BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037679
(693 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 173/676 (25%), Positives = 265/676 (39%), Gaps = 101/676 (14%)
Query: 6 LSTLYLQHNQLTGHIPV--EIRKLTQLQIVRLAENQLE--GSVPSSIFELRNLQALDLSN 61
L++L L N L+G + + + L+ + ++ N L+ G V S +L +L+ LDLS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV-SGGLKLNSLEVLDLSA 160
Query: 62 NNLSGT-VDXXXXXXXXXXXXXXXXSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY 120
N++SG V S NK+S + NL V +S N S
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDV---SSNNFSTGIP 217
Query: 121 FLHNQDELVSLDLSSNKIAGQ-DLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLS 179
FL + L LD+S NK++G + +++ L++ N+ GP+P L LQ L L+
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277
Query: 180 YNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALIL 239
N +G +P+ L L+ L L N+FY VP F + +L L
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF------------GSCSLLESLAL 325
Query: 240 KFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVK 299
NNF GE+ T + L+++DLS N F+G LP LT L
Sbjct: 326 SSNNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPES---------------LTNLSAS 369
Query: 300 LLPYDVLGFTYYGYADYSLTMSNKGTEIE-YLK-----------LSNL--IAAIIISDKN 345
LL D+ + G +L + K T E YL+ LSN + ++ +S
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 346 FVGEIPTSISSLKGLRTXXXXXXXXRGGAIPQGTQFSTFTNDWFAGNPGLCGEPLS--RK 403
G IP+S+ SL LR G IPQ + L GE S
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 404 CGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTG 463
C N W I L+ L GE P+ I +L NL L + N + +G
Sbjct: 489 CTN-----------------LNW-ISLSNN-RLTGEIPKWIGRLENLAILKLSNN-SFSG 528
Query: 464 YLP-QFQKSSLLEDLRLSYTRFSGKIPDSIEN---------LESLSYLGIS------DC- 506
+P + L L L+ F+G IP ++ + Y+ I +C
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588
Query: 507 ------SFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTL 560
F G L L+ ++ + + N S+ L++S S +
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648
Query: 561 QASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQ 620
+G++ L L + + +L L L+ L+ IP +S LT
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDE---VGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 621 LTALDLSYNQLTGPIP 636
LT +DLS N L+GPIP
Sbjct: 706 LTEIDLSNNNLSGPIP 721
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 121/469 (25%), Positives = 180/469 (38%), Gaps = 116/469 (24%)
Query: 14 NQLTGHIPVE-IRKLTQLQIVRLAENQLEGSVPSSIFELR-NLQALDLSNNNLSGTVDXX 71
N +G +P++ + K+ L+++ L+ N+ G +P S+ L +L LDLS+NN SG +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI--- 384
Query: 72 XXXXXXXXXXXXXXSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSL 131
N + L L N GF + P L N ELVSL
Sbjct: 385 ----------LPNLCQNPKNTLQELYLQNN-------GFTG----KIPPTLSNCSELVSL 423
Query: 132 DLSSNKIAGQDLLVL-PWSKMNTLDLGFNKLQGPLP--VPSLNGLQALDLSYNNLSGMLP 188
LS N ++G L SK+ L L N L+G +P + + L+ L L +N+L+G +P
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483
Query: 189 ECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEI 248
L N L+ + L N +P+ NL ++ SNNS G N E+
Sbjct: 484 SGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG--------NIPAEL 534
Query: 249 EEPQTGFEFPKLRIIDLSHNRFTGNLPSKHF--------------------------HCW 282
+ ++ L +DL+ N F G +P+ F C
Sbjct: 535 GDCRS------LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588
Query: 283 NA-----MKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKGT----EIEYLKLS 333
A + I + +L L + P ++ Y G+ S T N G+ ++ Y LS
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRN-PCNITSRVYGGHT--SPTFDNNGSMMFLDMSYNMLS 645
Query: 334 NLIAAII----------ISDKNFVGEIPTSISSLKGLRTXXXXXXXXRG----------- 372
I I + + G IP + L+GL G
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 373 ------------GAIPQGTQFSTFTNDWFAGNPGLCGEPLSRKCGNSEA 409
G IP+ QF TF F NPGLCG PL R C S A
Sbjct: 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPSNA 753
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 150/602 (24%), Positives = 223/602 (37%), Gaps = 167/602 (27%)
Query: 2 NLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSN 61
+ + L L + N+L+G I T+L+++ ++ NQ G +P L++LQ L L+
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAE 278
Query: 62 NNLSGTVDXXXXXXXXXXXXXXXXSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYF 121
N +G E P F
Sbjct: 279 NKFTG--------------------------------------------------EIPDF 288
Query: 122 LHNQ-DELVSLDLSSNKIAGQDLLVLPW----SKMNTLDLGFNKLQGPLPVPSL---NGL 173
L D L LDLS N G V P+ S + +L L N G LP+ +L GL
Sbjct: 289 LSGACDTLTGLDLSGNHFYGA---VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 174 QALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYR-IVPQTFMNGTNLMMIDFSNNSL 232
+ LDLS+N SG LPE L N S L L L +NNF I+P N N +
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL--------- 396
Query: 233 QGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPS--------KHFHCW-N 283
+ L L+ N F G+I P T +L + LS N +G +PS + W N
Sbjct: 397 --QELYLQNNGFTGKI--PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Query: 284 AMKDINASKLTY---LQVKLLPY-DVLGFTYYGYADYS----LTMSNKGTEIEYLK---- 331
++ +L Y L+ +L + D+ G G ++ + +++SN E K
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 332 LSNLIAAIIISDKNFVGEIPTSISSLKGLRTXXXXXXXXRGGAIP--------------- 376
L NL A + +S+ +F G IP + + L G IP
Sbjct: 513 LENL-AILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570
Query: 377 QGTQFSTFTNDWF------AGN----PGLCGEPLSR-----------KCGNSEASPVEDD 415
G ++ ND AGN G+ E L+R + SP D+
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630
Query: 416 PPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLE 475
S L + + L G P+EI +P L
Sbjct: 631 NGSMMFLDMSYNM-------LSGYIPKEIGSMPYLFI----------------------- 660
Query: 476 DLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDE 535
L L + SG IPD + +L L+ L +S G+IP ++ LT L + LS N
Sbjct: 661 -LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719
Query: 536 LP 537
+P
Sbjct: 720 IP 721
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 166/681 (24%), Positives = 266/681 (39%), Gaps = 104/681 (15%)
Query: 59 LSNNNLSGTVDXXXXXXXXXXXXXXXXS-SNKLSLLTRATLNTNLPNFTVIGFNSCNLSE 117
LSN++++G+V S S ++ LT + L V S N +
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV----SSNTLD 139
Query: 118 FPYFLHNQDELVS---LDLSSNKIAGQDLLVLPW------SKMNTLDLGFNKLQGPLPVP 168
FP + +L S LDLS+N I+G + V+ W ++ L + NK+ G + V
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGAN--VVGWVLSDGCGELKHLAISGNKISGDVDVS 197
Query: 169 SLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFS 228
L+ LD+S NN S +P LG+ S L L + N + T L +++ S
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP-FLGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 229 NNSLQG----------RALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKH 278
+N G + L L N F GEI + +G L +DLS N F G +P
Sbjct: 256 SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYGAVPP-- 312
Query: 279 FHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKGTEIEYLKLSNLIAA 338
F ++ + A + LP D L LK+ L
Sbjct: 313 FFGSCSLLESLALSSNNFSGE-LPMDTL-----------------------LKMRGL-KV 347
Query: 339 IIISDKNFVGEIPTSISSLKG-LRTXXXXXXXXRGGAIPQGTQFSTFT-NDWFAGNPGLC 396
+ +S F GE+P S+++L L T G +P Q T + + N G
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 397 GE--PLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLG 454
G+ P C SE + L+F + L G P + L L+ L
Sbjct: 408 GKIPPTLSNC--SELVSLH--------LSFNY---------LSGTIPSSLGSLSKLRDLK 448
Query: 455 VMKNPNLTGYLPQ-FQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIP 513
+ N L G +PQ LE L L + +G+IP + N +L+++ +S+ G+IP
Sbjct: 449 LWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 514 SSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASL----GNLT- 568
+ L L L LS N F +P +G+ SL L++++ F+ T+ A++ G +
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
Query: 569 -----------QLDSLTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPYCNLNNEIPFGISN 617
+ D + LN+L++ N CN+ + + G ++
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN--PCNITSRVYGGHTS 625
Query: 618 LT-----QLTALDLSYNQLTGPIPYXXXXXXXXXXXXXGFNQLSGRIPVEIXXXXXXXXX 672
T + LD+SYN L+G IP G N +SG IP E+
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685
Query: 673 XXXXXXXEGSVPSSIFELRNL 693
+G +P ++ L L
Sbjct: 686 DLSSNKLDGRIPQAMSALTML 706
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 116/304 (38%), Gaps = 74/304 (24%)
Query: 1 MNLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLS 60
M + L TL L N LTG IP + T L + L+ N+L G +P I L NL L LS
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 61 NNNLSGTVDXXXXXXXXXXXXXXXXSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY 120
NN+ SG + L LNTNL N T+ P
Sbjct: 523 NNSFSGNIPAELGDCRS---------------LIWLDLNTNLFNGTI-----------PA 556
Query: 121 FLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLG--------------FNKLQGPLP 166
+ Q S +++N IAG+ + + M G N+L P
Sbjct: 557 AMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 167 V------------PSLN---GLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRI 211
P+ + + LD+SYN LSG +P+ +G+ L L L N+
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISGS 671
Query: 212 VPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271
+P + L ++D S+N L GR PQ L IDLS+N +
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRI--------------PQAMSALTMLTEIDLSNNNLS 717
Query: 272 GNLP 275
G +P
Sbjct: 718 GPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 173/676 (25%), Positives = 265/676 (39%), Gaps = 101/676 (14%)
Query: 6 LSTLYLQHNQLTGHIPV--EIRKLTQLQIVRLAENQLE--GSVPSSIFELRNLQALDLSN 61
L++L L N L+G + + + L+ + ++ N L+ G V S +L +L+ LDLS
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV-SGGLKLNSLEVLDLSA 157
Query: 62 NNLSGT-VDXXXXXXXXXXXXXXXXSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY 120
N++SG V S NK+S + NL V +S N S
Sbjct: 158 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDV---SSNNFSTGIP 214
Query: 121 FLHNQDELVSLDLSSNKIAGQ-DLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLS 179
FL + L LD+S NK++G + +++ L++ N+ GP+P L LQ L L+
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 274
Query: 180 YNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALIL 239
N +G +P+ L L+ L L N+FY VP F + +L L
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF------------GSCSLLESLAL 322
Query: 240 KFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVK 299
NNF GE+ T + L+++DLS N F+G LP LT L
Sbjct: 323 SSNNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPES---------------LTNLSAS 366
Query: 300 LLPYDVLGFTYYGYADYSLTMSNKGTEIE-YLK-----------LSNL--IAAIIISDKN 345
LL D+ + G +L + K T E YL+ LSN + ++ +S
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 346 FVGEIPTSISSLKGLRTXXXXXXXXRGGAIPQGTQFSTFTNDWFAGNPGLCGEPLS--RK 403
G IP+S+ SL LR G IPQ + L GE S
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 404 CGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTG 463
C N W I L+ L GE P+ I +L NL L + N + +G
Sbjct: 486 CTN-----------------LNW-ISLSNN-RLTGEIPKWIGRLENLAILKLSNN-SFSG 525
Query: 464 YLP-QFQKSSLLEDLRLSYTRFSGKIPDSIEN---------LESLSYLGIS------DC- 506
+P + L L L+ F+G IP ++ + Y+ I +C
Sbjct: 526 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 585
Query: 507 ------SFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTL 560
F G L L+ ++ + + N S+ L++S S +
Sbjct: 586 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 645
Query: 561 QASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQ 620
+G++ L L + + +L L L+ L+ IP +S LT
Sbjct: 646 PKEIGSMPYLFILNLGHNDISGSIPDE---VGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 621 LTALDLSYNQLTGPIP 636
LT +DLS N L+GPIP
Sbjct: 703 LTEIDLSNNNLSGPIP 718
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 160/688 (23%), Positives = 262/688 (38%), Gaps = 100/688 (14%)
Query: 35 LAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDXXXXXXXXXXXXXXXXSSNKLSLLT 94
L+ + + GSV S +L +LDLS N+LSG V SSN L
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 95 RATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPW------ 148
+ + L + V LDLS+N I+G + V+ W
Sbjct: 140 KVSGGLKLNSLEV-----------------------LDLSANSISGAN--VVGWVLSDGC 174
Query: 149 SKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNF 208
++ L + NK+ G + V L+ LD+S NN S +P LG+ S L L + N
Sbjct: 175 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSA-LQHLDISGNKL 232
Query: 209 YRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHN 268
+ T L +++ S+N G P L+ + L+ N
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVG----------------PIPPLPLKSLQYLSLAEN 276
Query: 269 RFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKGTEIE 328
+FTG +P + + ++ S + + P+ A S S +
Sbjct: 277 KFTGEIPDFLSGACDTLTGLDLSG-NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 335
Query: 329 YLKLSNLIAAIIISDKNFVGEIPTSISSLKG-LRTXXXXXXXXRGGAIPQGTQFSTFT-N 386
LK+ L + +S F GE+P S+++L L T G +P Q T
Sbjct: 336 LLKMRGL-KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 387 DWFAGNPGLCGE--PLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEI 444
+ + N G G+ P C SE + L+F + L G P +
Sbjct: 395 ELYLQNNGFTGKIPPTLSNC--SELVSLH--------LSFNY---------LSGTIPSSL 435
Query: 445 FQLPNLQFLGVMKNPNLTGYLPQ-FQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGI 503
L L+ L + N L G +PQ LE L L + +G+IP + N +L+++ +
Sbjct: 436 GSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 504 SDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQAS 563
S+ G+IP + L L L LS N F +P +G+ SL L++++ F+ T+ A+
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 564 L----GNLT------------QLDSLTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPYCNL 607
+ G + + D + LN+L++ N CN+
Sbjct: 555 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN--PCNI 612
Query: 608 NNEIPFGISNLT-----QLTALDLSYNQLTGPIPYXXXXXXXXXXXXXGFNQLSGRIPVE 662
+ + G ++ T + LD+SYN L+G IP G N +SG IP E
Sbjct: 613 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Query: 663 IXXXXXXXXXXXXXXXXEGSVPSSIFEL 690
+ +G +P ++ L
Sbjct: 673 VGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 121/469 (25%), Positives = 180/469 (38%), Gaps = 116/469 (24%)
Query: 14 NQLTGHIPVE-IRKLTQLQIVRLAENQLEGSVPSSIFELR-NLQALDLSNNNLSGTVDXX 71
N +G +P++ + K+ L+++ L+ N+ G +P S+ L +L LDLS+NN SG +
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI--- 381
Query: 72 XXXXXXXXXXXXXXSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSL 131
N + L L N GF + P L N ELVSL
Sbjct: 382 ----------LPNLCQNPKNTLQELYLQNN-------GFTG----KIPPTLSNCSELVSL 420
Query: 132 DLSSNKIAGQDLLVL-PWSKMNTLDLGFNKLQGPLP--VPSLNGLQALDLSYNNLSGMLP 188
LS N ++G L SK+ L L N L+G +P + + L+ L L +N+L+G +P
Sbjct: 421 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 480
Query: 189 ECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEI 248
L N L+ + L N +P+ NL ++ SNNS G N E+
Sbjct: 481 SGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG--------NIPAEL 531
Query: 249 EEPQTGFEFPKLRIIDLSHNRFTGNLPSKHF--------------------------HCW 282
+ ++ L +DL+ N F G +P+ F C
Sbjct: 532 GDCRS------LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 585
Query: 283 NA-----MKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKGT----EIEYLKLS 333
A + I + +L L + P ++ Y G+ S T N G+ ++ Y LS
Sbjct: 586 GAGNLLEFQGIRSEQLNRLSTRN-PCNITSRVYGGHT--SPTFDNNGSMMFLDMSYNMLS 642
Query: 334 NLIAAII----------ISDKNFVGEIPTSISSLKGLRTXXXXXXXXRG----------- 372
I I + + G IP + L+GL G
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 373 ------------GAIPQGTQFSTFTNDWFAGNPGLCGEPLSRKCGNSEA 409
G IP+ QF TF F NPGLCG PL R C S A
Sbjct: 703 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPSNA 750
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 151/602 (25%), Positives = 225/602 (37%), Gaps = 167/602 (27%)
Query: 2 NLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSN 61
+ + L L + N+L+G I T+L+++ ++ NQ G +P L++LQ L L+
Sbjct: 218 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAE 275
Query: 62 NNLSGTVDXXXXXXXXXXXXXXXXSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYF 121
N +G E P F
Sbjct: 276 NKFTG--------------------------------------------------EIPDF 285
Query: 122 LHNQ-DELVSLDLSSNKIAGQDLLVLPW----SKMNTLDLGFNKLQGPLPVPSL---NGL 173
L D L LDLS N G V P+ S + +L L N G LP+ +L GL
Sbjct: 286 LSGACDTLTGLDLSGNHFYGA---VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 342
Query: 174 QALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYR-IVPQTFMNGTNLMMIDFSNNSL 232
+ LDLS+N SG LPE L N S L L L +NNF I+P N N +
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL--------- 393
Query: 233 QGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPS--------KHFHCW-N 283
+ L L+ N F G+I P T +L + LS N +G +PS + W N
Sbjct: 394 --QELYLQNNGFTGKI--PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 449
Query: 284 AMKDINASKLTY---LQVKLLPY-DVLGFTYYGYADYS----LTMSNKGTEIEYLK---- 331
++ +L Y L+ +L + D+ G G ++ + +++SN E K
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 332 LSNLIAAIIISDKNFVGEIPTSISSLKGLRTXXXXXXXXRGGAIP--------------- 376
L NL A + +S+ +F G IP + + L G IP
Sbjct: 510 LENL-AILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFI 567
Query: 377 QGTQFSTFTNDWF------AGN----PGLCGEPLSR-----------KCGNSEASPVEDD 415
G ++ ND AGN G+ E L+R + SP D+
Sbjct: 568 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 627
Query: 416 PPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLE 475
S L + + L G P+EI +P L F+
Sbjct: 628 NGSMMFLDMSYNM-------LSGYIPKEIGSMPYL-FI---------------------- 657
Query: 476 DLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDE 535
L L + SG IPD + +L L+ L +S G+IP ++ LT L + LS N
Sbjct: 658 -LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 716
Query: 536 LP 537
+P
Sbjct: 717 IP 718
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 119/290 (41%), Gaps = 34/290 (11%)
Query: 433 GCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSI 492
G L G+F + I L+ L + N G +P SL + L L+ +F+G+IPD +
Sbjct: 229 GNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPPLPLKSL-QYLSLAENKFTGEIPDFL 286
Query: 493 EN-LESLSYLGISDCSFIGKIP-------------------------SSLFNLTKLEHLY 526
++L+ L +S F G +P +L + L+ L
Sbjct: 287 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 346
Query: 527 LSGNRFLDELPTSIGNL-ASLKALEISSFNFSSTLQASLGNLTQ--LDSLTIXXXXXXXX 583
LS N F ELP S+ NL ASL L++SS NFS + L NL Q ++L
Sbjct: 347 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI---LPNLCQNPKNTLQELYLQNNGF 403
Query: 584 XXXXXXWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYXXXXXX 643
L+N ++L SL+ + L+ IP + +L++L L L N L G IP
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 463
Query: 644 XXXXXXXGFNQLSGRIPVEIXXXXXXXXXXXXXXXXEGSVPSSIFELRNL 693
FN L+G IP + G +P I L NL
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 130/342 (38%), Gaps = 76/342 (22%)
Query: 1 MNLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLS 60
M + L TL L N LTG IP + T L + L+ N+L G +P I L NL L LS
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 61 NNNLSGTVDXXXXXXXXXXXXXXXXSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY 120
NN+ SG + L LNTNL N T+ P
Sbjct: 520 NNSFSGNIPAELGDCRS---------------LIWLDLNTNLFNGTI-----------PA 553
Query: 121 FLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLG--------------FNKLQGPLP 166
+ Q S +++N IAG+ + + M G N+L P
Sbjct: 554 AMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 167 V------------PSLN---GLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRI 211
P+ + + LD+SYN LSG +P+ +G+ L L L N+
Sbjct: 610 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISGS 668
Query: 212 VPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271
+P + L ++D S+N L GR PQ L IDLS+N +
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRI--------------PQAMSALTMLTEIDLSNNNLS 714
Query: 272 GNLPS-KHFHCWNAMKDINASKLT-YLQVKLLPYDVLGFTYY 311
G +P F + K +N L Y + P + G+ ++
Sbjct: 715 GPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHH 756
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 153 TLDLGFNKLQGPLP--VPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYR 210
TLD +N L G LP + SL L + N +SG +P+ G+FS +++ + N
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 211 IVPQTFMNGTNLMMIDFSNNSLQGRALIL---KFNNFHGEIEEPQTGFEFPKLRI----- 262
+P TF N NL +D S N L+G A +L N + + F+ K+ +
Sbjct: 189 KIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 263 -IDLSHNRFTGNLP 275
+DL +NR G LP
Sbjct: 248 GLDLRNNRIYGTLP 261
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 104/269 (38%), Gaps = 28/269 (10%)
Query: 150 KMNTLDLGFNKLQGPLPVPS-LNGLQALDLSY----NNLSGMLPECLGNFSVELSALKLQ 204
++N LDL L P P+PS L L L+ Y NNL G +P + + +L L +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYIT 109
Query: 205 ANNFYRIVPQTFMNGTNLMMIDFSNNSLQGR------------ALILKFNNFHGEIEEPQ 252
N +P L+ +DFS N+L G + N G I P
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PD 167
Query: 253 TGFEFPKL-RIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYY 311
+ F KL + +S NR TG +P + A D++ + L L D
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD------K 221
Query: 312 GYADYSLTMSNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTXXXXXXXXR 371
L ++ ++ + LS + + + + G +P ++ LK L +
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL- 280
Query: 372 GGAIPQGTQFSTFTNDWFAGNPGLCGEPL 400
G IPQG F +A N LCG PL
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 108/258 (41%), Gaps = 48/258 (18%)
Query: 2 NLNKLSTLYLQH-NQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLS 60
NL L+ LY+ N L G IP I KLTQL + + + G++P + +++ L LD S
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 61 NNNLSGTVDXXXXXXXXXXXXXXXXSSNKLSLLTRATLNTNLPNFTVIGFNSCNLS-EFP 119
N LSGT+ ++LPN I F+ +S P
Sbjct: 134 YNALSGTLPPSI---------------------------SSLPNLVGITFDGNRISGAIP 166
Query: 120 YFLHNQDEL-VSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPV--PSLNGLQAL 176
+ +L S+ +S N++ G+ + +DL N L+G V S Q +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 177 DLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRA 236
L+ N+L+ L + S L+ L L+ N Y +PQ T L + +
Sbjct: 227 HLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGL---TQLKFL---------HS 272
Query: 237 LILKFNNFHGEIEEPQTG 254
L + FNN GEI PQ G
Sbjct: 273 LNVSFNNLCGEI--PQGG 288
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 8/203 (3%)
Query: 436 LQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQF-QKSSLLEDLRLSYTRFSGKIPDSIEN 494
L G P I +L L +L + N++G +P F + L L SY SG +P SI +
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 495 LESLSYLGISDCSFIGKIPSSLFNLTKL-EHLYLSGNRFLDELPTSIGNLASLKALEISS 553
L +L + G IP S + +KL + +S NR ++P + NL +L +++S
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLS- 205
Query: 554 FNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPYCNLNNEIPF 613
+ L+ L D T + L L+ + +P
Sbjct: 206 ---RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 614 GISNLTQLTALDLSYNQLTGPIP 636
G++ L L +L++S+N L G IP
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIP 285
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 29/151 (19%)
Query: 512 IPSSLFNLTKLEHLYLSG-NRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQL 570
IPSSL NL L LY+ G N + +P +I L L L I+ N S +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP--------- 118
Query: 571 DSLTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQ 630
+L+ + L +L+F Y L+ +P IS+L L + N+
Sbjct: 119 ------------------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 631 LTGPIPYXXXX-XXXXXXXXXGFNQLSGRIP 660
++G IP N+L+G+IP
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 520 TKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTIXXXX 579
T + LYL N+ P +L +LK L + S + +LTQL L +
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 580 XXXXXXXXXXWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPY 637
L +L +L F CN E+P GI LT LT L L NQL IP+
Sbjct: 100 LTVLPSAVFDRLVHLKEL----FMCCNKLTELPRGIERLTHLTHLALDQNQLKS-IPH 152
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 9 LYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSNNNLS 65
LYL NQ+T P L L+ + L NQL G++P +F+ L L LDL N L+
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 148 WSKMNTLDLGFNKLQGPLP--VPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQA 205
+S++ +LD+GFN + P L L+ L+L +N LS + + F L+ L L +
Sbjct: 53 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMS 111
Query: 206 NNFYRIVPQTFMNGTNLMMIDFSNNSLQGRAL 237
N+ +I F+ NL+ +D S+N L L
Sbjct: 112 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 143
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 148 WSKMNTLDLGFNKLQGPLP--VPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQA 205
+S++ +LD+GFN + P L L+ L+L +N LS + + F L+ L L +
Sbjct: 58 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMS 116
Query: 206 NNFYRIVPQTFMNGTNLMMIDFSNNSLQGRAL 237
N+ +I F+ NL+ +D S+N L L
Sbjct: 117 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 148
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 148 WSKMNTLDLGFNKLQGPLP--VPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQA 205
+S++ +LD+GFN + P L L+ L+L +N LS + + F L+ L L +
Sbjct: 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMS 106
Query: 206 NNFYRIVPQTFMNGTNLMMIDFSNNSLQGRAL 237
N+ +I F+ NL+ +D S+N L L
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 16/197 (8%)
Query: 439 EFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESL 498
+FP + F+L +LQ + L Q+ + LE L L+ +P SI +L L
Sbjct: 95 QFPDQAFRLSHLQHXTI-DAAGLXELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRL 152
Query: 499 SYLGISDCSFIGKIPSSLFN---------LTKLEHLYLSGNRFLDELPTSIGNLASLKAL 549
L I C + ++P L + L L+ L L + LP SI NL +LK+L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSL 211
Query: 550 EISSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPYCNLNN 609
+I + S+ L ++ +L +L+ L + L +L C+
Sbjct: 212 KIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI---LKDCSNLL 267
Query: 610 EIPFGISNLTQLTALDL 626
+P I LTQL LDL
Sbjct: 268 TLPLDIHRLTQLEKLDL 284
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Query: 440 FPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLS 499
P I L NL+ L + +P L+ P LE+L L P L
Sbjct: 198 LPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 500 YLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLAS 545
L + DCS + +P + LT+LE L L G L LP+ I L +
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 NLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLS 60
+L +L LYL NQL +LT+L+ +RL NQL+ S+P+ F+ L NLQ L LS
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 61 NNNL 64
N L
Sbjct: 164 TNQL 167
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 477 LRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFN-LTKLEHLYLSGNRFLDE 535
L L Y + ++L L LG+++ + + +P +F+ LT+L+ LYL GN+ L
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLPLGVFDHLTQLDKLYLGGNQ-LKS 121
Query: 536 LPTSI-GNLASLKALEISSFNFSSTLQASLGNLTQLDSLTI 575
LP+ + L LK L +++ S + LT L +L++
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L KL L L NQL KLT LQ + L+ NQL+ SVP F+ L LQ + L
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188
Query: 62 N 62
N
Sbjct: 189 N 189
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 NLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLS 60
+L +L LYL NQL +LT+L+ +RL NQL+ S+P+ F+ L NLQ L LS
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 61 NNNL 64
N L
Sbjct: 164 TNQL 167
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 477 LRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFN-LTKLEHLYLSGNRFLDE 535
L L Y + ++L L LG+++ + + +P +F+ LT+L+ LYL GN+ L
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLPLGVFDHLTQLDKLYLGGNQ-LKS 121
Query: 536 LPTSI-GNLASLKALEISSFNFSSTLQASLGNLTQLDSLTI 575
LP+ + L LK L +++ S + LT L +L++
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L KL L L NQL KLT LQ + L+ NQL+ SVP F+ L LQ + L
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188
Query: 62 N 62
N
Sbjct: 189 N 189
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 148 WSKMNTLDLGFNKLQGPLP--VPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQA 205
+S++ LD GFN + P L L+ L+L +N LS + + F L+ L L +
Sbjct: 48 YSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFV-FCTNLTELDLMS 106
Query: 206 NNFYRIVPQTFMNGTNLMMIDFSNNSLQGRAL 237
N+ ++I F N NL+ +D S+N L L
Sbjct: 107 NSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKL 138
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 91/237 (38%), Gaps = 27/237 (11%)
Query: 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLS 65
L L LQHN+L+ T L + L N + + +NL LDLS+N LS
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Query: 66 ------GTVDXXXXXXXXXXXXXXXXSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEF- 118
G S +L L ++L + +S L EF
Sbjct: 135 STKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRK-------LDLSSNPLKEFS 187
Query: 119 PYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNT----LDLGFNKL----QGPLPVPSL 170
P +L +L L++ ++ L W NT L L N+L +
Sbjct: 188 PGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKW 247
Query: 171 NGLQALDLSYNNLSGMLPECLGNFSV--ELSALKLQANNFYRIVPQTFMNGTNLMMI 225
L LDLSYNNL + G+FS L L L+ NN R+ P++F +NL +
Sbjct: 248 TNLTQLDLSYNNLHDV---GNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYL 301
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 9 LYLQHN---QLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLS 65
+YL +N QL+ + L +L + R+A ++ S PS LRNL LDLSNNN++
Sbjct: 435 IYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDIS-PSPFRPLRNLTILDLSNNNIA 493
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 77/189 (40%), Gaps = 8/189 (4%)
Query: 447 LPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDS-IENLESLSYLGISD 505
L +LQ+L + N L F++ LE L +++T K P S +NL L L +S
Sbjct: 374 LRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
Query: 506 CSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEI---SSFNFSSTLQA 562
C L L L HL L GN F D + L + +LEI SS N S Q
Sbjct: 434 CLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQ 493
Query: 563 SLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLT 622
+ L ++ L + L L LN N+ P + L+Q +
Sbjct: 494 AFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL----YLNMASNNIRIIPPHLLPALSQQS 549
Query: 623 ALDLSYNQL 631
++LS+N L
Sbjct: 550 IINLSHNPL 558
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 17/158 (10%)
Query: 482 TRFSGKIPD--SIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTS 539
T F+ +I D ++NL +L+ L +S + I I S+L LT L+ L S N+ D P
Sbjct: 113 TLFNNQITDIDPLKNLTNLNRLELS-SNTISDI-SALSGLTSLQQLSFSSNQVTDLKP-- 168
Query: 540 IGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTS 599
+ NL +L+ L+ISS S + L LT L+SL +T L LT+
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD--------ITPLGILTN 218
Query: 600 LNFPYCNLNNEIPFG-ISNLTQLTALDLSYNQLTGPIP 636
L+ N N G +++LT LT LDL+ NQ++ P
Sbjct: 219 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 17/158 (10%)
Query: 482 TRFSGKIPD--SIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTS 539
T F+ +I D ++NL +L+ L +S + I I S+L LT L+ L S N+ D P
Sbjct: 113 TLFNNQITDIDPLKNLTNLNRLELS-SNTISDI-SALSGLTSLQQLSFSSNQVTDLKP-- 168
Query: 540 IGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTS 599
+ NL +L+ L+ISS S + L LT L+SL +T L LT+
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD--------ITPLGILTN 218
Query: 600 LNFPYCNLNNEIPFG-ISNLTQLTALDLSYNQLTGPIP 636
L+ N N G +++LT LT LDL+ NQ++ P
Sbjct: 219 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 17/158 (10%)
Query: 482 TRFSGKIPD--SIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTS 539
T F+ +I D ++NL +L+ L +S + I I S+L LT L+ L S N+ D P
Sbjct: 113 TLFNNQITDIDPLKNLTNLNRLELS-SNTISDI-SALSGLTSLQQLNFSSNQVTDLKP-- 168
Query: 540 IGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTS 599
+ NL +L+ L+ISS S + L LT L+SL +T L LT+
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD--------ITPLGILTN 218
Query: 600 LNFPYCNLNNEIPFG-ISNLTQLTALDLSYNQLTGPIP 636
L+ N N G +++LT LT LDL+ NQ++ P
Sbjct: 219 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 447 LPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDS-IENLESLSYLGISD 505
L +LQ L + N L F++ LE L L++TR P S +NL L L ++
Sbjct: 372 LSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTY 431
Query: 506 CSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTS---IGNLASLKALEISSFNFSSTLQA 562
C L L L HL L GN F D T + + SL+ L +SS S Q
Sbjct: 432 CFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQ 491
Query: 563 ---SLGNLTQLD 571
SLG ++ +D
Sbjct: 492 AFHSLGKMSHVD 503
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 4/186 (2%)
Query: 2 NLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLS 60
NL+ L TL L HN+ G ++ QL+++ LA +L + P S F+ L LQ L+L+
Sbjct: 371 NLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLT 430
Query: 61 NNNLSGTVDXXXXXXXXXXXXXXXXSSNKLSLLTRATLNTNLPNFTVIGFNSCN-LSEFP 119
L + + + +T+ L + + V+ +SC LS
Sbjct: 431 YCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQ 490
Query: 120 YFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQ--GPLPVPSLNGLQALD 177
H+ ++ +DLS N + + L K L+L N + P +P L+ ++
Sbjct: 491 QAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTIN 550
Query: 178 LSYNNL 183
LS+N L
Sbjct: 551 LSHNPL 556
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 468 FQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYL 527
FQ + L++L L+ T G +P ++ L L L +S F S N L HLY+
Sbjct: 271 FQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYI 329
Query: 528 SGNRFLDELPTSIG---NLASLKALEIS--SFNFSSTLQASLGNLTQLDSLTI 575
GN + +L +G L +L+ L++S S L NL+ L +L +
Sbjct: 330 RGN--VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNL 380
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 26/208 (12%)
Query: 438 GEFPQEIFQ------LPNLQ--FLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIP 489
G F IFQ PNL F G+ + + +L F+ ++D +S G
Sbjct: 194 GAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFED---IDDEDISSAMLKGLCE 250
Query: 490 DSIE--NLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLK 547
S+E NL+ + IS +F T+L+ L L+ L LP+ + L LK
Sbjct: 251 MSVESLNLQEHRFSDISSTTFQC--------FTQLQELDLTATH-LKGLPSGMKGLNLLK 301
Query: 548 ALEISSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPYCNL 607
L +S +F Q S N L L I L L L +L+ + ++
Sbjct: 302 KLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVG--CLEKLGNLQTLDLSHNDI 359
Query: 608 --NNEIPFGISNLTQLTALDLSYNQLTG 633
++ + NL+ L L+LS+N+ G
Sbjct: 360 EASDCCSLQLKNLSHLQTLNLSHNEPLG 387
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 125/308 (40%), Gaps = 30/308 (9%)
Query: 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLS 65
+ +L LQ ++ + + TQLQ + L L+G +PS + L L+ L LS N+
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFD 311
Query: 66 GTVDXXXXXXXXXXXXXXXXSSNKLSL----LTR-ATLNT-NLPNFTVIGFNSCNLSEFP 119
+ KL L L + L T +L + + + C+L
Sbjct: 312 QLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQ--- 368
Query: 120 YFLHNQDELVSLDLSSNKIAG-QDLLVLPWSKMNTLDLGFNKLQ--GPL-PVPSLNGLQA 175
L N L +L+LS N+ G Q ++ LDL F +L P P +L+ LQ
Sbjct: 369 --LKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQV 426
Query: 176 LDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGR 235
L+L+Y L L V L L L+ N+F + TNL+ + SL+
Sbjct: 427 LNLTYCFLDTSNQHLLAGLPV-LRHLNLKGNHF----QDGTITKTNLLQ---TVGSLE-- 476
Query: 236 ALILKFNNFHGEIEEPQTGFE-FPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLT 294
LIL G + Q F K+ +DLSHN T + H ++ A+ +
Sbjct: 477 VLILSSC---GLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSIN 533
Query: 295 YLQVKLLP 302
+ +LLP
Sbjct: 534 IISPRLLP 541
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 20/141 (14%)
Query: 441 PQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSI--ENLESL 498
P+ LPNLQ+L ++ N + +LP K L+ + L I D+I +E
Sbjct: 97 PEAFQNLPNLQYL-LISNTGIK-HLPDVHKIHSLQKVLLD-------IQDNINIHTIERN 147
Query: 499 SYLGISDCSFI--------GKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKA-L 549
S++G+S S I +I +S FN T+L+ L LS N L+ELP + + AS L
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207
Query: 550 EISSFNFSSTLQASLGNLTQL 570
+IS S L NL +L
Sbjct: 208 DISRTRIHSLPSYGLENLKKL 228
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 509 IGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLT 568
I I +++F L LYL+GN L ELP I NL++L+ L++S N ++L A LG+
Sbjct: 236 IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCF 293
Query: 569 QL 570
QL
Sbjct: 294 QL 295
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPS---SIFELRNLQALD 58
L+ LYL N LT +P EI+ L+ L+++ L+ N+L S+P+ S F+L+ D
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFD 302
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 440 FPQEIFQ-LPNLQFLGVMKNP--NLTGY----LPQFQKSSLLEDLRLSYTRFSGKIPDSI 492
P + F+ L L+ L + NP ++ Y +P ++ L E RL Y + +
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEA-----AF 152
Query: 493 ENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEIS 552
E L +L YL + C+ + IP+ L L +LE L LSGNR P S L SL+ L +
Sbjct: 153 EGLVNLRYLNLGMCN-LKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLM 210
Query: 553 SFNFSSTLQASLGNLTQLDSLTI 575
++ + + +L L+ L +
Sbjct: 211 HAQVATIERNAFDDLKSLEELNL 233
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 14/142 (9%)
Query: 441 PQEIFQ-LPNLQFLGVMKNP--NLTGY----LPQFQKSSLLEDLRLSYTRFSGKIPDSIE 493
P + F+ L L+ L + NP ++ Y +P ++ L E RL Y + + E
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEA-----AFE 153
Query: 494 NLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISS 553
L +L YL + C+ + IP+ L L +LE L LSGNR P S L SL+ L +
Sbjct: 154 GLVNLRYLNLGMCN-LKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 554 FNFSSTLQASLGNLTQLDSLTI 575
++ + + +L L+ L +
Sbjct: 212 AQVATIERNAFDDLKSLEELNL 233
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 441 PQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSI--ENLESL 498
P+ LPNLQ+L ++ N + +LP K L+ + L I D+I +E
Sbjct: 97 PEAFQNLPNLQYL-LISNTGIK-HLPDVHKIHSLQKVLLD-------IQDNINIHTIERN 147
Query: 499 SYLGISDCSFI--------GKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKA-L 549
S++G+S S I +I + FN T+L+ L LS N L+ELP + + AS L
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207
Query: 550 EISSFNFSSTLQASLGNLTQLDS 572
+IS S L NL +L +
Sbjct: 208 DISRTRIHSLPSYGLENLKKLRA 230
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 492 IENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEI 551
IE L +L YL ++ P L NL KL +LY+ N+ D +++ NL +L+ L +
Sbjct: 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYL 117
Query: 552 SSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPYCNLNNEI 611
+ N S + L NLT+ SL + L+N L L + +
Sbjct: 118 NEDNISDI--SPLANLTKXYSLNLGANHNLSDLSP----LSNXTGLNYLTVTESKVKDVT 171
Query: 612 PFGISNLTQLTALDLSYNQLTGPIP 636
P I+NLT L +L L+YNQ+ P
Sbjct: 172 P--IANLTDLYSLSLNYNQIEDISP 194
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 17/165 (10%)
Query: 474 LEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIP--SSLFNLTKLEHLYLSGNR 531
L L L+Y + P + +L SL Y +++ +I + + N T+L L + N+
Sbjct: 179 LYSLSLNYNQIEDISP--LASLTSLHYF----TAYVNQITDITPVANXTRLNSLKIGNNK 232
Query: 532 FLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWL 591
D P + NL+ L LEI + S ++ +LT+L L + L
Sbjct: 233 ITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQISDISV-----L 283
Query: 592 TNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIP 636
NL+QL SL L NE I LT LT L LS N +T P
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
Query: 467 QFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLF----NLTKL 522
+F LE+L L+ S P + NL +L LG+ + + IP +F NLTKL
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKL 109
Query: 523 EHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTIXXXXXXX 582
+ +S N+ + L +L +LK+LE+ + + L L+ LT+
Sbjct: 110 D---ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166
Query: 583 XXXXXXXWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSY 628
L++L+ L L + N+N + L +L L++S+
Sbjct: 167 IPTEA---LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 5/185 (2%)
Query: 449 NLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSF 508
NL+ LG+ N L F S L L +S + + ++L +L L + D
Sbjct: 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 509 IGKIPSSLFNLTKLEHLYLSGNRFLDELPT-SIGNLASLKALEISSFNFSSTLQASLGNL 567
+ + L LE L L L +PT ++ +L L L + N ++ S L
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199
Query: 568 TQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLS 627
+L L I + NL TSL+ +CNL + +L L L+LS
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNL---TSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256
Query: 628 YNQLT 632
YN ++
Sbjct: 257 YNPIS 261
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 482 TRFSGKIPD--SIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTS 539
T F+ +I D ++NL +L+ L +S + I I S+L LT L+ L GN+ D P
Sbjct: 117 TLFNNQITDIDPLKNLTNLNRLELS-SNTISDI-SALSGLTSLQQLSF-GNQVTDLKP-- 171
Query: 540 IGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTS 599
+ NL +L+ L+ISS S + L LT L+SL +T L LT+
Sbjct: 172 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD--------ITPLGILTN 221
Query: 600 LNFPYCNLNNEIPFG-ISNLTQLTALDLSYNQLTGPIP 636
L+ N N G +++LT LT LDL+ NQ++ P
Sbjct: 222 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 259
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 482 TRFSGKIPD--SIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTS 539
T F+ +I D ++NL +L+ L +S + I I S+L LT L+ L GN+ D P
Sbjct: 118 TLFNNQITDIDPLKNLTNLNRLELS-SNTISDI-SALSGLTSLQQLSF-GNQVTDLKP-- 172
Query: 540 IGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTS 599
+ NL +L+ L+ISS S + L LT L+SL +T L LT+
Sbjct: 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD--------ITPLGILTN 222
Query: 600 LNFPYCNLNNEIPFG-ISNLTQLTALDLSYNQLTGPIP 636
L+ N N G +++LT LT LDL+ NQ++ P
Sbjct: 223 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 260
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L L+ LYL HNQL KLT L + L NQL+ S+P +F+ L L+ L L++
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLND 190
Query: 62 NNLSGTVD 69
N L D
Sbjct: 191 NQLKSVPD 198
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L L L L NQL KLT L + L NQL+ S+P +F+ L NL LDL N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDN 166
Query: 62 NNL 64
N L
Sbjct: 167 NQL 169
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE 50
L L+ L L +NQL KLTQL+ + L +NQL+ SVP +F+
Sbjct: 156 LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SVPDGVFD 202
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 25/152 (16%)
Query: 100 TNLPNFTVIGFNSC-NLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWS--------- 149
+NL + T + +C N ++ P FL++ EL SL+++ N+ L W+
Sbjct: 488 SNLKDLTDVELYNCPNXTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547
Query: 150 -KMNTLDLGFNKLQGPLPVPSLNGLQA------LDLSYNNLSGMLPECLGNFSVELSALK 202
K+ G+N L+ P+ LQ LD +N + + E G +V+L+ LK
Sbjct: 548 PKIQIFYXGYNNLE---EFPASASLQKXVKLGLLDCVHNKVRHL--EAFGT-NVKLTDLK 601
Query: 203 LQANNFYRIVPQTFMNGTNLMM-IDFSNNSLQ 233
L N I P+ F T+ + + FS+N L+
Sbjct: 602 LDYNQIEEI-PEDFCAFTDQVEGLGFSHNKLK 632
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 482 TRFSGKIPD--SIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTS 539
T F+ +I D ++NL +L+ L +S + I I S+L LT L+ L GN+ D P
Sbjct: 113 TLFNNQITDIDPLKNLTNLNRLELS-SNTISDI-SALSGLTSLQQLNF-GNQVTDLKP-- 167
Query: 540 IGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTS 599
+ NL +L+ L+ISS S + L LT L+SL +T L LT+
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD--------ITPLGILTN 217
Query: 600 LNFPYCNLNNEIPFG-ISNLTQLTALDLSYNQLTGPIP 636
L+ N N G +++LT LT LDL+ NQ++ P
Sbjct: 218 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 255
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 482 TRFSGKIPD--SIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTS 539
T F+ +I D ++NL +L+ L +S + I I S+L LT L+ L GN+ D P
Sbjct: 113 TLFNNQITDIDPLKNLTNLNRLELS-SNTISDI-SALSGLTSLQQLNF-GNQVTDLKP-- 167
Query: 540 IGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTS 599
+ NL +L+ L+ISS S + L LT L+SL +T L LT+
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD--------ITPLGILTN 217
Query: 600 LNFPYCNLNNEIPFG-ISNLTQLTALDLSYNQLTGPIP 636
L+ N N G +++LT LT LDL+ NQ++ P
Sbjct: 218 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 255
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 89/226 (39%), Gaps = 56/226 (24%)
Query: 9 LYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIF-ELRNLQALDLSNNNLSGT 67
L LQ N+L+ +LT+L+++ L +N+L+ ++P+ IF EL+NL+ L +++
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD------ 94
Query: 68 VDXXXXXXXXXXXXXXXXSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDE 127
NKL L + L N + + L P + +
Sbjct: 95 --------------------NKLQALPIGVFD-QLVNLAELRLDRNQLKSLPPRVFDS-- 131
Query: 128 LVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLP---VPSLNGLQALDLSYNNLS 184
+K+ L LG+N+LQ LP L L+ L L YNN
Sbjct: 132 --------------------LTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRL-YNNQL 169
Query: 185 GMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNN 230
+PE + EL LKL N R+ F + L M+ N
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L KL+ L L +N+L KLT L+ +RL NQL+ VP F+ L L+ L L N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDN 190
Query: 62 NNLS 65
N L
Sbjct: 191 NQLK 194
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSNNNL 64
L+ L L NQL P LT+L + L N+L+ S+P +F+ L +L+ L L NN L
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL 169
Query: 65 S 65
Sbjct: 170 K 170
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
Query: 440 FPQEIF-QLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESL 498
P IF +L NL+ L V N + F + L +LRL + P ++L L
Sbjct: 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 499 SYLGISDCSFIGKIPSSLFN-LTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFS 557
+YL + + + +P +F+ LT L+ L L N+ + L LK L++ +
Sbjct: 136 TYLSLG-YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Query: 558 STLQASLGNLTQLDSLTI 575
+ + +L +L L +
Sbjct: 195 RVPEGAFDSLEKLKMLQL 212
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L L L L +NQL KLT+L+ ++L NQL+ VP F+ L L+ L L
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQE 214
Query: 62 N 62
N
Sbjct: 215 N 215
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L +L L L NQL KLTQL+ +RL +NQL+ SVP +F+ L +LQ + L +
Sbjct: 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHD 157
Query: 62 N 62
N
Sbjct: 158 N 158
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 52/123 (42%), Gaps = 32/123 (26%)
Query: 512 IPSSLFN-LTKLEHLYLSGNRFLDELPTSIGN-LASLKALEISSFNFSSTLQASLGNLTQ 569
+P+ +F+ LT L LYL GN+ L LP + N L SL L +S+ S LTQ
Sbjct: 43 LPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101
Query: 570 LDSLTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPYCNLNNEIPFGI-SNLTQLTALDLSY 628
L L + N NQL SL P G+ LTQL L L
Sbjct: 102 LKELAL-----------------NTNQLQSL-----------PDGVFDKLTQLKDLRLYQ 133
Query: 629 NQL 631
NQL
Sbjct: 134 NQL 136
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L L+ LYL N+L KLT L + L+ NQL+ S+P+ +F+ L L+ L L+
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNT 109
Query: 62 NNLSGTVD 69
N L D
Sbjct: 110 NQLQSLPD 117
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L L+ L L NQL KLTQL+ + L NQL+ S+P +F+ L L+ L L
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQ 133
Query: 62 NNLSGTVD 69
N L D
Sbjct: 134 NQLKSVPD 141
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 2 NLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLS 60
L KL+ LYL N+L KLTQL+ + L NQL+ SVP IF+ L +LQ + L
Sbjct: 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH 132
Query: 61 NN 62
N
Sbjct: 133 TN 134
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 2 NLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLS 60
L +L+ L L NQ+ KLT+L I+ L EN+L+ S+P+ +F+ L L+ L L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALD 108
Query: 61 NNNLSGTVD 69
N L D
Sbjct: 109 TNQLKSVPD 117
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L L L L NQL KLT L + LA NQL+ S+P +F+ L NL LDLS
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSY 166
Query: 62 NNL 64
N L
Sbjct: 167 NQL 169
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L L+ L L +NQL KLTQL+ +RL +NQL+ SVP +F+ L +LQ + L +
Sbjct: 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHD 214
Query: 62 N 62
N
Sbjct: 215 N 215
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 519 LTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTIXXX 578
L + +L L GN+ D +++ L +L L ++ S LT L L +
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 579 XXXXXXXXXXXWLTNLNQLTSLNFPYCNLNNEIPFGI-SNLTQLTALDLSYNQL 631
LTNL T LN + L + +P G+ LT LT LDLSYNQL
Sbjct: 120 QLQSLPDGVFDKLTNL---TYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQL 169
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 514 SSLFNLTKLEHLYLSGNRFLDELPTSI-GNLASLKALEISSFNFSSTLQASLGNLTQLDS 572
S+L LT L +L L+GN+ L LP + L +LK L + S LT L
Sbjct: 79 SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 573 LTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPYCNLNNEIPFGI-SNLTQLTALDLSYNQL 631
L + LTNL T L+ Y L + +P G+ LTQL L L NQL
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNL---TELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQL 193
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L L+ L L NQL KLT L+ + L ENQL+ S+P +F+ L NL L+L++
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAH 142
Query: 62 NNL 64
N L
Sbjct: 143 NQL 145
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L L+ L L HNQL KLT L + L+ NQL+ S+P +F+ L L+ L L
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQ 190
Query: 62 NNLSGTVD 69
N L D
Sbjct: 191 NQLKSVPD 198
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 154 LDLGFNKLQGPLP---VPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYR 210
L+L N+LQ LP L L LDLSYN L LPE + + +L L+L N
Sbjct: 138 LNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKS 195
Query: 211 IVPQTFMNGTNLMMIDFSNN 230
+ F T+L I +N
Sbjct: 196 VPDGVFDRLTSLQYIWLHDN 215
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
Query: 164 PLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLM 223
P +PS L LDLS+NNLS + E L +L L N+ I + F+ NL
Sbjct: 34 PQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91
Query: 224 MIDFSNN-----------SLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271
+D S+N LQ ++L +NN H + + + +L+ + LS N+ +
Sbjct: 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQIS 149
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 102 LPNFTVIGFNSCNLSEFPYFLHNQDELVSL-DLSSNKIAGQDLLVLPWSK-MNTLDLGFN 159
L N ++ F + + + P L + V L +L+ +I D ++ + L +GFN
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109
Query: 160 KLQ--GPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFM 217
++ P ++ L L L N+LS LP + + + +L+ L + NN RI TF
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168
Query: 218 NGTNLMMIDFSNNSLQGRALILKFNNFHGEI 248
T+L + S+N L L L + FH +
Sbjct: 169 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 199
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 447 LPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGK-IPDSIENLESLSYLGISD 505
L NL +L + + F S LE L+++ F +PD L +L++L +S
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 506 CSFIGKIPSSLFNLTKLEHLYLSGNRF--LDELPTSIGNLASLKALEIS 552
C P++ +L+ L+ L +S N F LD P N SL+ L+ S
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--SLQVLDYS 550
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 80/209 (38%), Gaps = 11/209 (5%)
Query: 424 FGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTR 483
FGW+ + C G+FP +L +L+ L N + S DL +
Sbjct: 328 FGWQHLELVNCKF-GQFP--TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 384
Query: 484 FSGKIPDSIENLESLSYLGISDCSFIGKI--PSSLFNLTKLEHLYLSGNRFLDELPTSIG 541
F G S SL YL D SF G I S+ L +LEHL + S+
Sbjct: 385 FKGCCSQSDFGTISLKYL---DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441
Query: 542 -NLASLKALEISSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTSL 600
+L +L L+IS + L+ L+ L + T L LT L
Sbjct: 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFL 499
Query: 601 NFPYCNLNNEIPFGISNLTQLTALDLSYN 629
+ C L P ++L+ L L++S+N
Sbjct: 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 128 LVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNG---LQALDLSYNNLS 184
L +LDLS N++ LL + LD+ FN+L LP+ +L G LQ L L N L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK 137
Query: 185 GMLPECLGNFSVELSALKLQANNFYRIVPQTFMNG-TNLMMIDFSNNSL 232
LP L + +L L L NN + P +NG NL + NSL
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSL 184
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 447 LPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGK-IPDSIENLESLSYLGISD 505
L NL +L + + F S LE L+++ F +PD L +L++L +S
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 506 CSFIGKIPSSLFNLTKLEHLYLSGNRF--LDELPTSIGNLASLKALEIS 552
C P++ +L+ L+ L +S N F LD P N SL+ L+ S
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--SLQVLDYS 526
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 80/209 (38%), Gaps = 11/209 (5%)
Query: 424 FGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTR 483
FGW+ + C G+FP +L +L+ L N + S DL +
Sbjct: 304 FGWQHLELVNCKF-GQFP--TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360
Query: 484 FSGKIPDSIENLESLSYLGISDCSFIGKI--PSSLFNLTKLEHLYLSGNRFLDELPTSIG 541
F G S SL YL D SF G I S+ L +LEHL + S+
Sbjct: 361 FKGCCSQSDFGTTSLKYL---DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417
Query: 542 -NLASLKALEISSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTSL 600
+L +L L+IS + L+ L+ L + T L LT L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFL 475
Query: 601 NFPYCNLNNEIPFGISNLTQLTALDLSYN 629
+ C L P ++L+ L L++S+N
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 128 LVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNG---LQALDLSYNNLS 184
L +LDLS N++ LL + LD+ FN+L LP+ +L G LQ L L N L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK 137
Query: 185 GMLPECLGNFSVELSALKLQANNFYRIVPQTFMNG-TNLMMIDFSNNSL 232
LP L + +L L L NN + P +NG NL + NSL
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 128 LVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNG---LQALDLSYNNLS 184
L +LDLS N++ LL + LD+ FN+L LP+ +L G LQ L L N L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK 137
Query: 185 GMLPECLGNFSVELSALKLQANNFYRIVPQTFMNG-TNLMMIDFSNNSL 232
LP L + +L L L ANN +P +NG NL + NSL
Sbjct: 138 -TLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 128 LVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNG---LQALDLSYNNLS 184
L +LDLS N++ LL + LD+ FN+L LP+ +L G LQ L L N L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK 137
Query: 185 GMLPECLGNFSVELSALKLQANNFYRIVPQTFMNG-TNLMMIDFSNNSL 232
LP L + +L L L NN + P +NG NL + NSL
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSL 184
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 447 LPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGK-IPDSIENLESLSYLGISD 505
L NL +L + + F S LE L+++ F +PD L +L++L +S
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 506 CSFIGKIPSSLFNLTKLEHLYLSGNRF--LDELPTSIGNLASLKALEIS 552
C P++ +L+ L+ L +S N F LD P N SL+ L+ S
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--SLQVLDYS 231
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 103/270 (38%), Gaps = 52/270 (19%)
Query: 26 KLTQLQIVRLAENQL--EGSVPSSIFELRNLQALDLSNNNLSGTVDXXXXXXXXXXXXXX 83
KLTQL + L+ N L +G S F +L+ LDLS N G +
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVI--------------- 91
Query: 84 XXSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSN--KIAGQ 141
SSN L L L+ N +SEF FL ++ L+ LD+S ++A
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLK-------QMSEFSVFLSLRN-LIYLDISHTHTRVAFN 143
Query: 142 DLLVLPWSKMNTLDLGFNKLQG---PLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVEL 198
+ S + L + N Q P L L LDLS L + P + S L
Sbjct: 144 GIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SL 201
Query: 199 SALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFP 258
L + NNF+ + + +L ++D+S N H + Q FP
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN--------------HIMTSKKQELQHFP 247
Query: 259 -KLRIIDLSHNRFTGNLPSKHFHCWNAMKD 287
L ++L+ N F + F W +KD
Sbjct: 248 SSLAFLNLTQNDFACTCEHQSFLQW--IKD 275
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 128 LVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNG---LQALDLSYNNLS 184
L +LDLS N++ LL + LD+ FN+L LP+ +L G LQ L L N L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK 137
Query: 185 GMLPECLGNFSVELSALKLQANNFYRIVPQTFMNG-TNLMMIDFSNNSL 232
LP L + +L L L ANN +P +NG NL + NSL
Sbjct: 138 -TLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 128 LVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNG---LQALDLSYNNLS 184
L +LDLS N++ LL + LD+ FN+L LP+ +L G LQ L L N L
Sbjct: 80 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK 138
Query: 185 GMLPECLGNFSVELSALKLQANNFYRIVPQTFMNG-TNLMMIDFSNNSL 232
LP L + +L L L NN + P +NG NL + NSL
Sbjct: 139 -TLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSL 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 128 LVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNG---LQALDLSYNNLS 184
L +LDLS N++ LL + LD+ FN+L LP+ +L G LQ L L N L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK 137
Query: 185 GMLPECLGNFSVELSALKLQANNFYRIVPQTFMNG-TNLMMIDFSNNSL 232
LP L + +L L L NN + P +NG NL + NSL
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSL 184
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 102 LPNFTVIGFNSCNLSEFPYFLHNQDELVSL-DLSSNKIAGQDLLVLPWSK-MNTLDLGFN 159
L N ++ F + + + P L + V L +L+ +I D ++ + L +GFN
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103
Query: 160 KLQ--GPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFM 217
++ P ++ L L L N+LS LP + + + +L+ L + NN RI TF
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162
Query: 218 NGTNLMMIDFSNNSLQGRALILKFNNFHGEI 248
T+L + S+N L L L + FH +
Sbjct: 163 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 193
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 128 LVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNG---LQALDLSYNNLS 184
L +LDLS N++ LL + LD+ FN+L LP+ +L G LQ L L N L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK 137
Query: 185 GMLPECLGNFSVELSALKLQANNFYRIVPQTFMNG-TNLMMIDFSNNSL 232
LP L + +L L L ANN +P +NG NL + NSL
Sbjct: 138 -TLPPGLLTPTPKLEKLSL-ANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 128 LVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNG---LQALDLSYNNLS 184
L +LDLS N++ LL + LD+ FN+L LP+ +L G LQ L L N L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK 137
Query: 185 GMLPECLGNFSVELSALKLQANNFYRIVPQTFMNG-TNLMMIDFSNNSL 232
LP L + +L L L ANN +P +NG NL + NSL
Sbjct: 138 -TLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 128 LVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNG---LQALDLSYNNLS 184
L +LDLS N++ LL + LD+ FN+L LP+ +L G LQ L L N L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK 137
Query: 185 GMLPECLGNFSVELSALKLQANNFYRIVPQTFMNG-TNLMMIDFSNNSL 232
LP L + +L L L ANN +P +NG NL + NSL
Sbjct: 138 -TLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 491 SIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALE 550
+ E L +L YL + C+ I +P+ L L LE L +SGN F + P S L+SLK L
Sbjct: 191 AFEGLFNLKYLNLGMCN-IKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248
Query: 551 ISSFNFSSTLQASLGNLTQLDSLTI 575
+ + S + + L L L +
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNL 273
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 70/182 (38%), Gaps = 31/182 (17%)
Query: 474 LEDLRLSYTRFSGKIPDSIE--NLESLSYLGISDCSF---------------IGKIPSSL 516
++D +S F G S+E NL+ + IS +F + ++PS L
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL 297
Query: 517 FNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEI----SSFNFSSTLQASLGNLTQLDS 572
L+ L+ L LS N+F + S N SL L I + +L NL +LD
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD- 356
Query: 573 LTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPY---CNLNNEIPFGISNLTQLTALDLSYN 629
L NL+ L SLN Y +L E QL LDL++
Sbjct: 357 ---LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE---AFKECPQLELLDLAFT 410
Query: 630 QL 631
+L
Sbjct: 411 RL 412
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 31/198 (15%)
Query: 122 LHNQDELVSLDLSSNKIAGQDLLV-LPWSKMNTLDLGFNKLQGPLPVPSLNGLQ-----A 175
LHNQ L SL L SN I+ L P K+ LD N + L ++ LQ +
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLS 183
Query: 176 LDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFS--NNSLQ 233
L+L+ N+++G+ P G F + Q+ NF GT +++ F NS
Sbjct: 184 LNLNGNDIAGIEP---GAFDSAV----FQSLNF---------GGTQNLLVIFKGLKNSTI 227
Query: 234 GRALILKFNNFHGEIEEPQT--GFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINAS 291
+ F + E P G + I+L + F N+ S FHC++ +++++
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELD-- 284
Query: 292 KLTYLQVKLLPYDVLGFT 309
LT + LP ++G +
Sbjct: 285 -LTATHLSELPSGLVGLS 301
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 80/208 (38%), Gaps = 57/208 (27%)
Query: 428 IVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGK 487
I + C LQ + L +LQ L + N L+ F++ LE L L++TR K
Sbjct: 362 IETSDCCNLQ------LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415
Query: 488 IPDS-IENLESLSYLGISDCSFIGKIPSSLFN-LTKLEHLYLSGNRFLDELPTSIGNLAS 545
S +NL L L +S S + LF+ L L+HL L GN F P
Sbjct: 416 DAQSPFQNLHLLKVLNLSH-SLLDISSEQLFDGLPALQHLNLQGNHF----PK------- 463
Query: 546 LKALEISSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPYC 605
GN+ + +SL L +L L +C
Sbjct: 464 -------------------GNIQKTNSLQ------------------TLGRLEILVLSFC 486
Query: 606 NLNNEIPFGISNLTQLTALDLSYNQLTG 633
+L++ ++L + +DLS+N+LT
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTS 514
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 29/170 (17%)
Query: 111 NSCNLSEFPYFLHNQDELVSLDLSSNK-IAGQDLLVLPWSKMNTLDLGFNKLQ---GPLP 166
+ CNL L N L SL+LS N+ ++ + ++ LDL F +L+ P
Sbjct: 366 DCCNLQ-----LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420
Query: 167 VPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMID 226
+L+ L+ L+LS++ L + E L + L L LQ N+F P+ + TN
Sbjct: 421 FQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHF----PKGNIQKTN----- 470
Query: 227 FSNNSLQ--GR--ALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTG 272
SLQ GR L+L F + + T + + +DLSHNR T
Sbjct: 471 ----SLQTLGRLEILVLSFCDLSSIDQHAFTSLKM--MNHVDLSHNRLTS 514
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L +L+ L L +NQLT KLTQL + L +NQL+ S+P F+ LR+L + L N
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLRSLTHIWLLN 111
Query: 62 N 62
N
Sbjct: 112 N 112
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 9 LYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSNNNL 64
LYL N++T P +LTQL + L NQL +P+ +F+ L L L L++N L
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQL 90
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L L+ L L QL P L+ LQ++ +A NQL+ SVP IF+ L +LQ + L
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHT 527
Query: 62 N 62
N
Sbjct: 528 N 528
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 81/211 (38%), Gaps = 11/211 (5%)
Query: 424 FGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTR 483
FGW+ + C G+FP +L +L+ L N + S DL +
Sbjct: 304 FGWQHLELVNCKF-GQFP--TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360
Query: 484 FSGKIPDSIENLESLSYLGISDCSFIGKI--PSSLFNLTKLEHLYLSGNRFLDELPTSIG 541
F G S SL YL D SF G I S+ L +LEHL + S+
Sbjct: 361 FKGCCSQSDFGTTSLKYL---DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417
Query: 542 -NLASLKALEISSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTSL 600
+L +L L+IS + L+ L+ L + T L LT L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFL 475
Query: 601 NFPYCNLNNEIPFGISNLTQLTALDLSYNQL 631
+ C L P ++L+ L L+++ NQL
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 447 LPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGK-IPDSIENLESLSYLGISD 505
L NL +L + + F S LE L+++ F +PD L +L++L +S
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 506 CSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSI-GNLASLKAL 549
C P++ +L+ L+ L ++ N+ L +P I L SL+ +
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKI 523
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 288 INASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKGTEIEYLKLSNLIAAIIIS 342
+ +K+T LQ + +PY V G + GY D + + T++++LK NL A+I S
Sbjct: 286 LKGAKITRLQDQQVPYAVKGNQWVGYDD----VKSMETKVQFLKNLNLGGAMIWS 336
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 1 MNLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLS 60
++L +L +LYL +N++T I V + +LT+L + L +NQ+ VP + L LQ L LS
Sbjct: 131 VHLPQLESLYLGNNKITD-ITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186
Query: 61 NNNLS 65
N++S
Sbjct: 187 KNHIS 191
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDL 59
L KL TL L+ NQ++ +P + LT+LQ + L++N + S ++ L+NL L+L
Sbjct: 155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLEL 207
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
Length = 174
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 9 LYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSNNNL 64
L+L +NQ+T P L LQ + N+L ++P+ +F+ L L LDL++N+L
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHL 93
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 2 NLNKLSTLYLQHNQLTGHIPVEI-RKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDL 59
+L L LY N+LT IP + KLTQL + L +N L+ S+P F+ L++L + L
Sbjct: 55 HLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYL 112
Query: 60 SNN 62
NN
Sbjct: 113 YNN 115
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 1 MNLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLS 60
++L +L +LYL +N++T I V + +LT+L + L +NQ+ VP + L LQ L LS
Sbjct: 128 VHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 183
Query: 61 NNNLS 65
N++S
Sbjct: 184 KNHIS 188
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 9 LYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSNNNL 64
LYL NQ+T P +LTQL + L NQL +P+ +F+ L L L L++N L
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQL 90
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L +L+ L L +NQLT KLTQL + L +NQL+ S+P F+ L++L + L N
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLN 111
Query: 62 N 62
N
Sbjct: 112 N 112
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 1 MNLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLS 60
++L +L +LYL +N++T I V + +LT+L + L +NQ+ VP + L LQ L LS
Sbjct: 129 VHLPQLESLYLGNNKITD-ITV-LSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLS 184
Query: 61 NNNLS 65
N++S
Sbjct: 185 KNHIS 189
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDL 59
L KL TL L+ NQ+ +P + +LT+LQ + L++N + S + LR L+ LD+
Sbjct: 153 LTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHI-----SDLRALRGLKNLDV 202
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 101 NLPNFTVIGFNSC-NLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPW---------SK 150
NL + T + +C NL++ P FL E ++++ N+ + L W K
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVGEK 306
Query: 151 MNTLDLGFNKLQGPLPVPS----LNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQAN 206
+ + +G+N L+ PV + L L+ YN L G LP G+ ++L++L L N
Sbjct: 307 IQIIYIGYNNLK-TFPVETSLQKXKKLGXLECLYNQLEGKLP-AFGS-EIKLASLNLAYN 363
Query: 207 NFYRIVPQTFMNGTNLMM-IDFSNNSLQ 233
I P F T + + F++N L+
Sbjct: 364 QITEI-PANFCGFTEQVENLSFAHNKLK 390
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 9 LYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSNNNL 64
LYL NQ+T P +LTQL + L NQL +P+ +F+ L L L L++N L
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQL 98
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSN 61
L +L+ L L +NQLT KLTQL + L +NQL+ S+P F+ L++L + L N
Sbjct: 61 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLN 119
Query: 62 N 62
N
Sbjct: 120 N 120
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 465 LPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEH 524
+P ++ L E RLSY + E L +L YL ++ C+ + +IP+ L L KL+
Sbjct: 159 IPSLRRLDLGELKRLSYIS-----EGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDE 211
Query: 525 LYLSGNRFLDELPTSIGNLASLKAL 549
L LSGN P S L L+ L
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKL 236
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 28/193 (14%)
Query: 174 QALDLSYNNLSGM-LPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSL 232
+AL LS N++S + +P+ +F EL L+L N + F+ +L +D S+N L
Sbjct: 55 KALSLSQNSISELRMPDI--SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 233 QGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASK 292
Q + LR +DLS N F K F + + S
Sbjct: 113 QNISCC-----------------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155
Query: 293 LTYLQVKLLPYDVLGFT--YYGYADYSLTMSNKGTEIEYLKLSNLIAAIIISDKN--FVG 348
+ Q+ LLP L + Y + KG E E L++ N ++ N F
Sbjct: 156 AKFRQLDLLPVAHLHLSCILLDLVSYHI----KGGETESLQIPNTTVLHLVFHPNSLFSV 211
Query: 349 EIPTSISSLKGLR 361
++ S+++L L+
Sbjct: 212 QVNMSVNALGHLQ 224
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 5 KLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDLSNN 62
K+ L L +N++ IP ++ L LQ + +A NQL+ SVP +F+ L +LQ + L +N
Sbjct: 451 KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 1 MNLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLS 60
++L +L +LYL +N++T I V + +LT+L + L +NQ+ VP + L LQ L LS
Sbjct: 129 VHLPQLESLYLGNNKITD-ITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 184
Query: 61 NNNLS 65
N++S
Sbjct: 185 KNHIS 189
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 1 MNLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLS 60
++L +L +LYL +N++T I V + +LT+L + L +NQ+ VP + L LQ L LS
Sbjct: 126 VHLPQLESLYLGNNKITD-ITV-LSRLTKLDTLSLEDNQISDIVPLAC--LTKLQNLYLS 181
Query: 61 NNNLS 65
N++S
Sbjct: 182 KNHIS 186
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 1 MNLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLS 60
++L +L +LYL +N++T I V + +LT+L + L +NQ+ VP + L LQ L LS
Sbjct: 131 VHLPQLESLYLGNNKITD-ITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186
Query: 61 NNNLS 65
N++S
Sbjct: 187 KNHIS 191
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNN 62
L L L L+ NQLTG P + +Q ++L EN+++ L L+ L+L +N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 63 NLS 65
+S
Sbjct: 113 QIS 115
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 1 MNLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLS 60
++L +L +LYL +N++T I V + +LT+L + L +NQ+ VP + L LQ L LS
Sbjct: 151 VHLPQLESLYLGNNKITD-ITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 206
Query: 61 NNNLS 65
N++S
Sbjct: 207 KNHIS 211
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 1 MNLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLS 60
++L +L +LYL +N++T I V + +LT+L + L +NQ+ VP + L LQ L LS
Sbjct: 149 VHLPQLESLYLGNNKITD-ITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 204
Query: 61 NNNLS 65
N++S
Sbjct: 205 KNHIS 209
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 1 MNLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLS 60
++L +L +LYL +N++T I V + +LT+L + L +NQ+ VP + L LQ L LS
Sbjct: 149 VHLPQLESLYLGNNKITD-ITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 204
Query: 61 NNNLS 65
N++S
Sbjct: 205 KNHIS 209
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 1 MNLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLS 60
++L +L +LYL +N++T I V + +LT+L + L +NQ+ VP + L LQ L LS
Sbjct: 149 VHLPQLESLYLGNNKITD-ITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 204
Query: 61 NNNLS 65
N++S
Sbjct: 205 KNHIS 209
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 1 MNLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLS 60
++L +L +LYL +N++T I V + +LT+L + L +NQ+ VP + L LQ L LS
Sbjct: 126 VHLPQLESLYLGNNKITD-ITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 181
Query: 61 NNNLS 65
N++S
Sbjct: 182 KNHIS 186
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%)
Query: 488 IPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLK 547
+P + N + L+ + +S+ S N+T+L L LS NR P + L SL+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 548 ALEISSFNFSSTLQASLGNLTQLDSLTI 575
L + + S + + +L+ L L I
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAI 133
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 2 NLNKLSTLYLQHNQLTGHIPVEI-RKLTQLQIVRLAENQLEGSVPSSIFE-LRNLQALDL 59
+L +L+ L L NQLT +PV + KLT+L + L NQL+ S+P +F+ L++L + L
Sbjct: 62 SLTQLTYLNLAVNQLTA-LPVGVFDKLTKLTHLALHINQLK-SIPMGVFDNLKSLTHIYL 119
Query: 60 SNN 62
NN
Sbjct: 120 FNN 122
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 51/141 (36%), Gaps = 26/141 (18%)
Query: 491 SIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALE 550
S N L +L +S C + L L +L L+GN P S L SL+ L
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 551 ISSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPYCNLNNE 610
+S +G L L L + NF + + +
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAH-----------------------NFIH---SCK 144
Query: 611 IPFGISNLTQLTALDLSYNQL 631
+P SNLT L +DLSYN +
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYI 165
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 51/141 (36%), Gaps = 26/141 (18%)
Query: 491 SIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALE 550
S N L +L +S C + L L +L L+GN P S L SL+ L
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Query: 551 ISSFNFSSTLQASLGNLTQLDSLTIXXXXXXXXXXXXXXWLTNLNQLTSLNFPYCNLNNE 610
+S +G L L L + NF + + +
Sbjct: 106 AVETKLASLESFPIGQLITLKKLNVAH-----------------------NFIH---SCK 139
Query: 611 IPFGISNLTQLTALDLSYNQL 631
+P SNLT L +DLSYN +
Sbjct: 140 LPAYFSNLTNLVHVDLSYNYI 160
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 130 SLDLSSNKI-----------AGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDL 178
SLDLS NKI A +L+L S++NT++ SL L+ LDL
Sbjct: 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD--------AFYSLGSLEHLDL 81
Query: 179 SYNNLSGMLPECLGNFSVELSALKLQANNFYRI-VPQTFMNGTNLMMIDFSN 229
S N+LS + G S L L L N + + V F N TNL + N
Sbjct: 82 SDNHLSSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 130 SLDLSSNKI-----------AGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDL 178
SLDLS NKI A +L+L S++NT++ SL L+ LDL
Sbjct: 56 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD--------AFYSLGSLEHLDL 107
Query: 179 SYNNLSGMLPECLGNFSVELSALKLQANNFYRI-VPQTFMNGTNLMMIDFSN 229
S N+LS + G S L L L N + + V F N TNL + N
Sbjct: 108 SDNHLSSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,217,686
Number of Sequences: 62578
Number of extensions: 728784
Number of successful extensions: 2129
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1358
Number of HSP's gapped (non-prelim): 542
length of query: 693
length of database: 14,973,337
effective HSP length: 106
effective length of query: 587
effective length of database: 8,340,069
effective search space: 4895620503
effective search space used: 4895620503
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)