Query 037679
Match_columns 693
No_of_seqs 169 out of 1922
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:21:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8.2E-50 1.8E-54 473.3 38.2 516 5-685 70-589 (968)
2 PLN00113 leucine-rich repeat r 100.0 1E-47 2.2E-52 455.4 35.5 501 29-693 70-573 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.9E-36 1.3E-40 301.1 6.4 200 54-271 54-258 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.9E-34 1.1E-38 287.4 7.6 222 7-233 55-282 (873)
5 KOG0618 Serine/threonine phosp 100.0 9.6E-35 2.1E-39 307.8 -2.6 507 8-677 2-510 (1081)
6 KOG0472 Leucine-rich repeat pr 100.0 1.7E-35 3.6E-40 285.5 -14.3 492 6-680 47-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 2.9E-32 6.4E-37 289.0 -6.7 492 33-690 3-499 (1081)
8 KOG0472 Leucine-rich repeat pr 100.0 2.1E-32 4.5E-37 264.2 -9.8 245 2-271 66-310 (565)
9 KOG0444 Cytoskeletal regulator 99.9 6.3E-28 1.4E-32 244.9 -2.9 364 149-680 7-375 (1255)
10 KOG0444 Cytoskeletal regulator 99.9 1.4E-27 3E-32 242.4 -3.2 248 3-271 6-258 (1255)
11 KOG4237 Extracellular matrix p 99.9 2.2E-23 4.7E-28 201.9 -1.1 259 6-282 69-370 (498)
12 PLN03210 Resistant to P. syrin 99.8 6.4E-19 1.4E-23 209.8 30.6 155 74-231 554-715 (1153)
13 PLN03210 Resistant to P. syrin 99.8 5.9E-19 1.3E-23 210.0 25.7 197 446-655 702-905 (1153)
14 KOG4237 Extracellular matrix p 99.8 1E-20 2.2E-25 183.5 -3.8 88 169-271 65-153 (498)
15 PRK15387 E3 ubiquitin-protein 99.7 8.7E-17 1.9E-21 177.7 19.9 258 5-372 202-459 (788)
16 PRK15387 E3 ubiquitin-protein 99.7 1.2E-15 2.5E-20 168.9 18.5 114 29-162 202-315 (788)
17 cd00116 LRR_RI Leucine-rich re 99.6 4.2E-17 9.2E-22 168.8 3.0 236 444-679 47-319 (319)
18 PRK15370 E3 ubiquitin-protein 99.6 3.2E-15 6.8E-20 166.6 14.1 142 104-275 242-383 (754)
19 PRK15370 E3 ubiquitin-protein 99.6 1.3E-14 2.7E-19 161.8 12.8 203 4-233 178-380 (754)
20 cd00116 LRR_RI Leucine-rich re 99.6 1.2E-15 2.6E-20 158.0 4.4 242 441-682 16-293 (319)
21 KOG0617 Ras suppressor protein 99.4 3.2E-15 6.9E-20 129.0 -5.8 151 4-160 33-184 (264)
22 KOG0617 Ras suppressor protein 99.4 6.2E-15 1.3E-19 127.3 -5.1 153 472-632 33-186 (264)
23 KOG3207 Beta-tubulin folding c 99.2 3.2E-12 7E-17 126.8 3.2 185 25-210 118-315 (505)
24 PF14580 LRR_9: Leucine-rich r 99.1 7.9E-11 1.7E-15 107.2 6.0 105 6-116 21-126 (175)
25 KOG1909 Ran GTPase-activating 99.1 2E-11 4.3E-16 118.1 1.0 92 169-271 211-311 (382)
26 KOG3207 Beta-tubulin folding c 99.1 3.2E-11 6.9E-16 119.8 1.6 184 48-233 117-314 (505)
27 PF14580 LRR_9: Leucine-rich r 99.0 1.4E-10 3E-15 105.6 3.0 109 123-233 16-126 (175)
28 KOG1909 Ran GTPase-activating 99.0 8.4E-11 1.8E-15 113.8 -0.5 137 519-655 156-310 (382)
29 COG4886 Leucine-rich repeat (L 99.0 1.3E-09 2.8E-14 116.2 8.2 192 32-233 97-290 (394)
30 KOG1259 Nischarin, modulator o 98.9 4.6E-10 1E-14 106.1 1.8 132 77-212 283-415 (490)
31 COG4886 Leucine-rich repeat (L 98.9 3.2E-09 7E-14 113.1 7.1 200 8-217 97-298 (394)
32 KOG1259 Nischarin, modulator o 98.8 6E-10 1.3E-14 105.3 0.6 223 27-272 181-413 (490)
33 KOG0531 Protein phosphatase 1, 98.8 1E-09 2.2E-14 117.0 0.1 216 3-232 71-289 (414)
34 PF13855 LRR_8: Leucine rich r 98.8 4.5E-09 9.7E-14 78.5 3.1 61 4-64 1-61 (61)
35 KOG0532 Leucine-rich repeat (L 98.8 2.7E-10 5.9E-15 116.8 -5.0 176 26-210 73-248 (722)
36 KOG0532 Leucine-rich repeat (L 98.8 2.9E-10 6.3E-15 116.6 -5.0 190 475-677 78-270 (722)
37 KOG4658 Apoptotic ATPase [Sign 98.7 1.3E-08 2.7E-13 116.1 6.1 180 2-186 543-732 (889)
38 PLN03150 hypothetical protein; 98.7 4.8E-08 1.1E-12 109.1 10.0 109 29-140 419-529 (623)
39 KOG0531 Protein phosphatase 1, 98.7 4.5E-09 9.8E-14 112.1 1.7 218 2-232 93-317 (414)
40 KOG4658 Apoptotic ATPase [Sign 98.7 2.6E-08 5.6E-13 113.6 7.0 244 5-271 524-783 (889)
41 KOG4341 F-box protein containi 98.7 2.1E-09 4.6E-14 106.5 -1.6 87 52-138 138-228 (483)
42 PF13855 LRR_8: Leucine rich r 98.7 1.2E-08 2.7E-13 76.1 2.5 61 28-90 1-61 (61)
43 PLN03150 hypothetical protein; 98.6 5.2E-08 1.1E-12 108.8 7.5 114 569-685 419-533 (623)
44 KOG2982 Uncharacterized conser 98.5 3.6E-08 7.9E-13 93.5 2.1 203 29-233 46-262 (418)
45 KOG2120 SCF ubiquitin ligase, 98.4 4.6E-08 1E-12 92.9 0.0 176 6-181 187-373 (419)
46 KOG2120 SCF ubiquitin ligase, 98.3 3.9E-08 8.5E-13 93.3 -2.6 174 29-207 186-374 (419)
47 KOG1859 Leucine-rich repeat pr 98.3 1.8E-08 3.8E-13 106.5 -5.5 178 21-209 102-292 (1096)
48 KOG2982 Uncharacterized conser 98.2 1.3E-06 2.8E-11 83.2 4.0 246 422-673 24-285 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.1 9.6E-07 2.1E-11 83.0 1.9 240 23-271 25-316 (388)
50 KOG1859 Leucine-rich repeat pr 98.1 8.2E-08 1.8E-12 101.6 -6.3 126 6-140 166-293 (1096)
51 KOG3665 ZYG-1-like serine/thre 98.1 1.5E-06 3.3E-11 96.8 2.6 136 52-188 122-267 (699)
52 KOG4341 F-box protein containi 97.9 1.5E-06 3.2E-11 86.8 -1.2 255 2-271 162-439 (483)
53 COG5238 RNA1 Ran GTPase-activa 97.9 1.3E-05 2.7E-10 75.7 3.8 163 516-678 88-283 (388)
54 KOG1644 U2-associated snRNP A' 97.8 4.1E-05 9E-10 69.3 6.1 131 129-271 22-153 (233)
55 PF12799 LRR_4: Leucine Rich r 97.8 2.7E-05 5.8E-10 53.1 3.7 38 103-140 1-38 (44)
56 KOG1644 U2-associated snRNP A' 97.8 4.6E-05 9.9E-10 69.0 5.9 106 28-137 42-151 (233)
57 KOG4579 Leucine-rich repeat (L 97.8 2.8E-06 6.1E-11 71.6 -1.6 135 545-685 28-164 (177)
58 KOG4579 Leucine-rich repeat (L 97.7 3E-06 6.5E-11 71.4 -2.1 108 569-680 28-136 (177)
59 PF12799 LRR_4: Leucine Rich r 97.7 4E-05 8.7E-10 52.2 3.6 39 644-684 2-40 (44)
60 PRK15386 type III secretion pr 97.7 0.00016 3.5E-09 74.4 9.0 137 469-629 49-187 (426)
61 PRK15386 type III secretion pr 97.6 0.00021 4.5E-09 73.6 9.3 139 492-654 48-188 (426)
62 KOG3665 ZYG-1-like serine/thre 97.6 5.5E-05 1.2E-09 84.6 4.7 132 28-163 122-264 (699)
63 PF13306 LRR_5: Leucine rich r 97.5 0.00017 3.7E-09 63.2 6.2 108 20-135 4-112 (129)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00042 9.2E-09 60.6 6.6 119 2-129 10-129 (129)
65 KOG1947 Leucine rich repeat pr 97.3 4.8E-05 1E-09 83.6 -0.2 133 446-578 186-331 (482)
66 KOG1947 Leucine rich repeat pr 97.1 0.00018 3.8E-09 79.1 1.5 115 25-139 185-308 (482)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00036 7.7E-09 66.2 2.7 87 49-140 40-130 (260)
68 KOG2123 Uncharacterized conser 97.0 5.9E-05 1.3E-09 71.5 -3.2 101 27-133 18-124 (388)
69 KOG2739 Leucine-rich acidic nu 96.8 0.00068 1.5E-08 64.3 2.6 104 496-601 43-149 (260)
70 KOG2123 Uncharacterized conser 96.8 9.8E-05 2.1E-09 70.1 -3.7 97 77-177 18-123 (388)
71 PF00560 LRR_1: Leucine Rich R 95.8 0.0038 8.3E-08 35.3 0.9 22 668-690 1-22 (22)
72 KOG3864 Uncharacterized conser 94.5 0.005 1.1E-07 56.2 -1.9 79 570-651 103-184 (221)
73 KOG4308 LRR-containing protein 94.2 0.0007 1.5E-08 72.6 -9.6 136 545-680 145-303 (478)
74 KOG4308 LRR-containing protein 93.4 0.0016 3.5E-08 69.8 -8.6 189 6-211 89-305 (478)
75 KOG3864 Uncharacterized conser 92.9 0.026 5.6E-07 51.7 -0.4 83 28-112 101-185 (221)
76 PF13504 LRR_7: Leucine rich r 92.8 0.077 1.7E-06 27.7 1.5 17 667-684 1-17 (17)
77 PF00560 LRR_1: Leucine Rich R 92.7 0.048 1E-06 30.7 0.7 18 105-122 2-19 (22)
78 smart00370 LRR Leucine-rich re 90.9 0.18 3.8E-06 29.7 1.8 23 666-689 1-23 (26)
79 smart00369 LRR_TYP Leucine-ric 90.9 0.18 3.8E-06 29.7 1.8 23 666-689 1-23 (26)
80 PF13504 LRR_7: Leucine rich r 90.8 0.17 3.6E-06 26.4 1.5 13 105-117 3-15 (17)
81 smart00369 LRR_TYP Leucine-ric 84.9 0.78 1.7E-05 26.9 1.9 16 28-43 2-17 (26)
82 smart00370 LRR Leucine-rich re 84.9 0.78 1.7E-05 26.9 1.9 16 28-43 2-17 (26)
83 PF13516 LRR_6: Leucine Rich r 83.3 0.62 1.3E-05 26.7 1.0 20 78-97 2-21 (24)
84 KOG0473 Leucine-rich repeat pr 80.4 0.055 1.2E-06 50.6 -6.3 100 11-116 25-124 (326)
85 KOG0473 Leucine-rich repeat pr 77.4 0.072 1.6E-06 49.8 -6.5 93 43-140 33-125 (326)
86 smart00364 LRR_BAC Leucine-ric 74.7 2.1 4.5E-05 25.2 1.3 20 667-687 2-21 (26)
87 smart00368 LRR_RI Leucine rich 70.1 3.8 8.2E-05 24.6 1.8 20 78-97 2-21 (28)
88 smart00365 LRR_SD22 Leucine-ri 65.0 5.8 0.00013 23.4 1.9 14 28-41 2-15 (26)
89 KOG3763 mRNA export factor TAP 55.7 7.6 0.00016 41.7 2.1 66 122-187 214-286 (585)
90 KOG3763 mRNA export factor TAP 55.0 12 0.00026 40.3 3.4 65 75-140 215-284 (585)
91 smart00367 LRR_CC Leucine-rich 52.0 11 0.00024 22.0 1.6 15 448-462 2-16 (26)
92 KOG4242 Predicted myosin-I-bin 44.8 1.4E+02 0.003 31.9 9.0 231 29-271 215-481 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.2e-50 Score=473.30 Aligned_cols=516 Identities=31% Similarity=0.456 Sum_probs=279.5
Q ss_pred CccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCcc-ccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEE
Q 037679 5 KLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSS-IFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTAL 83 (693)
Q Consensus 5 ~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L 83 (693)
+++.|+++++.+++..+.+|..+++|++|++++|.+++.+|.. +.++.+|++|++++|.+.+..| ...+++|++|
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~l~~L~~L 145 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP----RGSIPNLETL 145 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC----ccccCCCCEE
Confidence 3444555555544444445555555555555555444333332 2245555555555554444333 1234455555
Q ss_pred ECCCCcCCchhhhhhhcCCCCCcEEeccCCCCC-chhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCC
Q 037679 84 VLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLS-EFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQ 162 (693)
Q Consensus 84 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 162 (693)
++++|.+....+..+. .+++|++|++++|.+. .+|..++++++|++|++++|.+ .
T Consensus 146 ~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l-----------------------~ 201 (968)
T PLN00113 146 DLSNNMLSGEIPNDIG-SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL-----------------------V 201 (968)
T ss_pred ECcCCcccccCChHHh-cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC-----------------------c
Confidence 5555544444444444 4455555555554443 3444444555555555555444 4
Q ss_pred CCCCC--CCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeec
Q 037679 163 GPLPV--PSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILK 240 (693)
Q Consensus 163 ~~~~~--~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~ 240 (693)
+..+. ..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+....|..+..+++|++|++++|+++
T Consensus 202 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------- 273 (968)
T PLN00113 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT-SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS------- 273 (968)
T ss_pred CcCChHHcCcCCccEEECcCCccCCcCChhHhcCC-CCCEEECcCceeccccChhHhCCCCCCEEECcCCeee-------
Confidence 33322 2445555555555555555555555555 5555555555555555555555555555555555442
Q ss_pred ccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceee
Q 037679 241 FNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTM 320 (693)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (693)
+..+.. +..+++|+.|++++|.+.+.+|.. +..
T Consensus 274 -----~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~-~~~--------------------------------------- 306 (968)
T PLN00113 274 -----GPIPPS--IFSLQKLISLDLSDNSLSGEIPEL-VIQ--------------------------------------- 306 (968)
T ss_pred -----ccCchh--HhhccCcCEEECcCCeeccCCChh-HcC---------------------------------------
Confidence 112211 134455555555555554433321 111
Q ss_pred cCCCchhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCCcCCCc
Q 037679 321 SNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLCGEPL 400 (693)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 400 (693)
+.+|+.|++++|.+.+..|.++..+++|++|++++|.+..
T Consensus 307 ------------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------------------------- 346 (968)
T PLN00113 307 ------------LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG---------------------------- 346 (968)
T ss_pred ------------CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC----------------------------
Confidence 1234445555555555555555566666666666555442
Q ss_pred cccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcccccccccCCeeEec
Q 037679 401 SRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLS 480 (693)
Q Consensus 401 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 480 (693)
.+|..+..+++|+.|+++.|......+..+..++.|+.++++
T Consensus 347 --------------------------------------~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 388 (968)
T PLN00113 347 --------------------------------------EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388 (968)
T ss_pred --------------------------------------cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence 123334445555555555553222222234445556666666
Q ss_pred ccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccc
Q 037679 481 YTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTL 560 (693)
Q Consensus 481 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 560 (693)
+|.+.+..+..+..+++|+.|++++|.++...|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..
T Consensus 389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 468 (968)
T PLN00113 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL 468 (968)
T ss_pred CCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec
Confidence 66666555666666666666666666666556666666666666666666666655555556666666666666665554
Q ss_pred hhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCcccccc
Q 037679 561 QASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLM 640 (693)
Q Consensus 561 ~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 640 (693)
+..+ ..++|+.|++++|.+....+. .+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.+++.+|..+.
T Consensus 469 p~~~-~~~~L~~L~ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 469 PDSF-GSKRLENLDLSRNQFSGAVPR---KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred Cccc-ccccceEEECcCCccCCccCh---hhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence 4433 335666666666666544333 234556666677777766666666666667777777777776666666666
Q ss_pred CcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCccC
Q 037679 641 KLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVPS 685 (693)
Q Consensus 641 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 685 (693)
.+++|+.|++++|++.+.+|..+..+++|++|++++|++.+.+|+
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 666777777777777666666666677777777777776666664
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-47 Score=455.40 Aligned_cols=501 Identities=30% Similarity=0.440 Sum_probs=400.3
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEE
Q 037679 29 QLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVI 108 (693)
Q Consensus 29 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 108 (693)
+++.|++++|.+++..+.+|..+++|++|++++|++.+.+|.. .+..+.+|++|++++|.++...+.. .+++|++|
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~-~~~~l~~L~~L~Ls~n~l~~~~p~~---~l~~L~~L 145 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDD-IFTTSSSLRYLNLSNNNFTGSIPRG---SIPNLETL 145 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChH-HhccCCCCCEEECcCCccccccCcc---ccCCCCEE
Confidence 4555566555555555555555666666666655555444433 2335555666666555554433321 44555555
Q ss_pred eccCCCCC-chhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCC--CCCCCCCCEEeCCCCCCCC
Q 037679 109 GFNSCNLS-EFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLP--VPSLNGLQALDLSYNNLSG 185 (693)
Q Consensus 109 ~l~~~~l~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~L~~~~i~~ 185 (693)
++++|.+. .+|..++++++|++|++++|.+ .+..+ +..+++|++|++++|.+.+
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l-----------------------~~~~p~~~~~l~~L~~L~L~~n~l~~ 202 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL-----------------------VGKIPNSLTNLTSLEFLTLASNQLVG 202 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcc-----------------------cccCChhhhhCcCCCeeeccCCCCcC
Confidence 55555554 3444455555555555555544 33333 3478899999999999998
Q ss_pred CcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecccccCCCCCCCccCCCCCCceEEec
Q 037679 186 MLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDL 265 (693)
Q Consensus 186 ~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 265 (693)
..|..+..+. +|+.|++++|.+....|..+..+++|++|++++|.++ +..+. .+.++++|+.|++
T Consensus 203 ~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------------~~~p~--~l~~l~~L~~L~L 267 (968)
T PLN00113 203 QIPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT------------GPIPS--SLGNLKNLQYLFL 267 (968)
T ss_pred cCChHHcCcC-CccEEECcCCccCCcCChhHhcCCCCCEEECcCceec------------cccCh--hHhCCCCCCEEEC
Confidence 9999999999 9999999999999999999999999999999999875 23333 3478999999999
Q ss_pred CCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceeecCCCchhhhhhhhhhhhheeecCCc
Q 037679 266 SHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKGTEIEYLKLSNLIAAIIISDKN 345 (693)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 345 (693)
++|++.+.+|..+ . .+..|++|++++|.
T Consensus 268 ~~n~l~~~~p~~l-~---------------------------------------------------~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 268 YQNKLSGPIPPSI-F---------------------------------------------------SLQKLISLDLSDNS 295 (968)
T ss_pred cCCeeeccCchhH-h---------------------------------------------------hccCcCEEECcCCe
Confidence 9999887666432 1 13457889999999
Q ss_pred ccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCCcCCCccccCCCCCCCCCCCCCCcccccccc
Q 037679 346 FVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLCGEPLSRKCGNSEASPVEDDPPSESVLAFG 425 (693)
Q Consensus 346 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 425 (693)
+.+..|.++..+++|++|++++|.+.+
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~----------------------------------------------------- 322 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTG----------------------------------------------------- 322 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCC-----------------------------------------------------
Confidence 998899999999999999999888763
Q ss_pred eEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCCcEEeccC
Q 037679 426 WKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISD 505 (693)
Q Consensus 426 ~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 505 (693)
..|..+..+++|+.|++.+|......+..+..+++|+.|++++|.+.+..+..+..+++|+.|++.+
T Consensus 323 -------------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 323 -------------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389 (968)
T ss_pred -------------cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC
Confidence 3345566789999999999954334444588899999999999999988888999999999999999
Q ss_pred CcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCcEEecccCCCCcccc
Q 037679 506 CSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMS 585 (693)
Q Consensus 506 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 585 (693)
|.+....|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+
T Consensus 390 n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred CEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence 99998899999999999999999999988889999999999999999999998887778889999999999998876544
Q ss_pred chhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhcC
Q 037679 586 SSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISN 665 (693)
Q Consensus 586 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 665 (693)
.. ...++|+.|++++|++.+..|..+.++++|+.|++++|.+.+.+|..+.++++|+.|++++|++++.+|..+..
T Consensus 470 ~~----~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 545 (968)
T PLN00113 470 DS----FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545 (968)
T ss_pred cc----cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC
Confidence 32 24588999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CCCCCeEEccCCcccCCccCccccccCC
Q 037679 666 LTQLQSLQLSSNQLEGSVPSSIFELRNL 693 (693)
Q Consensus 666 l~~L~~L~l~~n~~~~~~p~~~~~~~~l 693 (693)
+++|++||+++|++.+.+|+.+.+++.|
T Consensus 546 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 573 (968)
T PLN00113 546 MPVLSQLDLSQNQLSGEIPKNLGNVESL 573 (968)
T ss_pred cccCCEEECCCCcccccCChhHhcCccc
Confidence 9999999999999999999988877643
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-36 Score=301.15 Aligned_cols=200 Identities=26% Similarity=0.339 Sum_probs=153.8
Q ss_pred CcEEECCCCcCCCcccHHHHhhcC--CCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEE
Q 037679 54 LQALDLSNNNLSGTVDLNMLLLNL--KSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSL 131 (693)
Q Consensus 54 L~~L~Ls~n~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L 131 (693)
-+.||.+.+.+....... +.++ +.-+.|++++|.+.+..+..|- ++++|+.+++..|.++.+|.+.+...+|+.|
T Consensus 54 ~~lldcs~~~lea~~~~~--l~g~lp~~t~~LdlsnNkl~~id~~~f~-nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSR--LKGFLPSQTQTLDLSNNKLSHIDFEFFY-NLPNLQEVNLNKNELTRIPRFGHESGHLEKL 130 (873)
T ss_pred ceeeecCccccccccccc--cCCcCccceeeeeccccccccCcHHHHh-cCCcceeeeeccchhhhcccccccccceeEE
Confidence 345778887776443322 3332 3456699999999988888777 9999999999999999999987888889999
Q ss_pred EcCCCCCCCCCCCc-cCCCCCcEEeCCCCCCCCCC--CCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccc
Q 037679 132 DLSSNKIAGQDLLV-LPWSKMNTLDLGFNKLQGPL--PVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNF 208 (693)
Q Consensus 132 ~L~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i 208 (693)
+|.+|.|+++.... ..++.|+.|+++.|.+.... .+..-.++++|+|++|.|+.+...+|..+. +|..|.|+.|++
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln-sL~tlkLsrNri 209 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN-SLLTLKLSRNRI 209 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccc-hheeeecccCcc
Confidence 99999999876544 37788888888888887432 223556788888888888888888888888 888888888888
Q ss_pred cccccccccCCCCccEEEccCCcCCCceeeecccccCCCCCCCccCCCCCCceEEecCCCccc
Q 037679 209 YRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271 (693)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (693)
+.+++..|..+++|+.|+|..|++. +..+.+|..+++|+.|.+..|.+.
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~ir--------------ive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIR--------------IVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred cccCHHHhhhcchhhhhhcccccee--------------eehhhhhcCchhhhhhhhhhcCcc
Confidence 8888888888888888888887763 445666666666666666666554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-34 Score=287.38 Aligned_cols=222 Identities=23% Similarity=0.274 Sum_probs=123.3
Q ss_pred cEEEcccccccCccchhhccC--CCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEE
Q 037679 7 STLYLQHNQLTGHIPVEIRKL--TQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALV 84 (693)
Q Consensus 7 ~~L~ls~~~l~~~~~~~~~~~--~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~ 84 (693)
+.|+.+++++..+-...+.++ ..-+.||+++|.++.+.++.|.++++|+.+++..|.++.... . -....+|++|+
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~-f--~~~sghl~~L~ 131 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPR-F--GHESGHLEKLD 131 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccc-c--cccccceeEEe
Confidence 445555555554333333332 223346666666665556666666666666666666553222 1 12234566666
Q ss_pred CCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCCCCCCCCCCCcc-CCCCCcEEeCCCCCCC
Q 037679 85 LSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSSNKIAGQDLLVL-PWSKMNTLDLGFNKLQ 162 (693)
Q Consensus 85 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~ 162 (693)
|.+|.|+....+.+. -++.||.|||+.|.++.+|. .+..-.++++|+|++|.|++++...| .+.+|..|.+++|+++
T Consensus 132 L~~N~I~sv~se~L~-~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 132 LRHNLISSVTSEELS-ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred eeccccccccHHHHH-hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence 666666655555555 56666666666666665543 34444556666666666666555554 5556666666666665
Q ss_pred CCCCCC--CCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCC
Q 037679 163 GPLPVP--SLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQ 233 (693)
Q Consensus 163 ~~~~~~--~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~ 233 (693)
..-... .+++|+.|+|..|.|.....-.|.+++ +|+.|.+..|+|.+...++|-.+.++++|+|..|+++
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~-Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLP-SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeehhhhhcCch-hhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 322221 356666666666666544345556666 6666666666666666666666666666666666554
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=9.6e-35 Score=307.81 Aligned_cols=507 Identities=24% Similarity=0.282 Sum_probs=397.9
Q ss_pred EEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCC
Q 037679 8 TLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSS 87 (693)
Q Consensus 8 ~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~ 87 (693)
.+|++...+. .+|..+.....+..|++++|..-....+++.+.-+|+.||+|+|++. ..|.. +..+++|+.|+++.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~--it~l~~L~~ln~s~ 77 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQ--ITLLSHLRQLNLSR 77 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCch--hhhHHHHhhcccch
Confidence 3577777777 67777777777999999999877556678888888999999999876 55655 78899999999999
Q ss_pred CcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCC
Q 037679 88 NKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPV 167 (693)
Q Consensus 88 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 167 (693)
|.|.... .+.. ++.+|+++.|.+|++..+|..+..+.+|+.|++++|++..++.....+..++.+.+++|.-....+.
T Consensus 78 n~i~~vp-~s~~-~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~ 155 (1081)
T KOG0618|consen 78 NYIRSVP-SSCS-NMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ 155 (1081)
T ss_pred hhHhhCc-hhhh-hhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc
Confidence 9987555 4555 8999999999999999999999999999999999999999888888999999999999922222222
Q ss_pred CCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecccccCCC
Q 037679 168 PSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGE 247 (693)
Q Consensus 168 ~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~ 247 (693)
. .++++++..+.+.+.++.+...+. + .|+|++|.+... .+..+++|+.|....|++...
T Consensus 156 ~---~ik~~~l~~n~l~~~~~~~i~~l~-~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l------------ 214 (1081)
T KOG0618|consen 156 T---SIKKLDLRLNVLGGSFLIDIYNLT-H--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSEL------------ 214 (1081)
T ss_pred c---cchhhhhhhhhcccchhcchhhhh-e--eeecccchhhhh---hhhhccchhhhhhhhcccceE------------
Confidence 2 288999999999988888888777 5 799999988733 355778999999998887521
Q ss_pred CCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceeecCCCchh
Q 037679 248 IEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKGTEI 327 (693)
Q Consensus 248 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (693)
...-++++.|+.+.|.++...+.
T Consensus 215 ------~~~g~~l~~L~a~~n~l~~~~~~--------------------------------------------------- 237 (1081)
T KOG0618|consen 215 ------EISGPSLTALYADHNPLTTLDVH--------------------------------------------------- 237 (1081)
T ss_pred ------EecCcchheeeeccCcceeeccc---------------------------------------------------
Confidence 13456788888888887722221
Q ss_pred hhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCCcCCCccccCCCC
Q 037679 328 EYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLCGEPLSRKCGNS 407 (693)
Q Consensus 328 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~c~~~ 407 (693)
+.+.+++.+|++.+.+.+ +|+|++.|.+|+.+...+|.++
T Consensus 238 ---p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~------------------------------------ 277 (1081)
T KOG0618|consen 238 ---PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV------------------------------------ 277 (1081)
T ss_pred ---cccccceeeecchhhhhc-chHHHHhcccceEecccchhHH------------------------------------
Confidence 114678999999999984 5699999999999999999986
Q ss_pred CCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCC
Q 037679 408 EASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGK 487 (693)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 487 (693)
.+|..++...+|++|.+..| .+...++...+.+.|+.|++..|.+...
T Consensus 278 -------------------------------~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~l 325 (1081)
T KOG0618|consen 278 -------------------------------ALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSL 325 (1081)
T ss_pred -------------------------------hhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhcccccc
Confidence 35666777888999988888 4555555566788999999999998854
Q ss_pred chhhhhcCCC-CcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccchhccCC
Q 037679 488 IPDSIENLES-LSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGN 566 (693)
Q Consensus 488 ~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 566 (693)
....+..... +..++.+.+.+.......=...+.|+.|++.+|.+++.....+.+.++||.|++++|++.......+.+
T Consensus 326 p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k 405 (1081)
T KOG0618|consen 326 PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK 405 (1081)
T ss_pred chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhc
Confidence 4434433333 666777776655332111234677999999999998888888889999999999999998888888899
Q ss_pred CCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCC-ccccccCcCcc
Q 037679 567 LTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGP-IPYSLMKLKKV 645 (693)
Q Consensus 567 l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L 645 (693)
+..|++|++|+|.+..++.. +..+..|++|...+|.+. ..| .+..++.|+.+|++.|.+... +|..++. ++|
T Consensus 406 le~LeeL~LSGNkL~~Lp~t----va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~L 478 (1081)
T KOG0618|consen 406 LEELEELNLSGNKLTTLPDT----VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNL 478 (1081)
T ss_pred hHHhHHHhcccchhhhhhHH----HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-ccc
Confidence 99999999999998877643 457788999999999887 667 678899999999999988643 3433332 789
Q ss_pred cEEeccCccCCCCcchhhcCCCCCCeEEccCC
Q 037679 646 SSLLLGFNQLSGRIPVEISNLTQLQSLQLSSN 677 (693)
Q Consensus 646 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 677 (693)
++|+++||.-....-..|..+.++...|+.-+
T Consensus 479 kyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 479 KYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 99999999865566667777777777777655
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=1.7e-35 Score=285.52 Aligned_cols=492 Identities=25% Similarity=0.335 Sum_probs=298.9
Q ss_pred ccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 6 l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
+..+.+++|.+. ++..++.++..|.+|++.+|+.+ ..|.++..+..++.++.|+|++. ..|.. +..+.+|+++++
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~--i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQ--IGSLISLVKLDC 121 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHH--Hhhhhhhhhhhc
Confidence 344555555555 44445555555555555555555 44555555555555555555554 33333 455555555555
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPL 165 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 165 (693)
++|......+ .++ ++-.|..++..+|++.++|..+.++.++..+++.+|+++..+....
T Consensus 122 s~n~~~el~~-~i~-~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i------------------- 180 (565)
T KOG0472|consen 122 SSNELKELPD-SIG-RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI------------------- 180 (565)
T ss_pred cccceeecCc-hHH-HHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-------------------
Confidence 5555443332 222 4555555555555555555555555555555555555554322222
Q ss_pred CCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecccccC
Q 037679 166 PVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFH 245 (693)
Q Consensus 166 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~ 245 (693)
.++.|++++...|-++ ..|..++.+. +|..|+++.|+|...+ .|..+..|.++.++.|++.
T Consensus 181 ---~m~~L~~ld~~~N~L~-tlP~~lg~l~-~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~------------ 241 (565)
T KOG0472|consen 181 ---AMKRLKHLDCNSNLLE-TLPPELGGLE-SLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIE------------ 241 (565)
T ss_pred ---HHHHHHhcccchhhhh-cCChhhcchh-hhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHH------------
Confidence 4556666676666655 5566777787 7888888888776553 6777888888888877764
Q ss_pred CCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceeecCCCc
Q 037679 246 GEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKGT 325 (693)
Q Consensus 246 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (693)
..+ .....+++.+..||+..|++. +.|...
T Consensus 242 -~lp-ae~~~~L~~l~vLDLRdNklk-e~Pde~----------------------------------------------- 271 (565)
T KOG0472|consen 242 -MLP-AEHLKHLNSLLVLDLRDNKLK-EVPDEI----------------------------------------------- 271 (565)
T ss_pred -hhH-HHHhcccccceeeeccccccc-cCchHH-----------------------------------------------
Confidence 222 222346777888888888877 555431
Q ss_pred hhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCCcCCCccccCC
Q 037679 326 EIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLCGEPLSRKCG 405 (693)
Q Consensus 326 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~c~ 405 (693)
..++++..||+++|.++ ..|..++++ +|+.|.+.+|++.. +-.
T Consensus 272 -----clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT--iRr---------------------------- 314 (565)
T KOG0472|consen 272 -----CLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT--IRR---------------------------- 314 (565)
T ss_pred -----HHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH--HHH----------------------------
Confidence 11355667777777776 456677777 78888888777652 100
Q ss_pred CCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeec-ccCCCcCCCcccccccccCCeeEeccccc
Q 037679 406 NSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGV-MKNPNLTGYLPQFQKSSLLEDLRLSYTRF 484 (693)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 484 (693)
.|-.|+.. .-||+|.= ..|..+...-+ .+-...+...
T Consensus 315 ------------------------~ii~~gT~----------~vLKyLrs~~~~dglS~se~-----~~e~~~t~~~--- 352 (565)
T KOG0472|consen 315 ------------------------EIISKGTQ----------EVLKYLRSKIKDDGLSQSEG-----GTETAMTLPS--- 352 (565)
T ss_pred ------------------------HHHcccHH----------HHHHHHHHhhccCCCCCCcc-----cccccCCCCC---
Confidence 00011111 11222211 00100000000 0000000000
Q ss_pred CCCchhhhhcCCCCcEEeccCCccccccccccccc--CCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccchh
Q 037679 485 SGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNL--TKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQA 562 (693)
Q Consensus 485 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 562 (693)
........+.+.+.|++++-.++.+..+.|..- .-....++++|++ ...|..+..++.+...-+..++..+..+.
T Consensus 353 --~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL-~elPk~L~~lkelvT~l~lsnn~isfv~~ 429 (565)
T KOG0472|consen 353 --ESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQL-CELPKRLVELKELVTDLVLSNNKISFVPL 429 (565)
T ss_pred --CcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchH-hhhhhhhHHHHHHHHHHHhhcCccccchH
Confidence 011122334566777777766664444444332 2367788888887 56666665555544433334444556667
Q ss_pred ccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCc
Q 037679 563 SLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKL 642 (693)
Q Consensus 563 ~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 642 (693)
.++.+++|..|++++|.+-+++.+ +..+..|++|++++|++. ..|..+..+..+|.+-.++|++....|..+.+.
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln~LP~e----~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLNDLPEE----MGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred HHHhhhcceeeecccchhhhcchh----hhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 788889999999999887766554 346777999999999887 778887888888888888899986777778889
Q ss_pred CcccEEeccCccCCCCcchhhcCCCCCCeEEccCCccc
Q 037679 643 KKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLE 680 (693)
Q Consensus 643 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 680 (693)
.+|..|++.+|.+. .+|..++++.+|++|++++|||.
T Consensus 505 ~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 99999999999998 79999999999999999999997
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=2.9e-32 Score=289.03 Aligned_cols=492 Identities=24% Similarity=0.303 Sum_probs=370.0
Q ss_pred EEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccC
Q 037679 33 VRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNS 112 (693)
Q Consensus 33 L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~ 112 (693)
+|.+...+. .+|.-+.+-..++.|+++.|-+.... .+++.+.-+|+.|++++|.+...+. .+. .+++|+.|+++.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~p--l~~~~~~v~L~~l~lsnn~~~~fp~-~it-~l~~L~~ln~s~ 77 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRP--LEFVEKRVKLKSLDLSNNQISSFPI-QIT-LLSHLRQLNLSR 77 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCc--hHHhhheeeeEEeeccccccccCCc-hhh-hHHHHhhcccch
Confidence 466666666 67777888777999999998766433 2346677779999999998875543 344 788999999999
Q ss_pred CCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCC-CCCCCCCCCCCEEeCCCCCCCCCccccc
Q 037679 113 CNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQG-PLPVPSLNGLQALDLSYNNLSGMLPECL 191 (693)
Q Consensus 113 ~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~l~~L~~L~L~~~~i~~~~~~~~ 191 (693)
|.+..+|.+..++.+|++++|.+|..+..+.....+++|++|++++|.+.. ......+..++.+..++|..... +
T Consensus 78 n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~----l 153 (1081)
T KOG0618|consen 78 NYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQR----L 153 (1081)
T ss_pred hhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhh----h
Confidence 999999999999999999999999999877777889999999999998873 22334777888888888832212 2
Q ss_pred ccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecccccCCCCCCCccCCCCCCceEEecCCCccc
Q 037679 192 GNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271 (693)
Q Consensus 192 ~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (693)
+.. .++.++++.+.+....+.+...+.. .||+.+|.+. .....++++|+.|....|++.
T Consensus 154 g~~--~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-----------------~~dls~~~~l~~l~c~rn~ls 212 (1081)
T KOG0618|consen 154 GQT--SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-----------------VLDLSNLANLEVLHCERNQLS 212 (1081)
T ss_pred ccc--cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-----------------hhhhhhccchhhhhhhhcccc
Confidence 222 3777888888887776666665555 6889888764 122256778888888888765
Q ss_pred CCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceeecCCCchhhhhhhhhhhhheeecCCcccccCC
Q 037679 272 GNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKGTEIEYLKLSNLIAAIIISDKNFVGEIP 351 (693)
Q Consensus 272 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 351 (693)
. +.. . ...++.++.+.|.+....
T Consensus 213 ~-l~~----~---------------------------------------------------g~~l~~L~a~~n~l~~~~- 235 (1081)
T KOG0618|consen 213 E-LEI----S---------------------------------------------------GPSLTALYADHNPLTTLD- 235 (1081)
T ss_pred e-EEe----c---------------------------------------------------CcchheeeeccCcceeec-
Confidence 1 110 0 134677777777777322
Q ss_pred hhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCCcCCCccccCCCCCCCCCCCCCCcccccccceEEEEe
Q 037679 352 TSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLCGEPLSRKCGNSEASPVEDDPPSESVLAFGWKIVLA 431 (693)
Q Consensus 352 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (693)
....-.+|+++++++|++..
T Consensus 236 -~~p~p~nl~~~dis~n~l~~----------------------------------------------------------- 255 (1081)
T KOG0618|consen 236 -VHPVPLNLQYLDISHNNLSN----------------------------------------------------------- 255 (1081)
T ss_pred -cccccccceeeecchhhhhc-----------------------------------------------------------
Confidence 23345689999999998772
Q ss_pred cCCCcccccCccccCCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCccccc
Q 037679 432 GGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGK 511 (693)
Q Consensus 432 ~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 511 (693)
+|..+..+.+|+.+++..| .++..+..+...++|+.+.+.+|.+. -.+...+++.+|+.|++..|.+..-
T Consensus 256 --------lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~l 325 (1081)
T KOG0618|consen 256 --------LPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSL 325 (1081)
T ss_pred --------chHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccccc
Confidence 4555667899999999999 45555556788889999999999988 4556667789999999999987643
Q ss_pred ccccccccCC-CcEEEeeCCcCCCCccccc--cCCccccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchh
Q 037679 512 IPSSLFNLTK-LEHLYLSGNRFLDELPTSI--GNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSL 588 (693)
Q Consensus 512 ~~~~~~~l~~-L~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~ 588 (693)
....+..... |+.++.+.+++.. .| .+ ...+.|+.|.+.+|.+.......+.+..+|+.|++++|.+...++..
T Consensus 326 p~~~l~v~~~~l~~ln~s~n~l~~-lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~- 402 (1081)
T KOG0618|consen 326 PDNFLAVLNASLNTLNVSSNKLST-LP-SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASK- 402 (1081)
T ss_pred chHHHhhhhHHHHHHhhhhccccc-cc-cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHH-
Confidence 3333344443 7888888888733 33 22 23688999999999999887778899999999999999988776653
Q ss_pred HhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCCCC-cchhhcCCC
Q 037679 589 SWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGR-IPVEISNLT 667 (693)
Q Consensus 589 ~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~ 667 (693)
+.++..|++|++++|+++ .+|..+.++..|++|...+|++. ..| .+.+++.|+.++++.|+++.. +|.... -+
T Consensus 403 --~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p 476 (1081)
T KOG0618|consen 403 --LRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SP 476 (1081)
T ss_pred --HhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-Cc
Confidence 578899999999999998 67789999999999999999998 677 788999999999999999864 333322 28
Q ss_pred CCCeEEccCCcccCCccCccccc
Q 037679 668 QLQSLQLSSNQLEGSVPSSIFEL 690 (693)
Q Consensus 668 ~L~~L~l~~n~~~~~~p~~~~~~ 690 (693)
+||+||+++|.-...-.+.+..+
T Consensus 477 ~LkyLdlSGN~~l~~d~~~l~~l 499 (1081)
T KOG0618|consen 477 NLKYLDLSGNTRLVFDHKTLKVL 499 (1081)
T ss_pred ccceeeccCCcccccchhhhHHh
Confidence 99999999998432333433333
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=2.1e-32 Score=264.20 Aligned_cols=245 Identities=24% Similarity=0.318 Sum_probs=215.8
Q ss_pred CCCCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCC
Q 037679 2 NLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLT 81 (693)
Q Consensus 2 ~~~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~ 81 (693)
++..+.+|++.+|.+. ..|.++..+..+..+++++|+++ .+|+.+..+..|+.+++++|.+....+ . ++.+-.|+
T Consensus 66 nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~-~--i~~~~~l~ 140 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPD-S--IGRLLDLE 140 (565)
T ss_pred cccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCc-h--HHHHhhhh
Confidence 5677899999999998 78889999999999999999999 889999999999999999999885554 4 68889999
Q ss_pred EEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCC
Q 037679 82 ALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKL 161 (693)
Q Consensus 82 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 161 (693)
.++..+|.+..... .++ .+.+|..+++.+|.++.+|...-+|+.|++|+...|.++.++....++.+|.-|++..|.+
T Consensus 141 dl~~~~N~i~slp~-~~~-~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 141 DLDATNNQISSLPE-DMV-NLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhccccccccCch-HHH-HHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc
Confidence 99999999986554 455 8899999999999999998888789999999999999999998999999999999999999
Q ss_pred CCCCCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecc
Q 037679 162 QGPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKF 241 (693)
Q Consensus 162 ~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~ 241 (693)
...-.+..+..|.++.++.|.|+.+.++...++. ++..|++++|.+... |...+-+++|++||+++|.++.
T Consensus 219 ~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~-~l~vLDLRdNklke~-Pde~clLrsL~rLDlSNN~is~------- 289 (565)
T KOG0472|consen 219 RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLN-SLLVLDLRDNKLKEV-PDEICLLRSLERLDLSNNDISS------- 289 (565)
T ss_pred ccCCCCCccHHHHHHHhcccHHHhhHHHHhcccc-cceeeeccccccccC-chHHHHhhhhhhhcccCCcccc-------
Confidence 9666677999999999999999976667677899 999999999999755 6678889999999999999873
Q ss_pred cccCCCCCCCccCCCCCCceEEecCCCccc
Q 037679 242 NNFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271 (693)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (693)
.| ....++ .|+.|.+.||++.
T Consensus 290 ------Lp--~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 290 ------LP--YSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred ------CC--cccccc-eeeehhhcCCchH
Confidence 23 333677 8999999999877
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=6.3e-28 Score=244.94 Aligned_cols=364 Identities=27% Similarity=0.377 Sum_probs=234.3
Q ss_pred CCCcEEeCCCCCCCC-CCCCC--CCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEE
Q 037679 149 SKMNTLDLGFNKLQG-PLPVP--SLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMI 225 (693)
Q Consensus 149 ~~L~~L~l~~n~~~~-~~~~~--~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L 225 (693)
+-.+.+++++|.+.+ ..|.. .+..++.|.|...++. ..|+.++.+. +|++|.+++|++..+. +.+..++.|+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lq-kLEHLs~~HN~L~~vh-GELs~Lp~LRsv 83 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQ-KLEHLSMAHNQLISVH-GELSDLPRLRSV 83 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHh-hhhhhhhhhhhhHhhh-hhhccchhhHHH
Confidence 334556666666663 33333 6778888888888887 5788899999 8999999999987665 457888999999
Q ss_pred EccCCcCCCceeeecccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhcccccccc
Q 037679 226 DFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDV 305 (693)
Q Consensus 226 ~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 305 (693)
.+.+|++.. + .+|..+ ..+..|+.||+++|+++ +.|...
T Consensus 84 ~~R~N~LKn----------s-GiP~di--F~l~dLt~lDLShNqL~-EvP~~L--------------------------- 122 (1255)
T KOG0444|consen 84 IVRDNNLKN----------S-GIPTDI--FRLKDLTILDLSHNQLR-EVPTNL--------------------------- 122 (1255)
T ss_pred hhhcccccc----------C-CCCchh--cccccceeeecchhhhh-hcchhh---------------------------
Confidence 999988752 2 334333 56888999999999887 455320
Q ss_pred ccceeccccccceeecCCCchhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccc
Q 037679 306 LGFTYYGYADYSLTMSNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFT 385 (693)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 385 (693)
..-.++-+|++++|++..+-...+.++.-|-+|++++|.+.
T Consensus 123 -------------------------E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-------------- 163 (1255)
T KOG0444|consen 123 -------------------------EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-------------- 163 (1255)
T ss_pred -------------------------hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh--------------
Confidence 11233456667777666433334556677777777777654
Q ss_pred cCcccCCCCCcCCCccccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCc
Q 037679 386 NDWFAGNPGLCGEPLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYL 465 (693)
Q Consensus 386 ~~~~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 465 (693)
.+|+....+..|++|++++||..-.+.
T Consensus 164 -----------------------------------------------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 164 -----------------------------------------------------MLPPQIRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred -----------------------------------------------------hcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence 345555566677777777776555555
Q ss_pred ccccccccCCeeEecccccCC-CchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCc
Q 037679 466 PQFQKSSLLEDLRLSYTRFSG-KIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLA 544 (693)
Q Consensus 466 ~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~ 544 (693)
..+..+++|+.|.+++..-+. ..|.++..+.+|..++++.|++. ..|+++.++++|+.|++++|++
T Consensus 191 rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~i------------ 257 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKI------------ 257 (1255)
T ss_pred hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCce------------
Confidence 555555555666665544321 23444455555555555555433 4444455555555555555544
Q ss_pred cccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCC-cccccccCCCCCCE
Q 037679 545 SLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNN-EIPFGISNLTQLTA 623 (693)
Q Consensus 545 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~ 623 (693)
+... ....-..+|++|++|+|+++.++.. +..+++|++|+..+|++.- -+|.+++.+.+|++
T Consensus 258 ------------teL~-~~~~~W~~lEtLNlSrNQLt~LP~a----vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 258 ------------TELN-MTEGEWENLETLNLSRNQLTVLPDA----VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred ------------eeee-ccHHHHhhhhhhccccchhccchHH----HhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence 3321 1122334566666666666554432 3456666666666666542 46777888888888
Q ss_pred EEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCccc
Q 037679 624 LDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLE 680 (693)
Q Consensus 624 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 680 (693)
+..++|.+. ..|+.+..|..|+.|.+++|.+. .+|+++.-++-|+.||+..||-.
T Consensus 321 f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 321 FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 888888776 77888888888888888888887 68888888888888888888755
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=1.4e-27 Score=242.43 Aligned_cols=248 Identities=25% Similarity=0.359 Sum_probs=192.1
Q ss_pred CCCccEEEccccccc-CccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCC
Q 037679 3 LNKLSTLYLQHNQLT-GHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLT 81 (693)
Q Consensus 3 ~~~l~~L~ls~~~l~-~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~ 81 (693)
++=+|-.|+++|+++ +..|.+....+++++|-+....+. ..|+.++.+.+|++|.+++|+++..- . .+..+|.||
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh-G--ELs~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH-G--ELSDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh-h--hhccchhhH
Confidence 455678899999999 569999999999999999999888 78999999999999999999987332 2 378899999
Q ss_pred EEECCCCcCCch-hhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCcc-CCCCCcEEeCCCC
Q 037679 82 ALVLSSNKLSLL-TRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVL-PWSKMNTLDLGFN 159 (693)
Q Consensus 82 ~L~L~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~n 159 (693)
.+.+++|.+... +|..+. ++..|+.|+|+.|+++..|..+...+++-+|+||+|.|.+++...+ +++-|-.|++++|
T Consensus 82 sv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 999999987543 344555 9999999999999999999999999999999999999999887776 8888888888888
Q ss_pred CCCCCCCC-CCCCCCCEEeCCCCCCCCCcccccccccccccEEEccccccc-ccccccccCCCCccEEEccCCcCCCcee
Q 037679 160 KLQGPLPV-PSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFY-RIVPQTFMNGTNLMMIDFSNNSLQGRAL 237 (693)
Q Consensus 160 ~~~~~~~~-~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 237 (693)
++...-|. .-+.+|+.|+|++|.+.......+-.++ +|..|.+++.+-+ .-.|..+..+.+|..+|+++|.+.
T Consensus 161 rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt-sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp---- 235 (1255)
T KOG0444|consen 161 RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT-SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP---- 235 (1255)
T ss_pred hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch-hhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC----
Confidence 87733222 2667788888888876644444444455 6666666655432 234556667777777777777764
Q ss_pred eecccccCCCCCCCccCCCCCCceEEecCCCccc
Q 037679 238 ILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271 (693)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (693)
.+|.-+ .++++|+.|++++|+++
T Consensus 236 ---------~vPecl--y~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 236 ---------IVPECL--YKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred ---------cchHHH--hhhhhhheeccCcCcee
Confidence 233333 56777777788877776
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=2.2e-23 Score=201.93 Aligned_cols=259 Identities=19% Similarity=0.267 Sum_probs=205.0
Q ss_pred ccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCC-CcCCCcccHHHHhhcCCCCCEEE
Q 037679 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSN-NNLSGTVDLNMLLLNLKSLTALV 84 (693)
Q Consensus 6 l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~~~~~~~~~~~l~~l~~L~~L~ 84 (693)
...|++..|+|+.+.+++|..+++||+||||+|.|+.+.|++|.++++|-.|-+.+ |+|+...... |.++..|+.|.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~--F~gL~slqrLl 146 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA--FGGLSSLQRLL 146 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH--hhhHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999887766655 8998776666 99999999999
Q ss_pred CCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCCCCCCCC-------------CCCccCCCC
Q 037679 85 LSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSSNKIAGQ-------------DLLVLPWSK 150 (693)
Q Consensus 85 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~~~~~-------------~~~~~~~~~ 150 (693)
+..|.+.......|. .+++|+.|.+.+|.+..++. .+..+..++++.+..|.+..+ .+...+.+-
T Consensus 147 lNan~i~Cir~~al~-dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALR-DLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhcchhHHHHH-HhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 999999999988888 99999999999999998887 899999999999998874332 000011111
Q ss_pred CcEEeCCC-------------------------CCCCCCCC---CCCCCCCCEEeCCCCCCCCCcccccccccccccEEE
Q 037679 151 MNTLDLGF-------------------------NKLQGPLP---VPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALK 202 (693)
Q Consensus 151 L~~L~l~~-------------------------n~~~~~~~---~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~ 202 (693)
..-..+.+ ++.....+ +..+++|++|++++|+|+++...+|.+.. ++++|.
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a-~l~eL~ 304 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA-ELQELY 304 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh-hhhhhh
Confidence 11111111 11111111 22789999999999999998899999999 899999
Q ss_pred cccccccccccccccCCCCccEEEccCCcCCCceeeecccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccc
Q 037679 203 LQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCW 282 (693)
Q Consensus 203 L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 282 (693)
|..|.+..+...+|..+.+|+.|+|.+|+|+ ...|.+|.....|..|.+-.|.+.-.-.-.+++.|
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it--------------~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W 370 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT--------------TVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW 370 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeE--------------EEecccccccceeeeeehccCcccCccchHHHHHH
Confidence 9999998888889999999999999999985 45566777888888999888887643333344444
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=6.4e-19 Score=209.76 Aligned_cols=155 Identities=18% Similarity=0.227 Sum_probs=81.4
Q ss_pred hhcCCCCCEEECCCCcC------CchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccC
Q 037679 74 LLNLKSLTALVLSSNKL------SLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLP 147 (693)
Q Consensus 74 l~~l~~L~~L~L~~~~~------~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 147 (693)
|.++++|+.|.+..+.. ....+..+..-.++|+.|++.++.++.+|..+ ...+|++|+++++.+..+......
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence 66666666666654421 11122233311235666666666666666655 456666666666666654444445
Q ss_pred CCCCcEEeCCCCCCCCCC-CCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEE
Q 037679 148 WSKMNTLDLGFNKLQGPL-PVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMID 226 (693)
Q Consensus 148 ~~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~ 226 (693)
+++|+.|+++++.....+ ..+.+++|+.|++++|......|..+..+. +|+.|++++|......|..+ .+++|+.|+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~-~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLN-KLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccC-CCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 566666666554322222 223555666666666554444555555555 56666666554333333322 455555555
Q ss_pred ccCCc
Q 037679 227 FSNNS 231 (693)
Q Consensus 227 l~~n~ 231 (693)
+++|.
T Consensus 711 Lsgc~ 715 (1153)
T PLN03210 711 LSGCS 715 (1153)
T ss_pred CCCCC
Confidence 55543
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=5.9e-19 Score=210.01 Aligned_cols=197 Identities=26% Similarity=0.322 Sum_probs=107.1
Q ss_pred CCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCccccc-------ccccccc
Q 037679 446 QLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGK-------IPSSLFN 518 (693)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------~~~~~~~ 518 (693)
++++|+.|++++|..+... +. ...+|++|+++++.+.. .+..+ .+++|++|.+.++..... .+..+..
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~-p~--~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSF-PD--ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCCCCCEEeCCCCCCcccc-cc--ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhc
Confidence 4677777777777543322 11 23456777777776653 33332 456666666665431110 1111222
Q ss_pred cCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCc
Q 037679 519 LTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLT 598 (693)
Q Consensus 519 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~ 598 (693)
+++|+.|++++|......|..++.+++|+.|++++|......+..+ .+++|+.|++++|......+. ...+|+
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~------~~~nL~ 849 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD------ISTNIS 849 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc------cccccC
Confidence 4566666666666555566666666666666666664333333322 456666666666543221111 124566
Q ss_pred EEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccC
Q 037679 599 SLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQL 655 (693)
Q Consensus 599 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 655 (693)
+|++++|.++ .+|.++..+++|+.|++++|.....+|..+..+++|+.+++++|..
T Consensus 850 ~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 850 DLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred EeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 6666666665 4455566666666666666533334555555566666666666643
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=1e-20 Score=183.55 Aligned_cols=88 Identities=19% Similarity=0.230 Sum_probs=57.4
Q ss_pred CCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccC-CcCCCceeeecccccCCC
Q 037679 169 SLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSN-NSLQGRALILKFNNFHGE 247 (693)
Q Consensus 169 ~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~l~~~~~~~~ 247 (693)
-.+...+++|..|+|+.+.+.+|..++ +||.|+|++|.|..+.|.+|..++++.+|-+.+ |+|++
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~-~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~------------- 130 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLH-RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD------------- 130 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchh-hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-------------
Confidence 345667777777777777777777777 777777777777777777777777766655444 55541
Q ss_pred CCCCccCCCCCCceEEecCCCccc
Q 037679 248 IEEPQTGFEFPKLRIIDLSHNRFT 271 (693)
Q Consensus 248 ~~~~~~~~~~~~L~~L~l~~~~~~ 271 (693)
...-+|.++..++.|.+..|++.
T Consensus 131 -l~k~~F~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 131 -LPKGAFGGLSSLQRLLLNANHIN 153 (498)
T ss_pred -hhhhHhhhHHHHHHHhcChhhhc
Confidence 11223345555566666555554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=8.7e-17 Score=177.71 Aligned_cols=258 Identities=24% Similarity=0.295 Sum_probs=197.2
Q ss_pred CccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEE
Q 037679 5 KLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALV 84 (693)
Q Consensus 5 ~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~ 84 (693)
+-..|+++.+.++ .+|..+. ++|+.|++.+|.++. +|. ..++|++|++++|+++.. |. ..++|++|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~-----lp~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PV-----LPPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cC-----cccccceee
Confidence 3568999999998 5677775 589999999999984 443 358899999999998854 32 136899999
Q ss_pred CCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCC
Q 037679 85 LSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGP 164 (693)
Q Consensus 85 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 164 (693)
+++|.+..... -.++|+.|++++|+++.+|.. .++|++|++++|.++.++.. ...|+.|++++|.+++
T Consensus 269 Ls~N~L~~Lp~-----lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 269 IFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred ccCCchhhhhh-----chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccCcccc-
Confidence 99998875432 346788999999999988763 47899999999999975432 2468889999999874
Q ss_pred CCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeeccccc
Q 037679 165 LPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNF 244 (693)
Q Consensus 165 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~ 244 (693)
++. ...+|+.|++++|.++++ |.. .. +|+.|++++|.+..++. . ..+|+.|++++|+++.
T Consensus 337 LP~-lp~~Lq~LdLS~N~Ls~L-P~l---p~-~L~~L~Ls~N~L~~LP~-l---~~~L~~LdLs~N~Lt~---------- 396 (788)
T PRK15387 337 LPT-LPSGLQELSVSDNQLASL-PTL---PS-ELYKLWAYNNRLTSLPA-L---PSGLKELIVSGNRLTS---------- 396 (788)
T ss_pred ccc-cccccceEecCCCccCCC-CCC---Cc-ccceehhhccccccCcc-c---ccccceEEecCCcccC----------
Confidence 221 235899999999999853 432 24 78889999999987543 2 3579999999998752
Q ss_pred CCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceeecCCC
Q 037679 245 HGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKG 324 (693)
Q Consensus 245 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (693)
++. ..++|+.|++++|++. .+|..
T Consensus 397 ---LP~-----l~s~L~~LdLS~N~Ls-sIP~l----------------------------------------------- 420 (788)
T PRK15387 397 ---LPV-----LPSELKELMVSGNRLT-SLPML----------------------------------------------- 420 (788)
T ss_pred ---CCC-----cccCCCEEEccCCcCC-CCCcc-----------------------------------------------
Confidence 221 1357899999999987 45531
Q ss_pred chhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccC
Q 037679 325 TEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRG 372 (693)
Q Consensus 325 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 372 (693)
+..+..|++++|.+. .+|..+..+++|+.|++++|++++
T Consensus 421 --------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 421 --------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred --------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 134577888899887 678889999999999999999885
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=1.2e-15 Score=168.86 Aligned_cols=114 Identities=20% Similarity=0.269 Sum_probs=55.9
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEE
Q 037679 29 QLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVI 108 (693)
Q Consensus 29 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 108 (693)
+-.+|+++.+.++ .+|..+. .+|+.|++++|+++.. |. ..++|++|++++|.++.... ..++|+.|
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~L-P~-----lp~~Lk~LdLs~N~LtsLP~-----lp~sL~~L 267 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA-----LPPELRTLEVSGNQLTSLPV-----LPPGLLEL 267 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCC-CC-----CCCCCcEEEecCCccCcccC-----ccccccee
Confidence 3455666666655 3344333 2566666666655532 21 13556666666665553321 23455555
Q ss_pred eccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCC
Q 037679 109 GFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQ 162 (693)
Q Consensus 109 ~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 162 (693)
++++|.++.+|..+ +.|+.|++++|.++.++. ..++|+.|++++|.+.
T Consensus 268 ~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 268 SIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLA 315 (788)
T ss_pred eccCCchhhhhhch---hhcCEEECcCCccccccc---cccccceeECCCCccc
Confidence 66555555554422 345555555555554322 1234444444444444
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=4.2e-17 Score=168.82 Aligned_cols=236 Identities=22% Similarity=0.255 Sum_probs=138.9
Q ss_pred ccCCCCcceeecccCCCcC--C----CcccccccccCCeeEecccccCCCchhhhhcCCC---CcEEeccCCccccc---
Q 037679 444 IFQLPNLQFLGVMKNPNLT--G----YLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLES---LSYLGISDCSFIGK--- 511 (693)
Q Consensus 444 ~~~~~~L~~L~l~~~~~~~--~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~~--- 511 (693)
+...++++++++.++.... . ....+..+++|++|++++|.+.+..+..+..+.. |++|++++|.+...
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~ 126 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR 126 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH
Confidence 3345556666666553221 0 0112445566667777666665444444444444 77777777765521
Q ss_pred -cccccccc-CCCcEEEeeCCcCCCC----ccccccCCccccEEEecCcccccc----chhccCCCCCCcEEecccCCCC
Q 037679 512 -IPSSLFNL-TKLEHLYLSGNRFLDE----LPTSIGNLASLKALEISSFNFSST----LQASLGNLTQLDSLTISNSNFS 581 (693)
Q Consensus 512 -~~~~~~~l-~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~ls~n~l~ 581 (693)
....+..+ ++|++|++++|.+.+. ....+..++.|++|++++|.+.+. ....+..+++|++|++++|.+.
T Consensus 127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 22233445 6777777777776532 223345566777777777776643 2223445567788888877766
Q ss_pred ccccch-hHhhhcCCCCcEEEccCCCCCCccccccc-----CCCCCCEEEccCCccCCC----ccccccCcCcccEEecc
Q 037679 582 RLMSSS-LSWLTNLNQLTSLNFPYCNLNNEIPFGIS-----NLTQLTALDLSYNQLTGP----IPYSLMKLKKVSSLLLG 651 (693)
Q Consensus 582 ~~~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~ 651 (693)
+..... ...+..+++|++|++++|.+.+.....+. ..+.|++|++++|.+++. +...++.+++|+.++++
T Consensus 207 ~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 207 DEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred hHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC
Confidence 443322 23355677788888888877643222221 246888888888877632 23445556788888888
Q ss_pred CccCCCC----cchhhcCC-CCCCeEEccCCcc
Q 037679 652 FNQLSGR----IPVEISNL-TQLQSLQLSSNQL 679 (693)
Q Consensus 652 ~n~~~~~----~~~~l~~l-~~L~~L~l~~n~~ 679 (693)
+|++.+. ....+... +.|+++|+.+|++
T Consensus 287 ~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 287 GNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 8888754 33333444 6788888888775
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=3.2e-15 Score=166.61 Aligned_cols=142 Identities=27% Similarity=0.382 Sum_probs=69.3
Q ss_pred CCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCC
Q 037679 104 NFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNL 183 (693)
Q Consensus 104 ~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i 183 (693)
+|+.|++++|++..+|..+. .+|++|++++|.++.++... .++|+.|++++|.++. ++....+.|+.|++++|.+
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~L 316 (754)
T PRK15370 242 TIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSL 316 (754)
T ss_pred cccEEECcCCccCcCChhHh--CCCCEEECcCCccCcccccc--CCCCcEEECCCCcccc-CcccchhhHHHHHhcCCcc
Confidence 34444444444444444332 24455555555444332211 1345555555554442 1221223556666666666
Q ss_pred CCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecccccCCCCCCCccCCCCCCceEE
Q 037679 184 SGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRII 263 (693)
Q Consensus 184 ~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L 263 (693)
+.+ |..+ .. +|+.|++++|.++.++ ..+. ++|+.|++++|+++ .++..+ .+.|+.|
T Consensus 317 t~L-P~~l--~~-sL~~L~Ls~N~Lt~LP-~~l~--~sL~~L~Ls~N~L~-------------~LP~~l----p~~L~~L 372 (754)
T PRK15370 317 TAL-PETL--PP-GLKTLEAGENALTSLP-ASLP--PELQVLDVSKNQIT-------------VLPETL----PPTITTL 372 (754)
T ss_pred ccC-Cccc--cc-cceeccccCCccccCC-hhhc--CcccEEECCCCCCC-------------cCChhh----cCCcCEE
Confidence 532 3222 13 5666666666665543 2232 56777777777654 122211 2457777
Q ss_pred ecCCCcccCCCC
Q 037679 264 DLSHNRFTGNLP 275 (693)
Q Consensus 264 ~l~~~~~~~~~~ 275 (693)
++++|+++ .+|
T Consensus 373 dLs~N~Lt-~LP 383 (754)
T PRK15370 373 DVSRNALT-NLP 383 (754)
T ss_pred ECCCCcCC-CCC
Confidence 77777766 444
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=1.3e-14 Score=161.84 Aligned_cols=203 Identities=27% Similarity=0.367 Sum_probs=138.3
Q ss_pred CCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEE
Q 037679 4 NKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTAL 83 (693)
Q Consensus 4 ~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L 83 (693)
.+...|+++++.++ .+|..+. ++|+.|++++|.++. +|..+. .+|+.|++++|.+.. +|.. +. ++|+.|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~--l~--~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPAT--LP--DTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChh--hh--ccccEE
Confidence 34677888888877 4565553 578888888888884 444443 478888888888764 3433 22 478888
Q ss_pred ECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCC
Q 037679 84 VLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQG 163 (693)
Q Consensus 84 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 163 (693)
++++|.+... |..+. ++|+.|++++|+++.+|..+. ++|++|++++|.++.++... ..+|+.|++++|.+..
T Consensus 247 ~Ls~N~L~~L-P~~l~---s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 247 ELSINRITEL-PERLP---SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTA 318 (754)
T ss_pred ECcCCccCcC-ChhHh---CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccc--hhhHHHHHhcCCcccc
Confidence 8888887744 33332 478888888888887776553 57888888888887654322 2467788888887773
Q ss_pred CCCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCC
Q 037679 164 PLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQ 233 (693)
Q Consensus 164 ~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~ 233 (693)
++....++|+.|++++|.++. .|..+. + +|+.|++++|.+..++ ..+. ++|++|++++|+++
T Consensus 319 -LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~-sL~~L~Ls~N~L~~LP-~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 319 -LPETLPPGLKTLEAGENALTS-LPASLP--P-ELQVLDVSKNQITVLP-ETLP--PTITTLDVSRNALT 380 (754)
T ss_pred -CCccccccceeccccCCcccc-CChhhc--C-cccEEECCCCCCCcCC-hhhc--CCcCEEECCCCcCC
Confidence 343344678888888888775 344332 4 7888888888776543 3332 57888888888775
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.57 E-value=1.2e-15 Score=157.97 Aligned_cols=242 Identities=20% Similarity=0.200 Sum_probs=177.5
Q ss_pred CccccCCCCcceeecccCCCcCCC----cccccccccCCeeEecccccCC------CchhhhhcCCCCcEEeccCCcccc
Q 037679 441 PQEIFQLPNLQFLGVMKNPNLTGY----LPQFQKSSLLEDLRLSYTRFSG------KIPDSIENLESLSYLGISDCSFIG 510 (693)
Q Consensus 441 ~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~ 510 (693)
...+..++.|+.+++.+|...... ...+...+.+++++++++.+.. ..+..+..+++|++|++++|.+..
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 344456778999999999532211 2235567779999999988762 123456778899999999998875
Q ss_pred cccccccccCC---CcEEEeeCCcCCCCc----cccccCC-ccccEEEecCcccccc----chhccCCCCCCcEEecccC
Q 037679 511 KIPSSLFNLTK---LEHLYLSGNRFLDEL----PTSIGNL-ASLKALEISSFNFSST----LQASLGNLTQLDSLTISNS 578 (693)
Q Consensus 511 ~~~~~~~~l~~---L~~L~l~~~~l~~~~----~~~~~~l-~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~ls~n 578 (693)
..+..+..+.. |++|++++|.+.+.. ...+..+ ++|++|++++|.+++. ....+..+.+|++|++++|
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 55555555555 999999999986422 2234556 8999999999998843 3345677789999999999
Q ss_pred CCCccccc-hhHhhhcCCCCcEEEccCCCCCCc----ccccccCCCCCCEEEccCCccCCCcccccc-----CcCcccEE
Q 037679 579 NFSRLMSS-SLSWLTNLNQLTSLNFPYCNLNNE----IPFGISNLTQLTALDLSYNQLTGPIPYSLM-----KLKKVSSL 648 (693)
Q Consensus 579 ~l~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L 648 (693)
.+.+.... ....+..+++|++|++++|.+.+. +...+..+++|++|++++|.+++.....+. ..+.|++|
T Consensus 176 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L 255 (319)
T cd00116 176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255 (319)
T ss_pred CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence 98753222 223356678999999999998744 334567789999999999998854333332 24799999
Q ss_pred eccCccCCC----CcchhhcCCCCCCeEEccCCcccCC
Q 037679 649 LLGFNQLSG----RIPVEISNLTQLQSLQLSSNQLEGS 682 (693)
Q Consensus 649 ~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~ 682 (693)
++++|.+.+ .+...+..+++|+++|+++|.+...
T Consensus 256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred EccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 999999973 2445667789999999999999843
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=3.2e-15 Score=129.04 Aligned_cols=151 Identities=23% Similarity=0.341 Sum_probs=80.3
Q ss_pred CCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEE
Q 037679 4 NKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTAL 83 (693)
Q Consensus 4 ~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L 83 (693)
.+++.|.+|+|.++ +.|..++.+.+|++|++++|.|. ..|-.++.+++|++|+++-|++. ..|.. |+.+|-|+.|
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprg--fgs~p~levl 107 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRG--FGSFPALEVL 107 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccc--cCCCchhhhh
Confidence 34555556666655 44445666666666666666655 44555666666666666655554 33444 5556666666
Q ss_pred ECCCCcCCch-hhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCC
Q 037679 84 VLSSNKLSLL-TRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNK 160 (693)
Q Consensus 84 ~L~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~ 160 (693)
|+.+|.+... .|-.|+ .++.|+.|.+++|.+.-+|..++++++|+.|.+.+|.+-+.+-....++.|++|.+.+|+
T Consensus 108 dltynnl~e~~lpgnff-~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hccccccccccCCcchh-HHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 6665544322 222333 455555556666655555555566666665555555555433333333344444333333
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=6.2e-15 Score=127.28 Aligned_cols=153 Identities=28% Similarity=0.457 Sum_probs=92.6
Q ss_pred ccCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEe
Q 037679 472 SLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEI 551 (693)
Q Consensus 472 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 551 (693)
...+.|.+++|.++ ..+..+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++.|++ ...|..|+.+|.|+.||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccCCCchhhhhhc
Confidence 33455666666666 45555666666666666666655 5556666677777777777765 556666777777777777
Q ss_pred cCcccccc-chhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCc
Q 037679 552 SSFNFSST-LQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQ 630 (693)
Q Consensus 552 ~~~~~~~~-~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~ 630 (693)
.+|++... .++.|..+..|+.|.++.|++.-+++. +.++++|+.|.+.+|.+. .+|..++.++.|++|.+.+|+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d----vg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD----VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChh----hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 76666543 555666666666666666665533332 345555555555555554 445555555555555555555
Q ss_pred cC
Q 037679 631 LT 632 (693)
Q Consensus 631 l~ 632 (693)
++
T Consensus 185 l~ 186 (264)
T KOG0617|consen 185 LT 186 (264)
T ss_pred ee
Confidence 55
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.2e-12 Score=126.77 Aligned_cols=185 Identities=27% Similarity=0.297 Sum_probs=113.6
Q ss_pred ccCCCCcEEEccCCcCCCCCC-ccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCC
Q 037679 25 RKLTQLQIVRLAENQLEGSVP-SSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLP 103 (693)
Q Consensus 25 ~~~~~L~~L~ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~ 103 (693)
+++++|+++.|.++.+..... +....|++++.||||+|=+....+...+...+|+|+.|+++.|.+..........-++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 357778888888877764432 4567788888888888777655565556677888888888888776555444333667
Q ss_pred CCcEEeccCCCCC--chhhhhhcCCCccEEEcCCCCCCCCCC-CccCCCCCcEEeCCCCCCCCCC---CCCCCCCCCEEe
Q 037679 104 NFTVIGFNSCNLS--EFPYFLHNQDELVSLDLSSNKIAGQDL-LVLPWSKMNTLDLGFNKLQGPL---PVPSLNGLQALD 177 (693)
Q Consensus 104 ~L~~L~l~~~~l~--~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ 177 (693)
.|+.|.+++|+++ ++..-+..+|+|+.|++.+|....+.. ..--+..|++|++++|.+-..- ....++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 7788888888777 444455677778888887775222111 1124556677777776655221 122666666666
Q ss_pred CCCCCCCCCccccc------ccccccccEEEcccccccc
Q 037679 178 LSYNNLSGMLPECL------GNFSVELSALKLQANNFYR 210 (693)
Q Consensus 178 L~~~~i~~~~~~~~------~~~~~~L~~L~L~~~~i~~ 210 (693)
++.++|+.+.-.+. ..++ +|+.|++..|.|.+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~-kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFP-KLEYLNISENNIRD 315 (505)
T ss_pred ccccCcchhcCCCccchhhhcccc-cceeeecccCcccc
Confidence 66666654422222 2233 45555555555533
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=7.9e-11 Score=107.18 Aligned_cols=105 Identities=30% Similarity=0.397 Sum_probs=22.9
Q ss_pred ccEEEcccccccCccchhhc-cCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEE
Q 037679 6 LSTLYLQHNQLTGHIPVEIR-KLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALV 84 (693)
Q Consensus 6 l~~L~ls~~~l~~~~~~~~~-~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~ 84 (693)
+|+|++.+|.|+.+ +.+. .+.+|+.||+++|.|+++ +.+..+++|+.|++++|++....+.. ...+++|++|+
T Consensus 21 ~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l--~~~lp~L~~L~ 94 (175)
T PF14580_consen 21 LRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGL--DKNLPNLQELY 94 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHH--HHH-TT--EEE
T ss_pred cccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccch--HHhCCcCCEEE
Confidence 44555555555432 1232 344555555555555433 23444555555555555554332211 12345555555
Q ss_pred CCCCcCCchhhhhhhcCCCCCcEEeccCCCCC
Q 037679 85 LSSNKLSLLTRATLNTNLPNFTVIGFNSCNLS 116 (693)
Q Consensus 85 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 116 (693)
+++|.|.+......-..+++|+.|++.+|.+.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 55555443322111114444444444444443
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=2e-11 Score=118.11 Aligned_cols=92 Identities=21% Similarity=0.277 Sum_probs=44.0
Q ss_pred CCCCCCEEeCCCCCCCCC----cccccccccccccEEEcccccccccccccc-----cCCCCccEEEccCCcCCCceeee
Q 037679 169 SLNGLQALDLSYNNLSGM----LPECLGNFSVELSALKLQANNFYRIVPQTF-----MNGTNLMMIDFSNNSLQGRALIL 239 (693)
Q Consensus 169 ~l~~L~~L~L~~~~i~~~----~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~~l 239 (693)
.+++|+.|||..|-++.. ...++...+ +|++|++.+|-+.+-...+| ...|+|++|++.+|.++.+
T Consensus 211 ~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d---- 285 (382)
T KOG1909|consen 211 HCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD---- 285 (382)
T ss_pred hCCcceeeecccchhhhHHHHHHHHHhcccc-hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH----
Confidence 445555555555544322 123333444 55555555555433222111 1256666676666666521
Q ss_pred cccccCCCCCCCccCCCCCCceEEecCCCccc
Q 037679 240 KFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271 (693)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (693)
+...........+.|+.|++++|.+.
T Consensus 286 ------a~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 286 ------AALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ------HHHHHHHHHhcchhhHHhcCCccccc
Confidence 11111222234666777777777773
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.2e-11 Score=119.81 Aligned_cols=184 Identities=23% Similarity=0.223 Sum_probs=108.6
Q ss_pred ccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhh-hhhhcCCCCCcEEeccCCCCCchhh--hhhc
Q 037679 48 IFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTR-ATLNTNLPNFTVIGFNSCNLSEFPY--FLHN 124 (693)
Q Consensus 48 ~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~--~l~~ 124 (693)
=+++++|+.+.|.+++....... +....|++++.|||++|-+....+ ..++..+|+|+.|+++.|++..... .-.-
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 35577777777777766533321 235677888888888776654433 3355577778888877777662221 1235
Q ss_pred CCCccEEEcCCCCCCCCCCCc--cCCCCCcEEeCCCCCCCCCCCC--CCCCCCCEEeCCCCCCCCCc-cccccccccccc
Q 037679 125 QDELVSLDLSSNKIAGQDLLV--LPWSKMNTLDLGFNKLQGPLPV--PSLNGLQALDLSYNNLSGML-PECLGNFSVELS 199 (693)
Q Consensus 125 l~~L~~L~L~~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~--~~l~~L~~L~L~~~~i~~~~-~~~~~~~~~~L~ 199 (693)
+++|+.|.++.|.++.-+... ..+++|+.|++.+|+....... .-+..|++|+|++|.+-... -...+.++ .|+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~-~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP-GLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc-chh
Confidence 667777777777776533322 3667777777777743222222 25566777777777655332 13345566 677
Q ss_pred EEEcccccccccccccc------cCCCCccEEEccCCcCC
Q 037679 200 ALKLQANNFYRIVPQTF------MNGTNLMMIDFSNNSLQ 233 (693)
Q Consensus 200 ~L~L~~~~i~~~~~~~~------~~~~~L~~L~l~~n~l~ 233 (693)
.|+++.+.+..+..... ...++|++|++.+|++.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 77777766655433222 33566666666666653
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=1.4e-10 Score=105.58 Aligned_cols=109 Identities=28% Similarity=0.366 Sum_probs=27.5
Q ss_pred hcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCccccc-ccccccccEE
Q 037679 123 HNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNLSGMLPECL-GNFSVELSAL 201 (693)
Q Consensus 123 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~-~~~~~~L~~L 201 (693)
.+...+++|+|++|.|+.+......+.+|+.|++++|.++....+..++.|++|++++|.|+.+. +.+ ..++ +|++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp-~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLP-NLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-T-T--EE
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCC-cCCEE
Confidence 34445555556555555532111134455555555555554445555666666666666666432 223 2355 56666
Q ss_pred Eccccccccccc-ccccCCCCccEEEccCCcCC
Q 037679 202 KLQANNFYRIVP-QTFMNGTNLMMIDFSNNSLQ 233 (693)
Q Consensus 202 ~L~~~~i~~~~~-~~~~~~~~L~~L~l~~n~l~ 233 (693)
.+++|+|.++.. ..+..+++|++|++.+|++.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666654322 23445566666666666553
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=8.4e-11 Score=113.81 Aligned_cols=137 Identities=22% Similarity=0.288 Sum_probs=80.8
Q ss_pred cCCCcEEEeeCCcCCCCc----cccccCCccccEEEecCcccccc----chhccCCCCCCcEEecccCCCCccccchh-H
Q 037679 519 LTKLEHLYLSGNRFLDEL----PTSIGNLASLKALEISSFNFSST----LQASLGNLTQLDSLTISNSNFSRLMSSSL-S 589 (693)
Q Consensus 519 l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~ 589 (693)
-+.|+++....|++.... ...|+.++.|+.+.+..|.+... ....+..|++|+.||+..|-++......+ .
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 466777777777764332 23455667777777777766543 22456677777777777776654333211 2
Q ss_pred hhhcCCCCcEEEccCCCCCCcccccc-----cCCCCCCEEEccCCccCCC----ccccccCcCcccEEeccCccC
Q 037679 590 WLTNLNQLTSLNFPYCNLNNEIPFGI-----SNLTQLTALDLSYNQLTGP----IPYSLMKLKKVSSLLLGFNQL 655 (693)
Q Consensus 590 ~l~~l~~L~~L~l~~~~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~ 655 (693)
.++.++.|+++++.+|.+.......+ ...|+|+++.+.+|-++.. +..+...-+.|+.|++++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 25556667777777776665433222 2356777777777766532 122233456667777777766
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=1.3e-09 Score=116.24 Aligned_cols=192 Identities=38% Similarity=0.487 Sum_probs=135.4
Q ss_pred EEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcC-CCCCEEECCCCcCCchhhhhhhcCCCCCcEEec
Q 037679 32 IVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNL-KSLTALVLSSNKLSLLTRATLNTNLPNFTVIGF 110 (693)
Q Consensus 32 ~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l 110 (693)
.++.+.+.+. .....+.++..++.|++.+|.+....+.. ... ++|+.|++++|.+.... .... .++.|+.|++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i~~~~---~~~~~nL~~L~l~~N~i~~l~-~~~~-~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIPPLI---GLLKSNLKELDLSDNKIESLP-SPLR-NLPNLKNLDL 170 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccccCcccc---ccchhhcccccccccchhhhh-hhhh-cccccccccc
Confidence 5677777663 22345556677888888888777555432 444 37888888888776552 1222 7788888888
Q ss_pred cCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCC-CCCCCCCCCCCCCCEEeCCCCCCCCCccc
Q 037679 111 NSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNK-LQGPLPVPSLNGLQALDLSYNNLSGMLPE 189 (693)
Q Consensus 111 ~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~L~~~~i~~~~~~ 189 (693)
++|++.+++...+..+.|+.|++++|.++.++.......+|+++.+++|. +........+.++..+.+.+|.+.. .+.
T Consensus 171 ~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 171 SFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred CCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccc
Confidence 88888888776668888888888888888755554455668888888884 4434445577777777777777663 256
Q ss_pred ccccccccccEEEcccccccccccccccCCCCccEEEccCCcCC
Q 037679 190 CLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQ 233 (693)
Q Consensus 190 ~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~ 233 (693)
.+..+. .++.|++++|.+..+.. +....+++.|+++++.+.
T Consensus 250 ~~~~l~-~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 250 SIGNLS-NLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hhcccc-ccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 677777 78888888888887766 777888888888888765
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=4.6e-10 Score=106.11 Aligned_cols=132 Identities=27% Similarity=0.304 Sum_probs=106.6
Q ss_pred CCCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeC
Q 037679 77 LKSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDL 156 (693)
Q Consensus 77 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l 156 (693)
..-|+++||++|.|+.+.. ++. -.|+++.|+++.|++..+.. +..+++|++|++++|.++...-....+.++++|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDE-SvK-L~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDE-SVK-LAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccchhhhhh-hhh-hccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 4568899999998875553 343 66899999999999887765 88899999999999988875444458888999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEeCCCCCCCCCc-ccccccccccccEEEcccccccccc
Q 037679 157 GFNKLQGPLPVPSLNGLQALDLSYNNLSGML-PECLGNFSVELSALKLQANNFYRIV 212 (693)
Q Consensus 157 ~~n~~~~~~~~~~l~~L~~L~L~~~~i~~~~-~~~~~~~~~~L~~L~L~~~~i~~~~ 212 (693)
++|.+.......++.+|..||+++|+|..+. ...++.++ -|+.+.|.+|.+..++
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCCCccccc
Confidence 9999887777788999999999999988653 35678888 7999999999886543
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.86 E-value=3.2e-09 Score=113.15 Aligned_cols=200 Identities=32% Similarity=0.412 Sum_probs=160.9
Q ss_pred EEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCC-CCcEEECCCCcCCCcccHHHHhhcCCCCCEEECC
Q 037679 8 TLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELR-NLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLS 86 (693)
Q Consensus 8 ~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~ 86 (693)
.++.+.+++. .-...+..++.++.|++.+|.++++ +....... +|+.|+++.|++.... .. +..+++|+.|+++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~l~-~~--~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESLP-SP--LRNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhhhh-hh--hhccccccccccC
Confidence 4677777764 2334456678899999999999844 44556664 9999999999987442 23 7899999999999
Q ss_pred CCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCC-CC
Q 037679 87 SNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQG-PL 165 (693)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~ 165 (693)
+|.+........ ..+.|+.|++++|++..+|...+....|+++.+++|.+.........+.++..+.+..|++.. ..
T Consensus 172 ~N~l~~l~~~~~--~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~ 249 (394)
T COG4886 172 FNDLSDLPKLLS--NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE 249 (394)
T ss_pred Cchhhhhhhhhh--hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccc
Confidence 999987665432 679999999999999999998888888999999999655546666788899999999998876 45
Q ss_pred CCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEccccccccccccccc
Q 037679 166 PVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFM 217 (693)
Q Consensus 166 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~ 217 (693)
....++.++.|++++|.++.... ++... .++.|+++++.+....+....
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~-~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLT-NLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred hhccccccceecccccccccccc--ccccC-ccCEEeccCccccccchhhhc
Confidence 55688889999999999996644 88888 999999999999877765443
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=6e-10 Score=105.34 Aligned_cols=223 Identities=23% Similarity=0.222 Sum_probs=114.9
Q ss_pred CCCCcEEEccCCc-------C-CCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhh
Q 037679 27 LTQLQIVRLAENQ-------L-EGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATL 98 (693)
Q Consensus 27 ~~~L~~L~ls~n~-------i-~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 98 (693)
+.+|.+|-+++.. | ....|-.+.-+++|..+.+|+|.-.+.... ...-|.|+++...+..+++... +
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~---~~~kptl~t~~v~~s~~~~~~~--l 255 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDI---ELLKPTLQTICVHNTTIQDVPS--L 255 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheece---eecCchhheeeeeccccccccc--c
Confidence 5667777776632 1 112333444456677777777764433321 2344788888887765543221 1
Q ss_pred hcCCCCCcEEeccCCCCC--chhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEE
Q 037679 99 NTNLPNFTVIGFNSCNLS--EFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQAL 176 (693)
Q Consensus 99 ~~~l~~L~~L~l~~~~l~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L 176 (693)
. .+..+.-.....-... ..-..+..-+.|+++++++|.|+.++...--.+.++.|++++|.+..+.....+++|++|
T Consensus 256 ~-pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~L 334 (490)
T KOG1259|consen 256 L-PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLL 334 (490)
T ss_pred c-chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEe
Confidence 1 1222221111111111 000111222445666666666666554444556666666666666655555566666666
Q ss_pred eCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecccccCCCCCCCccCCC
Q 037679 177 DLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFE 256 (693)
Q Consensus 177 ~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~ 256 (693)
|||+|.++.. ..+=.++- +++.|.|+.|.|.+. ..+..+-+|..||+++|++.. .-......+
T Consensus 335 DLS~N~Ls~~-~Gwh~KLG-NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~-------------ldeV~~IG~ 397 (490)
T KOG1259|consen 335 DLSGNLLAEC-VGWHLKLG-NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEE-------------LDEVNHIGN 397 (490)
T ss_pred ecccchhHhh-hhhHhhhc-CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhh-------------HHHhccccc
Confidence 6666665532 12222344 566666666666444 234455566666666666641 112223356
Q ss_pred CCCceEEecCCCcccC
Q 037679 257 FPKLRIIDLSHNRFTG 272 (693)
Q Consensus 257 ~~~L~~L~l~~~~~~~ 272 (693)
+|.|+.+.+.+|++.+
T Consensus 398 LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 398 LPCLETLRLTGNPLAG 413 (490)
T ss_pred ccHHHHHhhcCCCccc
Confidence 7777777777777763
No 33
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.79 E-value=1e-09 Score=117.03 Aligned_cols=216 Identities=28% Similarity=0.279 Sum_probs=122.7
Q ss_pred CCCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCE
Q 037679 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTA 82 (693)
Q Consensus 3 ~~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~ 82 (693)
+..++.+++..|.++. +-..+..+++|+.|++.+|.|..+. ..+..+.+|++|++++|.|....+ +..++.|+.
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~----l~~l~~L~~ 144 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG----LSTLTLLKE 144 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc----hhhccchhh
Confidence 3445555566665553 2233566677777777777766332 226667777777777777765554 445566777
Q ss_pred EECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhh-hhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCC
Q 037679 83 LVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYF-LHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKL 161 (693)
Q Consensus 83 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 161 (693)
|++++|.|+...... .++.|+.+++++|++..+... +..+.+++.+.+.+|.+.. ....-.+..+..+++..|.+
T Consensus 145 L~l~~N~i~~~~~~~---~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~-i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 145 LNLSGNLISDISGLE---SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE-IEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred heeccCcchhccCCc---cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc-ccchHHHHHHHHhhcccccc
Confidence 777777665443322 466777777777776655443 4666677777777776665 22222333444446666666
Q ss_pred CCCCCCCCCCC--CCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcC
Q 037679 162 QGPLPVPSLNG--LQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSL 232 (693)
Q Consensus 162 ~~~~~~~~l~~--L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l 232 (693)
+...+...+.. |+++++++|.+... ++.+..+. .+..+++.++++..... +...+.+..+....+++
T Consensus 221 ~~~~~l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~-~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 221 SKLEGLNELVMLHLRELYLSGNRISRS-PEGLENLK-NLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKL 289 (414)
T ss_pred eeccCcccchhHHHHHHhcccCccccc-cccccccc-cccccchhhcccccccc--ccccchHHHhccCcchh
Confidence 64444444443 66677777766532 23444455 66666666666654422 23334444455555443
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=4.5e-09 Score=78.54 Aligned_cols=61 Identities=39% Similarity=0.527 Sum_probs=44.8
Q ss_pred CCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcC
Q 037679 4 NKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNL 64 (693)
Q Consensus 4 ~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~ 64 (693)
|+|++|++++|.++.+.++.|.++++|++|++++|.++.+.+++|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777766667777777777777777777766677777777777777777754
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.76 E-value=2.7e-10 Score=116.80 Aligned_cols=176 Identities=27% Similarity=0.311 Sum_probs=130.5
Q ss_pred cCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCC
Q 037679 26 KLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNF 105 (693)
Q Consensus 26 ~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L 105 (693)
.+..-...|++.|+.. ..|..++-+..|+.+.+++|.+- .++.+ ++++..|+++||+.|.++......+ .| -|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~--i~~L~~lt~l~ls~NqlS~lp~~lC--~l-pL 145 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEA--ICNLEALTFLDLSSNQLSHLPDGLC--DL-PL 145 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchh--hhhhhHHHHhhhccchhhcCChhhh--cC-cc
Confidence 3445556778888777 66777888888888888877765 55555 6778888888888887776555443 23 47
Q ss_pred cEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCCCC
Q 037679 106 TVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNLSG 185 (693)
Q Consensus 106 ~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i~~ 185 (693)
+.|-+++|+++.+|..++....|.+|+.+.|.+.++.....++.+|+.|++.+|++...-..-..-.|..||++.|++.
T Consensus 146 kvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 146 KVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS- 224 (722)
T ss_pred eeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee-
Confidence 7888888888888888888888888888888888877777788888888888887763322223456778888888887
Q ss_pred CcccccccccccccEEEcccccccc
Q 037679 186 MLPECLGNFSVELSALKLQANNFYR 210 (693)
Q Consensus 186 ~~~~~~~~~~~~L~~L~L~~~~i~~ 210 (693)
.+|-+|.+|. +|++|.|.+|.++.
T Consensus 225 ~iPv~fr~m~-~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 225 YLPVDFRKMR-HLQVLQLENNPLQS 248 (722)
T ss_pred ecchhhhhhh-hheeeeeccCCCCC
Confidence 5677788888 88888888887753
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.75 E-value=2.9e-10 Score=116.62 Aligned_cols=190 Identities=28% Similarity=0.398 Sum_probs=123.1
Q ss_pred CeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCc
Q 037679 475 EDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSF 554 (693)
Q Consensus 475 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 554 (693)
...|++.|.+. ..+..++.+..|..+.+..|.+- ..|.+...+..|..+|++.|++ ...|..++.|| |+.|.+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecC
Confidence 35677778877 56777777788888888776544 5667777888888888888887 55565555543 778888887
Q ss_pred cccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCC
Q 037679 555 NFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGP 634 (693)
Q Consensus 555 ~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 634 (693)
++.... ..++..++|..|+.++|.+..+++. +..+.+|+.|.+..|++. .+|..+. .-.|.+||+++|+++ .
T Consensus 154 kl~~lp-~~ig~~~tl~~ld~s~nei~slpsq----l~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 154 KLTSLP-EEIGLLPTLAHLDVSKNEIQSLPSQ----LGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-Y 225 (722)
T ss_pred ccccCC-cccccchhHHHhhhhhhhhhhchHH----hhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-e
Confidence 776543 4466777888888888877655443 445566666666666665 3333344 334566666666665 5
Q ss_pred ccccccCcCcccEEeccCccCCCCcchhh---cCCCCCCeEEccCC
Q 037679 635 IPYSLMKLKKVSSLLLGFNQLSGRIPVEI---SNLTQLQSLQLSSN 677 (693)
Q Consensus 635 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~n 677 (693)
+|-.|..+..|+.|.|.+|++. +-|..+ +...-.++|++..|
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 6666666666666666666665 333321 33444556666555
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.72 E-value=1.3e-08 Score=116.12 Aligned_cols=180 Identities=27% Similarity=0.237 Sum_probs=115.3
Q ss_pred CCCCccEEEccccc--ccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCC
Q 037679 2 NLNKLSTLYLQHNQ--LTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKS 79 (693)
Q Consensus 2 ~~~~l~~L~ls~~~--l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~ 79 (693)
+.++|++|-+.+|. +..+..+.|..++.|++||+++|.--..+|+.++++-+||+|+++++.+. ..|.. +.++.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~--l~~Lk~ 619 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSG--LGNLKK 619 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchH--HHHHHh
Confidence 35678888888886 55555566888999999999988766678999999999999999999887 66666 889999
Q ss_pred CCEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh---hhhcCCCccEEEcCCCCCCCCCCCccCCCCCc----
Q 037679 80 LTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY---FLHNQDELVSLDLSSNKIAGQDLLVLPWSKMN---- 152 (693)
Q Consensus 80 L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~---~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~---- 152 (693)
|.+|++..+......+.... .+++||+|.+.......-.. .+.++.+|+.+....... .+......++.|.
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~-~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILL-ELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred hheeccccccccccccchhh-hcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhH
Confidence 99999998876545544443 79999999987765332222 334444444444432222 0011112333333
Q ss_pred EEeCCCCCCC-CCCCCCCCCCCCEEeCCCCCCCCC
Q 037679 153 TLDLGFNKLQ-GPLPVPSLNGLQALDLSYNNLSGM 186 (693)
Q Consensus 153 ~L~l~~n~~~-~~~~~~~l~~L~~L~L~~~~i~~~ 186 (693)
.+.+.++... .......+++|+.|.+.++.+.+.
T Consensus 698 ~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 698 SLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred hhhhcccccceeecccccccCcceEEEEcCCCchh
Confidence 2221122211 123334777777777777776543
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.70 E-value=4.8e-08 Score=109.07 Aligned_cols=109 Identities=27% Similarity=0.376 Sum_probs=82.9
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEE
Q 037679 29 QLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVI 108 (693)
Q Consensus 29 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 108 (693)
.++.|+|++|.+.+..|..|.++++|+.|+|++|.+.+.+|.. +..+++|+.|+|++|.++...+..+. ++++|+.|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~--~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS--LGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH--HhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEE
Confidence 3677888888887777778888888888888888887777766 77888888888888888777777777 78888888
Q ss_pred eccCCCCC-chhhhhhcC-CCccEEEcCCCCCCC
Q 037679 109 GFNSCNLS-EFPYFLHNQ-DELVSLDLSSNKIAG 140 (693)
Q Consensus 109 ~l~~~~l~-~~~~~l~~l-~~L~~L~L~~~~~~~ 140 (693)
++++|.++ .+|..++.. .++..+++.+|....
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 88888777 677766553 456778888776443
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=4.5e-09 Score=112.13 Aligned_cols=218 Identities=26% Similarity=0.294 Sum_probs=161.3
Q ss_pred CCCCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCC
Q 037679 2 NLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLT 81 (693)
Q Consensus 2 ~~~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~ 81 (693)
.+++++.|++.+|.+.++.. .+..+++|++|++++|.|+++ ..+..+..|+.|++++|++..... +..++.|+
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~~----~~~l~~L~ 165 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDISG----LESLKSLK 165 (414)
T ss_pred cccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhheeccCcchhccC----Cccchhhh
Confidence 47889999999999985533 378899999999999999966 457788889999999999985544 56699999
Q ss_pred EEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCC--CCcEEeCCCC
Q 037679 82 ALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWS--KMNTLDLGFN 159 (693)
Q Consensus 82 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~--~L~~L~l~~n 159 (693)
.+++++|.+..+...... .+.+++.+.+.+|.+..+. .+..+..+..+++..|.++.+ .+..... +|+.+++++|
T Consensus 166 ~l~l~~n~i~~ie~~~~~-~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~-~~l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELS-ELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKL-EGLNELVMLHLRELYLSGN 242 (414)
T ss_pred cccCCcchhhhhhhhhhh-hccchHHHhccCCchhccc-chHHHHHHHHhhcccccceec-cCcccchhHHHHHHhcccC
Confidence 999999999877762122 8899999999999988654 355666666669999998873 3333333 4999999999
Q ss_pred CCCCC-CCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEccccccccc---ccc-cccCCCCccEEEccCCcC
Q 037679 160 KLQGP-LPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRI---VPQ-TFMNGTNLMMIDFSNNSL 232 (693)
Q Consensus 160 ~~~~~-~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~---~~~-~~~~~~~L~~L~l~~n~l 232 (693)
++... .....+..++.+++..+.+... ..+.... .+..+...++.+... ... .....+.++.+.+..+.+
T Consensus 243 ~i~~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 243 RISRSPEGLENLKNLPVLDLSSNRISNL--EGLERLP-KLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred ccccccccccccccccccchhhcccccc--ccccccc-hHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 99976 5667889999999999988754 3344445 666666666665422 111 133445555555555543
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.68 E-value=2.6e-08 Score=113.61 Aligned_cols=244 Identities=20% Similarity=0.189 Sum_probs=159.0
Q ss_pred CccEEEcccccccCccchhhccCCCCcEEEccCCc--CCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCE
Q 037679 5 KLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQ--LEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTA 82 (693)
Q Consensus 5 ~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~ 82 (693)
..|.+.+-+|.+. .++.+.. ++.|+.|-+..|. +..+..+.|..++.|++||+++|.-.+..|.. ++.+-+||+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~--I~~Li~Lry 599 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS--IGELVHLRY 599 (889)
T ss_pred heeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH--Hhhhhhhhc
Confidence 4577777777766 4454444 4589999999995 66566667999999999999998877788877 899999999
Q ss_pred EECCCCcCCchhhhhhhcCCCCCcEEeccCCCCC-chhhhhhcCCCccEEEcCCCCCCCCCCCc---cCCCCCcEEeCCC
Q 037679 83 LVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLS-EFPYFLHNQDELVSLDLSSNKIAGQDLLV---LPWSKMNTLDLGF 158 (693)
Q Consensus 83 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~---~~~~~L~~L~l~~ 158 (693)
|+++++.+. ..|..+. ++++|.+|++..+.-. .+|.....+++|++|.+............ ..+.+|+.+....
T Consensus 600 L~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 999999998 4556777 9999999999987643 55566677999999999987743323333 3555566555533
Q ss_pred CCCCCCCCCCCCCCCC----EEeCCCCCCCCCcccccccccccccEEEcccccccccccccccC------CCCccEEEcc
Q 037679 159 NKLQGPLPVPSLNGLQ----ALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMN------GTNLMMIDFS 228 (693)
Q Consensus 159 n~~~~~~~~~~l~~L~----~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~------~~~L~~L~l~ 228 (693)
....-......+..|. .+.+.++... ..+..+..+. +|+.|.+.++.+.++....+.. .+++..+.+.
T Consensus 678 ~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~-~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~ 755 (889)
T KOG4658|consen 678 SSVLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLG-NLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSIL 755 (889)
T ss_pred chhHhHhhhhhhHHHHHHhHhhhhcccccc-eeeccccccc-CcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhh
Confidence 3321001112223332 2332333222 3445577778 9999999999887654433222 1122222222
Q ss_pred CCcCCCceeeecccccCCCCCCCccCCCCCCceEEecCCCccc
Q 037679 229 NNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271 (693)
Q Consensus 229 ~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (693)
++.. ...+.|. ...++|+.|.+..|...
T Consensus 756 ~~~~-------------~r~l~~~--~f~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 756 NCHM-------------LRDLTWL--LFAPHLTSLSLVSCRLL 783 (889)
T ss_pred cccc-------------ccccchh--hccCcccEEEEeccccc
Confidence 2211 1122222 34678999999988655
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.67 E-value=2.1e-09 Score=106.54 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=67.3
Q ss_pred CCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCc-CCchhhhhhhcCCCCCcEEeccCC-CCC--chhhhhhcCCC
Q 037679 52 RNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNK-LSLLTRATLNTNLPNFTVIGFNSC-NLS--EFPYFLHNQDE 127 (693)
Q Consensus 52 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~l~~L~~L~l~~~-~l~--~~~~~l~~l~~ 127 (693)
..|+.|.+++++-.+..+.-.+..++|++++|++.++. +++.....+...|++|++|++..| .++ .+..-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 36899999999877777655456789999999999874 566666778889999999999995 455 33334568889
Q ss_pred ccEEEcCCCCC
Q 037679 128 LVSLDLSSNKI 138 (693)
Q Consensus 128 L~~L~L~~~~~ 138 (693)
|++|+++++.-
T Consensus 218 L~~lNlSwc~q 228 (483)
T KOG4341|consen 218 LKYLNLSWCPQ 228 (483)
T ss_pred HHHhhhccCch
Confidence 99999998854
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.66 E-value=1.2e-08 Score=76.12 Aligned_cols=61 Identities=41% Similarity=0.497 Sum_probs=51.8
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcC
Q 037679 28 TQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKL 90 (693)
Q Consensus 28 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 90 (693)
++|++|++++|.++.+.+++|.++++|++|++++|++....+.. |.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~--f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDA--FSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTT--TTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHH--HcCCCCCCEEeCcCCcC
Confidence 57889999999988777788999999999999999988776666 88899999999988864
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.63 E-value=5.2e-08 Score=108.85 Aligned_cols=114 Identities=30% Similarity=0.480 Sum_probs=97.2
Q ss_pred CCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEE
Q 037679 569 QLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSL 648 (693)
Q Consensus 569 ~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 648 (693)
.++.|++++|.+....+. .+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|
T Consensus 419 ~v~~L~L~~n~L~g~ip~---~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN---DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCH---HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 478899999988765554 35688999999999999998888888999999999999999998899999999999999
Q ss_pred eccCccCCCCcchhhcCC-CCCCeEEccCCcccCCccC
Q 037679 649 LLGFNQLSGRIPVEISNL-TQLQSLQLSSNQLEGSVPS 685 (693)
Q Consensus 649 ~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p~ 685 (693)
++++|++.+.+|..+... .++..+++.+|+..+..|.
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 999999999999888764 5678899999987766653
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=3.6e-08 Score=93.51 Aligned_cols=203 Identities=23% Similarity=0.212 Sum_probs=128.0
Q ss_pred CCcEEEccCCcCCCCCC-cccc-CCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCc
Q 037679 29 QLQIVRLAENQLEGSVP-SSIF-ELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFT 106 (693)
Q Consensus 29 ~L~~L~ls~n~i~~~~~-~~~~-~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 106 (693)
.+..|.+.++.|..+.. ..|. .+.+++.+||.+|.+++......++.++|+|+.|+|+.|.+...+...-. ...+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~-p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL-PLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-cccceE
Confidence 34455556666654432 2233 36889999999999987776666789999999999999998766544323 778999
Q ss_pred EEeccCCCCC--chhhhhhcCCCccEEEcCCCCCCCCCCCc---cCC-CCCcEEeCCCCCCCCCCCCC----CCCCCCEE
Q 037679 107 VIGFNSCNLS--EFPYFLHNQDELVSLDLSSNKIAGQDLLV---LPW-SKMNTLDLGFNKLQGPLPVP----SLNGLQAL 176 (693)
Q Consensus 107 ~L~l~~~~l~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~---~~~-~~L~~L~l~~n~~~~~~~~~----~l~~L~~L 176 (693)
.|-|.++.+. ....++..++.+++|+++.|......... ..+ +.+++|...+|....+.... -+|++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 9999998776 55567889999999999998554432221 122 34555555555433222111 45666666
Q ss_pred eCCCCCCCCCc-ccccccccccccEEEccccccccccc-ccccCCCCccEEEccCCcCC
Q 037679 177 DLSYNNLSGML-PECLGNFSVELSALKLQANNFYRIVP-QTFMNGTNLMMIDFSNNSLQ 233 (693)
Q Consensus 177 ~L~~~~i~~~~-~~~~~~~~~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~l~~n~l~ 233 (693)
-+..|.+.... -+.+..++ .+-.|+|..+.|..+.. +++..++.|.-|.++++++.
T Consensus 205 ~v~e~PlK~~s~ek~se~~p-~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFP-SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred eeecCcccchhhcccCCCCC-cchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 66666554332 23344444 55566666666654432 34455566666666666553
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=4.6e-08 Score=92.85 Aligned_cols=176 Identities=21% Similarity=0.154 Sum_probs=88.4
Q ss_pred ccEEEcccccccCc-cchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEE
Q 037679 6 LSTLYLQHNQLTGH-IPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALV 84 (693)
Q Consensus 6 l~~L~ls~~~l~~~-~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~ 84 (693)
+++||+|+..++.. +-..++.|.+|+.|++.++.+.+-+...+..-.+|+.|+++.|.=.+.....-.|.+|..|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 45556655555421 23334556666666666666655555555556666666666553222222222355566666666
Q ss_pred CCCCcCCchhhhh-hhcCCCCCcEEeccCCCC----CchhhhhhcCCCccEEEcCCCCCCCCCC--CccCCCCCcEEeCC
Q 037679 85 LSSNKLSLLTRAT-LNTNLPNFTVIGFNSCNL----SEFPYFLHNQDELVSLDLSSNKIAGQDL--LVLPWSKMNTLDLG 157 (693)
Q Consensus 85 L~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l----~~~~~~l~~l~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~l~ 157 (693)
|++|......... +..--++|..|+++|++- ..+..-.+.+++|.+|||++|-.-..+. ..+.++.|++|+++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 6665443222211 111224555666665531 1222234566666666666643222111 11366666666666
Q ss_pred CCCCCC---CCCCCCCCCCCEEeCCCC
Q 037679 158 FNKLQG---PLPVPSLNGLQALDLSYN 181 (693)
Q Consensus 158 ~n~~~~---~~~~~~l~~L~~L~L~~~ 181 (693)
+|+--. .+.+...|.|..|+.-++
T Consensus 347 RCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhcCCChHHeeeeccCcceEEEEeccc
Confidence 665321 223336777777776665
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=3.9e-08 Score=93.33 Aligned_cols=174 Identities=21% Similarity=0.172 Sum_probs=110.6
Q ss_pred CCcEEEccCCcCCCC-CCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCC-cCCchhhhhhhcCCCCCc
Q 037679 29 QLQIVRLAENQLEGS-VPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSN-KLSLLTRATLNTNLPNFT 106 (693)
Q Consensus 29 ~L~~L~ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~L~ 106 (693)
.|++||+|+..|+.. ....++.|.+|+.|.+.++++.+.+... ++.-.+|+.|+|+.+ +++......+...|+.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~--iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT--IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH--HhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 478888888776522 3345667788888888888877666555 777788888888875 455555444444788888
Q ss_pred EEeccCCCCCch--hhhh-hcCCCccEEEcCCCCCCCC--CCC--ccCCCCCcEEeCCCCCCCCCCC---CCCCCCCCEE
Q 037679 107 VIGFNSCNLSEF--PYFL-HNQDELVSLDLSSNKIAGQ--DLL--VLPWSKMNTLDLGFNKLQGPLP---VPSLNGLQAL 176 (693)
Q Consensus 107 ~L~l~~~~l~~~--~~~l-~~l~~L~~L~L~~~~~~~~--~~~--~~~~~~L~~L~l~~n~~~~~~~---~~~l~~L~~L 176 (693)
.|+++=|.+..- -..+ .--+.|+.|+++|+.-.-. ... .-.+++|..|+++.+..-.... +.+++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 888887766521 1111 3446677788887643211 111 1377888888888776443211 1277888888
Q ss_pred eCCCCCCCCCccccc---ccccccccEEEccccc
Q 037679 177 DLSYNNLSGMLPECL---GNFSVELSALKLQANN 207 (693)
Q Consensus 177 ~L~~~~i~~~~~~~~---~~~~~~L~~L~L~~~~ 207 (693)
.++.|.. +.|+.+ ...+ .|.+|++.++-
T Consensus 344 SlsRCY~--i~p~~~~~l~s~p-sl~yLdv~g~v 374 (419)
T KOG2120|consen 344 SLSRCYD--IIPETLLELNSKP-SLVYLDVFGCV 374 (419)
T ss_pred ehhhhcC--CChHHeeeeccCc-ceEEEEecccc
Confidence 8888753 445443 3445 77788877663
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=1.8e-08 Score=106.49 Aligned_cols=178 Identities=28% Similarity=0.343 Sum_probs=124.6
Q ss_pred chhhccCCCCcEEEccCCcCCCCCCccccCCC-CCcEEECCCCcCCCcccHHHHhhc----------CCCCCEEECCCCc
Q 037679 21 PVEIRKLTQLQIVRLAENQLEGSVPSSIFELR-NLQALDLSNNNLSGTVDLNMLLLN----------LKSLTALVLSSNK 89 (693)
Q Consensus 21 ~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~l~~----------l~~L~~L~L~~~~ 89 (693)
|..|..++.||+|.+.++.+.. ..++..+. .|+.|..++ .+... . .+|+. ...|..-+.++|.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al-~--~v~ascggd~~ns~~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDAL-R--HVFASCGGDISNSPVWNKLATASFSYNR 175 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHH-H--HHHHHhccccccchhhhhHhhhhcchhh
Confidence 6667778888888888887764 23444442 466655432 11100 0 01111 2357777777787
Q ss_pred CCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCcc-CCCCCcEEeCCCCCCCCCCCCC
Q 037679 90 LSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVL-PWSKMNTLDLGFNKLQGPLPVP 168 (693)
Q Consensus 90 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~ 168 (693)
+..++ .++. -++.|++|+|+.|+++++. ++..++.|++||++.|.+..++-... ++. |..|.+++|.++..-.+.
T Consensus 176 L~~mD-~SLq-ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie 251 (1096)
T KOG1859|consen 176 LVLMD-ESLQ-LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIE 251 (1096)
T ss_pred HHhHH-HHHH-HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHH
Confidence 76444 3444 6788999999999999876 68999999999999999987654333 444 999999999999887888
Q ss_pred CCCCCCEEeCCCCCCCCCc-ccccccccccccEEEccccccc
Q 037679 169 SLNGLQALDLSYNNLSGML-PECLGNFSVELSALKLQANNFY 209 (693)
Q Consensus 169 ~l~~L~~L~L~~~~i~~~~-~~~~~~~~~~L~~L~L~~~~i~ 209 (693)
++++|+.||+++|-+.+-- ..-+..+. .|+.|+|.+|.+-
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcCCccc
Confidence 9999999999999876432 23344556 8899999999873
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=1.3e-06 Score=83.18 Aligned_cols=246 Identities=19% Similarity=0.144 Sum_probs=141.8
Q ss_pred cccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcc-cc-cccccCCeeEecccccCC--CchhhhhcCCC
Q 037679 422 LAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLP-QF-QKSSLLEDLRLSYTRFSG--KIPDSIENLES 497 (693)
Q Consensus 422 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~ 497 (693)
...++++..-++|+..+. +....++-+.+.+|...+.+.. .| +.++.++++|+.+|.+++ .....++.+|.
T Consensus 24 ~~~df~~t~~~g~s~~~v-----~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~ 98 (418)
T KOG2982|consen 24 KLSDFEETTSAGLSYLGV-----SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPA 98 (418)
T ss_pred hhhheEEecccccceeee-----ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCcc
Confidence 334566666666655543 2333555566666644333222 12 466678888888888874 22334467888
Q ss_pred CcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCc-cccccCCccccEEEecCccccccc--hhccC-CCCCCcEE
Q 037679 498 LSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDEL-PTSIGNLASLKALEISSFNFSSTL--QASLG-NLTQLDSL 573 (693)
Q Consensus 498 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~-~l~~L~~L 573 (693)
|+.|+++.|.+...+-.......+|++|-+.|..+.... ...+..+|.+++|.++.|.+.... ..+.. .-+.++++
T Consensus 99 l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tl 178 (418)
T KOG2982|consen 99 LTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTL 178 (418)
T ss_pred ceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhh
Confidence 888888888766443222235567888888777654322 223456777888888777443221 11111 22355666
Q ss_pred ecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCc-ccccccCCCCCCEEEccCCccCCCc-cccccCcCcccEEecc
Q 037679 574 TISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNE-IPFGISNLTQLTALDLSYNQLTGPI-PYSLMKLKKVSSLLLG 651 (693)
Q Consensus 574 ~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~ 651 (693)
+...|....... ...--..++++..+-+..|++.+. ..+....++++--|+++.+++.++. -..+.+.+.|..|.++
T Consensus 179 h~~~c~~~~w~~-~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~ 257 (418)
T KOG2982|consen 179 HQLPCLEQLWLN-KNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVS 257 (418)
T ss_pred hcCCcHHHHHHH-HHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeecc
Confidence 666654321111 000124467788888888876543 2244456677778888888776442 3456677888888888
Q ss_pred CccCCCCcch------hhcCCCCCCeEE
Q 037679 652 FNQLSGRIPV------EISNLTQLQSLQ 673 (693)
Q Consensus 652 ~n~~~~~~~~------~l~~l~~L~~L~ 673 (693)
++++.+.+.. -++-++++|.|+
T Consensus 258 ~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 258 ENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCcccccccCCcceEEEEeeccceEEec
Confidence 8888753322 134566666665
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.13 E-value=9.6e-07 Score=82.97 Aligned_cols=240 Identities=19% Similarity=0.190 Sum_probs=145.1
Q ss_pred hhccCCCCcEEEccCCcCCCCCC----ccccCCCCCcEEECCCCcCC---CcccH-----HHHhhcCCCCCEEECCCCcC
Q 037679 23 EIRKLTQLQIVRLAENQLEGSVP----SSIFELRNLQALDLSNNNLS---GTVDL-----NMLLLNLKSLTALVLSSNKL 90 (693)
Q Consensus 23 ~~~~~~~L~~L~ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~~~---~~~~~-----~~~l~~l~~L~~L~L~~~~~ 90 (693)
.+.....+..+++|+|.|..... +.+.+-++|+..++|.--.. +.++. ...+.+||+|+..+||.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34557788888888888875533 34455578888888753221 11111 01256788999999998877
Q ss_pred Cchhhhhh---hcCCCCCcEEeccCCCCCchhh--------------hhhcCCCccEEEcCCCCCCCCCCCc----c-CC
Q 037679 91 SLLTRATL---NTNLPNFTVIGFNSCNLSEFPY--------------FLHNQDELVSLDLSSNKIAGQDLLV----L-PW 148 (693)
Q Consensus 91 ~~~~~~~~---~~~l~~L~~L~l~~~~l~~~~~--------------~l~~l~~L~~L~L~~~~~~~~~~~~----~-~~ 148 (693)
....+..+ -..-+.|.+|.+++|++..+.. ...+-|.|+++....|++.+-+... + .-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 65555432 2267888899999887773321 2357788999999999888733222 1 22
Q ss_pred CCCcEEeCCCCCCCCCCC-------CCCCCCCCEEeCCCCCCCCCc----ccccccccccccEEEccccccccccccc--
Q 037679 149 SKMNTLDLGFNKLQGPLP-------VPSLNGLQALDLSYNNLSGML----PECLGNFSVELSALKLQANNFYRIVPQT-- 215 (693)
Q Consensus 149 ~~L~~L~l~~n~~~~~~~-------~~~l~~L~~L~L~~~~i~~~~----~~~~~~~~~~L~~L~L~~~~i~~~~~~~-- 215 (693)
..|+.+.+..|.|..... ..-+.+|+.|++..|.++... ..++..-. .|++|.+.+|-+.......
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDClls~~G~~~v~ 263 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDCLLSNEGVKSVL 263 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccchhhccccHHHHH
Confidence 578888888888773311 115678888888888766332 23333334 5778888777664332221
Q ss_pred --c--cCCCCccEEEccCCcCCCc-eeeecccccCCCCCCCccCCCCCCceEEecCCCccc
Q 037679 216 --F--MNGTNLMMIDFSNNSLQGR-ALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271 (693)
Q Consensus 216 --~--~~~~~L~~L~l~~n~l~~~-~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (693)
| ...|+|+.|...+|..... ...++.+.+. -..+|-|..+.+.+|++.
T Consensus 264 ~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e--------~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 264 RRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE--------QDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HHhhhhcCCCccccccchhhhcCceeeeechhhhh--------hcccHHHHHHHHccCcch
Confidence 1 1257777777777765432 1111111111 134666777777777765
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.11 E-value=8.2e-08 Score=101.60 Aligned_cols=126 Identities=27% Similarity=0.304 Sum_probs=72.6
Q ss_pred ccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 6 l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
|.+.++++|.+. ....++.-++.|+.|||++|++++.. ++..|.+|++|||+.|++....... +.++. |+.|++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~--~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLS--MVGCK-LQLLNL 239 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccc--hhhhh-heeeee
Confidence 444555666655 45555666666666666666666443 5666666666666666666554444 33433 666666
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCchh--hhhhcCCCccEEEcCCCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFP--YFLHNQDELVSLDLSSNKIAG 140 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~l~~l~~L~~L~L~~~~~~~ 140 (693)
++|.++..... . ++++|+.||++.|-+.... ..+..+..|+.|+|.||.+..
T Consensus 240 rnN~l~tL~gi--e-~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 240 RNNALTTLRGI--E-NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cccHHHhhhhH--H-hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 66665543332 2 6666666666666554221 135556666666666665543
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.08 E-value=1.5e-06 Score=96.77 Aligned_cols=136 Identities=21% Similarity=0.227 Sum_probs=86.1
Q ss_pred CCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEE
Q 037679 52 RNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSL 131 (693)
Q Consensus 52 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L 131 (693)
.+|++||+++.......+..++-..+|+|++|.+++-.+.......++.++|+|+.||+++++++.+ ..++.+++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4678888877655444443333445788888888876665555455556788888888888887776 457778888888
Q ss_pred EcCCCCCCCCC--CCccCCCCCcEEeCCCCCCCCCC--------CCCCCCCCCEEeCCCCCCCCCcc
Q 037679 132 DLSSNKIAGQD--LLVLPWSKMNTLDLGFNKLQGPL--------PVPSLNGLQALDLSYNNLSGMLP 188 (693)
Q Consensus 132 ~L~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--------~~~~l~~L~~L~L~~~~i~~~~~ 188 (693)
.+.+=.+.... ...|++++|+.||+|+......- ....+|+|+.||.|++.+.+...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 77776666522 13467777777777765543211 01145666666666665554433
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.92 E-value=1.5e-06 Score=86.83 Aligned_cols=255 Identities=17% Similarity=0.082 Sum_probs=124.7
Q ss_pred CCCCccEEEccccc-ccCccchhh-ccCCCCcEEEccCC-cCCCCCCc-cccCCCCCcEEECCCCcCCCcccHHHHhhcC
Q 037679 2 NLNKLSTLYLQHNQ-LTGHIPVEI-RKLTQLQIVRLAEN-QLEGSVPS-SIFELRNLQALDLSNNNLSGTVDLNMLLLNL 77 (693)
Q Consensus 2 ~~~~l~~L~ls~~~-l~~~~~~~~-~~~~~L~~L~ls~n-~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l 77 (693)
++++++.|.+.++. ++...-..+ ..+++|+.|++..| .+++.... -..+|++|+++++|+|.....-.....+.++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 56777777777765 222222223 34778888888774 34433222 4556788888888887644332222234566
Q ss_pred CCCCEEECCCCcCC-chhhhhhhcCCCCCcEEeccCCC-CCchh--hhhhcCCCccEEEcCCCCCCCCCCCc----cCCC
Q 037679 78 KSLTALVLSSNKLS-LLTRATLNTNLPNFTVIGFNSCN-LSEFP--YFLHNQDELVSLDLSSNKIAGQDLLV----LPWS 149 (693)
Q Consensus 78 ~~L~~L~L~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~-l~~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~----~~~~ 149 (693)
.+++.+.+.++.-. ..........++.+..+++..|. +++.. ..-..+..|+.|..+++...+ +... .+..
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~-d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT-DEVLWALGQHCH 320 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc-hHHHHHHhcCCC
Confidence 66666666654211 11111122244444455544442 22111 111344555555555543322 1111 1445
Q ss_pred CCcEEeCCCCCCCCCCCC---C-CCCCCCEEeCCCCCCCCC--cccccccccccccEEEcccccccccc-----cccccC
Q 037679 150 KMNTLDLGFNKLQGPLPV---P-SLNGLQALDLSYNNLSGM--LPECLGNFSVELSALKLQANNFYRIV-----PQTFMN 218 (693)
Q Consensus 150 ~L~~L~l~~n~~~~~~~~---~-~l~~L~~L~L~~~~i~~~--~~~~~~~~~~~L~~L~L~~~~i~~~~-----~~~~~~ 218 (693)
+|+.+-++++.--....+ . +.+.|+.+++..+..... ....-.+++ .||.+.+++|....-. ...-..
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~-~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP-RLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc-hhccCChhhhhhhhhhhhhhhhhcccc
Confidence 555555555542111111 1 555666666655543211 111112334 5666666665432221 112234
Q ss_pred CCCccEEEccCCcCCCceeeecccccCCCCCCCccCCCCCCceEEecCCCccc
Q 037679 219 GTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271 (693)
Q Consensus 219 ~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (693)
+..|+.+.+++++... -........+++|+.+++.+|+-.
T Consensus 400 ~~~l~~lEL~n~p~i~-------------d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLIT-------------DATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ccccceeeecCCCCch-------------HHHHHHHhhCcccceeeeechhhh
Confidence 6677777777777541 112223356778888888888644
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.85 E-value=1.3e-05 Score=75.66 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=74.5
Q ss_pred ccccCCCcEEEeeCCcCCCCcccc----ccCCccccEEEecCccccccchh-------------ccCCCCCCcEEecccC
Q 037679 516 LFNLTKLEHLYLSGNRFLDELPTS----IGNLASLKALEISSFNFSSTLQA-------------SLGNLTQLDSLTISNS 578 (693)
Q Consensus 516 ~~~l~~L~~L~l~~~~l~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~-------------~l~~l~~L~~L~ls~n 578 (693)
+.+||.|+..++++|-+....|+- +...+.|++|.+++|.+....-+ ....-|.|+......|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 345566666666666554333322 23345566666665544322111 1123355666666666
Q ss_pred CCCccccchhHh-hhcCCCCcEEEccCCCCCCccc-----ccccCCCCCCEEEccCCccCCCccc----cccCcCcccEE
Q 037679 579 NFSRLMSSSLSW-LTNLNQLTSLNFPYCNLNNEIP-----FGISNLTQLTALDLSYNQLTGPIPY----SLMKLKKVSSL 648 (693)
Q Consensus 579 ~l~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L 648 (693)
.+.+-+...... +..-..|+++.+..|.|..... .++..+.+|+.||+.+|.++..... .++.-+.|++|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 554432221111 1222356666666666553211 1234556666666666655422111 12222345666
Q ss_pred eccCccCCCCcchh----hc--CCCCCCeEEccCCc
Q 037679 649 LLGFNQLSGRIPVE----IS--NLTQLQSLQLSSNQ 678 (693)
Q Consensus 649 ~l~~n~~~~~~~~~----l~--~l~~L~~L~l~~n~ 678 (693)
.+..|-++...... |. ..|+|+.|-..+|.
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 66666555332221 11 14555555555553
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.80 E-value=4.1e-05 Score=69.26 Aligned_cols=131 Identities=21% Similarity=0.250 Sum_probs=80.2
Q ss_pred cEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccc
Q 037679 129 VSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNF 208 (693)
Q Consensus 129 ~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i 208 (693)
+.+++.+.++..+.-...-......+++++|.+.....+..++.|..|.++.|.|+.+.|.--..++ .|+.|.+.+|+|
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p-~l~~L~LtnNsi 100 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLP-NLKTLILTNNSI 100 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhcc-ccceEEecCcch
Confidence 3444444444432221122344556666666666566666777777778888877766655333445 688888888877
Q ss_pred cccc-cccccCCCCccEEEccCCcCCCceeeecccccCCCCCCCccCCCCCCceEEecCCCccc
Q 037679 209 YRIV-PQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271 (693)
Q Consensus 209 ~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (693)
.++. -..+..+|.|++|.+-+|+++.. ..........+|+|+.||+.+-...
T Consensus 101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k-----------~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 101 QELGDLDPLASCPKLEYLTLLGNPVEHK-----------KNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred hhhhhcchhccCCccceeeecCCchhcc-----------cCceeEEEEecCcceEeehhhhhHH
Confidence 6542 23456778888888888887632 1122222356888999988876543
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=2.7e-05 Score=53.09 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=23.8
Q ss_pred CCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCC
Q 037679 103 PNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAG 140 (693)
Q Consensus 103 ~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~ 140 (693)
++|++|++++|+++++|+.++++++|++|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 35666666666666666666666666666666666664
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.77 E-value=4.6e-05 Score=68.99 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=59.2
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcE
Q 037679 28 TQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTV 107 (693)
Q Consensus 28 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 107 (693)
.+...+|++.|.+... ..|..++.|..|.+++|+|+...+.. -..+++|..|.|.+|.+.......--..||+|++
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L--~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDL--DTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccch--hhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 3455666666655533 34666666666666666666555533 3445666666666666654443221115666666
Q ss_pred EeccCCCCCchhh----hhhcCCCccEEEcCCCC
Q 037679 108 IGFNSCNLSEFPY----FLHNQDELVSLDLSSNK 137 (693)
Q Consensus 108 L~l~~~~l~~~~~----~l~~l~~L~~L~L~~~~ 137 (693)
|.+-+|..+.-.. .+..+++|++||.++..
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 6666665553322 44556666666655543
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.77 E-value=2.8e-06 Score=71.57 Aligned_cols=135 Identities=19% Similarity=0.273 Sum_probs=83.5
Q ss_pred cccEEEecCccccc--cchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCC
Q 037679 545 SLKALEISSFNFSS--TLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLT 622 (693)
Q Consensus 545 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 622 (693)
.+-.++++.|++-. ..+..+.....|...++++|.+.+.++.. ...++.++.+++.+|.++ .+|..+..+++|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kf---t~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKF---TIKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHH---hhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 44556677765532 23345556667777777777776654432 234566777777777777 4455577777777
Q ss_pred EEEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCccC
Q 037679 623 ALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVPS 685 (693)
Q Consensus 623 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 685 (693)
.++++.|.+. ..|+.+..+.++-.|+..+|... .++-.+-.....-..++.++|+.+.-|.
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 7777777776 55666666777777777777765 3444333333333445566666655543
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.73 E-value=3e-06 Score=71.41 Aligned_cols=108 Identities=23% Similarity=0.352 Sum_probs=53.6
Q ss_pred CCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCccccccc-CCCCCCEEEccCCccCCCccccccCcCcccE
Q 037679 569 QLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGIS-NLTQLTALDLSYNQLTGPIPYSLMKLKKVSS 647 (693)
Q Consensus 569 ~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 647 (693)
.+..+++++|++........ .+.....|+..++++|.+. ..|..|. ..+.++.+++++|.+. .+|..++..+.|+.
T Consensus 28 E~h~ldLssc~lm~i~davy-~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVY-MLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HhhhcccccchhhHHHHHHH-HHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 34455555555543322221 2344445555555555554 3333332 2345555555555554 44545555555555
Q ss_pred EeccCccCCCCcchhhcCCCCCCeEEccCCccc
Q 037679 648 LLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLE 680 (693)
Q Consensus 648 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 680 (693)
|+++.|++. ..|+-+..+.++-.||.-+|.+-
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 555555555 34444444555555555555444
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=4e-05 Score=52.22 Aligned_cols=39 Identities=36% Similarity=0.601 Sum_probs=23.2
Q ss_pred cccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCcc
Q 037679 644 KVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 644 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 684 (693)
+|++|++++|++. .+|..++++++|++|++++|+++ ++|
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 5666666666666 45555666666666666666666 443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00016 Score=74.38 Aligned_cols=137 Identities=21% Similarity=0.323 Sum_probs=66.0
Q ss_pred cccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccE
Q 037679 469 QKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKA 548 (693)
Q Consensus 469 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 548 (693)
..+.+++.|++++|.++. .| .+ -.+|+.|.+.+|.-....|..+ .++|+.|++++|......| .+|+.
T Consensus 49 ~~~~~l~~L~Is~c~L~s-LP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCDIES-LP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRS 116 (426)
T ss_pred HHhcCCCEEEeCCCCCcc-cC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccce
Confidence 345667777887776663 23 11 2357777777764333444322 3467777777763222222 34566
Q ss_pred EEecCccccccchhccCCCC-CCcEEecccCC-CCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEc
Q 037679 549 LEISSFNFSSTLQASLGNLT-QLDSLTISNSN-FSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDL 626 (693)
Q Consensus 549 L~l~~~~~~~~~~~~l~~l~-~L~~L~ls~n~-l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 626 (693)
|++..+.... +..+| +|+.|.+.++. .... ..+. .-.++|++|++++|... ..|..+. .+|+.|++
T Consensus 117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~---~lp~-~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQA---RIDN-LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred EEeCCCCCcc-----cccCcchHhheecccccccccc---cccc-ccCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 6665433221 22232 45666653321 1000 0000 00145666666666654 2333333 56666666
Q ss_pred cCC
Q 037679 627 SYN 629 (693)
Q Consensus 627 ~~n 629 (693)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 554
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.65 E-value=0.00021 Score=73.59 Aligned_cols=139 Identities=27% Similarity=0.263 Sum_probs=87.9
Q ss_pred hhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCc
Q 037679 492 IENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLD 571 (693)
Q Consensus 492 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 571 (693)
+..+..++.|++++|.++ .+|. -..+|++|.+.+|.-....|..+. ++|+.|++++|.-....+ .+|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc------cccc
Confidence 345688999999999766 4442 234699999988765566665553 689999999884222222 3688
Q ss_pred EEecccCCCCccccchhHhhhcCCCCcEEEccCCC-CC-CcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEe
Q 037679 572 SLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCN-LN-NEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLL 649 (693)
Q Consensus 572 ~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~-l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 649 (693)
.|+++++....+. .+ .++|++|.+.++. .. ...+.. -.++|++|++++|... ..|..++ .+|+.|.
T Consensus 116 ~L~L~~n~~~~L~-----~L--PssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 116 SLEIKGSATDSIK-----NV--PNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred eEEeCCCCCcccc-----cC--cchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 8888766543211 11 1357778775433 11 111211 2378999999988765 4555555 6899999
Q ss_pred ccCcc
Q 037679 650 LGFNQ 654 (693)
Q Consensus 650 l~~n~ 654 (693)
++.+.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 88763
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=5.5e-05 Score=84.60 Aligned_cols=132 Identities=20% Similarity=0.312 Sum_probs=72.3
Q ss_pred CCCcEEEccCCcCC-CCCCccccC-CCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCC
Q 037679 28 TQLQIVRLAENQLE-GSVPSSIFE-LRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNF 105 (693)
Q Consensus 28 ~~L~~L~ls~n~i~-~~~~~~~~~-l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L 105 (693)
.+|+.||+++...- ..-+..++. +|.|+.|.+++-.+.... ......++|+|+.||+|++.++.. ...+ ++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl--~GIS-~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL--SGIS-RLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc--HHHh-ccccH
Confidence 55666666664322 111222333 566777766664443222 222345667777777777666655 2333 66777
Q ss_pred cEEeccCCCCCchh--hhhhcCCCccEEEcCCCCCCCCCCCc-------cCCCCCcEEeCCCCCCCC
Q 037679 106 TVIGFNSCNLSEFP--YFLHNQDELVSLDLSSNKIAGQDLLV-------LPWSKMNTLDLGFNKLQG 163 (693)
Q Consensus 106 ~~L~l~~~~l~~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~-------~~~~~L~~L~l~~n~~~~ 163 (693)
+.|.+.+-.+..-. ..+.++++|++||+|.........-. -.++.|+.|+.+++.+.+
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 77666666555221 24566777777777765544422000 146777777777776663
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.54 E-value=0.00017 Score=63.19 Aligned_cols=108 Identities=18% Similarity=0.255 Sum_probs=53.9
Q ss_pred cchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhh
Q 037679 20 IPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLN 99 (693)
Q Consensus 20 ~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 99 (693)
...+|.++++|+.+.+.. .+..+...+|.++.+|+.+++..+ +....... |.++++|+.+.+.+ .+.......|.
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~--F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNA--FSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTT--TTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceee--eecccccccccccc-ccccccccccc
Confidence 345677777777777764 455566667777777777777664 44444444 66776777777765 44444444554
Q ss_pred cCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCC
Q 037679 100 TNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSS 135 (693)
Q Consensus 100 ~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~ 135 (693)
.+++|+.+.+..+ +..++. .+.++ .|+.+.+..
T Consensus 79 -~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 -NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred -ccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 6777777777554 444433 45555 677776654
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.38 E-value=0.00042 Score=60.65 Aligned_cols=119 Identities=18% Similarity=0.274 Sum_probs=71.7
Q ss_pred CCCCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCC
Q 037679 2 NLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLT 81 (693)
Q Consensus 2 ~~~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~ 81 (693)
++++|+.+.+.. .+..+...+|..+++|+.+.+.++ +..+...+|.++..|+.+.+.. .+....... |..+++|+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~--F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNA--FSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTT--TTT-TTEC
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccc--cccccccc
Confidence 456889999985 577788999999999999999885 7767888999999999999976 444344444 88899999
Q ss_pred EEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchh-hhhhcCCCcc
Q 037679 82 ALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFP-YFLHNQDELV 129 (693)
Q Consensus 82 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~l~~l~~L~ 129 (693)
.+++..+ +.......|. ++ +|+.+.+.+ .+..++ .+|.++++|+
T Consensus 85 ~i~~~~~-~~~i~~~~f~-~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFS-NC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEEETTT--BEEHTTTTT-T--T--EEE-TT-B-SS----GGG------
T ss_pred ccccCcc-ccEEchhhhc-CC-CceEEEECC-CccEECCccccccccCC
Confidence 9999875 6667777776 77 999999876 444443 3677776664
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.32 E-value=4.8e-05 Score=83.58 Aligned_cols=133 Identities=25% Similarity=0.181 Sum_probs=87.7
Q ss_pred CCCCcceeecccCCCcCC--CcccccccccCCeeEeccc-ccCCCc----hhhhhcCCCCcEEeccCCc-cccccccccc
Q 037679 446 QLPNLQFLGVMKNPNLTG--YLPQFQKSSLLEDLRLSYT-RFSGKI----PDSIENLESLSYLGISDCS-FIGKIPSSLF 517 (693)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~ 517 (693)
..+.|+.+.+..|..+.. ..+....++.|++|+++++ ...... ......+++|+.+++..+. +++.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 478999999999977665 3455778889999999873 222111 2334567889999999887 6655544444
Q ss_pred c-cCCCcEEEeeCCc-CCCCccc-cccCCccccEEEecCcccccc--chhccCCCCCCcEEecccC
Q 037679 518 N-LTKLEHLYLSGNR-FLDELPT-SIGNLASLKALEISSFNFSST--LQASLGNLTQLDSLTISNS 578 (693)
Q Consensus 518 ~-l~~L~~L~l~~~~-l~~~~~~-~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~ls~n 578 (693)
. +++|++|.+..|. +++.... ....+++|++|++++|..... ......++++++.+.+...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 3 7889999977776 4444332 335688899999998865322 2233445666666654443
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.11 E-value=0.00018 Score=79.12 Aligned_cols=115 Identities=23% Similarity=0.269 Sum_probs=76.0
Q ss_pred ccCCCCcEEEccCCc-CCCC-CCccccCCCCCcEEECCCC-cCCCccc--HHHHhhcCCCCCEEECCCCc-CCchhhhhh
Q 037679 25 RKLTQLQIVRLAENQ-LEGS-VPSSIFELRNLQALDLSNN-NLSGTVD--LNMLLLNLKSLTALVLSSNK-LSLLTRATL 98 (693)
Q Consensus 25 ~~~~~L~~L~ls~n~-i~~~-~~~~~~~l~~L~~L~Ls~n-~~~~~~~--~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~ 98 (693)
..++.|+.|.+.++. +.+. .-.....+++|+.|+++++ ......+ .......+++|++|+++++. +++.....+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 346888888888774 3321 2345677888888888773 2221221 11124557888888888877 777777777
Q ss_pred hcCCCCCcEEeccCCC-CC--chhhhhhcCCCccEEEcCCCCCC
Q 037679 99 NTNLPNFTVIGFNSCN-LS--EFPYFLHNQDELVSLDLSSNKIA 139 (693)
Q Consensus 99 ~~~l~~L~~L~l~~~~-l~--~~~~~l~~l~~L~~L~L~~~~~~ 139 (693)
...+++|+.|.+.+|. ++ .+......++.|++|+++++...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 7668888888877776 45 33445567788888888877665
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.05 E-value=0.00036 Score=66.20 Aligned_cols=87 Identities=25% Similarity=0.332 Sum_probs=43.0
Q ss_pred cCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCC--cCCchhhhhhhcCCCCCcEEeccCCCCCchh--hhhhc
Q 037679 49 FELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSN--KLSLLTRATLNTNLPNFTVIGFNSCNLSEFP--YFLHN 124 (693)
Q Consensus 49 ~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~l~~ 124 (693)
-.+..|+.|.+.+..+++... |-.+++|+.|.++.| ++..-. ..+...+|+|+++++++|+++.+. ..+..
T Consensus 40 d~~~~le~ls~~n~gltt~~~----~P~Lp~LkkL~lsdn~~~~~~~l-~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN----FPKLPKLKKLELSDNYRRVSGGL-EVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred ccccchhhhhhhccceeeccc----CCCcchhhhhcccCCcccccccc-eehhhhCCceeEEeecCCccccccccchhhh
Confidence 334445555555555443333 344556666666665 222111 112224466666666666555211 13556
Q ss_pred CCCccEEEcCCCCCCC
Q 037679 125 QDELVSLDLSSNKIAG 140 (693)
Q Consensus 125 l~~L~~L~L~~~~~~~ 140 (693)
+.+|..|++++|..+.
T Consensus 115 l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTN 130 (260)
T ss_pred hcchhhhhcccCCccc
Confidence 6666666666666554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=5.9e-05 Score=71.50 Aligned_cols=101 Identities=22% Similarity=0.181 Sum_probs=73.7
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCc
Q 037679 27 LTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFT 106 (693)
Q Consensus 27 ~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 106 (693)
+.+.+.|+.=++.++++ .-...++.|++|.||-|++++..+ |..|.+|++|+|+.|.|.++.....-.++|+|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p----l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP----LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh----HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 55667777777777755 345678889999999998887766 778889999999999888777665555888888
Q ss_pred EEeccCCCCC--ch----hhhhhcCCCccEEEc
Q 037679 107 VIGFNSCNLS--EF----PYFLHNQDELVSLDL 133 (693)
Q Consensus 107 ~L~l~~~~l~--~~----~~~l~~l~~L~~L~L 133 (693)
.|.|..|..- .- ...+..+++|+.||=
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 8888777443 11 124667777777753
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00068 Score=64.33 Aligned_cols=104 Identities=24% Similarity=0.256 Sum_probs=46.0
Q ss_pred CCCcEEeccCCcccccccccccccCCCcEEEeeCC--cCCCCccccccCCccccEEEecCcccccc-chhccCCCCCCcE
Q 037679 496 ESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGN--RFLDELPTSIGNLASLKALEISSFNFSST-LQASLGNLTQLDS 572 (693)
Q Consensus 496 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~ 572 (693)
..|+.+++.++.++.. ..|-.+++|+.|.++.| .+..........+|+|+++.+++|.+... ....+..+.+|.+
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3444444444433321 12334455555555555 33232333333445556665555554421 1123344455556
Q ss_pred EecccCCCCccccchhHhhhcCCCCcEEE
Q 037679 573 LTISNSNFSRLMSSSLSWLTNLNQLTSLN 601 (693)
Q Consensus 573 L~ls~n~l~~~~~~~~~~l~~l~~L~~L~ 601 (693)
|++.+|..+......-.-+.-+++|+.|+
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccc
Confidence 66666655543332222233445555544
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=9.8e-05 Score=70.07 Aligned_cols=97 Identities=24% Similarity=0.238 Sum_probs=65.3
Q ss_pred CCCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCcc--CCCCCcEE
Q 037679 77 LKSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVL--PWSKMNTL 154 (693)
Q Consensus 77 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~--~~~~L~~L 154 (693)
+.+.+.|++-++.+.++. ++.+|+.|+.|.|+-|.++++.. +..|++|++|+|..|.|.++..... ++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 556777788887776543 33488888888888888887744 7788888888888888877443322 66777777
Q ss_pred eCCCCCCCCCCCCC-------CCCCCCEEe
Q 037679 155 DLGFNKLQGPLPVP-------SLNGLQALD 177 (693)
Q Consensus 155 ~l~~n~~~~~~~~~-------~l~~L~~L~ 177 (693)
++..|.=.+..+-. -+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77766544332221 566666665
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.83 E-value=0.0038 Score=35.26 Aligned_cols=22 Identities=50% Similarity=0.679 Sum_probs=17.0
Q ss_pred CCCeEEccCCcccCCccCccccc
Q 037679 668 QLQSLQLSSNQLEGSVPSSIFEL 690 (693)
Q Consensus 668 ~L~~L~l~~n~~~~~~p~~~~~~ 690 (693)
+|++||+++|.++ .+|++|.+|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4788888888888 888886654
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.005 Score=56.18 Aligned_cols=79 Identities=25% Similarity=0.295 Sum_probs=35.7
Q ss_pred CcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCccc-ccc-cCCCCCCEEEccCC-ccCCCccccccCcCccc
Q 037679 570 LDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIP-FGI-SNLTQLTALDLSYN-QLTGPIPYSLMKLKKVS 646 (693)
Q Consensus 570 L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~l-~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~ 646 (693)
++.++.+++.+... .+..+..++.++.|.+.+|.-.+.-. +-+ +-.++|+.|++++| +|++..-.++..+++|+
T Consensus 103 IeaVDAsds~I~~e---Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSSIMYE---GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred EEEEecCCchHHHH---HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 45555555544432 33344555555555555554332211 000 12345555555544 44433444444444555
Q ss_pred EEecc
Q 037679 647 SLLLG 651 (693)
Q Consensus 647 ~L~l~ 651 (693)
.|.+.
T Consensus 180 ~L~l~ 184 (221)
T KOG3864|consen 180 RLHLY 184 (221)
T ss_pred HHHhc
Confidence 54444
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.22 E-value=0.0007 Score=72.56 Aligned_cols=136 Identities=26% Similarity=0.310 Sum_probs=66.2
Q ss_pred cccEEEecCcccccc----chhccCCCCCCcEEecccCCCCcccc----chhHh-hhcCCCCcEEEccCCCCCCccc---
Q 037679 545 SLKALEISSFNFSST----LQASLGNLTQLDSLTISNSNFSRLMS----SSLSW-LTNLNQLTSLNFPYCNLNNEIP--- 612 (693)
Q Consensus 545 ~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~----~~~~~-l~~l~~L~~L~l~~~~l~~~~~--- 612 (693)
.++.|++..|.++.. ..+.+.....++.++++.|.+..... ..++. +....++++|.+++|.++....
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 344455555544433 22333445555555555555431111 11110 1234556666666666553211
Q ss_pred -ccccCCCC-CCEEEccCCccCCC----ccccccCc-CcccEEeccCccCCCC----cchhhcCCCCCCeEEccCCccc
Q 037679 613 -FGISNLTQ-LTALDLSYNQLTGP----IPYSLMKL-KKVSSLLLGFNQLSGR----IPVEISNLTQLQSLQLSSNQLE 680 (693)
Q Consensus 613 -~~l~~l~~-L~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~ 680 (693)
..+...++ +.+|++++|++.+. ....+... ..++.++++.|++.+. +...+..++.++++.++.|++.
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 22333444 55566666666533 22233333 4556677777776643 3334445666667777766654
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.41 E-value=0.0016 Score=69.79 Aligned_cols=189 Identities=26% Similarity=0.229 Sum_probs=94.6
Q ss_pred ccEEEcccccccCc----cchhhccCCCCcEEEccCCcCCCCCCcc----ccCC-CCCcEEECCCCcCCCccc--HHHHh
Q 037679 6 LSTLYLQHNQLTGH----IPVEIRKLTQLQIVRLAENQLEGSVPSS----IFEL-RNLQALDLSNNNLSGTVD--LNMLL 74 (693)
Q Consensus 6 l~~L~ls~~~l~~~----~~~~~~~~~~L~~L~ls~n~i~~~~~~~----~~~l-~~L~~L~Ls~n~~~~~~~--~~~~l 74 (693)
+..|.+.+|.+... +..++...+.|..|++++|.+.+..... +... ..|++|++..|.+++... ..+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 45556666665533 3444455667777777777666442222 2222 345566666666554332 12224
Q ss_pred hcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCc-----cCCC
Q 037679 75 LNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLV-----LPWS 149 (693)
Q Consensus 75 ~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-----~~~~ 149 (693)
....+++.++++.|.+...+.......+++ .+....++++|.+.+|.++...... ...+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~----------------~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~ 232 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALES----------------AASPLSSLETLKLSRCGVTSSSCALLDEVLASGE 232 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhh----------------hhcccccHHHHhhhhcCcChHHHHHHHHHHhccc
Confidence 445666666666666543332221111110 1223445555555555544321111 1122
Q ss_pred C-CcEEeCCCCCCCCCCCC------CCC-CCCCEEeCCCCCCCCCcccc----cccccccccEEEccccccccc
Q 037679 150 K-MNTLDLGFNKLQGPLPV------PSL-NGLQALDLSYNNLSGMLPEC----LGNFSVELSALKLQANNFYRI 211 (693)
Q Consensus 150 ~-L~~L~l~~n~~~~~~~~------~~l-~~L~~L~L~~~~i~~~~~~~----~~~~~~~L~~L~L~~~~i~~~ 211 (693)
. +.++++..|.+...... ... +.+++++++.|+|.+..... +..+. .++.+.++.|.+...
T Consensus 233 ~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~-~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 233 SLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCR-QLEELSLSNNPLTDY 305 (478)
T ss_pred hhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhH-HHHHhhcccCccccH
Confidence 2 44455555555432111 122 56678888888877554333 34455 788888888877644
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.88 E-value=0.026 Score=51.69 Aligned_cols=83 Identities=20% Similarity=0.172 Sum_probs=55.5
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhh-cCCCCCEEECCCC-cCCchhhhhhhcCCCCC
Q 037679 28 TQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLL-NLKSLTALVLSSN-KLSLLTRATLNTNLPNF 105 (693)
Q Consensus 28 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~-~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~L 105 (693)
..++.+|-++..|..+.-+.+.+++.++.|.+.+|.-.+..... .++ -.++|+.|+|++| +|++.+...+- .+++|
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~-~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknL 178 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLE-RLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNL 178 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHH-HhcccccchheeeccCCCeechhHHHHHH-Hhhhh
Confidence 34667777777777677777777788888887777765554433 222 3578888888865 46666665555 67777
Q ss_pred cEEeccC
Q 037679 106 TVIGFNS 112 (693)
Q Consensus 106 ~~L~l~~ 112 (693)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7776655
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.76 E-value=0.077 Score=27.70 Aligned_cols=17 Identities=47% Similarity=0.796 Sum_probs=8.4
Q ss_pred CCCCeEEccCCcccCCcc
Q 037679 667 TQLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 667 ~~L~~L~l~~n~~~~~~p 684 (693)
++|+.|++++|.+. ++|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 35677777777765 554
No 77
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.74 E-value=0.048 Score=30.70 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=8.0
Q ss_pred CcEEeccCCCCCchhhhh
Q 037679 105 FTVIGFNSCNLSEFPYFL 122 (693)
Q Consensus 105 L~~L~l~~~~l~~~~~~l 122 (693)
|++|++++|+++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 344444444444444433
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.94 E-value=0.18 Score=29.71 Aligned_cols=23 Identities=48% Similarity=0.775 Sum_probs=16.8
Q ss_pred CCCCCeEEccCCcccCCccCcccc
Q 037679 666 LTQLQSLQLSSNQLEGSVPSSIFE 689 (693)
Q Consensus 666 l~~L~~L~l~~n~~~~~~p~~~~~ 689 (693)
+++|++|++++|.+. .+|+..+.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356788888888888 77766554
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.94 E-value=0.18 Score=29.71 Aligned_cols=23 Identities=48% Similarity=0.775 Sum_probs=16.8
Q ss_pred CCCCCeEEccCCcccCCccCcccc
Q 037679 666 LTQLQSLQLSSNQLEGSVPSSIFE 689 (693)
Q Consensus 666 l~~L~~L~l~~n~~~~~~p~~~~~ 689 (693)
+++|++|++++|.+. .+|+..+.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356788888888888 77766554
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.84 E-value=0.17 Score=26.41 Aligned_cols=13 Identities=8% Similarity=0.327 Sum_probs=4.3
Q ss_pred CcEEeccCCCCCc
Q 037679 105 FTVIGFNSCNLSE 117 (693)
Q Consensus 105 L~~L~l~~~~l~~ 117 (693)
|+.|++++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444433
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.87 E-value=0.78 Score=26.87 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=7.8
Q ss_pred CCCcEEEccCCcCCCC
Q 037679 28 TQLQIVRLAENQLEGS 43 (693)
Q Consensus 28 ~~L~~L~ls~n~i~~~ 43 (693)
++|++|++++|.+..+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555433
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.87 E-value=0.78 Score=26.87 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=7.8
Q ss_pred CCCcEEEccCCcCCCC
Q 037679 28 TQLQIVRLAENQLEGS 43 (693)
Q Consensus 28 ~~L~~L~ls~n~i~~~ 43 (693)
++|++|++++|.+..+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555433
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.34 E-value=0.62 Score=26.72 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=9.5
Q ss_pred CCCCEEECCCCcCCchhhhh
Q 037679 78 KSLTALVLSSNKLSLLTRAT 97 (693)
Q Consensus 78 ~~L~~L~L~~~~~~~~~~~~ 97 (693)
++|++|+|++|.+++.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45556666665555444433
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.42 E-value=0.055 Score=50.60 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=72.2
Q ss_pred cccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcC
Q 037679 11 LQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKL 90 (693)
Q Consensus 11 ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 90 (693)
++-..++.+.-.+++.++..+.||++.|+.. -.-..|+-+..|..|+++.|++. ..|.+ +.....++++++..|..
T Consensus 25 ~s~s~~s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d--~~q~~e~~~~~~~~n~~ 100 (326)
T KOG0473|consen 25 LSLSELSEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKD--AKQQRETVNAASHKNNH 100 (326)
T ss_pred CCHHHhcccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhh--HHHHHHHHHHHhhccch
Confidence 3444555566667788888889999888766 34467888888888899888876 33444 56777778888877766
Q ss_pred CchhhhhhhcCCCCCcEEeccCCCCC
Q 037679 91 SLLTRATLNTNLPNFTVIGFNSCNLS 116 (693)
Q Consensus 91 ~~~~~~~~~~~l~~L~~L~l~~~~l~ 116 (693)
+. .|.++. ..+.++.+++.++.++
T Consensus 101 ~~-~p~s~~-k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 101 SQ-QPKSQK-KEPHPKKNEQKKTEFF 124 (326)
T ss_pred hh-CCcccc-ccCCcchhhhccCcch
Confidence 53 445566 8888888888887755
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.43 E-value=0.072 Score=49.84 Aligned_cols=93 Identities=17% Similarity=0.112 Sum_probs=70.9
Q ss_pred CCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhh
Q 037679 43 SVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFL 122 (693)
Q Consensus 43 ~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l 122 (693)
+....+.....-+.||++.|++..... .|+-+..|..|+++.|.+. .-+..+. ....+++++++.|..+..|.++
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~vn~~~---n~s~~t~~~rl~~sknq~~-~~~~d~~-q~~e~~~~~~~~n~~~~~p~s~ 107 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRLVNLGK---NFSILTRLVRLDLSKNQIK-FLPKDAK-QQRETVNAASHKNNHSQQPKSQ 107 (326)
T ss_pred cchhhhhccceeeeehhhhhHHHhhcc---chHHHHHHHHHhccHhhHh-hChhhHH-HHHHHHHHHhhccchhhCCccc
Confidence 334556667788889999988765443 2566778888899988764 3344555 7778888899999888889999
Q ss_pred hcCCCccEEEcCCCCCCC
Q 037679 123 HNQDELVSLDLSSNKIAG 140 (693)
Q Consensus 123 ~~l~~L~~L~L~~~~~~~ 140 (693)
+..++++++++-++.++-
T Consensus 108 ~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred cccCCcchhhhccCcchH
Confidence 999999999998887654
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.69 E-value=2.1 Score=25.16 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=16.1
Q ss_pred CCCCeEEccCCcccCCccCcc
Q 037679 667 TQLQSLQLSSNQLEGSVPSSI 687 (693)
Q Consensus 667 ~~L~~L~l~~n~~~~~~p~~~ 687 (693)
++|+.|++++|.+. ++|+..
T Consensus 2 ~~L~~L~vs~N~Lt-~LPeL~ 21 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPELX 21 (26)
T ss_pred cccceeecCCCccc-cCcccc
Confidence 56888999999988 888754
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=70.10 E-value=3.8 Score=24.55 Aligned_cols=20 Identities=40% Similarity=0.277 Sum_probs=10.6
Q ss_pred CCCCEEECCCCcCCchhhhh
Q 037679 78 KSLTALVLSSNKLSLLTRAT 97 (693)
Q Consensus 78 ~~L~~L~L~~~~~~~~~~~~ 97 (693)
++|++|+|++|.+.+.+-..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARA 21 (28)
T ss_pred CccCEEECCCCCCCHHHHHH
Confidence 35556666666555444433
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.03 E-value=5.8 Score=23.35 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=7.6
Q ss_pred CCCcEEEccCCcCC
Q 037679 28 TQLQIVRLAENQLE 41 (693)
Q Consensus 28 ~~L~~L~ls~n~i~ 41 (693)
++|+.|++++|.|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 44555555555554
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.66 E-value=7.6 Score=41.65 Aligned_cols=66 Identities=32% Similarity=0.293 Sum_probs=41.5
Q ss_pred hhcCCCccEEEcCCCCCCCCCCCc---cCCCCCcEEeCCCC--CCCCCCCC--CCCCCCCEEeCCCCCCCCCc
Q 037679 122 LHNQDELVSLDLSSNKIAGQDLLV---LPWSKMNTLDLGFN--KLQGPLPV--PSLNGLQALDLSYNNLSGML 187 (693)
Q Consensus 122 l~~l~~L~~L~L~~~~~~~~~~~~---~~~~~L~~L~l~~n--~~~~~~~~--~~l~~L~~L~L~~~~i~~~~ 187 (693)
-.+.+.+..++|++|++..++... ...++|+.|+|++| .+...... .+...|++|.+.+|.+....
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 356667777777777776543321 36677778888877 33322222 25667788888888877553
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.98 E-value=12 Score=40.29 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=35.9
Q ss_pred hcCCCCCEEECCCCcCCchhh-hhhhcCCCCCcEEeccCC--CCCchhhhhh--cCCCccEEEcCCCCCCC
Q 037679 75 LNLKSLTALVLSSNKLSLLTR-ATLNTNLPNFTVIGFNSC--NLSEFPYFLH--NQDELVSLDLSSNKIAG 140 (693)
Q Consensus 75 ~~l~~L~~L~L~~~~~~~~~~-~~~~~~l~~L~~L~l~~~--~l~~~~~~l~--~l~~L~~L~L~~~~~~~ 140 (693)
.+.+.+..++|++|++..... .++...-|+|..|+|++| .+.+- .++. +...|++|-+.+|.+.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCcccc
Confidence 355666666677766544332 223335567777777776 22221 1232 23346677777777765
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=52.01 E-value=11 Score=21.96 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=8.9
Q ss_pred CCcceeecccCCCcC
Q 037679 448 PNLQFLGVMKNPNLT 462 (693)
Q Consensus 448 ~~L~~L~l~~~~~~~ 462 (693)
++|++|++++|+.++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 556666666665443
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=44.80 E-value=1.4e+02 Score=31.88 Aligned_cols=231 Identities=18% Similarity=0.076 Sum_probs=113.6
Q ss_pred CCcEEEccCCcCCCCCCccccCC---CCCcEEECCCCcCCCcccHHHH-hhcCCCCCEEECCCCcCCchh--------hh
Q 037679 29 QLQIVRLAENQLEGSVPSSIFEL---RNLQALDLSNNNLSGTVDLNML-LLNLKSLTALVLSSNKLSLLT--------RA 96 (693)
Q Consensus 29 ~L~~L~ls~n~i~~~~~~~~~~l---~~L~~L~Ls~n~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~--------~~ 96 (693)
.+.+++++.|...+.+|.....+ .-++.++.+...+....-.... +....+|++.+++.|..+..- ..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 46667777776655555433332 3466666666554422211111 334557777777766543211 11
Q ss_pred hhhcCCCCCcEEeccCCCCC--chhhhh-h----cCCCccEEEcCCCCCCCCCCCc--cCCCCCcEEeCCCCCCCCCC--
Q 037679 97 TLNTNLPNFTVIGFNSCNLS--EFPYFL-H----NQDELVSLDLSSNKIAGQDLLV--LPWSKMNTLDLGFNKLQGPL-- 165 (693)
Q Consensus 97 ~~~~~l~~L~~L~l~~~~l~--~~~~~l-~----~l~~L~~L~L~~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~-- 165 (693)
.|. .=+++ +|++..+... ..+..+ + ..+.=-+++++.|......... .+-..++++....|+..+..
T Consensus 295 ~fS-~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~ 372 (553)
T KOG4242|consen 295 TFS-PDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGA 372 (553)
T ss_pred ccC-cCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeecccccccccccc
Confidence 122 33445 6666665443 222111 1 1111225556665554422211 23344888888888776432
Q ss_pred --CCCCCCCCCEEeCCCCCCC-----CCcccccccc---cccccEEEccccccccc---ccccccCCCCccEEEccCCcC
Q 037679 166 --PVPSLNGLQALDLSYNNLS-----GMLPECLGNF---SVELSALKLQANNFYRI---VPQTFMNGTNLMMIDFSNNSL 232 (693)
Q Consensus 166 --~~~~l~~L~~L~L~~~~i~-----~~~~~~~~~~---~~~L~~L~L~~~~i~~~---~~~~~~~~~~L~~L~l~~n~l 232 (693)
....-+..+.+++.+..-. ......+... ..-+..+.++.|....- .-..+...+.+.+|++++|..
T Consensus 373 vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 373 VGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGM 452 (553)
T ss_pred ccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCc
Confidence 2225566666666554321 1111111111 01456677777765322 123456788899999999987
Q ss_pred CCceeeecccccCCCCCCCccCCCCCCceEEecCCCccc
Q 037679 233 QGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271 (693)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (693)
++ .+..+.+.+...-..++.+..+.|...
T Consensus 453 gd----------~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 453 GD----------GGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cc----------CCCCcCccccCCCCccCCCCCCCCCcc
Confidence 64 233333443344445666666555443
Done!