase; 25.3 1.3E+02 0.0044 28.8 6.5 33 224-256 71-103 (455)
139 3mud_A DNA repair protein XRCC 25.2 1.4E+02 0.0048 25.6 6.0 34 213-246 133-166 (175)
140 1fxk_A Prefoldin; archaeal pro 24.8 1.8E+02 0.006 21.4 6.0 21 229-249 79-99 (107)
141 3swf_A CGMP-gated cation chann 24.4 2.2E+02 0.0076 21.2 7.6 53 197-263 3-59 (74)
142 2wg5_A General control protein 24.1 70 0.0024 24.8 3.7 23 226-248 11-33 (109)
143 2j5u_A MREC protein; bacterial 24.1 74 0.0025 28.0 4.3 21 224-244 38-58 (255)
144 3qne_A Seryl-tRNA synthetase, 24.1 1.6E+02 0.0054 28.7 7.0 33 224-256 73-105 (485)
145 3nmd_A CGMP dependent protein 23.7 2.3E+02 0.0077 21.0 6.4 31 220-250 31-61 (72)
146 3m9b_A Proteasome-associated A 23.6 92 0.0031 28.1 4.8 27 223-249 62-88 (251)
147 3mq7_A Bone marrow stromal ant 23.3 2.2E+02 0.0077 23.0 6.6 22 230-251 72-93 (121)
148 3coq_A Regulatory protein GAL4 23.3 78 0.0027 22.4 3.6 21 222-242 45-65 (89)
149 2jv3_A ETS1 proto-oncogene; ET 23.1 27 0.00093 27.6 1.1 54 21-75 34-91 (110)
150 3ni0_A Bone marrow stromal ant 23.1 2.2E+02 0.0074 22.4 6.2 31 218-248 56-86 (99)
151 2zxx_A Geminin; coiled-coil, c 23.0 2.4E+02 0.0083 21.2 7.8 28 221-248 40-67 (79)
152 5pal_A Parvalbumin; calcium-bi 22.7 27 0.00093 24.8 1.0 34 23-74 1-34 (109)
153 4etp_A Kinesin-like protein KA 22.7 1.9E+02 0.0065 27.1 7.1 26 224-249 19-44 (403)
154 2jq6_A EH domain-containing pr 22.6 32 0.0011 27.9 1.5 30 28-73 81-110 (139)
155 1dip_A Delta-sleep-inducing pe 22.6 22 0.00076 26.9 0.5 28 224-251 17-44 (78)
156 1sv0_C Modulator of the activi 22.5 29 0.00099 25.7 1.1 54 20-74 3-62 (82)
157 1r4g_A RNA polymerase alpha su 22.0 54 0.0019 23.0 2.3 16 214-229 15-30 (53)
158 1sxd_A GA repeat binding prote 21.9 28 0.00095 26.6 0.9 55 19-74 14-72 (91)
159 1sxe_A Transcriptional regulat 21.5 24 0.00083 27.2 0.5 56 19-75 18-78 (97)
160 2dfs_A Myosin-5A; myosin-V, in 21.5 3.6E+02 0.012 28.6 9.6 16 63-78 701-716 (1080)
161 3a7p_A Autophagy protein 16; c 21.2 3.6E+02 0.012 22.5 10.0 25 225-249 99-123 (152)
162 3mud_A DNA repair protein XRCC 21.0 2.4E+02 0.0083 24.1 6.7 28 225-252 138-165 (175)
163 4dzo_A Mitotic spindle assembl 20.9 1.5E+02 0.0052 23.6 5.2 30 229-258 4-33 (123)
164 2ytu_A Friend leukemia integra 20.7 30 0.001 28.2 1.0 58 19-76 29-90 (128)
165 2v71_A Nuclear distribution pr 20.5 1.9E+02 0.0066 24.9 6.0 35 224-258 51-85 (189)
166 2j5u_A MREC protein; bacterial 20.4 38 0.0013 29.9 1.6 26 225-250 22-47 (255)
167 1pyi_A Protein (pyrimidine pat 20.4 77 0.0026 22.9 3.1 19 222-240 48-66 (96)
168 1uii_A Geminin; human, DNA rep 20.3 2.9E+02 0.0099 21.0 8.8 28 220-247 51-78 (83)
169 1fi6_A EH domain protein REPS1 20.2 41 0.0014 24.0 1.5 30 28-73 40-69 (92)
170 1f5n_A Interferon-induced guan 20.1 6.2E+02 0.021 25.0 10.4 11 63-73 195-205 (592)
171 1s1c_X RHO-associated, coiled- 20.0 2.7E+02 0.0092 20.5 6.0 13 231-243 8-20 (71)
172 3tnu_A Keratin, type I cytoske 20.0 2.4E+02 0.0082 22.2 6.2 28 226-253 81-108 (131)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.59 E-value=1.3e-15 Score=109.46 Aligned_cols=52 Identities=37% Similarity=0.540 Sum_probs=48.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 201 RRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 201 rRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
|+++||++||+||++||.||++|+++||.+|..|+.||..|+.++..|.+.+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999999999887653
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.39 E-value=1.1e-12 Score=96.11 Aligned_cols=53 Identities=30% Similarity=0.471 Sum_probs=49.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 200 ERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 200 erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
|||++|+++||+||++||.||++|+.+||.+|..|+.+|..|+.++..|....
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999887653
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.30 E-value=7.8e-12 Score=90.70 Aligned_cols=52 Identities=27% Similarity=0.449 Sum_probs=49.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 201 RRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 201 rRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
||++|+++||++|++||.||++|+.+||.+|..|+.+|..|..++..|..+.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999997663
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.23 E-value=1.4e-11 Score=90.59 Aligned_cols=51 Identities=31% Similarity=0.361 Sum_probs=44.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 202 RQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 202 RqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
..++..+||+||++||.||++|+.+||.+|..|+.+|..|..++..|.+..
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445599999999999999999999999999999999999998887653
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.20 E-value=5.2e-11 Score=86.67 Aligned_cols=52 Identities=31% Similarity=0.456 Sum_probs=48.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 201 RRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 201 rRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
|+++|..+||+||++||.||++|+.+||.+|..|+.+|..|..++..|....
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999999999999999999987653
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.93 E-value=2.1e-09 Score=78.72 Aligned_cols=51 Identities=29% Similarity=0.457 Sum_probs=43.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 201 RRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 201 rRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
|+++++.+||.+|+|||.||++++.+|+.++..|+.+|..|+.+++.|+.+
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999765
No 7
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.63 E-value=1.1e-07 Score=72.63 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 195 HEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 195 ~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+++.++.-..|..+|.++|++||.+++....+++.++..|+.||..|+.++..|..+
T Consensus 9 ~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556668899999999999999999999999999999999999999988765
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.57 E-value=1.9e-07 Score=72.78 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 195 HEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 195 ~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
+++.+++-..|..+|.++|++||.+++....+++.++..|+.||..|+.++..|..+.
T Consensus 9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677788999999999999999999999999999999999999999987653
No 9
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.31 E-value=2.7e-06 Score=63.79 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=40.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 203 QRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 203 qrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
.+|...||.|++..|.||++|+.+||.+|..|+.+|..|..+...|..
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~ 57 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQ 57 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999998766666665555543
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.31 E-value=8.3e-08 Score=77.40 Aligned_cols=55 Identities=31% Similarity=0.459 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 037676 195 HEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQ-------LKAENDKLKEAVKELE 249 (267)
Q Consensus 195 ~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~-------L~~EN~~L~~~l~~L~ 249 (267)
.+....|.+||..|||.+|+.||.||.+.+++||.++.. |..||..|+.++..+.
T Consensus 31 ~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk 92 (107)
T 3a5t_A 31 EEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALR 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSS
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999999976654 5556666665554443
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.06 E-value=2.8e-05 Score=61.00 Aligned_cols=56 Identities=36% Similarity=0.449 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 195 HEVVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 195 ~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
-+....|..||-.|||..|+-||.||.....+||.++..|..+-..|++++..+..
T Consensus 21 eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~ 76 (90)
T 2wt7_B 21 DEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR 76 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999988877777777777666643
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=96.37 E-value=0.0047 Score=42.11 Aligned_cols=31 Identities=32% Similarity=0.520 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
|+|+.+||.++..|+..|.+|..++..|+.+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999998754
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.14 E-value=0.0028 Score=49.76 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 037676 195 HEVVVERRQRRMIKNRESAARSRARKQAYTVELEL 229 (267)
Q Consensus 195 ~e~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~ 229 (267)
......|..||..|||.+|++||+||.+.+.+|+.
T Consensus 56 ~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 56 YQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 44667899999999999999999999999888764
No 14
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=92.11 E-value=0.83 Score=32.96 Aligned_cols=43 Identities=28% Similarity=0.323 Sum_probs=32.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 205 RMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKE 247 (267)
Q Consensus 205 R~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~ 247 (267)
..-|||.++++||+|=+..++-.-.-...-..||.+|+--+++
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l~kq 47 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLLKQ 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 4468999999999998887766655555667889988865543
No 15
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=90.30 E-value=0.52 Score=31.04 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
.+..||.+|+.|-.+|..|..++..|.+..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 477899999999999999999988887654
No 16
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=88.85 E-value=0.68 Score=30.15 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.+..||.+|..|-.+|..|..+...|...
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 47889999999999999999998887654
No 17
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=88.75 E-value=0.5 Score=30.62 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+..||.+|..|-.+|..|..++..|...
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5689999999999999999998887654
No 18
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=88.15 E-value=0.048 Score=42.73 Aligned_cols=29 Identities=31% Similarity=0.330 Sum_probs=24.6
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 037676 194 PHEVVVERRQRRMIKNRESAARSRARKQA 222 (267)
Q Consensus 194 ~~e~~~erRqrR~ikNReSA~rSR~RKk~ 222 (267)
+.+....|..||.-|||.+|++||+||..
T Consensus 59 ~~Ql~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 59 ESQLALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34566789999999999999999999854
No 19
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=87.12 E-value=0.8 Score=30.16 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
.+..||.+|..|..+|..|..++..|+...
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 357899999999999999999888886653
No 20
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=84.55 E-value=1.5 Score=32.82 Aligned_cols=30 Identities=30% Similarity=0.279 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 220 KQAYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 220 Kk~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
--+|+..|+.++..|++||..|+.++++..
T Consensus 48 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 347999999999999999999998876653
No 21
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=84.34 E-value=1.7 Score=28.29 Aligned_cols=29 Identities=7% Similarity=0.158 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.+..||.+|..|-.+|..|..++..|...
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 47889999999999999999998887654
No 22
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=84.17 E-value=2.3 Score=27.46 Aligned_cols=28 Identities=7% Similarity=0.168 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+..||.+|+.|-.+|..|..++..|...
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6789999999999999999998887654
No 23
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=84.14 E-value=6 Score=31.48 Aligned_cols=28 Identities=43% Similarity=0.405 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
-+.+.+|+.+|..|..||..|.++.+..
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999999999999875433
No 24
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=84.11 E-value=0.58 Score=37.76 Aligned_cols=25 Identities=40% Similarity=0.438 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKE 247 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~ 247 (267)
-+++|+.++.+|+-||..|++++..
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999873
No 25
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=83.96 E-value=2 Score=31.79 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
-.|+..|+.++..|+.+...|++++..|+...
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999888888888888776553
No 26
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=83.14 E-value=1.2 Score=33.71 Aligned_cols=23 Identities=35% Similarity=0.284 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKE 243 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~ 243 (267)
|+.+.+|+.++.+|+.||.-||.
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677999999999999998886
No 27
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=82.27 E-value=1.3 Score=31.17 Aligned_cols=30 Identities=13% Similarity=0.347 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+|++.+...+..|..||..|+.+++.|+++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 688899999999999999999999888654
No 28
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=82.24 E-value=8.4 Score=29.63 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=36.8
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 186 NRKRIIDGPHEVVVERRQRRMIKNRESAARSRARKQ--AYTVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 186 grk~~~~~~~e~~~erRqrR~ikNReSA~rSR~RKk--~y~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
|+-|-..+..-+.+.-++-+-++.++.++....|++ .-+..-..++..|+++..+++..+.+|..
T Consensus 13 gsir~aggaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 13 GAVRDAGGAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444555666666666666666776666666665 33344444566677777777777776654
No 29
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=81.79 E-value=3.2 Score=28.20 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVK 246 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~ 246 (267)
....+||.+|+.|+.||.-|++-++
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3467899999999999999887653
No 30
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=80.85 E-value=2.1 Score=27.84 Aligned_cols=29 Identities=3% Similarity=0.088 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.+..||.+|+.|-.+|..|..++..|.+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 36789999999999999999988877653
No 31
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=80.82 E-value=3.7 Score=26.51 Aligned_cols=28 Identities=7% Similarity=0.022 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+..||.+|+.|-.+|..|..++..|.+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6789999999999999999988877654
No 32
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=80.68 E-value=2.4 Score=27.63 Aligned_cols=29 Identities=7% Similarity=0.215 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.+..||.+|..|-.+|..|..++..|.+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 46789999999999999999998887654
No 33
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=79.86 E-value=2.8 Score=27.23 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.+..||.+|+.|-.+|..|..+...|.+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 36789999999999999999988887654
No 34
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=79.54 E-value=4.9 Score=30.05 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 219 RKQAYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 219 RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+-.+|+..|+.+...|..|+..|+++...|...
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999998888665
No 35
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=78.62 E-value=5.7 Score=31.58 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKE 243 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~ 243 (267)
+||.++..|++||.+|+.
T Consensus 41 ~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666666666665
No 36
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.22 E-value=11 Score=40.05 Aligned_cols=29 Identities=34% Similarity=0.445 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
+...++|+.+|..|++||..|++++.+|+
T Consensus 1015 ~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1015 DKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888899999999999888887
No 37
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=75.08 E-value=4.2 Score=25.43 Aligned_cols=26 Identities=46% Similarity=0.555 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.|-.-+..|+.||..|+.++++|..+
T Consensus 3 qlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677888999999988888665
No 38
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=74.91 E-value=5.7 Score=25.17 Aligned_cols=28 Identities=39% Similarity=0.542 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+..||.+|.+-+.||-.|.+++.+|+.+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3578999999999999999999888764
No 39
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=74.89 E-value=3.9 Score=28.93 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
.+.|-.+|+.|+.||..|+++++.-
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dN 29 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDN 29 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 3578889999999999999988754
No 40
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=74.59 E-value=2.1 Score=29.78 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVK 246 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~ 246 (267)
..|++.||.++..|+.....|+..++
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45899999999999988888877553
No 41
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=72.54 E-value=7.6 Score=29.39 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 220 KQAYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 220 Kk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
--+|+..|+.+...|..+...|+++...|..+
T Consensus 50 A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~r 81 (88)
T 1nkp_A 50 ATAYILSVQAEEQKLISEEDLLRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999988877777666666666666544
No 42
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=71.94 E-value=31 Score=26.36 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=45.4
Q ss_pred CCCCCCCChhhHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 187 RKRIIDGPHEVVVERRQRRMIKNRESAARSRARKQ---AYTVELELELTQLKAENDKLKEAVKELERKRV 253 (267)
Q Consensus 187 rk~~~~~~~e~~~erRqrR~ikNReSA~rSR~RKk---~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k 253 (267)
.|+..|...+.-.+||.|==+.=|-|-...|.|-. ..+++||.+...|+.+...|+.++..|.....
T Consensus 5 ~kk~~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 5 AKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp -----CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666677777766666666655555543 45788999999999999999999988876543
No 43
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=71.34 E-value=6 Score=27.64 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037676 230 ELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 230 ~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
.+..|+.||..|+.++.+|.+.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~ 41 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEE 41 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666655555443
No 44
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=69.71 E-value=11 Score=24.51 Aligned_cols=28 Identities=4% Similarity=0.044 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+..||.+|+.|-.+|..|..++..|.+.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6789999999999999999888777553
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.25 E-value=34 Score=31.86 Aligned_cols=37 Identities=22% Similarity=0.087 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 215 RSRARKQAYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 215 rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+-|.|.+++++....++.+|++||++|+..+.++...
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 428 SVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 3555666777777777888888888888877776543
No 46
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=65.98 E-value=11 Score=29.86 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
-+..|..++..|+.||.+|+++++.|+.+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999999988887653
No 47
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=65.98 E-value=5.2 Score=29.42 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKEA 244 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~ 244 (267)
-.|+..|+.++..|+.++..|+++
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467777777777777777777654
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.09 E-value=54 Score=26.72 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 220 KQAYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 220 Kk~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
.+..+++++.++..|++++..|.+++..|+
T Consensus 101 ~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 101 AQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555444443
No 49
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=64.43 E-value=2.9 Score=27.66 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.6
Q ss_pred ccccccCcccccccHHHHHHHH
Q 037676 19 QNSFSIPILLCKKTVEEVWSEI 40 (267)
Q Consensus 19 QgSlTLpr~Ls~KTVDEVWrdI 40 (267)
|.-+++-++|||.|..+.|+-+
T Consensus 5 qsd~siepPLSQETFsdLW~LL 26 (39)
T 2k8f_B 5 QSDPSVEPPLSQETFSDLWKLL 26 (39)
T ss_dssp CCCSSCCCCCSCHHHHHHHHTC
T ss_pred ccccccCCCccHHHHHHHHHhC
Confidence 5668999999999999999965
No 50
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=64.36 E-value=23 Score=24.13 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAV 245 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l 245 (267)
.+..||.+|..|+.||+.|+++.
T Consensus 4 lvaqlenevaslenenetlkkkn 26 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhc
Confidence 35678999999999999998753
No 51
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=62.59 E-value=50 Score=28.22 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=37.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037676 205 RMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQATED 262 (267)
Q Consensus 205 R~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~~~ 262 (267)
.+..-=+.=+++|.+-.+.+.+|+.++..|..|..+++..+..+... +.++-|++++
T Consensus 73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e-~r~L~Ekl~~ 129 (168)
T 3o0z_A 73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGE-RKEAQDMLNH 129 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33333445567778888888888888888877777777766665433 4444444443
No 52
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=60.82 E-value=25 Score=25.04 Aligned_cols=54 Identities=26% Similarity=0.226 Sum_probs=32.9
Q ss_pred CChhhHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 193 GPHEVVVERRQRRMIKNRESAARSRARKQ---AYTVELELELTQLKAENDKLKEAVK 246 (267)
Q Consensus 193 ~~~e~~~erRqrR~ikNReSA~rSR~RKk---~y~~eLE~~v~~L~~EN~~L~~~l~ 246 (267)
++.++.+.||.+=.+.-|-|-.|-..+=. .-++.|+.+...|+.+...|+.++.
T Consensus 5 ~~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 5 ESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666666666666665555443 3456788889999999999988764
No 53
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=60.52 E-value=12 Score=26.05 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAV 245 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l 245 (267)
.+|..++..|++++.+|+.++
T Consensus 29 ~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555544
No 54
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=58.24 E-value=7 Score=23.96 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037676 231 LTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 231 v~~L~~EN~~L~~~l~~L~~ 250 (267)
+..|+..|.+|++++..|+-
T Consensus 2 irrlkqknarlkqeiaaley 21 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEY 21 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHH
Confidence 34567777777777776653
No 55
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=57.45 E-value=26 Score=30.34 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQAT 260 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~ 260 (267)
+++..+=..+..|+++|.+|.++.+.|... -+.+++++
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E-~n~~l~ql 182 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRD-WNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 345555555555555555555555554443 23444444
No 56
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=57.27 E-value=23 Score=23.82 Aligned_cols=29 Identities=41% Similarity=0.438 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
|.|+.+||.+...|+.-.+.|+=.-.+|+
T Consensus 9 knyiqeleernaelknlkehlkfakaele 37 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLKFAKAELE 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Confidence 56888888888777666666655444443
No 57
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=57.26 E-value=9.6 Score=33.95 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=32.8
Q ss_pred HHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 200 ERRQRRMI-------KNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQ 258 (267)
Q Consensus 200 erRqrR~i-------kNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e 258 (267)
.+|-+|.+ +=||+...-=.......+++..++.+|.+||.+++.+++.|+.++.+...+
T Consensus 119 ~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te 184 (250)
T 2ve7_C 119 AKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTV 184 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45666653 345555554455555667778888899999999999888887766554443
No 58
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=56.37 E-value=0.23 Score=38.84 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHH
Q 037676 196 EVVVERRQRRMIKNRESAARSRARKQ 221 (267)
Q Consensus 196 e~~~erRqrR~ikNReSA~rSR~RKk 221 (267)
.....+-.||.-|||.+|++||+||.
T Consensus 61 Ql~lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 61 QLALIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHHHHhhhhHHHHHHcchhhc
Confidence 45567889999999999999999984
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.10 E-value=82 Score=29.23 Aligned_cols=53 Identities=17% Similarity=0.061 Sum_probs=40.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 205 RMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDI 257 (267)
Q Consensus 205 R~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~ 257 (267)
++.+=|+-+.+--...+.-++.|+++.+.|+.++.++..++++..+++++.+-
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 34444555667777778888888888888999999999988888888877654
No 60
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=55.45 E-value=85 Score=29.00 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERKRVQE 255 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~ 255 (267)
..+.||.+|.+-+...++|..++.+|..+.+++
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 430 LMASLDAEKAQGQKKVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665555566666666665555544
No 61
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=54.46 E-value=20 Score=26.76 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 218 ARKQAYTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 218 ~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
+.|.+.+.+||.++...+.+...|+.++..+
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3477789999999999999999998887654
No 62
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=54.43 E-value=22 Score=25.52 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
-..|-.+|.+|+..+.+..+++..|...
T Consensus 20 n~~L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 20 NVQLAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665555555555443
No 63
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=54.32 E-value=11 Score=27.62 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
..|+.++..|+.+|..|+.++..|
T Consensus 57 ~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 57 HTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666543
No 64
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=53.29 E-value=28 Score=34.83 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 215 RSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDI 257 (267)
Q Consensus 215 rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~ 257 (267)
.....+.+|.++||.++..|+++...-..+|+.|+.-..+++.
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~ 145 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLV 145 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777788888888777766666667766666666553
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.65 E-value=52 Score=31.17 Aligned_cols=30 Identities=33% Similarity=0.304 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 220 KQAYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 220 Kk~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
|++-++.|+.++..|+...+..++++.++.
T Consensus 535 ~~~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 535 KQKETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 334444445555555554444444444443
No 66
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.31 E-value=1.1e+02 Score=28.94 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 037676 233 QLKAENDKLKEAVK 246 (267)
Q Consensus 233 ~L~~EN~~L~~~l~ 246 (267)
.|++|..+|+++++
T Consensus 541 ~~~~~~~~le~~~~ 554 (597)
T 3oja_B 541 DLEQENIALEKQLD 554 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHhhhHHHHHHHh
Confidence 33344444444333
No 67
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=51.60 E-value=8.2 Score=26.98 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLK 242 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~ 242 (267)
..|+.+||.+|..|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4788999999988887665543
No 68
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=50.80 E-value=60 Score=22.61 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 199 VERRQRRMIKNRESAARSRARK---QAYTVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 199 ~erRqrR~ikNReSA~rSR~RK---k~y~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
+.||++=.+.-+.|-.+-..+= ..-+++|+.+...|..+...|+.++..|..
T Consensus 3 errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 3 ERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554444444444444333 234567777778888888888887776644
No 69
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=50.48 E-value=1.2e+02 Score=26.66 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQATEDG 263 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~~~~ 263 (267)
...++.|+.++..|++||..|+.-...++ +--.+|++|..+
T Consensus 121 h~~ie~l~eEi~~LkeEn~eLkeLae~~q--~la~vi~~l~~~ 161 (209)
T 2wvr_A 121 HKEIEQKDNEIARLKKENKELAEVAEHVQ--YMAELIERLNGE 161 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcC
Confidence 34477788888888888888887433332 223445555443
No 70
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=49.51 E-value=74 Score=23.26 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
-+.+|+.....|..||..|+.++..|..+.
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888889999999999999887663
No 71
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=49.02 E-value=64 Score=22.38 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 037676 218 ARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQATEDGK 264 (267)
Q Consensus 218 ~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~~~~~ 264 (267)
+||.+.+++|. .|++++..|+.++=.=.-.+-+.-++.+.+|+
T Consensus 6 rrr~e~ld~l~----~LEkqF~~LkEqlY~ERl~ql~~~Leel~~g~ 48 (49)
T 2xus_A 6 RRRSECVSEML----DLEKQFSELKEKLFRERLSQLRLRLEEVGAER 48 (49)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 56666666554 56677777776553322333333455565553
No 72
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=48.84 E-value=27 Score=28.21 Aligned_cols=36 Identities=8% Similarity=0.043 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037676 225 VELELELTQLKAENDKLKEAVKELERKRVQEDIQAT 260 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~ 260 (267)
++|..+|..|.+|+..|+++++.|..+......+.+
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l 63 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLWADIL 63 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377788888888888888888888877665554444
No 73
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=47.95 E-value=86 Score=23.57 Aligned_cols=40 Identities=8% Similarity=0.112 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 218 ARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQEDI 257 (267)
Q Consensus 218 ~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~ 257 (267)
..=+..++.|..+|..|+-.++.+..+++.+.+.+++...
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567777788888888888888888888777766543
No 74
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=46.46 E-value=31 Score=29.78 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
..+.+|..++.+|+++|++|+++.....+.
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999999999998776544
No 75
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=46.27 E-value=43 Score=21.14 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
.||.++..|..--.+|.+++..|++..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777776653
No 76
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=46.08 E-value=75 Score=22.38 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
-+++|+.+...|+.+...|+.++..|.
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777666654
No 77
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=45.56 E-value=43 Score=24.58 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 219 RKQAYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 219 RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
.|.+.+.+||..+..=..|+.+|+.++..+.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888999999999998999999998876654
No 78
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.13 E-value=32 Score=25.84 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037676 227 LELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 227 LE~~v~~L~~EN~~L~~~l~~L 248 (267)
|+.++..|+.+|..|+.++++|
T Consensus 64 l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 64 LISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455666666666666655
No 79
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=44.94 E-value=47 Score=25.31 Aligned_cols=30 Identities=30% Similarity=0.307 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+.+.+.|.+...|+..|..|..++++|+..
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 445567778888888899999888888654
No 80
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=44.54 E-value=95 Score=23.10 Aligned_cols=65 Identities=23% Similarity=0.319 Sum_probs=45.0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 187 RKRIIDGPHEVVVERRQRRMIKNRESAARSRARKQ---AYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 187 rk~~~~~~~e~~~erRqrR~ikNReSA~rSR~RKk---~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+|+.+|...+.-.+||.|==+.=|-|-...|.|-. ..+++|+.+...|+.+...|..++..|...
T Consensus 5 ~kk~~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 5 AKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCcccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666677777766666666666665544 457789999999999999999998887643
No 81
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=44.41 E-value=55 Score=24.29 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037676 229 LELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 229 ~~v~~L~~EN~~L~~~l~~L 248 (267)
.++..++.+|..|+.++..+
T Consensus 7 ~kLq~~E~~N~~Le~~v~~l 26 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEM 26 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 33444444444444444333
No 82
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=42.85 E-value=15 Score=29.17 Aligned_cols=54 Identities=30% Similarity=0.319 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Q 037676 196 EVVVERRQRRMIKNRESAARSR-----------------ARKQAYTVELELELTQLKAE----------NDKLKEAVKEL 248 (267)
Q Consensus 196 e~~~erRqrR~ikNReSA~rSR-----------------~RKk~y~~eLE~~v~~L~~E----------N~~L~~~l~~L 248 (267)
....||+.|-.|..+-.+-++= .+--+|+..|+.++..|+++ |..|..++++|
T Consensus 31 Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~~riqeL 110 (118)
T 4ati_A 31 HNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQEL 110 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778787888877765542 12346888888777665544 55555555555
Q ss_pred H
Q 037676 249 E 249 (267)
Q Consensus 249 ~ 249 (267)
+
T Consensus 111 E 111 (118)
T 4ati_A 111 E 111 (118)
T ss_dssp -
T ss_pred H
Confidence 4
No 83
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=42.62 E-value=8 Score=27.72 Aligned_cols=10 Identities=60% Similarity=0.959 Sum_probs=8.6
Q ss_pred ccccHHHHHH
Q 037676 29 CKKTVEEVWS 38 (267)
Q Consensus 29 s~KTVDEVWr 38 (267)
-.||||+||-
T Consensus 35 nakTVeGV~a 44 (56)
T 2jws_A 35 NAKTVEGVWT 44 (56)
T ss_dssp TCSCHHHHHH
T ss_pred cccccccccc
Confidence 4699999995
No 84
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=42.37 E-value=22 Score=22.75 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Q 037676 239 DKLKEAVKELERKRVQEDIQATEDGKK 265 (267)
Q Consensus 239 ~~L~~~l~~L~~~~k~~~~e~~~~~~~ 265 (267)
+.-++++.-|..+-+++++|.+..+|.
T Consensus 5 eqakkeiaylikkakeeileeikkakq 31 (35)
T 2o6n_A 5 EQAKKEIAYLIKKAKEEILEEIKKAKQ 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777888888888876654
No 85
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=41.71 E-value=31 Score=22.38 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
.....+..|+..|..|..++..|
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHHHHhc
Confidence 34556667777788877776554
No 86
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=40.95 E-value=63 Score=22.37 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
-++.|+.+...|..+...|+.++..|...
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777778888888888777776543
No 87
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.18 E-value=1.5e+02 Score=24.09 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
.+.+|+.++..|..+......+++.|
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erl 97 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566655555544444444333333
No 88
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=39.93 E-value=30 Score=25.63 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKEAVKE 247 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l~~ 247 (267)
.|+.+...|+.+|..|+.+++.
T Consensus 58 ~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 58 KAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4555556666666666666553
No 89
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=39.63 E-value=55 Score=22.76 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKELERKRV 253 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L~~~~k 253 (267)
..||.-|..|+..|..|.+.+..|+....
T Consensus 20 aklenivarlendnanlekdianlekdia 48 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIA 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 35777788888888888888888876543
No 90
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=39.52 E-value=1.3e+02 Score=23.05 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=18.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 207 IKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 207 ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
-.-||+|...+-=++.-.+.|..=-..|.+|....+.+|+.|+
T Consensus 22 FgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le 64 (84)
T 1gmj_A 22 FGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQ 64 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777766532222223333222223344444444444443
No 91
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=39.44 E-value=70 Score=24.26 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 037676 232 TQLKAENDK 240 (267)
Q Consensus 232 ~~L~~EN~~ 240 (267)
..|+++|..
T Consensus 30 eELKekN~~ 38 (81)
T 2jee_A 30 EELKEKNNS 38 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 92
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=39.19 E-value=57 Score=26.13 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERKRVQED 256 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~ 256 (267)
-+.+|+.++..++..|.+|++-..+...+.++.|
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav 38 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVFQTKIQEFRKAC 38 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888887777766666655
No 93
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=38.79 E-value=83 Score=23.84 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 037676 234 LKAENDKLKEAVKEL 248 (267)
Q Consensus 234 L~~EN~~L~~~l~~L 248 (267)
|..||..|+.+....
T Consensus 53 L~~en~qLk~E~~~w 67 (81)
T 2jee_A 53 LERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444455444444
No 94
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=37.93 E-value=69 Score=25.78 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037676 229 LELTQLKAENDKLKEAVKELERKRVQEDIQATE 261 (267)
Q Consensus 229 ~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~~ 261 (267)
.++..|++||....+++.+..++ ++.+++.+.
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e-~e~ll~~v~ 123 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKK-KEKLMRHVD 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45556666666666655554333 444444443
No 95
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=37.78 E-value=47 Score=25.42 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 227 LELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 227 LE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
|..+|..|++|+..|+..+.+|.
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544443
No 96
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=37.75 E-value=69 Score=27.02 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037676 216 SRARKQAYTVELELELTQL 234 (267)
Q Consensus 216 SR~RKk~y~~eLE~~v~~L 234 (267)
+-++|++|+.+|..+...+
T Consensus 20 rI~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 20 RIKQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3367999999999876543
No 97
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=36.77 E-value=82 Score=25.59 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 037676 236 AENDKLKEAVKEL 248 (267)
Q Consensus 236 ~EN~~L~~~l~~L 248 (267)
.++..|++++.+|
T Consensus 110 ~e~~~l~~~~~~l 122 (138)
T 3hnw_A 110 KEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 98
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=36.71 E-value=1.4e+02 Score=22.72 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 219 RKQAYTVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 219 RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+=+.-...++.++...+..|..|..+++.|+++
T Consensus 35 ~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~ 67 (81)
T 1wt6_A 35 AIRTDNQNFASQLREAEARNRDLEAHVRQLQER 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666677777776666555444
No 99
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=36.47 E-value=72 Score=26.41 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037676 229 LELTQLKAENDKLKEAVKELERKRVQEDIQAT 260 (267)
Q Consensus 229 ~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~ 260 (267)
.++..|++||....+++.+..++ ++.+++.+
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~e-ae~ll~~v 122 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIKK-KEKLLRHV 122 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45556666666666655554332 34444443
No 100
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=35.93 E-value=29 Score=30.18 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEA 244 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~ 244 (267)
+.+|+++..+|.+||++|.++
T Consensus 163 i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 163 IAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
No 101
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=35.74 E-value=21 Score=27.11 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=20.0
Q ss_pred cccccHHHHHHHHHhccCCCcCCCCCCCCCCCCCCcchHHHHHhh
Q 037676 28 LCKKTVEEVWSEIQKDQQPQRRCHVEPPQRQPTFGEITLEEFLVK 72 (267)
Q Consensus 28 Ls~KTVDEVWrdI~~~~~~~~~~~~~~~~RQ~TLGEMTLEdFLVr 72 (267)
++...++++|+++-.+ -=|.++++||+.-
T Consensus 53 l~~~el~~i~~~~D~d----------------~dG~I~~~EF~~~ 81 (110)
T 1iq3_A 53 LSIPELSYIWELSDAD----------------CDGALTLPEFCAA 81 (110)
T ss_dssp CSSCCHHHHHHHHCSS----------------SCSEEEHHHHHHH
T ss_pred CCHHHHHHHHHHHcCC----------------CCCcCcHHHHHHH
Confidence 5667788888766322 1278999999764
No 102
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=34.82 E-value=2e+02 Score=28.00 Aligned_cols=34 Identities=12% Similarity=0.018 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELERKRVQED 256 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~ 256 (267)
-.++|-.++..|+++...|..++.+++++....+
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777777777766655444
No 103
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=34.20 E-value=55 Score=19.95 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037676 233 QLKAENDKLKEAVKELERK 251 (267)
Q Consensus 233 ~L~~EN~~L~~~l~~L~~~ 251 (267)
.|+-||..|.+++..|.++
T Consensus 4 alefendaleqkiaalkqk 22 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQK 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHH
Confidence 4666677777666666554
No 104
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=33.56 E-value=1.8e+02 Score=27.56 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 198 VVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQED 256 (267)
Q Consensus 198 ~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~ 256 (267)
..+|.+.+..+-+..|..++..-+..+..++..-.....+-..+-..+++|++++-..+
T Consensus 186 ~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~l 244 (486)
T 3haj_A 186 QLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFF 244 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555544444555544334444444455555555555544443
No 105
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=33.24 E-value=96 Score=23.53 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037676 229 LELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 229 ~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
.+|..|+.+|..|..++..+..
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3566666666666666655543
No 106
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=32.90 E-value=81 Score=19.60 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
+-||.+...|+.....|.++++.|
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666555555555544
No 107
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=32.05 E-value=87 Score=23.82 Aligned_cols=23 Identities=22% Similarity=0.279 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKE 243 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~ 243 (267)
-+|+..|..++..+.++..++++
T Consensus 38 vdYI~~Lq~e~~r~~e~e~r~k~ 60 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLENRQKK 60 (83)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888887777766665
No 108
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.76 E-value=80 Score=24.30 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 037676 215 RSRARKQAYTVELEL----ELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 215 rSR~RKk~y~~eLE~----~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
|-+-|.+-|...=-. +...|+.++..|..+++.|.++
T Consensus 30 RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e 70 (90)
T 2wt7_B 30 RRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQE 70 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555443322 1234666666666666665544
No 109
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=31.53 E-value=92 Score=22.16 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
.|-.+|..|+.||..|++-+++=
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeE 36 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEE 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888876653
No 110
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=31.33 E-value=16 Score=27.03 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=22.5
Q ss_pred cccccHHHHHHHHHhccCCCcCCCCCCCCCCCCCCcchHHHHHhhhcc
Q 037676 28 LCKKTVEEVWSEIQKDQQPQRRCHVEPPQRQPTFGEITLEEFLVKAGV 75 (267)
Q Consensus 28 Ls~KTVDEVWrdI~~~~~~~~~~~~~~~~RQ~TLGEMTLEdFLVrAGV 75 (267)
|+..+++++|+.+-.+. =|.++++||+.--..
T Consensus 42 l~~~~l~~i~~~~D~d~----------------dG~i~~~EF~~~~~~ 73 (99)
T 1qjt_A 42 LPDLILGKIWDLADTDG----------------KGVLSKQEFFVALRL 73 (99)
T ss_dssp SCHHHHHHHHHHHCCSS----------------SSSCCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCC----------------CCcCCHHHHHHHHHH
Confidence 56778899998773321 278999999865433
No 111
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=30.96 E-value=1.3e+02 Score=20.64 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 211 ESAARSRARKQAYTVELELELTQLKAENDKLKEAVK 246 (267)
Q Consensus 211 eSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~ 246 (267)
|-|-||=.|-+.-++.||.++..-++++..+...+.
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566777777777777777766666666655555443
No 112
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.93 E-value=1.2e+02 Score=22.61 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 228 ELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 228 E~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+.++..|+..-..+..++.+++..
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555444433
No 113
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=30.74 E-value=37 Score=22.26 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037676 229 LELTQLKAENDKLKEAVK 246 (267)
Q Consensus 229 ~~v~~L~~EN~~L~~~l~ 246 (267)
.+|..|+.+|..|..++.
T Consensus 20 dkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578889999999988764
No 114
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=30.59 E-value=1e+02 Score=23.52 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVKELERKRVQEDIQATE 261 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e~~~ 261 (267)
..-++.++.++..|+++|..|+.-.... .+--.+|++|.
T Consensus 44 h~~ie~~~eEi~~Lk~en~~L~elA~~~--q~la~~i~~L~ 82 (83)
T 1wlq_A 44 HKEIEQKDSEIARLRKENKDLAEVAEHV--QYMAEVIERLS 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHH--HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhc
Confidence 3446666777777777777777632221 23344566553
No 115
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=30.20 E-value=1e+02 Score=19.34 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
.|..++..|+.|...|+=++..|.+
T Consensus 6 alkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3555566666666666666555543
No 116
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=29.79 E-value=1.5e+02 Score=21.98 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=14.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 037676 207 IKNRESAARSRARKQAYTVELE 228 (267)
Q Consensus 207 ikNReSA~rSR~RKk~y~~eLE 228 (267)
-+|+..|-.+=+|||-|=..|+
T Consensus 41 ~knK~~Al~aLkrKK~~E~qL~ 62 (79)
T 4abm_A 41 TKNKRAALQALKRKKRYEKQLA 62 (79)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHhHHHHHHH
Confidence 5677777777777777744443
No 117
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.71 E-value=18 Score=27.91 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=30.1
Q ss_pred cccCcccccccHHHHHHHHHhccCCCcCCCCCCCCCCC----CCCcchHHHHHhhhcc
Q 037676 22 FSIPILLCKKTVEEVWSEIQKDQQPQRRCHVEPPQRQP----TFGEITLEEFLVKAGV 75 (267)
Q Consensus 22 lTLpr~Ls~KTVDEVWrdI~~~~~~~~~~~~~~~~RQ~----TLGEMTLEdFLVrAGV 75 (267)
|.||..-..=|.+.||.=|.-......-.... ..+.+ .|=.||.|||+.+|+.
T Consensus 18 l~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~-~~~f~m~G~~LC~lskedF~~~~p~ 74 (96)
T 2dkx_A 18 LNITADPMDWSPSNVQKWLLWTEHQYRLPPMG-KAFQELAGKELCAMSEEQFRQRSPL 74 (96)
T ss_dssp TTCCSCGGGCCSSTHHHHHHHHHHHTTCCCCH-HHHSSCCHHHHHHSCHHHHHHHCSS
T ss_pred cCCCCChhhCCHHHHHHHHHHHHHhcCCCCCC-cccCCCCHHHHHhCCHHHHHHHcCc
Confidence 55777777777777776554321111000111 12233 4667999999999863
No 118
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=29.34 E-value=52 Score=28.64 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
..|..++..|+.++..|..+++++
T Consensus 142 ~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 142 EHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333
No 119
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.23 E-value=1.2e+02 Score=19.82 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKE 247 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~ 247 (267)
.+++|..+...|+.|-.+|+.-+.+
T Consensus 9 kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 9 EVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 4567777777777777777765543
No 120
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=29.07 E-value=80 Score=19.08 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037676 227 LELELTQLKAENDKLKEAV 245 (267)
Q Consensus 227 LE~~v~~L~~EN~~L~~~l 245 (267)
|..+|-.|+-|-..|+.+.
T Consensus 5 lkdevgelkgevralkdev 23 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHH
Confidence 3444444444444444333
No 121
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=28.56 E-value=18 Score=27.33 Aligned_cols=54 Identities=11% Similarity=-0.083 Sum_probs=32.5
Q ss_pred cccCcccccccHHHHHHHHHhccCCCcCCCCC---CCCCCCCCCcchHHHHHhhhcc
Q 037676 22 FSIPILLCKKTVEEVWSEIQKDQQPQRRCHVE---PPQRQPTFGEITLEEFLVKAGV 75 (267)
Q Consensus 22 lTLpr~Ls~KTVDEVWrdI~~~~~~~~~~~~~---~~~RQ~TLGEMTLEdFLVrAGV 75 (267)
+.||..-..=|.+.|+.=|.=......-.... ..---..|=.||.|||+.+|+.
T Consensus 4 ~~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~~~F~m~G~~LC~ls~edF~~~~p~ 60 (85)
T 1sv0_A 4 PSLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG 60 (85)
T ss_dssp TTSCSSGGGCCHHHHHHHHHHHHHHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHSTT
T ss_pred CCCCCChhhCCHHHHHHHHHHHHHccCCCCCChhhCCCCHHHHHcCCHHHHHHHcCC
Confidence 56788888889999987665321111100111 0111235678999999999973
No 122
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=28.00 E-value=24 Score=26.71 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=21.6
Q ss_pred cccccHHHHHHHHHhccCCCcCCCCCCCCCCCCCCcchHHHHHhhh
Q 037676 28 LCKKTVEEVWSEIQKDQQPQRRCHVEPPQRQPTFGEITLEEFLVKA 73 (267)
Q Consensus 28 Ls~KTVDEVWrdI~~~~~~~~~~~~~~~~RQ~TLGEMTLEdFLVrA 73 (267)
|+..+++++|+.+-.+. =|.++++||++--
T Consensus 45 l~~~el~~i~~~~D~d~----------------dG~id~~EF~~~m 74 (106)
T 1eh2_A 45 LPVDILGRVWELSDIDH----------------DGMLDRDEFAVAM 74 (106)
T ss_dssp CCHHHHHHHHHHHCSSC----------------SSBCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCC----------------CCcCcHHHHHHHH
Confidence 56778999999763321 2779999997643
No 123
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=27.97 E-value=59 Score=21.87 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEA 244 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~ 244 (267)
++||.++..|+.....|.+.
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555544444444443
No 124
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=27.82 E-value=1.5e+02 Score=26.93 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=24.5
Q ss_pred cCcccccc-cHHHHHHHHHhc--cCCCcCCCCCCCCCCCCCCcchHHHHH
Q 037676 24 IPILLCKK-TVEEVWSEIQKD--QQPQRRCHVEPPQRQPTFGEITLEEFL 70 (267)
Q Consensus 24 Lpr~Ls~K-TVDEVWrdI~~~--~~~~~~~~~~~~~RQ~TLGEMTLEdFL 70 (267)
=||+|+-| .+-+.|+.|..- .... ..+-..-||=.+|.-||.
T Consensus 4 DpRpl~Dk~~q~~~~~~i~~fL~~~~~-----~~~is~k~L~~Pt~KdF~ 48 (315)
T 2ve7_A 4 DPRPLNDKAFIQQCIRQLCEFLTENGY-----AHNVSMKSLQAPSVKDFL 48 (315)
T ss_dssp CCSCTTCHHHHHHHHHHHHHHHHHTTC-----SSCCCTGGGSSCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCC-----CCCCCcccCCCCCHHHHH
Confidence 38998877 788888888752 1111 011123456666777764
No 125
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=27.63 E-value=1.4e+02 Score=22.26 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
..-+..|+.++..++.+...|+..+.++
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666655544
No 126
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.40 E-value=1.2e+02 Score=27.85 Aligned_cols=8 Identities=50% Similarity=0.397 Sum_probs=4.0
Q ss_pred ccHHHHHH
Q 037676 31 KTVEEVWS 38 (267)
Q Consensus 31 KTVDEVWr 38 (267)
+|-||++.
T Consensus 141 ~Twdel~~ 148 (471)
T 3mq9_A 141 KTWEEIPA 148 (471)
T ss_dssp SBGGGHHH
T ss_pred CCHHHHHH
Confidence 45555554
No 127
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.10 E-value=2.1e+02 Score=26.98 Aligned_cols=24 Identities=33% Similarity=0.126 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKE 247 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~ 247 (267)
.++|+.++.+++.++..+++++.+
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 19 TEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666665554
No 128
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=27.07 E-value=99 Score=29.17 Aligned_cols=35 Identities=23% Similarity=0.123 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLKEAVKELERKRVQED 256 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~ 256 (267)
+-.++|-.++..|+++...|..++.+++++....+
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777788888888887777777665544
No 129
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=26.70 E-value=1.1e+02 Score=26.93 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=18.4
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQ---LKAENDKLKEAVKELERK 251 (267)
Q Consensus 223 y~~eLE~~v~~---L~~EN~~L~~~l~~L~~~ 251 (267)
.+.+||.++.. .-.+|..+-.++..+...
T Consensus 80 r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~ 111 (252)
T 3e98_A 80 RNIEMRHRLSQLMDVARENDRLFDKTRRLVLD 111 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666644 466788888877766543
No 130
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=26.62 E-value=3.4e+02 Score=24.06 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 197 VVVERRQRRMIKNRESAARSRARKQAYTVELELELTQLKAENDKLKEAVKELERKRVQ 254 (267)
Q Consensus 197 ~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~ 254 (267)
+..+|.+.++.+-+..+..++..-+..+..+..-.....++-..+-..++.+++.+-.
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~ 249 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLR 249 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777766655555555544444444444444445555544433
No 131
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=26.46 E-value=1.8e+02 Score=20.78 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhh
Q 037676 228 ELELTQLKAENDKLKEAVKELERKR--VQEDIQATE 261 (267)
Q Consensus 228 E~~v~~L~~EN~~L~~~l~~L~~~~--k~~~~e~~~ 261 (267)
|.++..|++.|..|-.+++.|+..+ +++-+||+.
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888888887777775433 444555553
No 132
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.29 E-value=2e+02 Score=34.55 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037676 220 KQAYTVELELELTQLKAENDK 240 (267)
Q Consensus 220 Kk~y~~eLE~~v~~L~~EN~~ 240 (267)
+++-+.+||.++..|+++-+.
T Consensus 2033 ~~~~L~~le~~l~~L~~~~~~ 2053 (3245)
T 3vkg_A 2033 IVATITALEKSIATYKEEYAT 2053 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 133
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.11 E-value=1.2e+02 Score=20.40 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKE 247 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~ 247 (267)
+.-||.++..|+.....|+.+++.
T Consensus 22 laaleselqalekklaalksklqa 45 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555443
No 134
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=26.07 E-value=26 Score=24.70 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037676 220 KQAYTVELELELTQLKAENDKL 241 (267)
Q Consensus 220 Kk~y~~eLE~~v~~L~~EN~~L 241 (267)
+..|++.|+.+|..||.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999998887665544
No 135
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=25.78 E-value=1.2e+02 Score=24.43 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 219 RKQAYTVELELELTQLKAENDKLKEAV 245 (267)
Q Consensus 219 RKk~y~~eLE~~v~~L~~EN~~L~~~l 245 (267)
+.++....++.++..|.++.++|++++
T Consensus 135 ~~~~~~~~l~~~i~~L~~~l~~le~~~ 161 (166)
T 3pjs_K 135 SEKAAEEAYTRTTRALHERFDRLERML 161 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666665554
No 136
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.70 E-value=20 Score=27.76 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=34.4
Q ss_pred ccccccCcccccccHHHHHHHHHhccCCCcCCCCCCCCC-C----CCCCcchHHHHHhhhccc
Q 037676 19 QNSFSIPILLCKKTVEEVWSEIQKDQQPQRRCHVEPPQR-Q----PTFGEITLEEFLVKAGVV 76 (267)
Q Consensus 19 QgSlTLpr~Ls~KTVDEVWrdI~~~~~~~~~~~~~~~~R-Q----~TLGEMTLEdFLVrAGVV 76 (267)
|--+-+|..-..=|.+.||.=|.=......-.... .++ | ..|=.||.|||+.+|+-+
T Consensus 15 ~~rl~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v~-~~~F~~m~G~~LC~ls~edF~~~~~~~ 76 (98)
T 1x66_A 15 ERRVIVPADPTLWTQEHVRQWLEWAIKEYSLMEID-TSFFQNMDGKELCKMNKEDFLRATTLY 76 (98)
T ss_dssp SSCCCCCSSGGGCCTTHHHHHHHHHHHHTTCCSCC-GGGGTTCCHHHHHHCCHHHHHTTSCHH
T ss_pred ceecCCCCChhhcCHHHHHHHHHHHHHhcCCCCCC-hhhCCCCCHHHHHcCCHHHHHHHcCCC
Confidence 44577888888889999987665321111100111 112 1 246679999999998653
No 137
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=25.60 E-value=1.7e+02 Score=23.04 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
...|.++..|++++.+|++++....
T Consensus 14 ~~~e~e~~~l~~~~~el~~~l~~~~ 38 (125)
T 1joc_A 14 LKGEGEIEKLQTKVLELQRKLDNTT 38 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666665543
No 138
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=25.31 E-value=1.3e+02 Score=28.80 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERKRVQED 256 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~ 256 (267)
.++|-.++..|+++...|..++.+++++..+.+
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 71 VDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777776665544
No 139
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=25.16 E-value=1.4e+02 Score=25.60 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 213 AARSRARKQAYTVELELELTQLKAENDKLKEAVK 246 (267)
Q Consensus 213 A~rSR~RKk~y~~eLE~~v~~L~~EN~~L~~~l~ 246 (267)
|-++-.+-++-++.||.++...++++..+.+.+.
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666777777777777777666666553
No 140
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.83 E-value=1.8e+02 Score=21.40 Aligned_cols=21 Identities=10% Similarity=0.409 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037676 229 LELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 229 ~~v~~L~~EN~~L~~~l~~L~ 249 (267)
.++..|+..-..+..++.+++
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 141
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=24.44 E-value=2.2e+02 Score=21.20 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037676 197 VVVERRQRRMIKNRESAARSRARKQAYTVELELELTQL----KAENDKLKEAVKELERKRVQEDIQATEDG 263 (267)
Q Consensus 197 ~~~erRqrR~ikNReSA~rSR~RKk~y~~eLE~~v~~L----~~EN~~L~~~l~~L~~~~k~~~~e~~~~~ 263 (267)
+..|.+..||..+ ++-|..++++| +.-...|++++..|+...+...-+.++++
T Consensus 3 ~dlEEKv~~LE~s--------------ld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~~~~s~~ 59 (74)
T 3swf_A 3 MGLEEKVTRMESS--------------VDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLIDTEFSAI 59 (74)
T ss_dssp -CHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhhc
No 142
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=24.15 E-value=70 Score=24.79 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
.|+.+...|+++...|+++++.|
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L 33 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARL 33 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 143
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=24.13 E-value=74 Score=28.02 Aligned_cols=21 Identities=48% Similarity=0.635 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEA 244 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~ 244 (267)
+.....++..|+.||.+|++-
T Consensus 38 l~~~~~~~~~l~~En~rLr~l 58 (255)
T 2j5u_A 38 LAQLESEVADLKKENKDLKES 58 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666677666654
No 144
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=24.09 E-value=1.6e+02 Score=28.73 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERKRVQED 256 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~ 256 (267)
.++|-.++..|+++...|..++.+++++....+
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777776665544
No 145
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.68 E-value=2.3e+02 Score=21.02 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 220 KQAYTVELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 220 Kk~y~~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
|-+-+...+..+..|+.+..+....+.+|..
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555443
No 146
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.63 E-value=92 Score=28.14 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 223 YTVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 223 y~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
.+..|+.+...|+++...+++++..|+
T Consensus 62 ql~~L~arNe~L~~~Lk~ar~El~~Lk 88 (251)
T 3m9b_A 62 RIDSLAARNSKLMETLKEARQQLLALR 88 (251)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 147
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.31 E-value=2.2e+02 Score=23.04 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037676 230 ELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 230 ~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
+|..|+.|+..|.++|.+...+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae 93 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAE 93 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666655443
No 148
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=23.27 E-value=78 Score=22.42 Aligned_cols=21 Identities=24% Similarity=0.067 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDKLK 242 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~L~ 242 (267)
.|+..||.++..|+.....|.
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 488889998888887766654
No 149
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*
Probab=23.14 E-value=27 Score=27.57 Aligned_cols=54 Identities=19% Similarity=-0.024 Sum_probs=33.7
Q ss_pred ccccCcccccccHHHHHHHHHhccCCCcCCCCCCCCCCC----CCCcchHHHHHhhhcc
Q 037676 21 SFSIPILLCKKTVEEVWSEIQKDQQPQRRCHVEPPQRQP----TFGEITLEEFLVKAGV 75 (267)
Q Consensus 21 SlTLpr~Ls~KTVDEVWrdI~~~~~~~~~~~~~~~~RQ~----TLGEMTLEdFLVrAGV 75 (267)
-+.||..-..=|.+.||.=|.=-.....-.... ..+-+ .|=.||.|||+.+|+.
T Consensus 34 rl~ip~DP~~WS~~~V~~WL~W~~~ef~L~~v~-~~~F~m~G~~LC~ls~edF~~~~p~ 91 (110)
T 2jv3_A 34 RLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVD-FQKFCMSGAALCALGKECFLELAPD 91 (110)
T ss_dssp HTTCCSSSTTCCHHHHHHHHHHHHHHHTCCCCC-TTTTCCCHHHHHHTHHHHHHHHSCH
T ss_pred HhCCCCChHhCCHHHHHHHHHHHHHhcCCCCCC-hhcCCCCHHHHHhCCHHHHHHHcCC
Confidence 477899999999999987665321111000111 12222 4557999999999974
No 150
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=23.07 E-value=2.2e+02 Score=22.39 Aligned_cols=31 Identities=23% Similarity=0.406 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 218 ARKQAYTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 218 ~RKk~y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
.++|+.-.+-..+|..|+.|...|..+|.++
T Consensus 56 ~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 56 EKKVSQALEQQARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333444555555555555555544
No 151
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.96 E-value=2.4e+02 Score=21.16 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 221 QAYTVELELELTQLKAENDKLKEAVKEL 248 (267)
Q Consensus 221 k~y~~eLE~~v~~L~~EN~~L~~~l~~L 248 (267)
..-++.+..++..|++||..|+.-..+.
T Consensus 40 h~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 40 HKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777788888888877644443
No 152
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=22.74 E-value=27 Score=24.82 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=25.7
Q ss_pred ccCcccccccHHHHHHHHHhccCCCcCCCCCCCCCCCCCCcchHHHHHhhhc
Q 037676 23 SIPILLCKKTVEEVWSEIQKDQQPQRRCHVEPPQRQPTFGEITLEEFLVKAG 74 (267)
Q Consensus 23 TLpr~Ls~KTVDEVWrdI~~~~~~~~~~~~~~~~RQ~TLGEMTLEdFLVrAG 74 (267)
||...++.+.++++++.+.. =|.++++||+.-..
T Consensus 1 sl~~~~s~~ei~~~~~~~d~------------------~g~i~~~eF~~~~~ 34 (109)
T 5pal_A 1 PMTKVLKADDINKAISAFKD------------------PGTFDYKRFFHLVG 34 (109)
T ss_dssp CGGGTSCHHHHHHHHHHTCS------------------TTCCCHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHHhCC------------------CCcCcHHHHHHHHh
Confidence 45567888899999987721 37899999998653
No 153
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.67 E-value=1.9e+02 Score=27.08 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
..+|+.++..++.++.+|++++.+.+
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 19 IAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554433
No 154
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=22.64 E-value=32 Score=27.85 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=20.7
Q ss_pred cccccHHHHHHHHHhccCCCcCCCCCCCCCCCCCCcchHHHHHhhh
Q 037676 28 LCKKTVEEVWSEIQKDQQPQRRCHVEPPQRQPTFGEITLEEFLVKA 73 (267)
Q Consensus 28 Ls~KTVDEVWrdI~~~~~~~~~~~~~~~~RQ~TLGEMTLEdFLVrA 73 (267)
|+...++++|+.+-.+. =|.++++||++--
T Consensus 81 l~~~el~~I~~~~D~d~----------------dG~Ld~~EF~~am 110 (139)
T 2jq6_A 81 LPNTVLGKIWKLADVDK----------------DGLLDDEEFALAN 110 (139)
T ss_dssp CCHHHHHHHHHHHCSSC----------------CSEEEHHHHHHHH
T ss_pred cCHHHHHHHHHHhCCCC----------------CCcCcHHHHHHHH
Confidence 55677888888763321 2779999997643
No 155
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=22.62 E-value=22 Score=26.88 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERK 251 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~ 251 (267)
++.|..++..|++.|..|..+..-|+..
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666777766666665555443
No 156
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1
Probab=22.52 E-value=29 Score=25.69 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=32.6
Q ss_pred cccccCcccccccHHHHHHHHHhccCCCc-C-CCCCCCCCCC----CCCcchHHHHHhhhc
Q 037676 20 NSFSIPILLCKKTVEEVWSEIQKDQQPQR-R-CHVEPPQRQP----TFGEITLEEFLVKAG 74 (267)
Q Consensus 20 gSlTLpr~Ls~KTVDEVWrdI~~~~~~~~-~-~~~~~~~RQ~----TLGEMTLEdFLVrAG 74 (267)
|.|.+|..-..=|.++|+.=|.-.....+ + ... ...+.+ .|=.||.|||+.|++
T Consensus 3 ~~l~i~~dP~~Ws~~~V~~WL~w~~~e~~l~l~~~-~~~~f~m~G~~Lc~ls~edF~~~~p 62 (82)
T 1sv0_C 3 GSDGLPLDPRDWTRADVWKWLINMAVSEGLEVTAE-LPQKFPMNGKALCLMSLDMYLCRVP 62 (82)
T ss_dssp CTTSSBSSGGGCCHHHHHHHHHHHHHHHTCCCCTH-HHHTCCSCHHHHHHCCHHHHHHHCT
T ss_pred hhccCCCChhhCCHHHHHHHHHHHHHHhCCCCCCC-ccccCCCCHHHHHhCCHHHHHhhCC
Confidence 56788888888999999765542110000 0 000 011223 445799999999997
No 157
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=22.00 E-value=54 Score=22.98 Aligned_cols=16 Identities=44% Similarity=0.451 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 037676 214 ARSRARKQAYTVELEL 229 (267)
Q Consensus 214 ~rSR~RKk~y~~eLE~ 229 (267)
-.||.-|++|+.+|-.
T Consensus 15 ~LS~~~K~sYi~~L~~ 30 (53)
T 1r4g_A 15 PLSRAEKAAYVKSLSK 30 (53)
T ss_dssp CCCSHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHH
Confidence 3578889999999963
No 158
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Probab=21.87 E-value=28 Score=26.57 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=34.1
Q ss_pred ccccccCcccccccHHHHHHHHHhccCCCcCCCCCCCCCC----CCCCcchHHHHHhhhc
Q 037676 19 QNSFSIPILLCKKTVEEVWSEIQKDQQPQRRCHVEPPQRQ----PTFGEITLEEFLVKAG 74 (267)
Q Consensus 19 QgSlTLpr~Ls~KTVDEVWrdI~~~~~~~~~~~~~~~~RQ----~TLGEMTLEdFLVrAG 74 (267)
|..|-||..-..=|.+.|+.=|.=-.....=.... ..+- ..|=.||.|||+.+++
T Consensus 14 ~~rl~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v~-~~~f~m~G~~LC~ls~edF~~~~p 72 (91)
T 1sxd_A 14 QERLGIPYDPIHWSTDQVLHWVVWVMKEFSMTDID-LTTLNISGRELCSLNQEDFFQRVP 72 (91)
T ss_dssp HTTTTCCSSGGGCCHHHHHHHHHHHHHHTTCCCSC-SGGGCSCHHHHHHSCHHHHHHHCT
T ss_pred hHHhCCCCChhhCCHHHHHHHHHHHHHccCCCCCC-hhhCCCCHHHHHcCCHHHHHHHCC
Confidence 34688899999999999987655321111000111 1222 2455799999999985
No 159
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1
Probab=21.49 E-value=24 Score=27.21 Aligned_cols=56 Identities=9% Similarity=-0.012 Sum_probs=35.5
Q ss_pred ccccccCcccccccHHHHHHHHHhccCCCcCCCCCCCCC-----CCCCCcchHHHHHhhhcc
Q 037676 19 QNSFSIPILLCKKTVEEVWSEIQKDQQPQRRCHVEPPQR-----QPTFGEITLEEFLVKAGV 75 (267)
Q Consensus 19 QgSlTLpr~Ls~KTVDEVWrdI~~~~~~~~~~~~~~~~R-----Q~TLGEMTLEdFLVrAGV 75 (267)
|--+-||..-..=|.+.|+.=|.=......=.... ..+ -..|=.||.|||+.+++.
T Consensus 18 ~~rl~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~-~~~F~~m~G~~LC~lt~edF~~~~p~ 78 (97)
T 1sxe_A 18 ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVN-ILLFQNIDGKELCKMTKDDFQRLTPS 78 (97)
T ss_dssp TTSSSSCSSTTSCCHHHHHHHHHHHHHHHTCSSCC-GGGSTTCCHHHHTTCCHHHHTTTSCH
T ss_pred hhhhcCCcchhccCHHHHHHHHHHHHHhcCCCCCC-HHhcCCCCHHHHHhCCHHHHHHHcCC
Confidence 45688999999999999987665321111000111 112 235778999999999864
No 160
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=21.47 E-value=3.6e+02 Score=28.63 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.1
Q ss_pred cchHHHHHhhhcccCC
Q 037676 63 EITLEEFLVKAGVVQE 78 (267)
Q Consensus 63 EMTLEdFLVrAGVVrE 78 (267)
-|+.+||+-|=.+...
T Consensus 701 R~~~~eF~~RY~~L~~ 716 (1080)
T 2dfs_A 701 RWTYQEFFSRYRVLMK 716 (1080)
T ss_dssp EEEHHHHHHHHTTTSC
T ss_pred hhhHHHHHHHHHHHCC
Confidence 4899999999888753
No 161
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=21.23 E-value=3.6e+02 Score=22.53 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKELE 249 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L~ 249 (267)
+.|..++..|.-++..+..++..|+
T Consensus 99 e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 99 ERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 162
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.05 E-value=2.4e+02 Score=24.10 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKELERKR 252 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L~~~~ 252 (267)
..||.++..|++++...+.+...+.++.
T Consensus 138 ~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 138 AKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444444444443
No 163
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=20.87 E-value=1.5e+02 Score=23.59 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 229 LELTQLKAENDKLKEAVKELERKRVQEDIQ 258 (267)
Q Consensus 229 ~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e 258 (267)
.++..|+.+.+.+..+...|++-++..+.|
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~e 33 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQE 33 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888777776655
No 164
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.72 E-value=30 Score=28.15 Aligned_cols=58 Identities=12% Similarity=0.065 Sum_probs=36.0
Q ss_pred ccccccCcccccccHHHHHHHHHhccCCCcCCCCC---C-CCCCCCCCcchHHHHHhhhccc
Q 037676 19 QNSFSIPILLCKKTVEEVWSEIQKDQQPQRRCHVE---P-PQRQPTFGEITLEEFLVKAGVV 76 (267)
Q Consensus 19 QgSlTLpr~Ls~KTVDEVWrdI~~~~~~~~~~~~~---~-~~RQ~TLGEMTLEdFLVrAGVV 76 (267)
|-.+-+|..-..=|.+.||.=|.=......-.... . .---..|=.||.|||+.+++..
T Consensus 29 ~~rl~IP~DP~~WS~~~V~~WL~Wa~~ef~L~~id~~~Fq~mnGk~LC~LskeDF~~~~p~~ 90 (128)
T 2ytu_A 29 ERRVIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLY 90 (128)
T ss_dssp SSCCSCCSCGGGCCTTHHHHHHHHHHHHTCCCSCCCGGGSSCCTTHHHHCCHHHHHHHSCHH
T ss_pred hhhccCCcchhhCCHHHHHHHHHHHHHhcCCCCCChHhCCCCCHHHHHcCCHHHHHHHcCCC
Confidence 44677888888889999987665321111100111 1 1123457789999999999764
No 165
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.45 E-value=1.9e+02 Score=24.90 Aligned_cols=35 Identities=31% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 224 TVELELELTQLKAENDKLKEAVKELERKRVQEDIQ 258 (267)
Q Consensus 224 ~~eLE~~v~~L~~EN~~L~~~l~~L~~~~k~~~~e 258 (267)
++.+|.+...|+..|..|..++..+..++.+..-+
T Consensus 51 L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 51 LVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 166
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=20.44 E-value=38 Score=29.91 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 225 VELELELTQLKAENDKLKEAVKELER 250 (267)
Q Consensus 225 ~eLE~~v~~L~~EN~~L~~~l~~L~~ 250 (267)
..|.++...|++||..|+.++.++.+
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~~~~~ 47 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLESEVAD 47 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777776665544
No 167
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.38 E-value=77 Score=22.93 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037676 222 AYTVELELELTQLKAENDK 240 (267)
Q Consensus 222 ~y~~eLE~~v~~L~~EN~~ 240 (267)
.|+..||.++..|+.....
T Consensus 48 ~~~~~Le~rl~~le~~l~~ 66 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKE 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788898888887765443
No 168
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=20.26 E-value=2.9e+02 Score=20.99 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 220 KQAYTVELELELTQLKAENDKLKEAVKE 247 (267)
Q Consensus 220 Kk~y~~eLE~~v~~L~~EN~~L~~~l~~ 247 (267)
=...++.|+.++..|+.+|..|+.-...
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788888999999999988874443
No 169
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=20.15 E-value=41 Score=23.98 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=20.8
Q ss_pred cccccHHHHHHHHHhccCCCcCCCCCCCCCCCCCCcchHHHHHhhh
Q 037676 28 LCKKTVEEVWSEIQKDQQPQRRCHVEPPQRQPTFGEITLEEFLVKA 73 (267)
Q Consensus 28 Ls~KTVDEVWrdI~~~~~~~~~~~~~~~~RQ~TLGEMTLEdFLVrA 73 (267)
++...++++|+.+-.+ .=|.++++||+.-.
T Consensus 40 ~~~~~~~~i~~~~D~d----------------~dG~i~~~EF~~~~ 69 (92)
T 1fi6_A 40 LPILELSHIWELSDFD----------------KDGALTLDEFCAAF 69 (92)
T ss_dssp SCHHHHHHHHHHHCTT----------------CSSEEEHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCC----------------CCCCCCHHHHHHHH
Confidence 4566788888876322 13789999997643
No 170
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=20.12 E-value=6.2e+02 Score=24.96 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=6.1
Q ss_pred cchHHHHHhhh
Q 037676 63 EITLEEFLVKA 73 (267)
Q Consensus 63 EMTLEdFLVrA 73 (267)
.+|-.+||..+
T Consensus 195 ~~t~~eyLe~~ 205 (592)
T 1f5n_A 195 PLTPDEYLTYS 205 (592)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 35556666554
No 171
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=20.04 E-value=2.7e+02 Score=20.53 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 037676 231 LTQLKAENDKLKE 243 (267)
Q Consensus 231 v~~L~~EN~~L~~ 243 (267)
|..|..|+..|..
T Consensus 8 i~~l~~E~eel~~ 20 (71)
T 1s1c_X 8 IEILRRENEELTE 20 (71)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 172
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.04 E-value=2.4e+02 Score=22.15 Aligned_cols=28 Identities=4% Similarity=0.156 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037676 226 ELELELTQLKAENDKLKEAVKELERKRV 253 (267)
Q Consensus 226 eLE~~v~~L~~EN~~L~~~l~~L~~~~k 253 (267)
.+...+..|+.+...++..++.....+.
T Consensus 81 ~~q~~i~~lE~eL~~~r~em~~ql~EYq 108 (131)
T 3tnu_A 81 QIQEMIGSVEEQLAQLRCEMEQQNQEYK 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555666666666666665555543
Done!