Query 037679
Match_columns 693
No_of_seqs 169 out of 1922
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 04:57:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7E-59 2.4E-63 535.8 40.5 598 4-686 50-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 4E-56 1.4E-60 512.8 36.1 593 2-684 98-744 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 9.6E-52 3.3E-56 472.1 46.9 578 5-684 26-626 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.5E-50 1.6E-54 458.3 46.3 573 6-687 6-604 (680)
5 3t6q_A CD180 antigen; protein- 100.0 7.6E-50 2.6E-54 450.3 40.1 539 6-684 14-564 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-47 7.7E-52 430.1 37.9 531 7-684 14-562 (606)
7 3t6q_A CD180 antigen; protein- 100.0 3.9E-47 1.3E-51 428.2 38.9 511 4-657 33-561 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-45 4.5E-50 415.7 35.8 521 30-691 13-544 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 1.9E-44 6.4E-49 403.5 35.2 514 6-686 9-537 (570)
10 3j0a_A TOLL-like receptor 5; m 100.0 4.9E-44 1.7E-48 416.3 35.8 535 7-684 7-564 (844)
11 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-42 6.4E-47 385.3 33.2 497 4-684 5-514 (549)
12 3j0a_A TOLL-like receptor 5; m 100.0 3.2E-42 1.1E-46 401.0 35.7 520 31-692 7-551 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 1.3E-41 4.3E-46 380.6 33.2 487 4-660 28-535 (570)
14 4g8a_A TOLL-like receptor 4; l 100.0 2.7E-39 9.4E-44 366.5 34.3 536 7-684 34-584 (635)
15 2z81_A CD282 antigen, TOLL-lik 100.0 7.6E-40 2.6E-44 364.2 28.1 477 3-660 25-514 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 6.6E-39 2.3E-43 354.0 32.5 180 496-684 302-485 (520)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-38 5E-43 351.3 28.8 467 7-658 3-483 (520)
18 4eco_A Uncharacterized protein 100.0 1E-39 3.6E-44 367.4 18.3 162 470-657 431-601 (636)
19 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.5E-37 1.5E-41 342.3 29.6 180 496-684 331-514 (562)
20 4g8a_A TOLL-like receptor 4; l 100.0 3.9E-36 1.3E-40 340.6 37.6 514 32-690 35-565 (635)
21 4eco_A Uncharacterized protein 100.0 1.9E-37 6.5E-42 349.0 25.7 427 4-583 81-602 (636)
22 4ecn_A Leucine-rich repeat pro 100.0 3.6E-37 1.2E-41 352.1 26.7 398 113-680 435-864 (876)
23 4ecn_A Leucine-rich repeat pro 100.0 1.8E-36 6.3E-41 346.3 30.2 299 4-371 323-710 (876)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.6E-34 8.9E-39 319.9 28.3 212 473-693 277-499 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 5.4E-33 1.8E-37 301.5 30.3 388 7-560 13-411 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.2E-32 4E-37 298.8 30.4 139 543-684 274-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 1.3E-33 4.3E-38 303.9 19.5 176 472-688 257-437 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 2.2E-33 7.5E-38 302.1 20.4 179 448-664 257-437 (454)
29 1o6v_A Internalin A; bacterial 100.0 5.4E-31 1.9E-35 286.0 35.2 344 103-633 46-389 (466)
30 1o6v_A Internalin A; bacterial 100.0 4.1E-31 1.4E-35 287.0 33.6 195 444-657 195-389 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 2E-31 6.9E-36 287.0 27.8 218 16-272 30-247 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 2.5E-31 8.4E-36 286.4 26.1 198 38-271 28-225 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 8.1E-30 2.8E-34 278.0 29.2 184 470-656 150-333 (477)
34 4fmz_A Internalin; leucine ric 100.0 1.4E-28 4.6E-33 256.7 30.5 195 24-271 40-234 (347)
35 4fmz_A Internalin; leucine ric 100.0 1.5E-28 5.2E-33 256.3 29.5 283 2-371 42-324 (347)
36 2id5_A Lingo-1, leucine rich r 100.0 4.4E-29 1.5E-33 272.2 26.2 238 444-684 100-337 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 2.7E-28 9.3E-33 258.6 25.7 194 26-232 43-238 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 1.1E-27 3.9E-32 253.8 26.4 288 2-371 43-331 (390)
39 3oja_B Anopheles plasmodium-re 100.0 2E-27 6.7E-32 265.9 25.8 193 27-232 50-244 (597)
40 1z7x_W Ribonuclease inhibitor; 100.0 2.8E-30 9.6E-35 280.6 -0.7 112 29-140 4-127 (461)
41 3oja_B Anopheles plasmodium-re 100.0 8.7E-27 3E-31 260.7 26.7 287 3-371 50-337 (597)
42 1xku_A Decorin; proteoglycan, 99.9 2.4E-26 8.3E-31 237.7 26.3 293 5-369 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 99.9 9.9E-27 3.4E-31 240.8 22.3 293 5-369 34-331 (332)
44 1z7x_W Ribonuclease inhibitor; 99.9 2.5E-29 8.4E-34 273.1 -0.4 246 441-686 163-446 (461)
45 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-26 5.2E-31 236.8 16.0 257 424-686 50-310 (313)
46 1xku_A Decorin; proteoglycan, 99.9 4.6E-25 1.6E-29 228.1 27.1 268 335-678 53-330 (330)
47 2ft3_A Biglycan; proteoglycan, 99.9 8.3E-25 2.8E-29 226.3 25.6 130 448-578 193-330 (332)
48 3ogk_B Coronatine-insensitive 99.9 7.7E-27 2.6E-31 261.9 10.7 136 75-229 109-252 (592)
49 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-25 3.9E-30 230.3 16.6 239 448-692 50-292 (313)
50 3ogk_B Coronatine-insensitive 99.9 1.9E-26 6.4E-31 258.7 8.6 201 26-228 110-326 (592)
51 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-24 4.1E-29 220.0 18.3 221 7-234 14-239 (285)
52 2z66_A Variable lymphocyte rec 99.9 3.3E-24 1.1E-28 219.1 21.2 244 7-272 10-262 (306)
53 3zyi_A Leucine-rich repeat-con 99.9 5.6E-24 1.9E-28 229.8 23.5 245 6-271 56-303 (452)
54 3zyj_A Leucine-rich repeat-con 99.9 6.4E-24 2.2E-28 228.5 23.5 245 6-271 45-292 (440)
55 4fcg_A Uncharacterized protein 99.9 3.1E-24 1.1E-28 221.0 18.5 224 3-232 80-313 (328)
56 3zyj_A Leucine-rich repeat-con 99.9 6.2E-24 2.1E-28 228.6 20.8 225 4-233 64-292 (440)
57 3zyi_A Leucine-rich repeat-con 99.9 5.2E-24 1.8E-28 230.1 19.7 225 4-233 75-303 (452)
58 4fcg_A Uncharacterized protein 99.9 1.7E-23 5.9E-28 215.4 22.0 227 446-680 79-314 (328)
59 2p1m_B Transport inhibitor res 99.9 1.4E-25 4.8E-30 251.8 6.5 166 46-230 60-245 (594)
60 2z66_A Variable lymphocyte rec 99.9 2E-23 6.7E-28 213.4 19.9 249 428-683 11-264 (306)
61 2z80_A TOLL-like receptor 2, v 99.9 1.4E-23 4.7E-28 219.1 18.7 239 442-684 70-318 (353)
62 2z80_A TOLL-like receptor 2, v 99.9 8.6E-24 3E-28 220.6 16.2 258 335-659 53-317 (353)
63 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-22 3.7E-27 205.6 20.8 206 473-681 33-239 (285)
64 1wwl_A Monocyte differentiatio 99.9 1.3E-23 4.5E-28 215.0 10.6 226 450-681 65-310 (312)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1E-23 3.6E-28 216.3 9.7 258 6-294 12-273 (317)
66 2p1m_B Transport inhibitor res 99.9 2.8E-24 9.4E-29 241.2 4.4 408 169-678 103-542 (594)
67 3o53_A Protein LRIM1, AGAP0063 99.9 6.7E-23 2.3E-27 210.3 12.0 250 426-691 12-262 (317)
68 3g06_A SSPH2 (leucine-rich rep 99.9 5.7E-21 2E-25 211.5 27.7 258 5-372 41-298 (622)
69 1wwl_A Monocyte differentiatio 99.9 1.7E-22 6E-27 206.7 12.0 176 50-233 93-287 (312)
70 3oja_A Leucine-rich immune mol 99.9 9E-22 3.1E-26 213.7 15.8 239 20-289 22-268 (487)
71 2o6q_A Variable lymphocyte rec 99.9 1.1E-20 3.9E-25 188.9 21.5 200 6-233 18-218 (270)
72 2z62_A TOLL-like receptor 4, v 99.9 1.9E-21 6.6E-26 195.4 15.8 219 8-234 11-238 (276)
73 3oja_A Leucine-rich immune mol 99.9 1E-21 3.5E-26 213.2 14.1 229 446-690 32-261 (487)
74 2z62_A TOLL-like receptor 4, v 99.9 5E-21 1.7E-25 192.3 17.6 208 473-684 29-241 (276)
75 2o6q_A Variable lymphocyte rec 99.9 1.9E-20 6.6E-25 187.3 21.3 184 473-683 38-221 (270)
76 3g06_A SSPH2 (leucine-rich rep 99.9 6.1E-20 2.1E-24 203.3 26.3 60 496-560 241-300 (622)
77 3rfs_A Internalin B, repeat mo 99.8 1.1E-20 3.6E-25 189.3 15.8 210 468-691 37-246 (272)
78 3rfs_A Internalin B, repeat mo 99.8 4E-21 1.4E-25 192.4 12.1 201 48-277 37-241 (272)
79 1h6u_A Internalin H; cell adhe 99.8 5.1E-20 1.7E-24 187.7 18.7 195 24-234 37-231 (308)
80 1p9a_G Platelet glycoprotein I 99.8 1.8E-19 6.2E-24 181.7 21.0 180 24-233 6-185 (290)
81 1p9a_G Platelet glycoprotein I 99.8 1.8E-19 6.1E-24 181.8 19.6 203 444-656 6-208 (290)
82 1h6u_A Internalin H; cell adhe 99.8 1.2E-19 4.2E-24 184.9 18.4 210 34-276 25-234 (308)
83 4glp_A Monocyte differentiatio 99.8 5.4E-20 1.8E-24 188.0 14.5 230 447-681 63-308 (310)
84 2ast_B S-phase kinase-associat 99.8 1.6E-20 5.6E-25 194.5 9.9 255 426-689 49-315 (336)
85 4glp_A Monocyte differentiatio 99.8 8.9E-20 3E-24 186.4 14.7 223 5-234 65-308 (310)
86 2xwt_C Thyrotropin receptor; s 99.8 4.1E-20 1.4E-24 181.3 10.0 178 28-233 31-218 (239)
87 2ast_B S-phase kinase-associat 99.8 2.6E-20 8.8E-25 193.0 8.6 247 5-277 48-312 (336)
88 3goz_A Leucine-rich repeat-con 99.8 5.3E-20 1.8E-24 192.4 10.2 260 8-276 2-302 (362)
89 3goz_A Leucine-rich repeat-con 99.8 4.7E-20 1.6E-24 192.8 9.7 254 429-682 3-299 (362)
90 2ca6_A RAN GTPase-activating p 99.8 4.1E-20 1.4E-24 195.2 8.5 257 19-286 23-333 (386)
91 2ca6_A RAN GTPase-activating p 99.8 1.4E-20 4.9E-25 198.8 4.7 246 439-684 23-320 (386)
92 2xwt_C Thyrotropin receptor; s 99.8 3.3E-19 1.1E-23 174.8 12.8 198 472-678 31-237 (239)
93 3m19_A Variable lymphocyte rec 99.8 4.1E-18 1.4E-22 168.3 18.9 179 473-657 15-193 (251)
94 3m19_A Variable lymphocyte rec 99.8 7.8E-18 2.7E-22 166.3 18.6 177 6-233 16-192 (251)
95 4ay9_X Follicle-stimulating ho 99.7 4E-18 1.4E-22 177.2 12.5 238 7-268 12-256 (350)
96 1h6t_A Internalin B; cell adhe 99.7 2.2E-17 7.6E-22 166.6 15.1 190 10-215 30-219 (291)
97 1h6t_A Internalin B; cell adhe 99.7 5.2E-17 1.8E-21 163.8 16.3 192 28-235 24-215 (291)
98 2o6s_A Variable lymphocyte rec 99.7 4.5E-17 1.6E-21 155.8 14.3 180 475-667 10-189 (208)
99 1m9s_A Internalin B; cell inva 99.7 3.3E-17 1.1E-21 181.2 13.8 194 8-217 25-218 (605)
100 4ay9_X Follicle-stimulating ho 99.7 1.9E-17 6.4E-22 172.1 11.0 219 4-230 30-256 (350)
101 2o6s_A Variable lymphocyte rec 99.7 4E-17 1.4E-21 156.2 12.5 178 7-195 10-189 (208)
102 4ezg_A Putative uncharacterize 99.7 9.8E-17 3.3E-21 152.0 12.4 152 25-184 41-194 (197)
103 3cvr_A Invasion plasmid antige 99.7 1.9E-16 6.6E-21 173.1 15.7 167 496-690 80-253 (571)
104 1m9s_A Internalin B; cell inva 99.7 2.3E-16 7.9E-21 174.5 14.8 178 2-192 41-218 (605)
105 3e6j_A Variable lymphocyte rec 99.7 6.5E-16 2.2E-20 150.0 16.2 132 6-143 21-152 (229)
106 1xeu_A Internalin C; cellular 99.7 6.3E-17 2.2E-21 160.6 8.0 165 6-184 21-185 (263)
107 3cvr_A Invasion plasmid antige 99.7 9.4E-16 3.2E-20 167.6 16.8 177 29-233 60-243 (571)
108 2v9t_B SLIT homolog 2 protein 99.7 8.9E-16 3.1E-20 147.9 14.5 149 7-161 14-164 (220)
109 4ezg_A Putative uncharacterize 99.7 5.5E-16 1.9E-20 146.7 12.3 151 3-162 43-194 (197)
110 2v9t_B SLIT homolog 2 protein 99.6 1.7E-15 6E-20 145.9 15.7 152 499-656 14-165 (220)
111 2v70_A SLIT-2, SLIT homolog 2 99.6 1.8E-15 6.1E-20 145.8 15.4 152 499-656 14-166 (220)
112 2xot_A Amphoterin-induced prot 99.6 9.2E-16 3.2E-20 160.0 14.3 128 7-140 21-150 (361)
113 1xeu_A Internalin C; cellular 99.6 3E-16 1E-20 155.7 9.6 168 27-233 18-185 (263)
114 3e6j_A Variable lymphocyte rec 99.6 4.2E-15 1.4E-19 144.2 16.5 137 544-684 40-176 (229)
115 2v70_A SLIT-2, SLIT homolog 2 99.6 3.1E-15 1.1E-19 144.1 14.7 148 7-160 14-164 (220)
116 2xot_A Amphoterin-induced prot 99.6 2.1E-15 7.1E-20 157.3 14.2 176 475-656 21-202 (361)
117 2ell_A Acidic leucine-rich nuc 99.6 3.9E-15 1.3E-19 137.0 11.9 135 3-142 23-163 (168)
118 1dce_A Protein (RAB geranylger 99.6 2.1E-17 7.3E-22 181.7 -6.6 197 25-226 346-566 (567)
119 2je0_A Acidic leucine-rich nuc 99.6 1E-14 3.5E-19 131.2 12.1 128 3-135 16-149 (149)
120 3sb4_A Hypothetical leucine ri 99.6 8.1E-15 2.8E-19 150.8 12.1 100 148-264 225-327 (329)
121 3sb4_A Hypothetical leucine ri 99.5 1.2E-14 4.1E-19 149.5 8.6 192 495-693 100-323 (329)
122 4fs7_A Uncharacterized protein 99.5 5.5E-13 1.9E-17 140.7 20.6 160 39-230 58-218 (394)
123 1dce_A Protein (RAB geranylger 99.5 5.8E-16 2E-20 170.3 -2.8 190 469-684 346-550 (567)
124 2ell_A Acidic leucine-rich nuc 99.5 5.6E-14 1.9E-18 129.2 10.1 138 519-686 23-165 (168)
125 1w8a_A SLIT protein; signaling 99.5 1.3E-13 4.6E-18 129.5 12.7 128 7-140 11-140 (192)
126 4fdw_A Leucine rich hypothetic 99.5 6.1E-13 2.1E-17 139.7 19.0 255 4-289 113-376 (401)
127 1w8a_A SLIT protein; signaling 99.5 1.7E-13 6E-18 128.8 12.3 129 523-657 11-140 (192)
128 2je0_A Acidic leucine-rich nuc 99.5 1.2E-13 4.2E-18 124.1 10.1 127 26-157 15-148 (149)
129 2wfh_A SLIT homolog 2 protein 99.5 3.1E-13 1.1E-17 127.0 13.1 127 7-140 13-140 (193)
130 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-13 5.7E-18 127.0 11.1 129 3-138 18-152 (176)
131 4fs7_A Uncharacterized protein 99.5 2.1E-12 7.2E-17 136.3 19.4 151 74-268 67-218 (394)
132 4b8c_D Glucose-repressible alc 99.4 1.6E-14 5.3E-19 164.0 2.6 184 74-271 220-404 (727)
133 4fdw_A Leucine rich hypothetic 99.4 1.9E-12 6.5E-17 136.0 18.3 238 5-271 136-383 (401)
134 2o6r_A Variable lymphocyte rec 99.4 1.4E-12 4.6E-17 121.0 13.7 129 6-140 9-138 (177)
135 4b8c_D Glucose-repressible alc 99.4 6.5E-14 2.2E-18 158.9 4.0 215 4-232 173-403 (727)
136 1a9n_A U2A', U2A'; complex (nu 99.4 4.1E-13 1.4E-17 124.4 8.7 132 22-160 13-151 (176)
137 2wfh_A SLIT homolog 2 protein 99.4 2.2E-12 7.7E-17 121.1 13.6 127 523-656 13-139 (193)
138 2o6r_A Variable lymphocyte rec 99.4 4.1E-12 1.4E-16 117.7 13.6 129 522-656 9-137 (177)
139 4gt6_A Cell surface protein; l 99.3 1.2E-10 4E-15 122.8 22.4 133 17-156 52-189 (394)
140 1ds9_A Outer arm dynein; leuci 99.3 6.6E-14 2.3E-18 132.5 -4.4 129 4-140 18-154 (198)
141 2r9u_A Variable lymphocyte rec 99.2 4E-11 1.4E-15 110.4 11.4 105 7-117 15-119 (174)
142 3g39_A Variable lymphocyte rec 99.2 4E-11 1.4E-15 110.0 11.3 105 6-116 11-115 (170)
143 3g39_A Variable lymphocyte rec 99.2 6.5E-11 2.2E-15 108.6 12.0 109 570-684 11-119 (170)
144 1ds9_A Outer arm dynein; leuci 99.2 4E-13 1.4E-17 127.1 -3.3 86 469-557 15-106 (198)
145 3un9_A NLR family member X1; l 99.2 2.4E-12 8.1E-17 133.9 1.5 169 496-664 72-260 (372)
146 3un9_A NLR family member X1; l 99.2 1.3E-12 4.6E-17 135.8 -0.9 165 519-683 71-255 (372)
147 4gt6_A Cell surface protein; l 99.2 1.3E-09 4.5E-14 114.7 22.1 160 40-230 51-215 (394)
148 2r9u_A Variable lymphocyte rec 99.2 1.2E-10 4E-15 107.2 11.2 106 571-682 15-120 (174)
149 4h09_A Hypothetical leucine ri 98.9 1E-07 3.4E-12 99.7 21.4 104 446-552 238-341 (379)
150 2ifg_A High affinity nerve gro 98.9 3.2E-09 1.1E-13 109.7 9.8 103 8-116 12-116 (347)
151 2ra8_A Uncharacterized protein 98.9 4.1E-09 1.4E-13 108.5 8.9 160 514-678 166-341 (362)
152 4h09_A Hypothetical leucine ri 98.8 4.7E-07 1.6E-11 94.6 23.6 166 493-667 191-356 (379)
153 2ifg_A High affinity nerve gro 98.8 1.6E-08 5.4E-13 104.5 10.5 104 32-140 12-117 (347)
154 2ra8_A Uncharacterized protein 98.7 1.7E-08 5.9E-13 103.8 6.9 160 490-654 166-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 1.4E-07 4.7E-12 87.5 7.7 121 20-140 28-165 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 1.8E-07 6E-12 86.7 5.0 115 2-116 34-164 (185)
157 3e4g_A ATP synthase subunit S, 98.2 3.8E-07 1.3E-11 82.2 3.0 82 569-653 62-149 (176)
158 3e4g_A ATP synthase subunit S, 98.2 8.5E-07 2.9E-11 79.9 4.8 88 27-116 60-153 (176)
159 3rw6_A Nuclear RNA export fact 98.1 5.3E-06 1.8E-10 80.7 7.0 101 9-111 148-259 (267)
160 3rw6_A Nuclear RNA export fact 98.0 3.4E-06 1.2E-10 82.1 4.8 108 24-133 137-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00019 6.6E-09 65.8 7.6 116 22-137 35-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00059 2E-08 62.6 6.2 114 3-116 40-170 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.0045 1.5E-07 52.9 6.8 57 598-656 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.1 0.0092 3.1E-07 50.9 6.5 56 8-65 12-68 (130)
165 2lz0_A Uncharacterized protein 78.1 1.8 6.1E-05 34.5 3.6 47 14-61 6-52 (100)
166 2lz0_A Uncharacterized protein 68.2 3.7 0.00013 32.6 3.3 49 37-88 5-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7e-59 Score=535.80 Aligned_cols=598 Identities=28% Similarity=0.373 Sum_probs=483.1
Q ss_pred CCccEEEcccccccCc---cchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCC
Q 037679 4 NKLSTLYLQHNQLTGH---IPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSL 80 (693)
Q Consensus 4 ~~l~~L~ls~~~l~~~---~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L 80 (693)
.+++.|+++++.+.+. ++.+|..+++|+.++++.+.+. ..+..|.++++|++|+|++|.+.+.++....++++++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence 4688999999999987 8899999999999999999875 35678999999999999999998877762128999999
Q ss_pred CEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchh-hh---hhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeC
Q 037679 81 TALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFP-YF---LHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDL 156 (693)
Q Consensus 81 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~---l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l 156 (693)
++|++++|.+....+..+..++++|++|++++|.++..+ .. ++++++|++|++++|.++. ......+++|++|++
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~l~~L~~L~L 207 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG-DVDVSRCVNLEFLDV 207 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEES-CCBCTTCTTCCEEEC
T ss_pred CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccc-cCCcccCCcCCEEEC
Confidence 999999999887777665348999999999999998544 33 7899999999999999987 444578999999999
Q ss_pred CCCCCCCCCC-CCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCc
Q 037679 157 GFNKLQGPLP-VPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGR 235 (693)
Q Consensus 157 ~~n~~~~~~~-~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~ 235 (693)
++|.+.+..+ +..+++|++|++++|.+++..+..+..++ +|+.|++++|.+....|.. .+++|++|++++|+++
T Consensus 208 s~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~-- 282 (768)
T 3rgz_A 208 SSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT-ELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT-- 282 (768)
T ss_dssp CSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCS-SCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEE--
T ss_pred cCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCC-CCCEEECCCCcccCccCcc--ccCCCCEEECcCCccC--
Confidence 9999987544 46899999999999999999999999999 9999999999998776654 7899999999999874
Q ss_pred eeeecccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccc
Q 037679 236 ALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYAD 315 (693)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (693)
+.++... +..+++|+.|++++|++++.+|.. +..++.|+.++...-.....
T Consensus 283 ----------~~ip~~~-~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~----------------- 333 (768)
T 3rgz_A 283 ----------GEIPDFL-SGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGE----------------- 333 (768)
T ss_dssp ----------ESCCCCS-CTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEE-----------------
T ss_pred ----------CccCHHH-HhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCc-----------------
Confidence 2334333 133588999999999998766654 66677776665543221100
Q ss_pred cceeecCCCchhhhhhhhhhhhheeecCCcccccCChhhhcCC-CCCeeeCccccccCCCCCCCCcccccccCcccCCCC
Q 037679 316 YSLTMSNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLK-GLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPG 394 (693)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 394 (693)
...+.+..++.+++|++++|.+.+.+|.++..++ +|++|++++|.+.+ .+|.....
T Consensus 334 ---------ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~-~~~~~~~~------------- 390 (768)
T 3rgz_A 334 ---------LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG-PILPNLCQ------------- 390 (768)
T ss_dssp ---------CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE-ECCTTTTC-------------
T ss_pred ---------CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC-CcChhhhh-------------
Confidence 0112234456788888888888888888888776 88888888888764 33321100
Q ss_pred CcCCCccccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcccccccccC
Q 037679 395 LCGEPLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLL 474 (693)
Q Consensus 395 l~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 474 (693)
.....++.+.+++|.+.+.+|..+..+++|++|++++|......+..+..+++|
T Consensus 391 --------------------------~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 444 (768)
T 3rgz_A 391 --------------------------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444 (768)
T ss_dssp --------------------------STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred --------------------------cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCC
Confidence 001246778888888888888888888888888888884333444557888888
Q ss_pred CeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCc
Q 037679 475 EDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSF 554 (693)
Q Consensus 475 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 554 (693)
++|++++|.+.+..+..+..+++|++|++++|.++...|..+..+++|++|++++|++.+..|..++.+++|+.|++++|
T Consensus 445 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence 88888888888777788888888888888888887777878888888888888888887788888888888888888888
Q ss_pred cccccchhccCCCCCCcEEecccCCCCccccchhH---------------------------------------------
Q 037679 555 NFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLS--------------------------------------------- 589 (693)
Q Consensus 555 ~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~--------------------------------------------- 589 (693)
++.+..+..+..+++|+.|++++|.+.+..|..+.
T Consensus 525 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 88877777788888888888888876533222110
Q ss_pred ----------------------hhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccE
Q 037679 590 ----------------------WLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSS 647 (693)
Q Consensus 590 ----------------------~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 647 (693)
.+..+++|+.|++++|++++.+|..++++++|+.|++++|.+++.+|..+.++++|+.
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence 1334678999999999999999999999999999999999999999999999999999
Q ss_pred EeccCccCCCCcchhhcCCCCCCeEEccCCcccCCccCc
Q 037679 648 LLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVPSS 686 (693)
Q Consensus 648 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 686 (693)
|++++|++++.+|..++.+++|++||+++|++++.+|+.
T Consensus 685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 999999999999999999999999999999999999964
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4e-56 Score=512.85 Aligned_cols=593 Identities=27% Similarity=0.373 Sum_probs=416.4
Q ss_pred CCCCccEEEcccccccCccch--hhccCCCCcEEEccCCcCCCCCCccc-cCCCCCcEEECCCCcCCCcccHH-HHhhcC
Q 037679 2 NLNKLSTLYLQHNQLTGHIPV--EIRKLTQLQIVRLAENQLEGSVPSSI-FELRNLQALDLSNNNLSGTVDLN-MLLLNL 77 (693)
Q Consensus 2 ~~~~l~~L~ls~~~l~~~~~~--~~~~~~~L~~L~ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~~~~-~~l~~l 77 (693)
++++|++|++++|.+++.+|. .|..+++|++|++++|.+.+..+..+ .++++|++|++++|.+.+..+.. ..+.++
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred cCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 567777777777777766666 77777777777777777765555544 67777777777777776555432 114667
Q ss_pred CCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCC-CccCCCCCcEEeC
Q 037679 78 KSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDL-LVLPWSKMNTLDL 156 (693)
Q Consensus 78 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~l 156 (693)
++|++|++++|.+....+. . .+++|++|++++|.++..++.++++++|++|++++|.++.... ....+++|++|++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~--~-~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDV--S-RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp TTCCEEECCSSEEESCCBC--T-TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred CCCCEEECCCCcccccCCc--c-cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 7777777777776654443 2 7777778888777777544447777888888888877775322 2247777888888
Q ss_pred CCCCCCCCCCCCCCCCCCEEeCCCCCCCCCcccccccc-cccccEEEcccccccccccccccCCCCccEEEccCCcCCCc
Q 037679 157 GFNKLQGPLPVPSLNGLQALDLSYNNLSGMLPECLGNF-SVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGR 235 (693)
Q Consensus 157 ~~n~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~-~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~ 235 (693)
++|.+.+..+...+++|++|++++|.+.+..|..+... + +|++|++++|.+....|..|..+++|++|++++|+++
T Consensus 255 s~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-- 331 (768)
T 3rgz_A 255 SSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACD-TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS-- 331 (768)
T ss_dssp CSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCT-TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE--
T ss_pred CCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcC-cCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc--
Confidence 88877766666677778888888887776667666665 6 7888888888777777777777888888888777653
Q ss_pred eeeecccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccc
Q 037679 236 ALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYAD 315 (693)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (693)
+.++.. .+..+++|+.|++++|++++.+|..+....+.++.++...-.....
T Consensus 332 ----------~~ip~~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~----------------- 383 (768)
T 3rgz_A 332 ----------GELPMD-TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP----------------- 383 (768)
T ss_dssp ----------EECCHH-HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE-----------------
T ss_pred ----------CcCCHH-HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC-----------------
Confidence 112211 1356777888888888777666665322222444444332111100
Q ss_pred cceeecCCCchhhhhh--hhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCC
Q 037679 316 YSLTMSNKGTEIEYLK--LSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNP 393 (693)
Q Consensus 316 ~~~~~~~~~~~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~ 393 (693)
.+..+. ....+++|++++|.+.+..|.+++.+++|++|++++|.+++ .+|.. +.+
T Consensus 384 ----------~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~----------l~~-- 440 (768)
T 3rgz_A 384 ----------ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-TIPSS----------LGS-- 440 (768)
T ss_dssp ----------CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES-CCCGG----------GGG--
T ss_pred ----------cChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC-cccHH----------Hhc--
Confidence 000111 13457777777777777777777777778888877777663 22221 111
Q ss_pred CCcCCCccccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCccccccccc
Q 037679 394 GLCGEPLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSL 473 (693)
Q Consensus 394 ~l~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 473 (693)
...++.+.+++|.+.+.+|..+..+++|++|++.+|......+..+..+++
T Consensus 441 -----------------------------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 441 -----------------------------LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491 (768)
T ss_dssp -----------------------------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred -----------------------------CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence 124567777777777777777777888888888877433333445777788
Q ss_pred CCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccE-----
Q 037679 474 LEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKA----- 548 (693)
Q Consensus 474 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~----- 548 (693)
|++|++++|.+.+..+..+..+++|++|++++|.+....|..+..+++|++|++++|.+.+..|..+..+..+..
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~ 571 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence 888888888877777777777888888888888777777777777888888888888777666655544332222
Q ss_pred -----------------------------------------EEecCccccccchhccCCCCCCcEEecccCCCCccccch
Q 037679 549 -----------------------------------------LEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSS 587 (693)
Q Consensus 549 -----------------------------------------L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~ 587 (693)
++++.+.+.+..+..+..+++|+.|++++|.+++..|..
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 651 (768)
T 3rgz_A 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651 (768)
T ss_dssp SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH
Confidence 222223444444556777899999999999998776653
Q ss_pred hHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhcCCC
Q 037679 588 LSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLT 667 (693)
Q Consensus 588 ~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 667 (693)
+..+++|+.|++++|.+++.+|..++++++|+.|++++|++++.+|..+.++++|+.|++++|++++.+|.. .++.
T Consensus 652 ---l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~ 727 (768)
T 3rgz_A 652 ---IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFE 727 (768)
T ss_dssp ---GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGG
T ss_pred ---HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhc
Confidence 578899999999999999999999999999999999999999999999999999999999999999999976 5666
Q ss_pred CCCeEEccCCcccCCcc
Q 037679 668 QLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 668 ~L~~L~l~~n~~~~~~p 684 (693)
++....+.+|+-.+-.|
T Consensus 728 ~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 728 TFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp GSCGGGGCSCTEEESTT
T ss_pred cCCHHHhcCCchhcCCC
Confidence 77777788887544334
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.6e-52 Score=472.12 Aligned_cols=578 Identities=21% Similarity=0.216 Sum_probs=363.4
Q ss_pred CccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEE
Q 037679 5 KLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALV 84 (693)
Q Consensus 5 ~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~ 84 (693)
++++|++++|.++++.+.+|.++++|++|++++|.++++.+.+|.++++|++|++++|++....+.. |.++++|++|+
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--~~~l~~L~~L~ 103 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT--FAFCTNLTELH 103 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT--TTTCTTCSEEE
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhh--hccCCCCCEEE
Confidence 4555555555555555555555555555555555555555555555555555555555555443333 55555555555
Q ss_pred CCCCcCCchhhhhhhcCCCCCcEEeccCCCCCch-hhhhhcCCCccEEEcCCCCCCCCCCCc---cCCCCCcEEeCCCCC
Q 037679 85 LSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEF-PYFLHNQDELVSLDLSSNKIAGQDLLV---LPWSKMNTLDLGFNK 160 (693)
Q Consensus 85 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~---~~~~~L~~L~l~~n~ 160 (693)
+++|.+....+..|. ++++|++|++++|.++.. +..++++++|++|++++|.++...... ..+++|++|++++|.
T Consensus 104 L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCCCSCTTT-TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCccChhHcc-ccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 555555554444444 555555555555555533 234455555555555555555432221 233555555555555
Q ss_pred CCCCCCC--CCCCCCCEEeCCCCCCCCCcccccc---cccccccEEEcccccccccccccccCCCC--ccEEEccCCcCC
Q 037679 161 LQGPLPV--PSLNGLQALDLSYNNLSGMLPECLG---NFSVELSALKLQANNFYRIVPQTFMNGTN--LMMIDFSNNSLQ 233 (693)
Q Consensus 161 ~~~~~~~--~~l~~L~~L~L~~~~i~~~~~~~~~---~~~~~L~~L~L~~~~i~~~~~~~~~~~~~--L~~L~l~~n~l~ 233 (693)
+.+..+. ..+++|+.++++++.+.......+. ... +|+.|++++|.+....+..|..++. |++|++++|+++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~-~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT-SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTS-CCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhc-cccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 5433222 1333444444433332211100000 113 5777777777777777777766644 888888877764
Q ss_pred CceeeecccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccch---hcccccccccccee
Q 037679 234 GRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYL---QVKLLPYDVLGFTY 310 (693)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~---~~~~~~~~~~~~~~ 310 (693)
. .. +..+..+++|+.|++++|++.+..+ ..+..++.++.++....... ....++.
T Consensus 262 ~------------~~--~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~------- 319 (680)
T 1ziw_A 262 V------------VG--NDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPK------- 319 (680)
T ss_dssp E------------EC--TTTTTTCTTCCEEECCSCCBSEECT-TTTTTCTTCCEEECTTCBCCC------CCE-------
T ss_pred c------------cC--cccccCcccccEeeCCCCccCccCh-hhhcCCCCccEEeccchhhhcccccccccc-------
Confidence 1 11 2233567778888888877774333 34566666655554321000 0000000
Q ss_pred ccccccceeecCCCchhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCccc
Q 037679 311 YGYADYSLTMSNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFA 390 (693)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~ 390 (693)
-.-..+..++.++++++++|.+.+..+.++..+++|++|++++|.+....++.. .|.
T Consensus 320 --------------i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~---------~f~ 376 (680)
T 1ziw_A 320 --------------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE---------TFV 376 (680)
T ss_dssp --------------ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTT---------TTG
T ss_pred --------------cChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchh---------hhc
Confidence 000012335678888888888888778888888899999988887542111110 000
Q ss_pred CCCCCcCCCccccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcccccc
Q 037679 391 GNPGLCGEPLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQK 470 (693)
Q Consensus 391 ~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 470 (693)
....++|+.|++++|.........|..
T Consensus 377 -----------------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 377 -----------------------------------------------------SLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp -----------------------------------------------------GGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred -----------------------------------------------------ccccCcCceEECCCCCCCeEChhhhhC
Confidence 002357788888887544444456777
Q ss_pred cccCCeeEecccccCCCc-hhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCC--CCccccccCCcccc
Q 037679 471 SSLLEDLRLSYTRFSGKI-PDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFL--DELPTSIGNLASLK 547 (693)
Q Consensus 471 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~~~~~l~~L~ 547 (693)
+++|+.|++++|.+.+.. ...|.++++|++|++++|.+....+..|..+++|++|++++|.+. +..|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 888888888888876433 367778888888888888877777777888888888888888764 45567778888888
Q ss_pred EEEecCccccccchhccCCCCCCcEEecccCCCCccccchh-----HhhhcCCCCcEEEccCCCCCCcccccccCCCCCC
Q 037679 548 ALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSL-----SWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLT 622 (693)
Q Consensus 548 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-----~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 622 (693)
.|++++|.+....+..+..+++|++|++++|.+.......+ ..+..+++|++|++++|.++...+..|.++++|+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 88888888887777778888888888888888775433211 1256788899999999988855445688889999
Q ss_pred EEEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhc-CCCCCCeEEccCCcccCCcc
Q 037679 623 ALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEIS-NLTQLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 623 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p 684 (693)
+|++++|.+++..+..|.++++|+.|++++|++++..+..+. .+++|++|++++||+.+.++
T Consensus 564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 999999988866666778888999999999998877777676 78889999999999887776
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.5e-50 Score=458.28 Aligned_cols=573 Identities=21% Similarity=0.236 Sum_probs=454.5
Q ss_pred ccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 6 l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
-+.++.++++++ .+|..+. +++++|++++|.++++.+.+|.++++|++|++++|.+.+..+.. |.++++|++|++
T Consensus 6 ~~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L 80 (680)
T 1ziw_A 6 HEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL--CQKLPMLKVLNL 80 (680)
T ss_dssp SSEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTH--HHHCTTCCEEEC
T ss_pred CCeeECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHH--HhcccCcCEEEC
Confidence 367899999998 5666664 79999999999999888889999999999999999999888877 999999999999
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCchh-hhhhcCCCccEEEcCCCCCCCCCCCc-cCCCCCcEEeCCCCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFP-YFLHNQDELVSLDLSSNKIAGQDLLV-LPWSKMNTLDLGFNKLQG 163 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~ 163 (693)
++|.++...+..|. ++++|++|++++|+++.++ .+++++++|++|++++|.++...... .++++|++|++++|.+++
T Consensus 81 ~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 81 QHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred CCCccCccChhhhc-cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 99999987777787 9999999999999999876 57899999999999999998865544 378899999999998875
Q ss_pred CCCC----CCCCCCCEEeCCCCCCCCCcccccccccccccEEEccccccccccccccc---CCCCccEEEccCCcCCCce
Q 037679 164 PLPV----PSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFM---NGTNLMMIDFSNNSLQGRA 236 (693)
Q Consensus 164 ~~~~----~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~---~~~~L~~L~l~~n~l~~~~ 236 (693)
..+. ..+++|++|++++|.+.+..+..+..+. +|+.|++.++.+.......+. ..++|++|++++|++++
T Consensus 160 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~-- 236 (680)
T 1ziw_A 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG-RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-- 236 (680)
T ss_dssp BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSS-EECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE--
T ss_pred cCHHHhhccccccccEEECCCCcccccChhhhhhhh-hhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc--
Confidence 4332 2567899999999988888888888888 889998888876533222211 34788888888887752
Q ss_pred eeecccccCCCCCCCccCCCC--CCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceecccc
Q 037679 237 LILKFNNFHGEIEEPQTGFEF--PKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYA 314 (693)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (693)
..+..+ ..+ ++|+.|++++|++++..+. .+..
T Consensus 237 ----------~~~~~~--~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~--------------------------------- 270 (680)
T 1ziw_A 237 ----------TSNTTF--LGLKWTNLTMLDLSYNNLNVVGND-SFAW--------------------------------- 270 (680)
T ss_dssp ----------ECTTTT--GGGGGSCCCEEECTTSCCCEECTT-TTTT---------------------------------
T ss_pred ----------cChhHh--hccCcCCCCEEECCCCCcCccCcc-cccC---------------------------------
Confidence 222232 334 4499999999988743332 2222
Q ss_pred ccceeecCCCchhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCC
Q 037679 315 DYSLTMSNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPG 394 (693)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 394 (693)
++.++++++++|.+.+..+.++..+++|++|++++|.... .++ ...+..+....|.++
T Consensus 271 ------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~-~~~lp~i~~~~~~~l-- 328 (680)
T 1ziw_A 271 ------------------LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ-SIS-LASLPKIDDFSFQWL-- 328 (680)
T ss_dssp ------------------CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC--------CCEECTTTTTTC--
T ss_pred ------------------cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc-ccc-cccccccChhhcccC--
Confidence 3456888899998888888889999999999998765432 111 011122222233333
Q ss_pred CcCCCccccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCc--cccccc-
Q 037679 395 LCGEPLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYL--PQFQKS- 471 (693)
Q Consensus 395 l~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~- 471 (693)
..++.+.+++|.+.+..+..+.++++|++|++++|....... ..|..+
T Consensus 329 -----------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~ 379 (680)
T 1ziw_A 329 -----------------------------KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379 (680)
T ss_dssp -----------------------------TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT
T ss_pred -----------------------------CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccc
Confidence 356788889999888878888899999999999985321111 223333
Q ss_pred -ccCCeeEecccccCCCchhhhhcCCCCcEEeccCCccccccc-ccccccCCCcEEEeeCCcCCCCccccccCCccccEE
Q 037679 472 -SLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIP-SSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKAL 549 (693)
Q Consensus 472 -~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 549 (693)
+.|+.|++++|.+.+..+..|..+++|++|++++|.+....+ ..+.++++|++|++++|++.+..+..+..+++|+.|
T Consensus 380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence 589999999999998888899999999999999999876554 678999999999999999988888889999999999
Q ss_pred EecCcccc--ccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCccc--------ccccCCC
Q 037679 550 EISSFNFS--STLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIP--------FGISNLT 619 (693)
Q Consensus 550 ~l~~~~~~--~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~--------~~l~~l~ 619 (693)
++++|.+. +..+..+..+++|+.|++++|.+....+.. +..+++|++|++++|++++..+ ..+.+++
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~ 536 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM---LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT
T ss_pred hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh---hccccccCEEeCCCCCccccchhhccCCcchhhcCCC
Confidence 99999876 346678899999999999999998766543 5688999999999999975422 2378899
Q ss_pred CCCEEEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCccCcc
Q 037679 620 QLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVPSSI 687 (693)
Q Consensus 620 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~ 687 (693)
+|++|++++|.++...+..|.++++|+.|++++|++.+..+..|..+++|++|++++|.+++..|+.+
T Consensus 537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 99999999999995555678999999999999999997666678999999999999999996555543
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.6e-50 Score=450.32 Aligned_cols=539 Identities=21% Similarity=0.250 Sum_probs=387.8
Q ss_pred ccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 6 l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
-++++.++.+++ .+|..+. +++++|++++|.++++.+.+|.++++|++|++++|++.+..+.. |.++++|++|++
T Consensus 14 ~~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~L 88 (606)
T 3t6q_A 14 NKTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT--FQSQHRLDTLVL 88 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTT--TTTCTTCCEEEC
T ss_pred CceEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhh--ccCccccCeeeC
Confidence 357788888887 5666664 47899999999999888889999999999999999988777766 889999999999
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCch-hhhhhcCCCccEEEcCCCCCCCCCCCc-cCCCCCcEEeCCCCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEF-PYFLHNQDELVSLDLSSNKIAGQDLLV-LPWSKMNTLDLGFNKLQG 163 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~ 163 (693)
++|.+....+..+. ++++|++|++++|+++.+ +..++++++|++|++++|.++.+.... .++++|+
T Consensus 89 s~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----------- 156 (606)
T 3t6q_A 89 TANPLIFMAETALS-GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK----------- 156 (606)
T ss_dssp TTCCCSEECTTTTS-SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCC-----------
T ss_pred CCCcccccChhhhc-ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccC-----------
Confidence 99999888887887 889999999999988876 457888888888888888887743322 2344444
Q ss_pred CCCCCCCCCCCEEeCCCCCCCCCccccccccccccc--EEEcccccccccccccccCCCCccEEEccCCcCCCceeeecc
Q 037679 164 PLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELS--ALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKF 241 (693)
Q Consensus 164 ~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~--~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~ 241 (693)
+|++++|.+.+..+..++.+. +|+ .|++++|.+..+.+..|.. .+|++|++++|...
T Consensus 157 -----------~L~L~~n~l~~~~~~~~~~l~-~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~-------- 215 (606)
T 3t6q_A 157 -----------VLDFQNNAIHYLSKEDMSSLQ-QATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNL-------- 215 (606)
T ss_dssp -----------EEECCSSCCCEECHHHHHTTT-TCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCH--------
T ss_pred -----------EEEcccCcccccChhhhhhhc-ccceeEEecCCCccCccChhHhhh-ccccccccCCchhH--------
Confidence 445555544444444455555 455 4555555555544444432 34555555544310
Q ss_pred cccCCCCCCCccCCCCCC--ceEEecCCCccc--CCCCCcccccchhhhhhhcccccchhccccccccccceeccccccc
Q 037679 242 NNFHGEIEEPQTGFEFPK--LRIIDLSHNRFT--GNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYS 317 (693)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~--~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (693)
+. .+..+.+ ++.+.+....-. ..++...+..+.
T Consensus 216 -------~~--~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~---------------------------------- 252 (606)
T 3t6q_A 216 -------LV--IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC---------------------------------- 252 (606)
T ss_dssp -------HH--HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG----------------------------------
T ss_pred -------HH--HhhhccccchhheechhhccccccccChhHhchhh----------------------------------
Confidence 00 0011111 112222111000 001111111000
Q ss_pred eeecCCCchhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCCcC
Q 037679 318 LTMSNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLCG 397 (693)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~~ 397 (693)
...++.+++++|.+.+..+..++.+++|++|++++|.++ .+|.. +.++
T Consensus 253 ---------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~----------l~~l----- 300 (606)
T 3t6q_A 253 ---------------EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--ELPSG----------LVGL----- 300 (606)
T ss_dssp ---------------GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS--CCCSS----------CCSC-----
T ss_pred ---------------cCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC--CCChh----------hccc-----
Confidence 012444555555554444444555555555555555544 22221 0111
Q ss_pred CCccccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCC-cccccccccCCe
Q 037679 398 EPLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGY-LPQFQKSSLLED 476 (693)
Q Consensus 398 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~ 476 (693)
..++.+.+++|.+.+..|..+..+++|++|++.+|...... ...+..+++|++
T Consensus 301 --------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 301 --------------------------STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp --------------------------TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred --------------------------ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 12344555555555555667778999999999999544222 334889999999
Q ss_pred eEecccccCCCc--hhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccc-cccCCccccEEEecC
Q 037679 477 LRLSYTRFSGKI--PDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPT-SIGNLASLKALEISS 553 (693)
Q Consensus 477 L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~l~~ 553 (693)
|++++|.+.+.. +..+..+++|++|++++|.+....+..+..+++|++|++++|++.+..+. .+..+++|++|++++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 999999988655 67789999999999999998888888899999999999999998766554 488899999999999
Q ss_pred ccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCC
Q 037679 554 FNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTG 633 (693)
Q Consensus 554 ~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 633 (693)
|.+....+..+..+++|++|++++|.+.+........+..+++|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 99988888889999999999999999876433333457789999999999999998888899999999999999999998
Q ss_pred CccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCcc
Q 037679 634 PIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 634 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 684 (693)
..|..+.++++| .|++++|++++..|..+..+++|++|++++|++.+.++
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 899999999999 99999999998888889999999999999999998776
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-47 Score=430.12 Aligned_cols=531 Identities=20% Similarity=0.227 Sum_probs=366.1
Q ss_pred cEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECC
Q 037679 7 STLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLS 86 (693)
Q Consensus 7 ~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~ 86 (693)
++++.++++++ .+|..+. +++++|++++|.++++.+.+|.++++|++|++++|.+.+..+.. |.++++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~--~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA--WHGLHHLSNLILT 88 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT--TTTCTTCCEEECT
T ss_pred CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHH--hhchhhcCEeECC
Confidence 56788888887 4555554 78888888888888777778888888888888888887766666 7888888888888
Q ss_pred CCcCCchhhhhhhcCCCCCcEEeccCCCCCchh-hhhhcCCCccEEEcCCCCCCCCCC--CccCCCCCcEEeCCCCCCCC
Q 037679 87 SNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFP-YFLHNQDELVSLDLSSNKIAGQDL--LVLPWSKMNTLDLGFNKLQG 163 (693)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~ 163 (693)
+|.++...+..|. ++++|++|++++|+++.++ ..++++++|++|++++|.++.... ...++++|++|++++|.
T Consensus 89 ~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~--- 164 (606)
T 3vq2_A 89 GNPIQSFSPGSFS-GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY--- 164 (606)
T ss_dssp TCCCCCCCTTSST-TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC---
T ss_pred CCcccccChhhcC-CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc---
Confidence 8888877777777 7888888888888887665 467788888888888887775322 22344555555555554
Q ss_pred CCCCCCCCCCCEEeCCCCCCCCCccccccccccccc----EEEcccccccccccccccCCCCccEEEccCCcCCCceeee
Q 037679 164 PLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELS----ALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALIL 239 (693)
Q Consensus 164 ~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~----~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l 239 (693)
+.+..+..++.+. +|+ .|++++|.+..+.+..+... +|++|++++|.+++.
T Consensus 165 -------------------l~~~~~~~~~~l~-~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~---- 219 (606)
T 3vq2_A 165 -------------------IQTITVNDLQFLR-ENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSN---- 219 (606)
T ss_dssp -------------------CCEECTTTTHHHH-HCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHH----
T ss_pred -------------------ceecChhhhhhhh-ccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchh----
Confidence 4444444444443 332 45555555554444444333 455555555543210
Q ss_pred cccccCCCCCCCccCCCCCCceEEecCCCcccCC-----CCCcccccchhhhhhhcccccchhccccccccccceecccc
Q 037679 240 KFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGN-----LPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYA 314 (693)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (693)
..+ ..+.+++.++.+++..+.+.+. .+...+..+..+
T Consensus 220 -------~~~--~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l----------------------------- 261 (606)
T 3vq2_A 220 -------IMK--TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV----------------------------- 261 (606)
T ss_dssp -------HHH--HHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-----------------------------
T ss_pred -------HHH--HHhccccccccccccccccccCCcccccChHHhhhhhhc-----------------------------
Confidence 011 1113344444444433322211 011111111100
Q ss_pred ccceeecCCCchhhhhhhhhhhhheee-cCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCC
Q 037679 315 DYSLTMSNKGTEIEYLKLSNLIAAIII-SDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNP 393 (693)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~l~l-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~ 393 (693)
.++.+++ ..+.+.+..+. +..+++|++|++++|.+.. +|. +.+
T Consensus 262 --------------------~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~--l~~-----------l~~-- 305 (606)
T 3vq2_A 262 --------------------TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY--LED-----------VPK-- 305 (606)
T ss_dssp --------------------EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC--CCC-----------CCT--
T ss_pred --------------------cHhheeccccccccccccc-cccCCCCCEEEecCccchh--hhh-----------ccc--
Confidence 1223333 23333333333 4455555555555555431 110 000
Q ss_pred CCcCCCccccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCccccccccc
Q 037679 394 GLCGEPLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSL 473 (693)
Q Consensus 394 ~l~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 473 (693)
...++.+.+.+|.+ +.+| .+ .+++|++|++.+|..... ..+..+++
T Consensus 306 -----------------------------~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~--~~~~~l~~ 351 (606)
T 3vq2_A 306 -----------------------------HFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS--FKKVALPS 351 (606)
T ss_dssp -----------------------------TCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE--CCCCCCTT
T ss_pred -----------------------------cccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc--hhhccCCC
Confidence 01234455555555 4555 34 789999999999954332 26778899
Q ss_pred CCeeEecccccCCCc--hhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCcc-ccccCCccccEEE
Q 037679 474 LEDLRLSYTRFSGKI--PDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELP-TSIGNLASLKALE 550 (693)
Q Consensus 474 L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~ 550 (693)
|++|++++|.+++.. +..+..+++|++|++++|.+.. .+..+..+++|++|++++|.+.+..+ ..+..+++|+.|+
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence 999999999987653 6788899999999999998774 55778899999999999999877766 5788899999999
Q ss_pred ecCccccccchhccCCCCCCcEEecccCCCCcc-ccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCC
Q 037679 551 ISSFNFSSTLQASLGNLTQLDSLTISNSNFSRL-MSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYN 629 (693)
Q Consensus 551 l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n 629 (693)
+++|.+.+..+..+..+++|++|++++|.+.+. .+. .+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN---VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH---hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 999999888888899999999999999988762 332 2568899999999999999888888999999999999999
Q ss_pred ccCCCccccccCcCcccEEeccCccCCCCcchhhcCCC-CCCeEEccCCcccCCcc
Q 037679 630 QLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLT-QLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 630 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p 684 (693)
.+++..|..+.++++|+.|++++|++. .+|..+..++ +|++|++++|++.+..|
T Consensus 508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999888999999999999999999998 6887788887 69999999999987776
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.9e-47 Score=428.17 Aligned_cols=511 Identities=20% Similarity=0.195 Sum_probs=407.7
Q ss_pred CCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEE
Q 037679 4 NKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTAL 83 (693)
Q Consensus 4 ~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L 83 (693)
+++++|++++|.++++.+.+|.++++|++|++++|.+.++.|.+|.++++|++|++++|++.+..+.. |.++++|++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA--LSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT--TSSCTTCCEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh--hcccccccEe
Confidence 46899999999999888999999999999999999999889999999999999999999999887777 9999999999
Q ss_pred ECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchh-hhhhcCCCccEEEcCCCCCCCCCCCc-cCCCCCc--EEeCCCC
Q 037679 84 VLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFP-YFLHNQDELVSLDLSSNKIAGQDLLV-LPWSKMN--TLDLGFN 159 (693)
Q Consensus 84 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~L~--~L~l~~n 159 (693)
++++|.++...+..+. ++++|++|++++|+++.++ ..+..+++|++|++++|.++.+.... ..+++|+ .|++++|
T Consensus 111 ~L~~n~i~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp ECTTSCCSCGGGSCCT-TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eccccCcccCCcchhc-cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 9999999988777887 9999999999999999762 33445999999999999999754443 3888888 8999999
Q ss_pred CCCCCCCCC-CCCCCCEEeCCCCCCCCCcccccccccccccEEEccccc-----ccccccccccCCC--CccEEEccCCc
Q 037679 160 KLQGPLPVP-SLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANN-----FYRIVPQTFMNGT--NLMMIDFSNNS 231 (693)
Q Consensus 160 ~~~~~~~~~-~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~-----i~~~~~~~~~~~~--~L~~L~l~~n~ 231 (693)
.+.+..+.. ....|++|++++|. ..+..+..+. .++...+.... ...+.+..|..+. +|++|++++|.
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~-~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~ 265 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLK-NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTT-TCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC
T ss_pred ccCccChhHhhhccccccccCCch---hHHHHhhhcc-ccchhheechhhccccccccChhHhchhhcCceeEEEeecCc
Confidence 998654433 56789999999986 2334444444 33333332221 1223333444333 67888888887
Q ss_pred CCCceeeecccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceec
Q 037679 232 LQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYY 311 (693)
Q Consensus 232 l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 311 (693)
++. .....+..+++|+.|++++|+++ .+|.. +..
T Consensus 266 l~~--------------~~~~~~~~l~~L~~L~l~~n~l~-~lp~~-l~~------------------------------ 299 (606)
T 3t6q_A 266 FFN--------------ISSNTFHCFSGLQELDLTATHLS-ELPSG-LVG------------------------------ 299 (606)
T ss_dssp CSS--------------CCTTTTTTCTTCSEEECTTSCCS-CCCSS-CCS------------------------------
T ss_pred cCc--------------cCHHHhccccCCCEEeccCCccC-CCChh-hcc------------------------------
Confidence 642 11223466788888888888776 55543 111
Q ss_pred cccccceeecCCCchhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccC
Q 037679 312 GYADYSLTMSNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAG 391 (693)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~ 391 (693)
++.+++|++++|.+.+..+..++.+++|++|++++|.+.. .+|.
T Consensus 300 ---------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~-------------- 343 (606)
T 3t6q_A 300 ---------------------LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL-ELGT-------------- 343 (606)
T ss_dssp ---------------------CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC-BCCS--------------
T ss_pred ---------------------cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc-ccch--------------
Confidence 2446777777887777777788889999999998887653 1111
Q ss_pred CCCCcCCCccccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCC--ccccc
Q 037679 392 NPGLCGEPLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGY--LPQFQ 469 (693)
Q Consensus 392 ~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~ 469 (693)
..+..+++|++|++++|...... ...+.
T Consensus 344 --------------------------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 373 (606)
T 3t6q_A 344 --------------------------------------------------GCLENLENLRELDLSHDDIETSDCCNLQLR 373 (606)
T ss_dssp --------------------------------------------------STTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred --------------------------------------------------hhhhccCcCCEEECCCCccccccCcchhcc
Confidence 22556888999999988543332 34588
Q ss_pred ccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccc-cccccCCCcEEEeeCCcCCCCccccccCCccccE
Q 037679 470 KSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPS-SLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKA 548 (693)
Q Consensus 470 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 548 (693)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+....+. .+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 899999999999998877788899999999999999988766544 4888999999999999998888888999999999
Q ss_pred EEecCcccccc---chhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEE
Q 037679 549 LEISSFNFSST---LQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALD 625 (693)
Q Consensus 549 L~l~~~~~~~~---~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 625 (693)
|++++|++.+. ....+..+++|+.|++++|.+....+.. +..+++|++|++++|++++..|..+.++++| .|+
T Consensus 454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA---FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT---TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh---hccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 99999998763 2256888999999999999998775543 5688999999999999998889999999999 999
Q ss_pred ccCCccCCCccccccCcCcccEEeccCccCCC
Q 037679 626 LSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSG 657 (693)
Q Consensus 626 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 657 (693)
+++|.+++..|..+..+++|+.|++++|++..
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 99999998888888899999999999999984
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-45 Score=415.69 Aligned_cols=521 Identities=20% Similarity=0.200 Sum_probs=386.4
Q ss_pred CcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEEe
Q 037679 30 LQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVIG 109 (693)
Q Consensus 30 L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 109 (693)
-+.++.+++.++. .|..+. ++|++|++++|++.+..+.. |.++++|++|++++|.++...+..|. ++++|++|+
T Consensus 13 ~~~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~i~~~~~~-~l~~L~~L~ 86 (606)
T 3vq2_A 13 NITYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYS--FSNFSELQWLDLSRCEIETIEDKAWH-GLHHLSNLI 86 (606)
T ss_dssp TTEEECTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEE
T ss_pred CCceEccCCCccc-CCCCCC--CCcCEEECCCCCcCEeChhh--ccCCccCcEEeCCCCcccccCHHHhh-chhhcCEeE
Confidence 3567777777773 344443 67888888888877666655 77788888888888877777676666 777777777
Q ss_pred ccCCCCCch-hhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCCCC-Cc
Q 037679 110 FNSCNLSEF-PYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNLSG-ML 187 (693)
Q Consensus 110 l~~~~l~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i~~-~~ 187 (693)
+++|+++.+ |.+++++++|++|++++|.++.++. ..+..+++|++|++++|.+.+ ..
T Consensus 87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~---------------------~~~~~l~~L~~L~L~~n~l~~~~l 145 (606)
T 3vq2_A 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES---------------------FPIGQLITLKKLNVAHNFIHSCKL 145 (606)
T ss_dssp CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS---------------------SCCTTCTTCCEEECCSSCCCCCCC
T ss_pred CCCCcccccChhhcCCcccCCEEEccCCccccccc---------------------cccCCCCCCCEEeCCCCcccceec
Confidence 777777766 5667777777777777777765321 234467788888888888876 35
Q ss_pred ccccccccccccEEEcccccccccccccccCCCCcc----EEEccCCcCCCceeeecccccCCCCCCCccCCCCCCceEE
Q 037679 188 PECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLM----MIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRII 263 (693)
Q Consensus 188 ~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~----~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L 263 (693)
|..++.++ +|++|++++|.++.+.+..|..+++|+ +|++++|+++. ++.. . ....+|+.|
T Consensus 146 p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~-------------~~~~-~-~~~~~L~~L 209 (606)
T 3vq2_A 146 PAYFSNLT-NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-------------IQDQ-A-FQGIKLHEL 209 (606)
T ss_dssp CGGGGTCT-TCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE-------------ECTT-T-TTTCEEEEE
T ss_pred hHhHhhcC-CCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcce-------------eCcc-c-ccCceeeee
Confidence 88899999 999999999999999888888776665 89999998861 2222 1 223489999
Q ss_pred ecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceeecCCCchhhhhhhhhhhhheeecC
Q 037679 264 DLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKGTEIEYLKLSNLIAAIIISD 343 (693)
Q Consensus 264 ~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 343 (693)
++++|.+.+......+..++.++.+...--.+... ..+.
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-----------------------------------~~l~------ 248 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE-----------------------------------RNLE------ 248 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS-----------------------------------CCCS------
T ss_pred eccCCccchhHHHHHhccccccccccccccccccC-----------------------------------Cccc------
Confidence 99999887544444444444443322110000000 0000
Q ss_pred CcccccCChhhhcCCCCCeeeC-ccccccCCCCCCCCcccccccCcccCCCCCcCCCccccCCCCCCCCCCCCCCccccc
Q 037679 344 KNFVGEIPTSISSLKGLRTLSL-SNNNLRGGAIPQGTQFSTFTNDWFAGNPGLCGEPLSRKCGNSEASPVEDDPPSESVL 422 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~~L~~L~l-~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~ 422 (693)
.+.......+..+ +++.+.+ ..+.+.+ ..|. + ..
T Consensus 249 -~~~~~~~~~l~~l-~l~~l~l~~~~~~~~-~~~~-----------~-------------------------------~~ 283 (606)
T 3vq2_A 249 -IFEPSIMEGLCDV-TIDEFRLTYTNDFSD-DIVK-----------F-------------------------------HC 283 (606)
T ss_dssp -CCCGGGGTTGGGS-EEEEEEECCCTTCCG-GGGS-----------C-------------------------------GG
T ss_pred -ccChHHhhhhhhc-cHhheeccccccccc-cccc-----------c-------------------------------cc
Confidence 0001111122222 3555555 3444432 2221 1 11
Q ss_pred ccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCCcEEe
Q 037679 423 AFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLG 502 (693)
Q Consensus 423 ~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 502 (693)
...++.+.++++.+. .+| .+..+++|++|++.+|.. ...+.+ .+++|++|++++|...+. ..+..+++|++|+
T Consensus 284 l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l--~~lp~~-~l~~L~~L~l~~n~~~~~--~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 284 LANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL--KQFPTL-DLPFLKSLTLTMNKGSIS--FKKVALPSLSYLD 356 (606)
T ss_dssp GTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC--SSCCCC-CCSSCCEEEEESCSSCEE--CCCCCCTTCCEEE
T ss_pred CCCCCEEEecCccch-hhh-hccccccCCEEEcccccC--cccccC-CCCccceeeccCCcCccc--hhhccCCCCCEEE
Confidence 224667777777774 455 778899999999999965 445567 999999999999964432 3667899999999
Q ss_pred ccCCccccc--ccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccch-hccCCCCCCcEEecccCC
Q 037679 503 ISDCSFIGK--IPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQ-ASLGNLTQLDSLTISNSN 579 (693)
Q Consensus 503 l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~ls~n~ 579 (693)
+++|.++.. .+..+..+++|++|++++|.+.+ .+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 999988755 36778999999999999999754 55778899999999999999988766 678899999999999999
Q ss_pred CCccccchhHhhhcCCCCcEEEccCCCCCCc-ccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCCCC
Q 037679 580 FSRLMSSSLSWLTNLNQLTSLNFPYCNLNNE-IPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGR 658 (693)
Q Consensus 580 l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 658 (693)
+....+. .+..+++|++|++++|.+.+. .|..+..+++|++|++++|.+++..|..+.++++|+.|++++|++.+.
T Consensus 436 l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 436 TKIDFDG---IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512 (606)
T ss_dssp CEECCTT---TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE
T ss_pred CCccchh---hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCc
Confidence 8776554 356889999999999999873 688899999999999999999988888999999999999999999988
Q ss_pred cchhhcCCCCCCeEEccCCcccCCccCcccccc
Q 037679 659 IPVEISNLTQLQSLQLSSNQLEGSVPSSIFELR 691 (693)
Q Consensus 659 ~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~ 691 (693)
.|..+..+++|++||+++|+++ .+|+.+..+.
T Consensus 513 ~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 513 DSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp EGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred CHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence 8999999999999999999999 8998877654
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-44 Score=403.48 Aligned_cols=514 Identities=22% Similarity=0.217 Sum_probs=374.7
Q ss_pred ccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 6 l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
.++++.++.+++ .+|..+. +++++|++++|.++++.+.+|.++++|++|++++|++.+..+.. |.++++|++|++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~--~~~l~~L~~L~L 83 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLIL 83 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT--TTTCTTCCEEEC
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccc--ccCchhCCEEeC
Confidence 356777777777 4555453 67889999999888777888888999999999988887766655 788888888888
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGP 164 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 164 (693)
++|.++...+..|. ++++|++|++++|+++.++. .++++++|++|++++|.++.+...
T Consensus 84 ~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp-------------------- 142 (570)
T 2z63_A 84 TGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-------------------- 142 (570)
T ss_dssp TTCCCCEECTTTTT-TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC--------------------
T ss_pred cCCcCCccCHhhhc-CccccccccccccccccCCCccccccccccEEecCCCccceecCh--------------------
Confidence 88888877777776 78888888888888776665 577777777777777776652211
Q ss_pred CCCCCCCCCCEEeCCCCCCCCCcccccccccccc----cEEEcccccccccccccccCCCCccEEEccCCcCCCceeeec
Q 037679 165 LPVPSLNGLQALDLSYNNLSGMLPECLGNFSVEL----SALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILK 240 (693)
Q Consensus 165 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L----~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~ 240 (693)
..+..+++|++|++++|.+.+..+..++.+. +| +.+++++|.+..+.+..|... +|++|++++|.....
T Consensus 143 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~----- 215 (570)
T 2z63_A 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLN----- 215 (570)
T ss_dssp GGGGGCTTCCEEECTTSCCCEECGGGGHHHH-TCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTT-----
T ss_pred hhhcccCCCCEEeCcCCccceecHHHccchh-ccchhhhhcccCCCCceecCHHHhccC-cceeEeccccccccc-----
Confidence 1123566777777777777766677777777 77 788888888888877777655 788888887753311
Q ss_pred ccccCCCCCCCccCCCCCCceEEecCCCcccC-----CCCCcccccchhhhhhhcccccchhccccccccccceeccccc
Q 037679 241 FNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTG-----NLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYAD 315 (693)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (693)
.....+..+..++...+....+.. .++...+..+..
T Consensus 216 --------~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~------------------------------- 256 (570)
T 2z63_A 216 --------VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN------------------------------- 256 (570)
T ss_dssp --------HHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG-------------------------------
T ss_pred --------chhhhhcCccccceeeeccccccCchhhhhcchhhhccccc-------------------------------
Confidence 001112345555555443322221 111111111111
Q ss_pred cceeecCCCchhhhhhhhhhhhheeecCC-cccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCC
Q 037679 316 YSLTMSNKGTEIEYLKLSNLIAAIIISDK-NFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPG 394 (693)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~ 394 (693)
-.++.++++.+ .+.+..+.++..+++|++|++++|.+..
T Consensus 257 ------------------l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~---------------------- 296 (570)
T 2z63_A 257 ------------------LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER---------------------- 296 (570)
T ss_dssp ------------------SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS----------------------
T ss_pred ------------------cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh----------------------
Confidence 12456666666 6667778888899999999999888762
Q ss_pred CcCCCccccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcccccccccC
Q 037679 395 LCGEPLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLL 474 (693)
Q Consensus 395 l~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 474 (693)
+|..+..+ +|++|++.+|... ..+. ..+++|
T Consensus 297 ---------------------------------------------l~~~~~~~-~L~~L~l~~n~~~--~l~~-~~l~~L 327 (570)
T 2z63_A 297 ---------------------------------------------VKDFSYNF-GWQHLELVNCKFG--QFPT-LKLKSL 327 (570)
T ss_dssp ---------------------------------------------CCBCCSCC-CCSEEEEESCBCS--SCCB-CBCSSC
T ss_pred ---------------------------------------------hhhhhccC-CccEEeeccCccc--ccCc-cccccc
Confidence 23344455 7888888887433 2222 467778
Q ss_pred CeeEecccccCCCchhhhhcCCCCcEEeccCCcccccc--cccccccCCCcEEEeeCCcCCCCccccccCCccccEEEec
Q 037679 475 EDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKI--PSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEIS 552 (693)
Q Consensus 475 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 552 (693)
++|++++|.+.+..+. ..+++|++|++++|.+.... +..+..+++|++|++++|.+.+..+. +..+++|+.|+++
T Consensus 328 ~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~ 404 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ 404 (570)
T ss_dssp CEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECT
T ss_pred CEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEcc
Confidence 8888888877654333 67788899999888876543 56678888999999999987554444 7888999999999
Q ss_pred Cccccccch-hccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCC-CcccccccCCCCCCEEEccCCc
Q 037679 553 SFNFSSTLQ-ASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLN-NEIPFGISNLTQLTALDLSYNQ 630 (693)
Q Consensus 553 ~~~~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~ 630 (693)
+|.+.+..+ ..+..+++|++|++++|.+....+. .+..+++|++|++++|.+. +.+|..+..+++|++|++++|.
T Consensus 405 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp TSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT---TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCccccccchhhhhcCCCCCEEeCcCCcccccchh---hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 988877644 4678888999999999987765443 3467889999999999987 4678888999999999999999
Q ss_pred cCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCccCc
Q 037679 631 LTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVPSS 686 (693)
Q Consensus 631 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 686 (693)
+++..|..+.++++|+.|++++|++.+..+..+..+++|++|++++|++.+.+|..
T Consensus 482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 99777888999999999999999999777788899999999999999999988853
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-44 Score=416.32 Aligned_cols=535 Identities=21% Similarity=0.223 Sum_probs=363.4
Q ss_pred cEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcc-cHHHHhhcCCCCCEEEC
Q 037679 7 STLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTV-DLNMLLLNLKSLTALVL 85 (693)
Q Consensus 7 ~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~-~~~~~l~~l~~L~~L~L 85 (693)
+..+.+++.++. +|. ..++|++||+++|.++++.+.+|.++++|++|++++|.....+ +.. |.++++|++|+|
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~--f~~L~~L~~L~L 80 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA--FRNLPNLRILDL 80 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT--TSSCTTCCEEEC
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH--hcCCCCCCEEEC
Confidence 456777777774 444 3577888888888888777788888888888888888655444 444 788888888888
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCc-hhh--hhhcCCCccEEEcCCCCCCCCCCC--ccCCCCCcEEeCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSE-FPY--FLHNQDELVSLDLSSNKIAGQDLL--VLPWSKMNTLDLGFNK 160 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~--~l~~l~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~l~~n~ 160 (693)
++|.+....+..|. ++++|++|++++|.++. ++. +++++++|++|++++|.++..... ..++++|++|++++|.
T Consensus 81 s~N~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQ-GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TTCCCCEECTTSSC-SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCcCcccCHhHcc-CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 88888877777777 88888888888888774 343 377888888888888887764432 2366666666666666
Q ss_pred CCCCCCCC--CC--CCCCEEeCCCCCCCCCccccccccccc------ccEEEcccccccccccccccC---CCCccEEEc
Q 037679 161 LQGPLPVP--SL--NGLQALDLSYNNLSGMLPECLGNFSVE------LSALKLQANNFYRIVPQTFMN---GTNLMMIDF 227 (693)
Q Consensus 161 ~~~~~~~~--~l--~~L~~L~L~~~~i~~~~~~~~~~~~~~------L~~L~L~~~~i~~~~~~~~~~---~~~L~~L~l 227 (693)
+.+..+.. .+ ++|+.|++++|.+.+..+..+..+. . |+.|++++|.+....+..+.. ...++.+.+
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM-NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSS-CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchhhcC-CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 65433222 22 5666666666666655555444443 3 666666666555444444332 245555655
Q ss_pred cCCcCCCceeeecccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhcccccccccc
Q 037679 228 SNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLG 307 (693)
Q Consensus 228 ~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~ 307 (693)
.++.+.. ....+.+.+...........++|+.|++++|.+.+..+ ..+..+
T Consensus 239 ~~~~~~~---~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l------------------------- 289 (844)
T 3j0a_A 239 AHHIMGA---GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS-RVFETL------------------------- 289 (844)
T ss_dssp CSSCCBC---SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS-CCSSSC-------------------------
T ss_pred ccccccc---cccccccCCCChhhhhccccCCccEEECCCCcccccCh-hhhhcC-------------------------
Confidence 5333221 01111122222222221223566666666666552222 112222
Q ss_pred ceeccccccceeecCCCchhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccC
Q 037679 308 FTYYGYADYSLTMSNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTND 387 (693)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~ 387 (693)
+.++.|++++|.+.+..+.++..+++|++|++++|.+..
T Consensus 290 --------------------------~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------- 328 (844)
T 3j0a_A 290 --------------------------KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE--------------- 328 (844)
T ss_dssp --------------------------CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC---------------
T ss_pred --------------------------CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc---------------
Confidence 334566666666666666666666677777766666542
Q ss_pred cccCCCCCcCCCccccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCccc
Q 037679 388 WFAGNPGLCGEPLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQ 467 (693)
Q Consensus 388 ~~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 467 (693)
..+..+..+++|++|++++|.........
T Consensus 329 ---------------------------------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 357 (844)
T 3j0a_A 329 ---------------------------------------------------LYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357 (844)
T ss_dssp ---------------------------------------------------CCSCSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred ---------------------------------------------------cCHHHhcCCCCCCEEECCCCCCCccChhh
Confidence 33455667889999999998544444445
Q ss_pred ccccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCcc-ccccCCccc
Q 037679 468 FQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELP-TSIGNLASL 546 (693)
Q Consensus 468 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L 546 (693)
|..+++|++|++++|.+++. ..+++|+.|++++|.++ .+|. ...+++.|++++|.+.+... ..+..+++|
T Consensus 358 ~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPK---INLTANLIHLSENRLENLDILYFLLRVPHL 428 (844)
T ss_dssp SCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCC---CCTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred hcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-cccc---cccccceeecccCccccCchhhhhhcCCcc
Confidence 88899999999999988743 23788999999999877 3333 25678999999999865432 335678999
Q ss_pred cEEEecCccccccch-hccCCCCCCcEEecccCCCCccccc--hhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCE
Q 037679 547 KALEISSFNFSSTLQ-ASLGNLTQLDSLTISNSNFSRLMSS--SLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTA 623 (693)
Q Consensus 547 ~~L~l~~~~~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~--~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 623 (693)
+.|++++|++.+... ..+..+++|+.|++++|.+....+. ....+..+++|++|++++|.+++..+..+.++++|++
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 508 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence 999999998876533 2455678999999999988643221 1123567899999999999999888888899999999
Q ss_pred EEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCcc
Q 037679 624 LDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 624 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 684 (693)
|++++|++++..+..+. ++|+.|++++|++.+..|..+ ++|+.|++++||+.+.++
T Consensus 509 L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 509 LSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp EEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred eECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 99999999877666665 899999999999998777665 478999999999988665
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.9e-42 Score=385.30 Aligned_cols=497 Identities=16% Similarity=0.162 Sum_probs=349.9
Q ss_pred CCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEE
Q 037679 4 NKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTAL 83 (693)
Q Consensus 4 ~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L 83 (693)
+...+.+.+++.++ .+|..+. ++|++|++++|.+++..+.+|.++++|++|++++|++.+..+.. |.++++|++|
T Consensus 5 ~~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L 79 (549)
T 2z81_A 5 DASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA--FYSLGSLEHL 79 (549)
T ss_dssp CTTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT--TTTCTTCCEE
T ss_pred CCCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh--ccccccCCEE
Confidence 33445677777777 4454443 77888888888888777778888888888888888887666655 7788888888
Q ss_pred ECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCc--hhhhhhcCCCccEEEcCCCCC-CCCCCCccCCCCCcEEeCCCCC
Q 037679 84 VLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSE--FPYFLHNQDELVSLDLSSNKI-AGQDLLVLPWSKMNTLDLGFNK 160 (693)
Q Consensus 84 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~l~~l~~L~~L~L~~~~~-~~~~~~~~~~~~L~~L~l~~n~ 160 (693)
++++|.+....+..+. ++++|++|++++|+++. .|..++++++|++|++++|.+ ..++
T Consensus 80 ~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~------------------ 140 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFG-PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR------------------ 140 (549)
T ss_dssp ECTTSCCCSCCHHHHT-TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC------------------
T ss_pred ECCCCccCccCHHHhc-cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC------------------
Confidence 8888888777766666 77777777777777763 345667777777777777653 2211
Q ss_pred CCCCCCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeec
Q 037679 161 LQGPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILK 240 (693)
Q Consensus 161 ~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~ 240 (693)
...+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+..++...+..+++|++|++++|+++...
T Consensus 141 ---~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---- 212 (549)
T 2z81_A 141 ---RIDFAGLTSLNELEIKALSLRNYQSQSLKSIR-DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ---- 212 (549)
T ss_dssp ---TTTTTTCCEEEEEEEEETTCCEECTTTTTTCS-EEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCC----
T ss_pred ---HhhhhcccccCeeeccCCcccccChhhhhccc-cCceEecccCcccccchhhHhhcccccEEEccCCcccccc----
Confidence 11234567777888888888777778888888 8888888888877665555566888888888888875310
Q ss_pred ccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceee
Q 037679 241 FNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTM 320 (693)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (693)
..+.+ ....+++|+.|++++|.+++..+.
T Consensus 213 ------~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~-------------------------------------------- 241 (549)
T 2z81_A 213 ------FSPLP-VDEVSSPMKKLAFRGSVLTDESFN-------------------------------------------- 241 (549)
T ss_dssp ------CCCCS-SCCCCCCCCEEEEESCEEEHHHHH--------------------------------------------
T ss_pred ------ccccc-hhhhhhcccceeccccccchhHHH--------------------------------------------
Confidence 00111 113467788888888776532111
Q ss_pred cCCCchhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCCcCCCc
Q 037679 321 SNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLCGEPL 400 (693)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 400 (693)
.++..+..+++|+.+++++|.+.+ ++...
T Consensus 242 ----------------------------~l~~~~~~~~~L~~l~l~~~~~~~--~~~~~--------------------- 270 (549)
T 2z81_A 242 ----------------------------ELLKLLRYILELSEVEFDDCTLNG--LGDFN--------------------- 270 (549)
T ss_dssp ----------------------------HHHGGGGGCTTCCEEEEESCEEEC--CSCCC---------------------
T ss_pred ----------------------------HHHHHhhhhccccccccccccccc--ccccc---------------------
Confidence 011233456677777777776552 11100
Q ss_pred cccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCC----Ccc-cccccccCC
Q 037679 401 SRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTG----YLP-QFQKSSLLE 475 (693)
Q Consensus 401 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~-~~~~~~~L~ 475 (693)
......+..+++++.|++.++..... ..+ .+....+|+
T Consensus 271 -------------------------------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~ 313 (549)
T 2z81_A 271 -------------------------------------PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313 (549)
T ss_dssp -------------------------------------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred -------------------------------------ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence 00011223456666666666532111 011 133456788
Q ss_pred eeEecccccCCCchhhhhcCCCCcEEeccCCccccccc---ccccccCCCcEEEeeCCcCCCCcc--ccccCCccccEEE
Q 037679 476 DLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIP---SSLFNLTKLEHLYLSGNRFLDELP--TSIGNLASLKALE 550 (693)
Q Consensus 476 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~ 550 (693)
+|++++|.+.......+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+ ..+..+++|++|+
T Consensus 314 ~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393 (549)
T ss_dssp EEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred EEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence 99999998874443444678999999999998876553 336788999999999999865432 4578899999999
Q ss_pred ecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCc
Q 037679 551 ISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQ 630 (693)
Q Consensus 551 l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~ 630 (693)
+++|++.. .+..+..+++|++|++++|.+...+.. ..++|++|++++|++++.. ..+++|++|++++|+
T Consensus 394 Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l~~~------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~ 462 (549)
T 2z81_A 394 ISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVKTC------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNK 462 (549)
T ss_dssp CTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCCCTT------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSC
T ss_pred CCCCCCcc-CChhhcccccccEEECCCCCcccccch------hcCCceEEECCCCChhhhc----ccCChhcEEECCCCc
Confidence 99998875 455678889999999999988755432 1268999999999988532 578999999999999
Q ss_pred cCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCcc
Q 037679 631 LTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 631 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 684 (693)
++ .+|. ...+++|+.|++++|++++..|..+..+++|++|++++|++.+.+|
T Consensus 463 l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 463 LK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 98 5565 4568999999999999998888889999999999999999998887
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-42 Score=401.03 Aligned_cols=520 Identities=21% Similarity=0.217 Sum_probs=386.5
Q ss_pred cEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcC-CchhhhhhhcCCCCCcEEe
Q 037679 31 QIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKL-SLLTRATLNTNLPNFTVIG 109 (693)
Q Consensus 31 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~-~~~~~~~~~~~l~~L~~L~ 109 (693)
+..+.+++.++.+ |. -.++|++|+|++|.+.+..+.. |.++++|++|++++|.. ....+..|. ++++|++|+
T Consensus 7 ~~~dcs~~~L~~v-P~---lp~~l~~LdLs~N~i~~i~~~~--~~~l~~L~~LdLs~n~~~~~i~~~~f~-~L~~L~~L~ 79 (844)
T 3j0a_A 7 RIAFYRFCNLTQV-PQ---VLNTTERLLLSFNYIRTVTASS--FPFLEQLQLLELGSQYTPLTIDKEAFR-NLPNLRILD 79 (844)
T ss_dssp EEEEESCCCSSCC-CS---SCTTCCEEEEESCCCCEECSSS--CSSCCSCSEEEECTTCCCCEECTTTTS-SCTTCCEEE
T ss_pred eEEEccCCCCCCC-CC---CCCCcCEEECCCCcCCccChhH--CcccccCeEEeCCCCCCccccCHHHhc-CCCCCCEEE
Confidence 4567788888844 43 4578999999999998877777 89999999999999854 344466777 999999999
Q ss_pred ccCCCCCch-hhhhhcCCCccEEEcCCCCCCCCCCC---ccCCCCCcEEeCCCCCCCCCCC---CCCCCCCCEEeCCCCC
Q 037679 110 FNSCNLSEF-PYFLHNQDELVSLDLSSNKIAGQDLL---VLPWSKMNTLDLGFNKLQGPLP---VPSLNGLQALDLSYNN 182 (693)
Q Consensus 110 l~~~~l~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~L~~~~ 182 (693)
+++|.++.+ |.+++++++|++|++++|.+++.... ..++++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 999999866 77899999999999999998863222 3377778888888777765432 3467777777777777
Q ss_pred CCCCcccccccc--cccccEEEcccccccccccccccCCCC------ccEEEccCCcCCCceeeecccccCCCCCCCc-c
Q 037679 183 LSGMLPECLGNF--SVELSALKLQANNFYRIVPQTFMNGTN------LMMIDFSNNSLQGRALILKFNNFHGEIEEPQ-T 253 (693)
Q Consensus 183 i~~~~~~~~~~~--~~~L~~L~L~~~~i~~~~~~~~~~~~~------L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~-~ 253 (693)
+.+..+..+..+ + +|+.|++++|.+....+..+..+++ |++|++++|.++. ..+... .
T Consensus 160 i~~~~~~~l~~l~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~------------~~~~~~~~ 226 (844)
T 3j0a_A 160 IFLVCEHELEPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV------------DITGNFSN 226 (844)
T ss_dssp CCCCCSGGGHHHHHC-SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST------------TTTSGGGG
T ss_pred CCeeCHHHcccccCC-ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch------------hHHHHHHh
Confidence 777777777666 5 7777777777777666655555444 6777777666542 111111 0
Q ss_pred CCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceeecCCCchhhhhh--
Q 037679 254 GFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKGTEIEYLK-- 331 (693)
Q Consensus 254 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 331 (693)
......++.+.+..+........ .. +.. .....+.
T Consensus 227 ~l~~~~l~~L~l~~~~~~~~~~~---~~---l~~-------------------------------------~~~~~f~~l 263 (844)
T 3j0a_A 227 AISKSQAFSLILAHHIMGAGFGF---HN---IKD-------------------------------------PDQNTFAGL 263 (844)
T ss_dssp TSCSCCBSEEECCSSCCBCSSSC---SS---STT-------------------------------------GGGTTTTTT
T ss_pred hcCcccccceecccccccccccc---cc---cCC-------------------------------------CChhhhhcc
Confidence 11223455565553322210000 00 000 0000000
Q ss_pred hhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCCcCCCccccCCCCCCCC
Q 037679 332 LSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLCGEPLSRKCGNSEASP 411 (693)
Q Consensus 332 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~c~~~~~~~ 411 (693)
....++.|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--------------------------------------- 304 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK--------------------------------------- 304 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE---------------------------------------
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC---------------------------------------
Confidence 12567888888888888778888888899999988888763
Q ss_pred CCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhh
Q 037679 412 VEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDS 491 (693)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 491 (693)
..+..+.++++|++|++++|.........|..+++|++|++++|.+....+..
T Consensus 305 ---------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 357 (844)
T 3j0a_A 305 ---------------------------IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357 (844)
T ss_dssp ---------------------------ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred ---------------------------CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh
Confidence 22345667899999999999654444567999999999999999998888888
Q ss_pred hhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccc-hhccCCCCCC
Q 037679 492 IENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTL-QASLGNLTQL 570 (693)
Q Consensus 492 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L 570 (693)
|..+++|+.|++++|.++.. ..+++|+.|++++|++. ..|.. ..+++.|++++|++.... ...+..+++|
T Consensus 358 ~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL 428 (844)
T ss_dssp SCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred hcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCcc
Confidence 99999999999999987632 23889999999999985 33432 578999999999988752 3346689999
Q ss_pred cEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCC-----cccccccCCCCCCEEEccCCccCCCccccccCcCcc
Q 037679 571 DSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNN-----EIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKV 645 (693)
Q Consensus 571 ~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 645 (693)
+.|++++|.+....+... ...+++|+.|++++|.+.. ..+..+.++++|++|++++|.+++..|..+.++++|
T Consensus 429 ~~L~Ls~N~l~~~~~~~~--~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 506 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQT--PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506 (844)
T ss_dssp CEEEEESCCCCCCCSSSS--SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC
T ss_pred ceeeCCCCcccccccccc--cccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh
Confidence 999999999886543221 3457999999999999873 334567889999999999999998888889999999
Q ss_pred cEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCccCccccccC
Q 037679 646 SSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVPSSIFELRN 692 (693)
Q Consensus 646 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~ 692 (693)
+.|++++|++++..+..+. ++|++||+++|.+.+..|+.+.+++.
T Consensus 507 ~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~ 551 (844)
T 3j0a_A 507 RGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSV 551 (844)
T ss_dssp SEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCE
T ss_pred heeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCE
Confidence 9999999999976666555 89999999999999999988876653
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=380.57 Aligned_cols=487 Identities=21% Similarity=0.241 Sum_probs=365.5
Q ss_pred CCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEE
Q 037679 4 NKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTAL 83 (693)
Q Consensus 4 ~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L 83 (693)
+++++|++++|.++++.+.+|.++++|++|++++|.++++.+.+|.++++|++|++++|++.+..+.. |.++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT--TTTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh--hcCccccccc
Confidence 46899999999999888999999999999999999999888899999999999999999998777766 9999999999
Q ss_pred ECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCc--hhhhhhcCCCccEEEcCCCCCCCCCCCcc-CCCCC----cEEeC
Q 037679 84 VLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSE--FPYFLHNQDELVSLDLSSNKIAGQDLLVL-PWSKM----NTLDL 156 (693)
Q Consensus 84 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~L----~~L~l 156 (693)
++++|.++......+. ++++|++|++++|.++. +|..++++++|++|++++|.++.+....+ .+++| +.+++
T Consensus 106 ~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 106 VAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp ECTTSCCCCSTTCSCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred cccccccccCCCcccc-ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 9999999887776677 99999999999999985 68899999999999999999987554433 56666 79999
Q ss_pred CCCCCCCCCCCC-CCCCCCEEeCCCCCCCC-CcccccccccccccEEEccccc------ccccccccccCCCC--ccEEE
Q 037679 157 GFNKLQGPLPVP-SLNGLQALDLSYNNLSG-MLPECLGNFSVELSALKLQANN------FYRIVPQTFMNGTN--LMMID 226 (693)
Q Consensus 157 ~~n~~~~~~~~~-~l~~L~~L~L~~~~i~~-~~~~~~~~~~~~L~~L~L~~~~------i~~~~~~~~~~~~~--L~~L~ 226 (693)
++|.+.+..+.. ...+|++|++++|.... ..+..+..+. .++...+.... +..+....+..+++ ++.++
T Consensus 185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~-~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA-GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTT-TCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCCceecCHHHhccCcceeEecccccccccchhhhhcCcc-ccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 999988544332 33479999999885432 2344555666 66665554322 22333344444443 45555
Q ss_pred ccCCcCCCceeeecccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccc
Q 037679 227 FSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVL 306 (693)
Q Consensus 227 l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~ 306 (693)
+.++. .+.+..+.. +..+++|+.|++++|.+. .+|
T Consensus 264 l~~~~-----------~~~~~~~~~--~~~l~~L~~L~l~~~~l~-~l~------------------------------- 298 (570)
T 2z63_A 264 LAYLD-----------YYLDDIIDL--FNCLTNVSSFSLVSVTIE-RVK------------------------------- 298 (570)
T ss_dssp EEETT-----------EEESCSTTT--TGGGTTCSEEEEESCEEC-SCC-------------------------------
T ss_pred hhcch-----------hhhhhchhh--hcCcCcccEEEecCccch-hhh-------------------------------
Confidence 55541 112233333 367888999999888776 333
Q ss_pred cceeccccccceeecCCCchhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCccccccc
Q 037679 307 GFTYYGYADYSLTMSNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTN 386 (693)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 386 (693)
.++..+ +|++|++++|.+.. +|
T Consensus 299 ---------------------------------------------~~~~~~-~L~~L~l~~n~~~~--l~---------- 320 (570)
T 2z63_A 299 ---------------------------------------------DFSYNF-GWQHLELVNCKFGQ--FP---------- 320 (570)
T ss_dssp ---------------------------------------------BCCSCC-CCSEEEEESCBCSS--CC----------
T ss_pred ---------------------------------------------hhhccC-CccEEeeccCcccc--cC----------
Confidence 233344 56666666665541 11
Q ss_pred CcccCCCCCcCCCccccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcc
Q 037679 387 DWFAGNPGLCGEPLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLP 466 (693)
Q Consensus 387 ~~~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 466 (693)
. ..+++|++|++.+|... ...+
T Consensus 321 -------------------------------------------------------~--~~l~~L~~L~l~~n~~~-~~~~ 342 (570)
T 2z63_A 321 -------------------------------------------------------T--LKLKSLKRLTFTSNKGG-NAFS 342 (570)
T ss_dssp -------------------------------------------------------B--CBCSSCCEEEEESCBSC-CBCC
T ss_pred -------------------------------------------------------c--ccccccCEEeCcCCccc-cccc
Confidence 1 13456666666666322 2111
Q ss_pred cccccccCCeeEecccccCCCc--hhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCcc-ccccCC
Q 037679 467 QFQKSSLLEDLRLSYTRFSGKI--PDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELP-TSIGNL 543 (693)
Q Consensus 467 ~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l 543 (693)
. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+....+. +..+++|++|++++|.+.+..+ ..+..+
T Consensus 343 ~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 343 E-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp C-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred c-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcC
Confidence 1 56667777777777776443 56777888899999998887755444 8888999999999988866554 467788
Q ss_pred ccccEEEecCccccccchhccCCCCCCcEEecccCCCCc-cccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCC
Q 037679 544 ASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSR-LMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLT 622 (693)
Q Consensus 544 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~-~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 622 (693)
++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+ ..+..+++|++|++++|++++..|..+..+++|+
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch---hhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 999999999998888777788889999999999988763 222 2356788999999999999877788889999999
Q ss_pred EEEccCCccCCCccccccCcCcccEEeccCccCCCCcc
Q 037679 623 ALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIP 660 (693)
Q Consensus 623 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 660 (693)
+|++++|.+++..+..+.++++|+.|++++|++.+..|
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 99999999987777788889999999999999986544
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.7e-39 Score=366.54 Aligned_cols=536 Identities=20% Similarity=0.220 Sum_probs=367.4
Q ss_pred cEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECC
Q 037679 7 STLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLS 86 (693)
Q Consensus 7 ~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~ 86 (693)
++.+.++.+++ .+|..+. +++++|||++|.|+.+.+.+|.++++|++|+|++|++.+..+.+ |.++++|++|+|+
T Consensus 34 ~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~--f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 34 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILT 108 (635)
T ss_dssp TEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT--TTTCTTCCEEECT
T ss_pred CEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhH--hcCCCCCCEEEcc
Confidence 34566666677 4565553 57889999999988777888999999999999999888776666 8889999999999
Q ss_pred CCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCCCCCCCCCCCc--cCCCCCcEEeCCCCCCCC
Q 037679 87 SNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSSNKIAGQDLLV--LPWSKMNTLDLGFNKLQG 163 (693)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~ 163 (693)
+|.++...+..|. ++++|++|++++|+++.++. .++++++|++|++++|.++.+.... ..+++|++|++++|.+++
T Consensus 109 ~N~l~~l~~~~f~-~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 109 GNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TCCCCEECGGGGT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCcCCCCCHHHhc-CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 9988888777777 89999999999998888775 5888999999999999888754433 378889999999998875
Q ss_pred CCCCC-----CC-CCCCEEeCCCCCCCCCcccccccccccccEEEccccccc-ccccccccCCCCccEEEccCCcCCCce
Q 037679 164 PLPVP-----SL-NGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFY-RIVPQTFMNGTNLMMIDFSNNSLQGRA 236 (693)
Q Consensus 164 ~~~~~-----~l-~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~ 236 (693)
..+.. .+ .....++++.|.+....+..+.. . .++.+++.+|... ...+..+..+..++...+..+.....
T Consensus 188 ~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~-~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~- 264 (635)
T 4g8a_A 188 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-I-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE- 264 (635)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-C-EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS-
T ss_pred cccccccchhhhhhhhhhhhcccCcccccCcccccc-h-hhhhhhhhcccccccccchhhcCCcccccccccccccccc-
Confidence 43222 22 23457889999988655554443 4 5778888877543 33445566777777776654332210
Q ss_pred eeecccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceecccccc
Q 037679 237 LILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADY 316 (693)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (693)
..+.. .....+..+..+...++..+....... ...
T Consensus 265 -----~~l~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~------------------------------------- 299 (635)
T 4g8a_A 265 -----GNLEK--FDKSALEGLCNLTIEEFRLAYLDYYLD-GII------------------------------------- 299 (635)
T ss_dssp -----CCCSC--CCTTTTGGGGGSEEEEEEEECCCSCEE-ECT-------------------------------------
T ss_pred -----ccccc--ccccccccccchhhhhhhhhhhccccc-chh-------------------------------------
Confidence 00111 111122334455555544433221100 000
Q ss_pred ceeecCCCchhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCCc
Q 037679 317 SLTMSNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLC 396 (693)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~ 396 (693)
..+.....+..+++..+.+.... .+..+..++.|++.+|.+.. ++.
T Consensus 300 -----------~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~--~~~------------------- 345 (635)
T 4g8a_A 300 -----------DLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQ--FPT------------------- 345 (635)
T ss_dssp -----------TTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESS--CCC-------------------
T ss_pred -----------hhhhhhccccccccccccccccc--ccccchhhhhhhcccccccC--cCc-------------------
Confidence 00111233455555555544332 34566778888888777652 111
Q ss_pred CCCccccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcccccccccCCe
Q 037679 397 GEPLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLED 476 (693)
Q Consensus 397 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 476 (693)
..++.|+.+++..+... .......+++|+.
T Consensus 346 ------------------------------------------------~~l~~L~~l~l~~n~~~--~~~~~~~l~~L~~ 375 (635)
T 4g8a_A 346 ------------------------------------------------LKLKSLKRLTFTSNKGG--NAFSEVDLPSLEF 375 (635)
T ss_dssp ------------------------------------------------CBCTTCCEEEEESCCSC--CBCCCCBCTTCCE
T ss_pred ------------------------------------------------ccchhhhhcccccccCC--CCccccccccccc
Confidence 12456666666666321 2234456677788
Q ss_pred eEecccccCC--CchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCcc-ccccCCccccEEEecC
Q 037679 477 LRLSYTRFSG--KIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELP-TSIGNLASLKALEISS 553 (693)
Q Consensus 477 L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~ 553 (693)
+++++|.+.. ..+..+..+.+|+++++..+.... .+..+..+++|+.+++.++......+ ..+..+++++.++++.
T Consensus 376 L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~ 454 (635)
T 4g8a_A 376 LDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 454 (635)
T ss_dssp EECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT
T ss_pred chhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccc
Confidence 8887777643 234556677888888888876553 34557778888888888776544433 4567788888888888
Q ss_pred ccccccchhccCCCCCCcEEecccCCCCc-cccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccC
Q 037679 554 FNFSSTLQASLGNLTQLDSLTISNSNFSR-LMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLT 632 (693)
Q Consensus 554 ~~~~~~~~~~l~~l~~L~~L~ls~n~l~~-~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~ 632 (693)
|.+....+..+..+++++.|++++|.... ..+. .+..+++|++|++++|++++..|..|.++++|++|++++|+++
T Consensus 455 n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~---~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred cccccccccccccchhhhhhhhhhcccccccCch---hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence 88887777778888888888888886433 2222 2467788888888888888777888888888999999888888
Q ss_pred CCccccccCcCcccEEeccCccCCCCcchhhcCC-CCCCeEEccCCcccCCcc
Q 037679 633 GPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNL-TQLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 633 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p 684 (693)
+..+..+.++++|+.|++++|++++..|+.+..+ ++|++|++++||+.+.+.
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 7777788888889999999988888888888887 578889999888887654
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.6e-40 Score=364.25 Aligned_cols=477 Identities=19% Similarity=0.192 Sum_probs=317.0
Q ss_pred CCCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCE
Q 037679 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTA 82 (693)
Q Consensus 3 ~~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~ 82 (693)
+++|++|++++|.++++.+.+|..+++|++|++++|.+++..+.+|.++++|++|++++|++.+..+.. |.++++|++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~ 102 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW--FGPLSSLKY 102 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH--HTTCTTCCE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH--hccCCCCcE
Confidence 357999999999999888999999999999999999999888899999999999999999999887766 899999999
Q ss_pred EECCCCcCCchh-hhhhhcCCCCCcEEeccCCC-CCchh-hhhhcCCCccEEEcCCCCCCCCCCCc-cCCCCCcEEeCCC
Q 037679 83 LVLSSNKLSLLT-RATLNTNLPNFTVIGFNSCN-LSEFP-YFLHNQDELVSLDLSSNKIAGQDLLV-LPWSKMNTLDLGF 158 (693)
Q Consensus 83 L~L~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~-l~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~l~~ 158 (693)
|++++|.++... +..+. ++++|++|++++|. +..+| ..++.+++|++|++++|.++...... ..+++|++|++++
T Consensus 103 L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EECTTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EECCCCcccccchhhhhh-ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 999999998643 44566 99999999999998 66776 47899999999999999988633222 2455555555555
Q ss_pred CCCCCCCCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccc---cccccCCCCccEEEccCCcCCCc
Q 037679 159 NKLQGPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIV---PQTFMNGTNLMMIDFSNNSLQGR 235 (693)
Q Consensus 159 n~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~---~~~~~~~~~L~~L~l~~n~l~~~ 235 (693)
|. +.......+..++ +|+.|++++|.+.+.. ......+++|++|++++|.+++.
T Consensus 182 n~----------------------~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 182 SE----------------------SAFLLEIFADILS-SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp SB----------------------STTHHHHHHHSTT-TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred Cc----------------------ccccchhhHhhcc-cccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence 54 3322111122344 5555555555554431 11223345556666655554321
Q ss_pred eeeecccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccc
Q 037679 236 ALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYAD 315 (693)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (693)
.. . ..+ .....+++|+.+++++|.+.+.... +.
T Consensus 239 ~~-------~-~l~--~~~~~~~~L~~l~l~~~~~~~~~~~------~~------------------------------- 271 (549)
T 2z81_A 239 SF-------N-ELL--KLLRYILELSEVEFDDCTLNGLGDF------NP------------------------------- 271 (549)
T ss_dssp HH-------H-HHH--GGGGGCTTCCEEEEESCEEECCSCC------CC-------------------------------
T ss_pred HH-------H-HHH--HHhhhhccccccccccccccccccc------cc-------------------------------
Confidence 00 0 000 0113455666666666665421100 00
Q ss_pred cceeecCCCchhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCC
Q 037679 316 YSLTMSNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGL 395 (693)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l 395 (693)
.....+..+.+++.|.+.++.+.. ... +.
T Consensus 272 ---------------------------------~~~~~~~~l~~L~~L~l~~~~i~~--~~~-----------~~----- 300 (549)
T 2z81_A 272 ---------------------------------SESDVVSELGKVETVTIRRLHIPQ--FYL-----------FY----- 300 (549)
T ss_dssp ---------------------------------CTTTCCCCCTTCCEEEEESCBCSC--GGG-----------SC-----
T ss_pred ---------------------------------cchhhhhhhcccccccccccccch--hhh-----------cc-----
Confidence 000122334455555555544331 000 00
Q ss_pred cCCCccccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCccc-ccccccC
Q 037679 396 CGEPLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQ-FQKSSLL 474 (693)
Q Consensus 396 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L 474 (693)
.++......++|++|++.+|. +...+.. +..+++|
T Consensus 301 -------------------------------------------~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L 336 (549)
T 2z81_A 301 -------------------------------------------DLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSL 336 (549)
T ss_dssp -------------------------------------------CCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTC
T ss_pred -------------------------------------------cchhhhhhcccceEEEeccCc-cccCCHHHHhcCccc
Confidence 001111223456666666653 2222222 2456677
Q ss_pred CeeEecccccCCCch---hhhhcCCCCcEEeccCCccccccc--ccccccCCCcEEEeeCCcCCCCccccccCCccccEE
Q 037679 475 EDLRLSYTRFSGKIP---DSIENLESLSYLGISDCSFIGKIP--SSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKAL 549 (693)
Q Consensus 475 ~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 549 (693)
++|++++|.+.+..+ ..+..+++|++|++++|.++...+ ..+..+++|++|++++|++. ..|..+..+++|+.|
T Consensus 337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFL 415 (549)
T ss_dssp CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEE
T ss_pred cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEE
Confidence 777777777664332 235667788888888887764422 34777888888888888874 556667778888888
Q ss_pred EecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCC
Q 037679 550 EISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYN 629 (693)
Q Consensus 550 ~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n 629 (693)
++++|++..... .+ .++|+.|++++|.++... ..+++|++|++++|+++ .+|. ...+++|+.|++++|
T Consensus 416 ~Ls~N~l~~l~~-~~--~~~L~~L~Ls~N~l~~~~-------~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 416 NLSSTGIRVVKT-CI--PQTLEVLDVSNNNLDSFS-------LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRN 483 (549)
T ss_dssp ECTTSCCSCCCT-TS--CTTCSEEECCSSCCSCCC-------CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSS
T ss_pred ECCCCCcccccc-hh--cCCceEEECCCCChhhhc-------ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCC
Confidence 888888765432 12 257888888888877542 46788999999999887 5554 467889999999999
Q ss_pred ccCCCccccccCcCcccEEeccCccCCCCcc
Q 037679 630 QLTGPIPYSLMKLKKVSSLLLGFNQLSGRIP 660 (693)
Q Consensus 630 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 660 (693)
.+++..|..+..+++|+.|++++|++.+..|
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 484 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9987777788889999999999999886554
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.6e-39 Score=354.04 Aligned_cols=180 Identities=23% Similarity=0.311 Sum_probs=110.5
Q ss_pred CCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccc--cchhccCCCCCCcEE
Q 037679 496 ESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSS--TLQASLGNLTQLDSL 573 (693)
Q Consensus 496 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L 573 (693)
.+|+.|++++|.+.... .+..+++|++|++++|.+.+..+..++.+++|++|++++|++.+ ..+..+..+++|++|
T Consensus 302 ~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred CceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence 34555555555543221 12455666666666666655555556666666666666666654 233456666666666
Q ss_pred ecccCCCCc-cccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccC
Q 037679 574 TISNSNFSR-LMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGF 652 (693)
Q Consensus 574 ~ls~n~l~~-~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 652 (693)
++++|.+.. .+.. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++
T Consensus 380 ~Ls~N~l~~~l~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 380 DISQNSVSYDEKKG---DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVAS 453 (520)
T ss_dssp ECCSSCCBCCGGGC---SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred ECCCCcCCcccccc---hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCC
Confidence 666666655 3221 134556677777777776655554443 67777777777776 5565555777777777777
Q ss_pred ccCCCCcchh-hcCCCCCCeEEccCCcccCCcc
Q 037679 653 NQLSGRIPVE-ISNLTQLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 653 n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~p 684 (693)
|++. .+|.. +..+++|++|++++|++.+.+|
T Consensus 454 N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 454 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 7776 44543 6777777777777777776654
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=351.31 Aligned_cols=467 Identities=19% Similarity=0.183 Sum_probs=288.0
Q ss_pred cEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECC
Q 037679 7 STLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLS 86 (693)
Q Consensus 7 ~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~ 86 (693)
++|++++|.++ .+|..+. ++|++|++++|.+++..+.+|.++++|++|++++|++.+..+.. |.++++|++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV--FKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG--GTTCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH--hhcccCCCEEecC
Confidence 57788888877 4555554 77888888888877666677888888888888888777666655 7777888888888
Q ss_pred CCcCCchhhhhhhcCCCCCcEEeccCCCCCc--hhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCC
Q 037679 87 SNKLSLLTRATLNTNLPNFTVIGFNSCNLSE--FPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGP 164 (693)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 164 (693)
+|.++..... .+++|++|++++|+++. +|..++++++|++|++++|.++.. ....+++|
T Consensus 78 ~N~l~~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L------------- 138 (520)
T 2z7x_B 78 HNKLVKISCH----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS--SVLPIAHL------------- 138 (520)
T ss_dssp SSCCCEEECC----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG--GGGGGTTS-------------
T ss_pred CCceeecCcc----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh--hccccccc-------------
Confidence 8777643322 67777777777777764 456777777777777777766541 11222333
Q ss_pred CCCCCCCCCCEEeCCCCCC--CCCcccccccccccccEEEccccccccc-ccccccCCCCccEEEccCCcCCCceeeecc
Q 037679 165 LPVPSLNGLQALDLSYNNL--SGMLPECLGNFSVELSALKLQANNFYRI-VPQTFMNGTNLMMIDFSNNSLQGRALILKF 241 (693)
Q Consensus 165 ~~~~~l~~L~~L~L~~~~i--~~~~~~~~~~~~~~L~~L~L~~~~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~ 241 (693)
+|++|++++|.+ .+..|..+..+......+++++|.+... ....+..+++|+.+++++|..... .
T Consensus 139 -------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-----~ 206 (520)
T 2z7x_B 139 -------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK-----C 206 (520)
T ss_dssp -------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT-----T
T ss_pred -------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc-----c
Confidence 114444444444 3333444443331222334444443322 222334444555555544431000 0
Q ss_pred cccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceeec
Q 037679 242 NNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMS 321 (693)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (693)
..+.+..+ .+..+++|+.|++++|.+.
T Consensus 207 ~~~~~~~~---~l~~l~~L~~L~l~~~~l~-------------------------------------------------- 233 (520)
T 2z7x_B 207 SYFLSILA---KLQTNPKLSNLTLNNIETT-------------------------------------------------- 233 (520)
T ss_dssp HHHHHHHH---GGGGCTTCCEEEEEEEEEE--------------------------------------------------
T ss_pred ceeecchh---hhccccchhhccccccccC--------------------------------------------------
Confidence 00001111 1133444445544444433
Q ss_pred CCCchhhhhhhhhhhhheeecCCcccccCChhh---hcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCCcCC
Q 037679 322 NKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSI---SSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLCGE 398 (693)
Q Consensus 322 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 398 (693)
+.....+ ..+++|++|++++|.+.+ .+|...
T Consensus 234 --------------------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~------------------- 267 (520)
T 2z7x_B 234 --------------------------WNSFIRILQLVWHTTVWYFSISNVKLQG-QLDFRD------------------- 267 (520)
T ss_dssp --------------------------HHHHHHHHHHHHTSSCSEEEEEEEEEES-CCCCCC-------------------
T ss_pred --------------------------HHHHHHHHHHhhhCcccEEEeecccccC-ccccch-------------------
Confidence 2111100 113466666666666553 222210
Q ss_pred CccccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCccccccc---ccCC
Q 037679 399 PLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKS---SLLE 475 (693)
Q Consensus 399 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~ 475 (693)
+......+++|+.+++..|.. ......+..+ .+|+
T Consensus 268 -----------------------------------------~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 268 -----------------------------------------FDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp -----------------------------------------CCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCS
T ss_pred -----------------------------------------hhcccccCceeEeccccccce-ecchhhhhcccccCcee
Confidence 000013566666677666643 1111122222 4577
Q ss_pred eeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCC--CccccccCCccccEEEecC
Q 037679 476 DLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLD--ELPTSIGNLASLKALEISS 553 (693)
Q Consensus 476 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~ 553 (693)
.|++++|.+.... .+..+++|++|++++|.+....+..+..+++|++|++++|++.+ ..|..+..+++|+.|++++
T Consensus 306 ~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 306 NFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383 (520)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred EEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC
Confidence 8888887766422 12567888888888888887777788888889999999888865 3456678889999999999
Q ss_pred ccccc-cchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccC
Q 037679 554 FNFSS-TLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLT 632 (693)
Q Consensus 554 ~~~~~-~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~ 632 (693)
|.+.+ .....+..+++|++|++++|.++...+..+ .++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-----~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-----PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC-----CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred CcCCcccccchhccCccCCEEECcCCCCCcchhhhh-----cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 88887 444457788899999999998875443322 168999999999998 67777778999999999999998
Q ss_pred CCccccccCcCcccEEeccCccCCCC
Q 037679 633 GPIPYSLMKLKKVSSLLLGFNQLSGR 658 (693)
Q Consensus 633 ~~~~~~l~~l~~L~~L~l~~n~~~~~ 658 (693)
+..+..+..+++|+.|++++|++.+.
T Consensus 458 ~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 458 SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCHHHhccCCcccEEECcCCCCccc
Confidence 44333488899999999999999853
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-39 Score=367.41 Aligned_cols=162 Identities=20% Similarity=0.169 Sum_probs=86.2
Q ss_pred ccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCccccccccccccc-------CCCcEEEeeCCcCCCCcccccc-
Q 037679 470 KSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNL-------TKLEHLYLSGNRFLDELPTSIG- 541 (693)
Q Consensus 470 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-------~~L~~L~l~~~~l~~~~~~~~~- 541 (693)
.+++|++|++++|.+.......+..+++|++|++++|.++......+... ++|++|++++|.+. ..|..+.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 509 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA 509 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh
Confidence 34455555555555553333334445555555555555552222222211 14444444444443 2333332
Q ss_pred -CCccccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCC
Q 037679 542 -NLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQ 620 (693)
Q Consensus 542 -~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 620 (693)
.+++|+.|++++|++.+ .+..+..+++|+.|++++|. ++++|.+.+.+|..+..+++
T Consensus 510 ~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~---------------------~ls~N~l~~~~p~~l~~l~~ 567 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR---------------------DAQGNRTLREWPEGITLCPS 567 (636)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB---------------------CTTCCBCCCCCCTTGGGCSS
T ss_pred ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc---------------------ccccCcccccChHHHhcCCC
Confidence 44444444444444443 23333344444444443332 12456666777777788888
Q ss_pred CCEEEccCCccCCCccccccCcCcccEEeccCccCCC
Q 037679 621 LTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSG 657 (693)
Q Consensus 621 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 657 (693)
|++|++++|.+. .+|..+. ++|+.|++++|++..
T Consensus 568 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 568 LTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 888888888884 5666554 688888888887763
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.5e-37 Score=342.26 Aligned_cols=180 Identities=22% Similarity=0.304 Sum_probs=123.9
Q ss_pred CCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCcccccc--chhccCCCCCCcEE
Q 037679 496 ESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSST--LQASLGNLTQLDSL 573 (693)
Q Consensus 496 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L 573 (693)
.+|++|++++|.+.... ....+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+..+++|+.|
T Consensus 331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence 45666666666544221 124667777777777777666666677777777777777777653 33456777777777
Q ss_pred ecccCCCCc-cccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccC
Q 037679 574 TISNSNFSR-LMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGF 652 (693)
Q Consensus 574 ~ls~n~l~~-~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 652 (693)
++++|.+.. .+.. .+..+++|++|++++|++++..+..+. ++|++|++++|+++ .+|..+.++++|+.|++++
T Consensus 409 ~l~~N~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 409 DVSLNSLNSHAYDR---TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp ECTTSCCBSCCSSC---CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCS
T ss_pred ECCCCcCCCccChh---hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCC
Confidence 777777765 3222 134667788888888877766554443 67888888888887 5565555788888888888
Q ss_pred ccCCCCcchh-hcCCCCCCeEEccCCcccCCcc
Q 037679 653 NQLSGRIPVE-ISNLTQLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 653 n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~p 684 (693)
|++. .+|.. +..+++|++|++++|++.+.+|
T Consensus 483 N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 483 NQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 8887 45554 7788888888888888887665
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.9e-36 Score=340.61 Aligned_cols=514 Identities=19% Similarity=0.177 Sum_probs=379.5
Q ss_pred EEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEEecc
Q 037679 32 IVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFN 111 (693)
Q Consensus 32 ~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~ 111 (693)
..+=++-.++ .+|..+. ..+++|||++|+++...+.+ |.++++|++|+|++|.++...+.+|. ++++|++|+|+
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~--f~~l~~L~~L~Ls~N~i~~i~~~~f~-~L~~L~~L~Ls 108 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYS--FFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILT 108 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECT
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHH--HhCCCCCCEEECCCCcCCCcChhHhc-CCCCCCEEEcc
Confidence 3444444566 4454332 47999999999999877777 99999999999999999998888888 99999999999
Q ss_pred CCCCCchhh-hhhcCCCccEEEcCCCCCCCCCCCc-cCCCCCcEEeCCCCCCCCCC-C--CCCCCCCCEEeCCCCCCCCC
Q 037679 112 SCNLSEFPY-FLHNQDELVSLDLSSNKIAGQDLLV-LPWSKMNTLDLGFNKLQGPL-P--VPSLNGLQALDLSYNNLSGM 186 (693)
Q Consensus 112 ~~~l~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~-~--~~~l~~L~~L~L~~~~i~~~ 186 (693)
+|+++.+|. +|+++++|++|++++|.++.++... .++++|++|++++|.+.... + +..+++|++|++++|.+.+.
T Consensus 109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 109 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 999998875 6899999999999999999877654 48999999999999997532 2 23789999999999999988
Q ss_pred ccccccccc---ccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecccccCCCCCCCccCCCCCCceEE
Q 037679 187 LPECLGNFS---VELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRII 263 (693)
Q Consensus 187 ~~~~~~~~~---~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L 263 (693)
.+..+..+. .....++++.|.+..+.+..+.. ..++.+++.+|..... .....+..+..++..
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~-------------~~~~~~~~l~~l~~~ 254 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLN-------------VMKTCIQGLAGLEVH 254 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHH-------------HHHHHHHTTTTCEEE
T ss_pred ccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhccccccc-------------ccchhhcCCcccccc
Confidence 888887665 13347889999998887766644 4677888888754310 011122445666655
Q ss_pred ecCCCcccC--CCCCcccccchhhhhhhcccccchhccccccccccceeccccccceeecCCCchhhhhhhhhhhhheee
Q 037679 264 DLSHNRFTG--NLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKGTEIEYLKLSNLIAAIII 341 (693)
Q Consensus 264 ~l~~~~~~~--~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 341 (693)
.+..+.... .+.......+..+ ..+...++
T Consensus 255 ~l~~~~~~~~~~l~~~~~~~~~~~------------------------------------------------~~l~~~~l 286 (635)
T 4g8a_A 255 RLVLGEFRNEGNLEKFDKSALEGL------------------------------------------------CNLTIEEF 286 (635)
T ss_dssp EEEEECCTTSCCCSCCCTTTTGGG------------------------------------------------GGSEEEEE
T ss_pred cccccccccccccccccccccccc------------------------------------------------cchhhhhh
Confidence 554332221 1111000111110 11111111
Q ss_pred cCC---cccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCCcCCCccccCCCCCCCCCCCCCCc
Q 037679 342 SDK---NFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLCGEPLSRKCGNSEASPVEDDPPS 418 (693)
Q Consensus 342 ~~~---~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~ 418 (693)
..+ .........+..+.+++.+.+..+.+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---------------------------------------------- 320 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER---------------------------------------------- 320 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE----------------------------------------------
T ss_pred hhhhhcccccchhhhhhhhccccccccccccccc----------------------------------------------
Confidence 111 1112233445566777777777666542
Q ss_pred ccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCC
Q 037679 419 ESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESL 498 (693)
Q Consensus 419 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 498 (693)
...+.....++.|++.+|..... ....+..|+.+++.++..... .....+++|
T Consensus 321 ----------------------~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~L~~l~l~~n~~~~~--~~~~~l~~L 373 (635)
T 4g8a_A 321 ----------------------VKDFSYNFGWQHLELVNCKFGQF---PTLKLKSLKRLTFTSNKGGNA--FSEVDLPSL 373 (635)
T ss_dssp ----------------------CGGGGSCCCCSEEEEESCEESSC---CCCBCTTCCEEEEESCCSCCB--CCCCBCTTC
T ss_pred ----------------------ccccccchhhhhhhcccccccCc---CcccchhhhhcccccccCCCC--ccccccccc
Confidence 11233467888999988843222 123566788999988876632 334578999
Q ss_pred cEEeccCCccccc--ccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCcccccc-chhccCCCCCCcEEec
Q 037679 499 SYLGISDCSFIGK--IPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSST-LQASLGNLTQLDSLTI 575 (693)
Q Consensus 499 ~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l 575 (693)
+.++++.|.+... .+..+..+.+|+.+++..+... ..+..+..+++|+.+++.++..... ....+..+.+++.+++
T Consensus 374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred ccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccc
Confidence 9999999976533 4455677899999999999863 3455677899999999998876554 3356788999999999
Q ss_pred ccCCCCccccchhHhhhcCCCCcEEEccCCCCCC-cccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCcc
Q 037679 576 SNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNN-EIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQ 654 (693)
Q Consensus 576 s~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 654 (693)
++|.+....+.. +..++++++|++++|.... ..|..+..+++|++|++++|++++..|..|.++++|+.|++++|+
T Consensus 453 s~n~l~~~~~~~---~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~ 529 (635)
T 4g8a_A 453 SHTHTRVAFNGI---FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529 (635)
T ss_dssp TTSCCEECCTTT---TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cccccccccccc---cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence 999887665543 4678899999999998543 467788999999999999999998889999999999999999999
Q ss_pred CCCCcchhhcCCCCCCeEEccCCcccCCccCccccc
Q 037679 655 LSGRIPVEISNLTQLQSLQLSSNQLEGSVPSSIFEL 690 (693)
Q Consensus 655 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~ 690 (693)
+.+..+..|..+++|++||+++|++.+..|+.+..+
T Consensus 530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 998888899999999999999999998888887655
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-37 Score=348.97 Aligned_cols=427 Identities=22% Similarity=0.327 Sum_probs=269.1
Q ss_pred CCccEEEcccccccCccchhhccCCCCcEEEccCCcCC------C---------------------------CCCcccc-
Q 037679 4 NKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLE------G---------------------------SVPSSIF- 49 (693)
Q Consensus 4 ~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~------~---------------------------~~~~~~~- 49 (693)
.+++.|+++++.+++.+|.+|..+++|++|++++|.+. + ..+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 36889999999999999999999999999999999641 0 0000111
Q ss_pred ------------------CCCCCcEEECC--CCcCCCcccHHHHhhcCCCCCEEECCCCcCCch----------------
Q 037679 50 ------------------ELRNLQALDLS--NNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLL---------------- 93 (693)
Q Consensus 50 ------------------~l~~L~~L~Ls--~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~---------------- 93 (693)
....++.+.+. .|++++ +|.. +.++++|++|++++|.++..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA--VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG--GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHH--HhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 00112222221 455665 6655 77888888888888887763
Q ss_pred -hhhhhh-cCCCCCcEEeccCCCCC-chhhhhhcCCCccEEEcCCCC-CCC--CCCCccC------CCCCcEEeCCCCCC
Q 037679 94 -TRATLN-TNLPNFTVIGFNSCNLS-EFPYFLHNQDELVSLDLSSNK-IAG--QDLLVLP------WSKMNTLDLGFNKL 161 (693)
Q Consensus 94 -~~~~~~-~~l~~L~~L~l~~~~l~-~~~~~l~~l~~L~~L~L~~~~-~~~--~~~~~~~------~~~L~~L~l~~n~~ 161 (693)
.|..+. .++++|++|++++|.+. .+|..++++++|++|++++|. ++. ++..... +++|++|++++|.+
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 444432 26788888888888755 677778888888888888887 663 2222223 37788888888887
Q ss_pred CCCCCC----CCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCC-ccEEEccCCcCCCce
Q 037679 162 QGPLPV----PSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTN-LMMIDFSNNSLQGRA 236 (693)
Q Consensus 162 ~~~~~~----~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~-L~~L~l~~n~l~~~~ 236 (693)
+ .++. ..+++|++|++++|.+.+..| .+..++ +|+.|++++|.+. ..|..+..+++ |++|++++|+++
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~--- 390 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK--- 390 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS---
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc---
Confidence 7 4443 478889999999998886677 788888 8999999999888 44556888888 999999988875
Q ss_pred eeecccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceecccccc
Q 037679 237 LILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADY 316 (693)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (693)
.++.......+++|+.|++++|++.+..|..+.......
T Consensus 391 ----------~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~------------------------------- 429 (636)
T 4eco_A 391 ----------YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP------------------------------- 429 (636)
T ss_dssp ----------SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC-------------------------------
T ss_pred ----------ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc-------------------------------
Confidence 344444333455899999999988866664321000000
Q ss_pred ceeecCCCchhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCCc
Q 037679 317 SLTMSNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLC 396 (693)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~ 396 (693)
.....++.|++++|.+....+..+..+++|++|++++|.++ .+|..
T Consensus 430 --------------~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~------------------ 475 (636)
T 4eco_A 430 --------------FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT--EIPKN------------------ 475 (636)
T ss_dssp --------------CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS--BCCSS------------------
T ss_pred --------------ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC--CcCHH------------------
Confidence 00123556666666666332333445666666666666654 22221
Q ss_pred CCCccccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcccccccccCCe
Q 037679 397 GEPLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLED 476 (693)
Q Consensus 397 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 476 (693)
.+. ...+.+..+++|++
T Consensus 476 -----------------------------------------------~~~----------------~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 476 -----------------------------------------------SLK----------------DENENFKNTYLLTS 492 (636)
T ss_dssp -----------------------------------------------SSE----------------ETTEECTTGGGCCE
T ss_pred -----------------------------------------------Hhc----------------cccccccccCCccE
Confidence 000 00001122335566
Q ss_pred eEecccccCCCchhhhh--cCCCCcEEeccCCcccccccccccccCCCcEEEe------eCCcCCCCccccccCCccccE
Q 037679 477 LRLSYTRFSGKIPDSIE--NLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYL------SGNRFLDELPTSIGNLASLKA 548 (693)
Q Consensus 477 L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l------~~~~l~~~~~~~~~~l~~L~~ 548 (693)
|++++|.++ ..+..+. .+++|+.|++++|.++. +|..+..+++|++|++ ++|.+.+..|..+..+++|++
T Consensus 493 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~ 570 (636)
T 4eco_A 493 IDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570 (636)
T ss_dssp EECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred EECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCE
Confidence 666666655 3444443 66666666666666654 5556666666666666 345555666666666777777
Q ss_pred EEecCccccccchhccCCCCCCcEEecccCCCCcc
Q 037679 549 LEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRL 583 (693)
Q Consensus 549 L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~ 583 (693)
|++++|++.. .+..+. ++|+.|++++|++...
T Consensus 571 L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 571 LQIGSNDIRK-VNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp EECCSSCCCB-CCSCCC--TTCCEEECCSCTTCEE
T ss_pred EECCCCcCCc-cCHhHh--CcCCEEECcCCCCccc
Confidence 7777776633 333333 5677777777766544
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.6e-37 Score=352.12 Aligned_cols=398 Identities=17% Similarity=0.196 Sum_probs=216.8
Q ss_pred CCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCC----CCCCCCCCCCCCCCEEeCCCCCCCCCcc
Q 037679 113 CNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNK----LQGPLPVPSLNGLQALDLSYNNLSGMLP 188 (693)
Q Consensus 113 ~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~----~~~~~~~~~l~~L~~L~L~~~~i~~~~~ 188 (693)
|+++.+|..++++++|++|++++|.++...+..... ..+.|. ++..+.+..+++|+.|++++|.+.+..|
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~------~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP 508 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWE------DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCS------CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCccccccc------ccccccccccCChhhhhccCCCCCEEECcCCCCCccCh
Confidence 566668888889999999999998888611110000 000000 1111111145566666666666655666
Q ss_pred cccccccccccEEEccccc-ccc-cccccccC-------CCCccEEEccCCcCCCceeeecccccCCCCCCCccCCCCCC
Q 037679 189 ECLGNFSVELSALKLQANN-FYR-IVPQTFMN-------GTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPK 259 (693)
Q Consensus 189 ~~~~~~~~~L~~L~L~~~~-i~~-~~~~~~~~-------~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 259 (693)
..+..++ +|+.|++++|+ +.. ..|..+.. +++|++|++++|+++ .+|....+.++++
T Consensus 509 ~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-------------~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 509 DFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-------------EFPASASLQKMVK 574 (876)
T ss_dssp GGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-------------BCCCHHHHTTCTT
T ss_pred HHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-------------ccCChhhhhcCCC
Confidence 6666666 66666666665 544 33433332 336666666666653 2222112355666
Q ss_pred ceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceeecCCCchhhhhhhhhhhhhe
Q 037679 260 LRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKGTEIEYLKLSNLIAAI 339 (693)
Q Consensus 260 L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 339 (693)
|+.|++++|+++ .+| .+..+ +.|+.|
T Consensus 575 L~~L~Ls~N~l~-~lp--~~~~L---------------------------------------------------~~L~~L 600 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE--AFGTN---------------------------------------------------VKLTDL 600 (876)
T ss_dssp CCEEECTTSCCC-BCC--CCCTT---------------------------------------------------SEESEE
T ss_pred CCEEECCCCCcc-cch--hhcCC---------------------------------------------------CcceEE
Confidence 666666666655 444 12211 234555
Q ss_pred eecCCcccccCChhhhcCCC-CCeeeCccccccCCCCCCCCcccccccCcccCCCCCcCCCccccCCCCCCCCCCCCCCc
Q 037679 340 IISDKNFVGEIPTSISSLKG-LRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLCGEPLSRKCGNSEASPVEDDPPS 418 (693)
Q Consensus 340 ~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~ 418 (693)
++++|.+. .+|.++..+++ |++|++++|.++ .+|.
T Consensus 601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~----------------------------------------- 636 (876)
T 4ecn_A 601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK--YIPN----------------------------------------- 636 (876)
T ss_dssp ECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC--SCCS-----------------------------------------
T ss_pred ECcCCccc-cchHHHhhccccCCEEECcCCCCC--cCch-----------------------------------------
Confidence 55555555 55556666776 777777777765 2221
Q ss_pred ccccccceEEEEecCCCcccccCccccC--CCCcceeecccCCCcCCCccccc------ccccCCeeEecccccCCCchh
Q 037679 419 ESVLAFGWKIVLAGGCGLQGEFPQEIFQ--LPNLQFLGVMKNPNLTGYLPQFQ------KSSLLEDLRLSYTRFSGKIPD 490 (693)
Q Consensus 419 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~ 490 (693)
.+.. .++|+.|++++|. +....+.+. ..++|+.|++++|.+......
T Consensus 637 ------------------------~~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~ 691 (876)
T 4ecn_A 637 ------------------------IFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691 (876)
T ss_dssp ------------------------CCCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHH
T ss_pred ------------------------hhhccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCCcCCccCHH
Confidence 1111 2336666666663 222222211 223556666666666533333
Q ss_pred hhhcCCCCcEEeccCCccccccccc-cc-------ccCCCcEEEeeCCcCCCCcccccc--CCccccEEEecCccccccc
Q 037679 491 SIENLESLSYLGISDCSFIGKIPSS-LF-------NLTKLEHLYLSGNRFLDELPTSIG--NLASLKALEISSFNFSSTL 560 (693)
Q Consensus 491 ~~~~l~~L~~L~l~~~~~~~~~~~~-~~-------~l~~L~~L~l~~~~l~~~~~~~~~--~l~~L~~L~l~~~~~~~~~ 560 (693)
.+..+++|+.|++++|.+. .+|.. +. ++++|++|++++|++. .+|..+. .+++|+.|++++|++.+ .
T Consensus 692 ~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-l 768 (876)
T 4ecn_A 692 LFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F 768 (876)
T ss_dssp HHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred HHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-c
Confidence 3345566666666666555 22222 11 1124555555555543 3333333 44555555555555444 2
Q ss_pred hhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCcccccc
Q 037679 561 QASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLM 640 (693)
Q Consensus 561 ~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 640 (693)
+..+..+++|+.|++++|. ++++|.+.+.+|..+.++++|++|++++|.+ +.+|..+.
T Consensus 769 p~~l~~L~~L~~L~Ls~N~---------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 769 PTQPLNSSQLKAFGIRHQR---------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp CCGGGGCTTCCEEECCCCB---------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred chhhhcCCCCCEEECCCCC---------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 3334444445555544442 2234777777888888888999999998888 46776655
Q ss_pred CcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCccc
Q 037679 641 KLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLE 680 (693)
Q Consensus 641 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 680 (693)
++|+.|++++|++....+..+.....+..+.+.+|+..
T Consensus 827 --~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 827 --PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp --SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred --CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 68889999999887666555555445556666666544
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-36 Score=346.31 Aligned_cols=299 Identities=21% Similarity=0.290 Sum_probs=205.9
Q ss_pred CCccEEEcccccccCccchhhccCCCCcEEEc-cCCcCCCCCCcc-----------------------------------
Q 037679 4 NKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRL-AENQLEGSVPSS----------------------------------- 47 (693)
Q Consensus 4 ~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~l-s~n~i~~~~~~~----------------------------------- 47 (693)
.+++.|+|+++.+.+.+|.+|+.+++|++|++ ++|.+++..+-.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46889999999999999999999999999999 777654331100
Q ss_pred --------------c--cCCCCCcEEECC--CCcCCCcccHHHHhhcCCCCCEEECCCCcCCc-----------------
Q 037679 48 --------------I--FELRNLQALDLS--NNNLSGTVDLNMLLLNLKSLTALVLSSNKLSL----------------- 92 (693)
Q Consensus 48 --------------~--~~l~~L~~L~Ls--~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~----------------- 92 (693)
+ .+...++.+.++ .|.+.+ +|.. +.++++|++|+|++|.++.
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~--l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKA--IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG--GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHH--HhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 0 111223333333 255655 6655 7888888888888888876
Q ss_pred hhhhhh-hcCCCCCcEEeccCCCCC-chhhhhhcCCCccEEEcCCCC-CCC--CCCC-------ccCCCCCcEEeCCCCC
Q 037679 93 LTRATL-NTNLPNFTVIGFNSCNLS-EFPYFLHNQDELVSLDLSSNK-IAG--QDLL-------VLPWSKMNTLDLGFNK 160 (693)
Q Consensus 93 ~~~~~~-~~~l~~L~~L~l~~~~l~-~~~~~l~~l~~L~~L~L~~~~-~~~--~~~~-------~~~~~~L~~L~l~~n~ 160 (693)
..|..+ ..++++|+.|++++|.+. .+|..++++++|++|++++|. ++. ++.. ...+++|+.|++++|.
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 244442 126888888888888755 777788888888888888887 654 2221 1245588888888888
Q ss_pred CCCCCCC----CCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCC-ccEEEccCCcCCCc
Q 037679 161 LQGPLPV----PSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTN-LMMIDFSNNSLQGR 235 (693)
Q Consensus 161 ~~~~~~~----~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~-L~~L~l~~n~l~~~ 235 (693)
+. .++. ..+++|+.|++++|.++ ..| .+..++ +|+.|++++|.+. ..|..+..+++ |++|++++|+++
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-- 632 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-- 632 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS-EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC--
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC-cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC--
Confidence 88 4443 47888888888888888 556 788888 8899999988888 55566778888 999999888875
Q ss_pred eeeecccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccc
Q 037679 236 ALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYAD 315 (693)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (693)
.++........++|+.|++++|++.+.+|.. ...+..+
T Consensus 633 -----------~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l-~~~l~~~------------------------------ 670 (876)
T 4ecn_A 633 -----------YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI-SCSMDDY------------------------------ 670 (876)
T ss_dssp -----------SCCSCCCTTCSSCEEEEECCSSCTTTTSSSC-SSCTTTC------------------------------
T ss_pred -----------cCchhhhccccCCCCEEECcCCcCCCccccc-hhhhccc------------------------------
Confidence 2343332233445899999999888655431 0000000
Q ss_pred cceeecCCCchhhhhhhhhhhhheeecCCcccccCChh-hhcCCCCCeeeCcccccc
Q 037679 316 YSLTMSNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTS-ISSLKGLRTLSLSNNNLR 371 (693)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~ 371 (693)
....|+.|++++|.+. .+|.. +..+++|++|++++|.+.
T Consensus 671 ----------------~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 671 ----------------KGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp ----------------CCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred ----------------cCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 0134677788888777 44444 447888888888888876
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.6e-34 Score=319.94 Aligned_cols=212 Identities=24% Similarity=0.317 Sum_probs=160.8
Q ss_pred cCCeeEecccccCCCchhhh-----hcCCCCcEEeccCCccccccc-cccc---ccCCCcEEEeeCCcCCCCccccccCC
Q 037679 473 LLEDLRLSYTRFSGKIPDSI-----ENLESLSYLGISDCSFIGKIP-SSLF---NLTKLEHLYLSGNRFLDELPTSIGNL 543 (693)
Q Consensus 473 ~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~-~~~~---~l~~L~~L~l~~~~l~~~~~~~~~~l 543 (693)
+|++|++++|.+.+..+..+ ..+..|+.+++..+.+ ..| ..+. ...+|++|++++|.+.... ....+
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l 352 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSP 352 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCC
Confidence 45556666665554444443 4445555555555443 222 2222 2367999999999874332 12678
Q ss_pred ccccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCccc-ccccCCCCCC
Q 037679 544 ASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIP-FGISNLTQLT 622 (693)
Q Consensus 544 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~ 622 (693)
++|++|++++|.+.+..+..+..+++|+.|++++|.+..... ....+..+++|++|++++|.+++.+| ..+..+++|+
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK-VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH-HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc-chhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 999999999999998888889999999999999999886432 11236789999999999999997455 4578899999
Q ss_pred EEEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCccCc-cccccCC
Q 037679 623 ALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVPSS-IFELRNL 693 (693)
Q Consensus 623 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~~l 693 (693)
+|++++|.+++..|..++ ++|+.|++++|++. .+|..+..+++|++|++++|.+. .+|+. +..+++|
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 499 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL 499 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTC
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCC
Confidence 999999999877776654 79999999999998 78888889999999999999999 78876 6666543
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.4e-33 Score=301.46 Aligned_cols=388 Identities=20% Similarity=0.201 Sum_probs=237.5
Q ss_pred cEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCccc-HHHHhhcCCCCCEEEC
Q 037679 7 STLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVD-LNMLLLNLKSLTALVL 85 (693)
Q Consensus 7 ~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~l~~L~~L~L 85 (693)
+.++.++++++ .+|. + .++|++|++++|.+++..+.+|.++++|++|++++|.+.+.++ .. |.++++|++|++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~--~~~l~~L~~L~L 86 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT--FRGLSSLIILKL 86 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTT--TTTCTTCCEEEC
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccc--ccccccCCEEeC
Confidence 46777888877 4454 3 3789999999999988888899999999999999998875553 34 788999999999
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCc-hhhh--hhcCCCccEEEcCCCCCCCCCCC--ccCCCCCcEEeCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSE-FPYF--LHNQDELVSLDLSSNKIAGQDLL--VLPWSKMNTLDLGFNK 160 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~--l~~l~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~l~~n~ 160 (693)
++|.+....+..+. ++++|++|++++|+++. ++.. ++.+++|++|++++|.++..... ..++++|++|++++|.
T Consensus 87 s~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 87 DYNQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TTCTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CCCccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 99999888888887 89999999999999884 3443 88888999999999888875333 2255666666666665
Q ss_pred CCCCCCCC----CCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCce
Q 037679 161 LQGPLPVP----SLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRA 236 (693)
Q Consensus 161 ~~~~~~~~----~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 236 (693)
+.+..+.. ..++|+.|++++|.+.+..+..+... ....+..+++|++|++++|+++.
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~-----------------~~~~~~~~~~L~~L~Ls~n~l~~-- 226 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE-----------------KCGNPFKNTSITTLDLSGNGFKE-- 226 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH-----------------HHCCTTTTCEEEEEECTTSCCCH--
T ss_pred ccccChhhhhccccccccccccccCcccccchhhcccc-----------------ccccccccceeeeEecCCCcccc--
Confidence 55432221 12344555555555443322221100 00011234455555555555431
Q ss_pred eeecccccCCCCCCCc-cCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccc
Q 037679 237 LILKFNNFHGEIEEPQ-TGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYAD 315 (693)
Q Consensus 237 ~~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (693)
..+... ......+|+.+++++|...+..... ..+......
T Consensus 227 ----------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~--------------------------- 267 (455)
T 3v47_A 227 ----------SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH--TNFKDPDNF--------------------------- 267 (455)
T ss_dssp ----------HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC--CSSCCCCTT---------------------------
T ss_pred ----------cchhhhhccccccceeeEeeccccccccccch--hhhccCccc---------------------------
Confidence 011100 0012345666666666544211100 000000000
Q ss_pred cceeecCCCchhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCC
Q 037679 316 YSLTMSNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGL 395 (693)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l 395 (693)
.+.. .....++.+++++|.+.+..+.+++.+++|++|++++|.+.
T Consensus 268 ----------~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------------ 312 (455)
T 3v47_A 268 ----------TFKG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN------------------------ 312 (455)
T ss_dssp ----------TTGG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC------------------------
T ss_pred ----------cccc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc------------------------
Confidence 0000 00122344444444444444444444444444444444433
Q ss_pred cCCCccccCCCCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcccccccccCC
Q 037679 396 CGEPLSRKCGNSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLE 475 (693)
Q Consensus 396 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 475 (693)
......|..+++|+
T Consensus 313 ------------------------------------------------------------------~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 313 ------------------------------------------------------------------KIDDNAFWGLTHLL 326 (455)
T ss_dssp ------------------------------------------------------------------EECTTTTTTCTTCC
T ss_pred ------------------------------------------------------------------ccChhHhcCcccCC
Confidence 22223455666677
Q ss_pred eeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCcc
Q 037679 476 DLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFN 555 (693)
Q Consensus 476 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 555 (693)
+|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++|++.+..+..+..+++|+.|++++|+
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 77777777766666777778888888888888777777778888888888888888876666667778888888888888
Q ss_pred ccccc
Q 037679 556 FSSTL 560 (693)
Q Consensus 556 ~~~~~ 560 (693)
+.+..
T Consensus 407 l~~~~ 411 (455)
T 3v47_A 407 WDCSC 411 (455)
T ss_dssp BCCCT
T ss_pred cccCC
Confidence 77653
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-32 Score=298.84 Aligned_cols=139 Identities=26% Similarity=0.337 Sum_probs=109.2
Q ss_pred CccccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCC
Q 037679 543 LASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLT 622 (693)
Q Consensus 543 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 622 (693)
.++|+.|++++|.+.+..+..+..+++|++|++++|.+....+.. +..+++|++|++++|.+.+..+..+..+++|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA---FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT---TTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH---hcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence 367888888888877777777778888888888888777654432 45677888888888888766677778888888
Q ss_pred EEEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCcc
Q 037679 623 ALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 623 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 684 (693)
+|++++|.+++..|..+.++++|+.|++++|++.+..+..+..+++|++|++++|++.+.+|
T Consensus 351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 88888888876777788888888888888888886555667888888888888888888877
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-33 Score=303.93 Aligned_cols=176 Identities=22% Similarity=0.281 Sum_probs=72.7
Q ss_pred ccCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCC-ccccEEE
Q 037679 472 SLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNL-ASLKALE 550 (693)
Q Consensus 472 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l-~~L~~L~ 550 (693)
++|++|++++|.+.+. +. ..++|++|++++|.++.. +. -.++|++|++++|.+.+ +..+ ++|++|+
T Consensus 257 ~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~ 323 (454)
T 1jl5_A 257 PSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-----LCDLPPSLEELN 323 (454)
T ss_dssp TTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-----ECCCCTTCCEEE
T ss_pred cccCEEECCCCccccc-Cc---ccCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-----ccCCcCcCCEEE
Confidence 3566667766666642 22 136777888887776542 11 12567777777777643 1222 4677777
Q ss_pred ecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCC--cccccccCCCCCCEEEccC
Q 037679 551 ISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNN--EIPFGISNLTQLTALDLSY 628 (693)
Q Consensus 551 l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~ 628 (693)
+++|++.+.. . .+++|+.|++++|.+...+. .+++|++|++++|++++ .+|.+ +..|. .
T Consensus 324 Ls~N~l~~lp-~---~~~~L~~L~L~~N~l~~lp~-------~l~~L~~L~L~~N~l~~l~~ip~~------l~~L~--~ 384 (454)
T 1jl5_A 324 VSNNKLIELP-A---LPPRLERLIASFNHLAEVPE-------LPQNLKQLHVEYNPLREFPDIPES------VEDLR--M 384 (454)
T ss_dssp CCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSSCCCCCTT------CCEEE--C
T ss_pred CCCCcccccc-c---cCCcCCEEECCCCccccccc-------hhhhccEEECCCCCCCcCCCChHH------HHhhh--h
Confidence 7777766532 2 24667777777776664332 24667777777777665 33332 22322 2
Q ss_pred CccCCCccccccCcCcccEEeccCccCCC--CcchhhcCCCCCCeEEccCCcccCCccCccc
Q 037679 629 NQLTGPIPYSLMKLKKVSSLLLGFNQLSG--RIPVEISNLTQLQSLQLSSNQLEGSVPSSIF 688 (693)
Q Consensus 629 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 688 (693)
|...+.+|.. +++|+.|++++|++++ .+|. +++.|++.+|.+.+.+|-+..
T Consensus 385 n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 385 NSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp CC------------------------------------------------------------
T ss_pred cccccccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHH
Confidence 3344344432 3678888888888875 3443 466777788877766664443
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.2e-33 Score=302.06 Aligned_cols=179 Identities=23% Similarity=0.252 Sum_probs=86.8
Q ss_pred CCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEe
Q 037679 448 PNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYL 527 (693)
Q Consensus 448 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 527 (693)
++|++|++++|. +.. .+. ..++|++|++++|.+++.. . ..++|++|++++|.++.. +. -.++|++|++
T Consensus 257 ~~L~~L~l~~N~-l~~-l~~--~~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~L 324 (454)
T 1jl5_A 257 PSLEALNVRDNY-LTD-LPE--LPQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSL-CD---LPPSLEELNV 324 (454)
T ss_dssp TTCCEEECCSSC-CSC-CCC--CCTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEE-CC---CCTTCCEEEC
T ss_pred cccCEEECCCCc-ccc-cCc--ccCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCcc-cC---CcCcCCEEEC
Confidence 566666666663 222 222 2356888888888877421 1 126899999999987742 21 1258999999
Q ss_pred eCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCC
Q 037679 528 SGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNL 607 (693)
Q Consensus 528 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l 607 (693)
++|++.+ .|.. +++|+.|++++|.++... . .+++|++|++++|.+...+.. ...+..| +.|..
T Consensus 325 s~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp-~---~l~~L~~L~L~~N~l~~l~~i-------p~~l~~L--~~n~~ 387 (454)
T 1jl5_A 325 SNNKLIE-LPAL---PPRLERLIASFNHLAEVP-E---LPQNLKQLHVEYNPLREFPDI-------PESVEDL--RMNSH 387 (454)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSSCCCC-------CTTCCEE--ECCC-
T ss_pred CCCcccc-cccc---CCcCCEEECCCCcccccc-c---hhhhccEEECCCCCCCcCCCC-------hHHHHhh--hhccc
Confidence 9999865 4443 589999999999988643 3 478999999999998863210 0123443 34555
Q ss_pred CCcccccccCCCCCCEEEccCCccCC--CccccccCcCcccEEeccCccCCCCcchhhc
Q 037679 608 NNEIPFGISNLTQLTALDLSYNQLTG--PIPYSLMKLKKVSSLLLGFNQLSGRIPVEIS 664 (693)
Q Consensus 608 ~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 664 (693)
.+.+|. .+++|+.|++++|.+.+ .+| .+++.|.+.+|.+.+..+.+..
T Consensus 388 ~~~i~~---~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 388 LAEVPE---LPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp -----------------------------------------------------------
T ss_pred cccccc---ccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccccCHH
Confidence 555554 35899999999999985 233 4678888899888766555443
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.4e-31 Score=286.02 Aligned_cols=344 Identities=24% Similarity=0.344 Sum_probs=215.6
Q ss_pred CCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCC
Q 037679 103 PNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNN 182 (693)
Q Consensus 103 ~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~ 182 (693)
++++.|++.++.++.+|. ++.+++|++|++++|.++.++. ...+++|++|++++|.+.+..++..+++|++|++++|.
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 123 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred ccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCC
Confidence 344444444444444332 3444444444444444444222 23444444444444444444445566677777777777
Q ss_pred CCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecccccCCCCCCCccCCCCCCceE
Q 037679 183 LSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRI 262 (693)
Q Consensus 183 i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~ 262 (693)
+.+..+ +..++ +|++|++++|.+..+. .+..+++|++|++++ .+. + ...+..+++|+.
T Consensus 124 l~~~~~--~~~l~-~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~-~~~------------~----~~~~~~l~~L~~ 181 (466)
T 1o6v_A 124 ITDIDP--LKNLT-NLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVT------------D----LKPLANLTTLER 181 (466)
T ss_dssp CCCCGG--GTTCT-TCSEEEEEEEEECCCG--GGTTCTTCSEEEEEE-SCC------------C----CGGGTTCTTCCE
T ss_pred CCCChH--HcCCC-CCCEEECCCCccCCCh--hhccCCcccEeecCC-ccc------------C----chhhccCCCCCE
Confidence 665432 66677 7777777777776643 366777777777753 221 0 111356777777
Q ss_pred EecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceeecCCCchhhhhhhhhhhhheeec
Q 037679 263 IDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKGTEIEYLKLSNLIAAIIIS 342 (693)
Q Consensus 263 L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 342 (693)
|++++|++.+ +
T Consensus 182 L~l~~n~l~~-~-------------------------------------------------------------------- 192 (466)
T 1o6v_A 182 LDISSNKVSD-I-------------------------------------------------------------------- 192 (466)
T ss_dssp EECCSSCCCC-C--------------------------------------------------------------------
T ss_pred EECcCCcCCC-C--------------------------------------------------------------------
Confidence 7777776541 0
Q ss_pred CCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCCcCCCccccCCCCCCCCCCCCCCccccc
Q 037679 343 DKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLCGEPLSRKCGNSEASPVEDDPPSESVL 422 (693)
Q Consensus 343 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~ 422 (693)
..+..+++|++|++++|.+..
T Consensus 193 ---------~~l~~l~~L~~L~l~~n~l~~-------------------------------------------------- 213 (466)
T 1o6v_A 193 ---------SVLAKLTNLESLIATNNQISD-------------------------------------------------- 213 (466)
T ss_dssp ---------GGGGGCTTCSEEECCSSCCCC--------------------------------------------------
T ss_pred ---------hhhccCCCCCEEEecCCcccc--------------------------------------------------
Confidence 123455666666666666542
Q ss_pred ccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCCcEEe
Q 037679 423 AFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLG 502 (693)
Q Consensus 423 ~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 502 (693)
.+ .+..+++|++|++++|. ++. .+.+..+++|+.|++++|.+.+..+ +..+++|++|+
T Consensus 214 -----------------~~-~~~~l~~L~~L~l~~n~-l~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 271 (466)
T 1o6v_A 214 -----------------IT-PLGILTNLDELSLNGNQ-LKD-IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 271 (466)
T ss_dssp -----------------CG-GGGGCTTCCEEECCSSC-CCC-CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred -----------------cc-cccccCCCCEEECCCCC-ccc-chhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEE
Confidence 00 12335666666666663 222 2456677788888888888875443 77788888888
Q ss_pred ccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCcEEecccCCCCc
Q 037679 503 ISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSR 582 (693)
Q Consensus 503 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~ 582 (693)
+++|.+....+ +..+++|++|++++|++.+..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|.+.+
T Consensus 272 l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 272 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 88887765433 7778888888888888755433 6678888888888888776643 6677888888888887775
Q ss_pred cccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCC
Q 037679 583 LMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTG 633 (693)
Q Consensus 583 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 633 (693)
. +.+..+++|++|++++|++++..| +..+++|++|++++|.+++
T Consensus 346 ~-----~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 346 V-----SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp C-----GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred c-----hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 4 235677888888888888876655 6778888888888887764
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.1e-31 Score=287.00 Aligned_cols=195 Identities=24% Similarity=0.350 Sum_probs=131.2
Q ss_pred ccCCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCc
Q 037679 444 IFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLE 523 (693)
Q Consensus 444 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 523 (693)
+..+++|++|++++|. +... +.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+....+ +..+++|+
T Consensus 195 l~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQ-ISDI-TPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp GGGCTTCSEEECCSSC-CCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred hccCCCCCEEEecCCc-cccc-ccccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 4456778888888774 3332 2266677777777777777643 356677777777777777664433 66777777
Q ss_pred EEEeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEcc
Q 037679 524 HLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFP 603 (693)
Q Consensus 524 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~ 603 (693)
+|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|+++
T Consensus 269 ~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 269 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFY 339 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECC
T ss_pred EEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-----hccCccCCEeECC
Confidence 77777777654433 6667777777777777665432 6667777777777777665433 4566777777777
Q ss_pred CCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCCC
Q 037679 604 YCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSG 657 (693)
Q Consensus 604 ~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 657 (693)
+|++++. ..+..+++|+.|++++|.+++..| +..+++|+.|++++|++.+
T Consensus 340 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 7777643 346677777777777777765555 5667777777777777764
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2e-31 Score=287.04 Aligned_cols=218 Identities=23% Similarity=0.302 Sum_probs=170.6
Q ss_pred ccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhh
Q 037679 16 LTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTR 95 (693)
Q Consensus 16 l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 95 (693)
.....+..+..+++|++|++++|.+++. | +|.++++|++|++++|++.+. + +..+++|++|++++|.++...
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~----~~~l~~L~~L~Ls~N~l~~~~- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D----LSQNTNLTYLACDSNKLTNLD- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C----CTTCTTCSEEECCSSCCSCCC-
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c----cccCCCCCEEECcCCCCceee-
Confidence 3444555677888888888888888854 4 688888888888888887764 3 677888888888888887652
Q ss_pred hhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCE
Q 037679 96 ATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQA 175 (693)
Q Consensus 96 ~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~ 175 (693)
+. ++++|++|++++|+++.++ ++.+++|++|++++|.++.+ ....+++|++|++++|...+..++..+++|++
T Consensus 102 --~~-~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~ 174 (457)
T 3bz5_A 102 --VT-PLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLDVTPQTQLTT 174 (457)
T ss_dssp --CT-TCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCE
T ss_pred --cC-CCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCcccccccccCCcCCE
Confidence 55 7888888888888888775 78888888888888888874 35578888888888886555667778888888
Q ss_pred EeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecccccCCCCCCCccCC
Q 037679 176 LDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGF 255 (693)
Q Consensus 176 L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~ 255 (693)
|++++|.++++ + +..++ +|+.|++++|.++.+ .+..+++|++|++++|++++ ++ +.
T Consensus 175 L~ls~n~l~~l-~--l~~l~-~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-------------ip----~~ 230 (457)
T 3bz5_A 175 LDCSFNKITEL-D--VSQNK-LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-------------ID----VT 230 (457)
T ss_dssp EECCSSCCCCC-C--CTTCT-TCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-------------CC----CT
T ss_pred EECCCCcccee-c--cccCC-CCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-------------cC----cc
Confidence 88888888864 3 77778 888888888888876 37778888889888888752 22 35
Q ss_pred CCCCceEEecCCCcccC
Q 037679 256 EFPKLRIIDLSHNRFTG 272 (693)
Q Consensus 256 ~~~~L~~L~l~~~~~~~ 272 (693)
.+++|+.|++++|++++
T Consensus 231 ~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp TCTTCSEEECCSSCCSC
T ss_pred ccCCCCEEEeeCCcCCC
Confidence 68888888888888874
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=2.5e-31 Score=286.36 Aligned_cols=198 Identities=22% Similarity=0.264 Sum_probs=161.2
Q ss_pred CcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCc
Q 037679 38 NQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSE 117 (693)
Q Consensus 38 n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 117 (693)
.......+..+.++++|++|++++|.+.+. + . +..+++|++|++++|.++... +. .+++|++|++++|+++.
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~--l~~l~~L~~L~Ls~n~l~~~~---~~-~l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITDM-T-G--IEKLTGLTKLICTSNNITTLD---LS-QNTNLTYLACDSNKLTN 99 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-T--GGGCTTCSEEECCSSCCSCCC---CT-TCTTCSEEECCSSCCSC
T ss_pred cCcCcccccChhHcCCCCEEEccCCCcccC-h-h--hcccCCCCEEEccCCcCCeEc---cc-cCCCCCEEECcCCCCce
Confidence 334444566788899999999999998865 3 4 788999999999999888753 55 88999999999999998
Q ss_pred hhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCccccccccccc
Q 037679 118 FPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVE 197 (693)
Q Consensus 118 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~ 197 (693)
++ ++++++|++|++++|.++.++ ...+++|++|++++|.+++ .++..+++|++|++++|...+.. .+..++ +
T Consensus 100 ~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~-~ 171 (457)
T 3bz5_A 100 LD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKL--DVTPQT-Q 171 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCC--CCTTCT-T
T ss_pred ee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCccccc--ccccCC-c
Confidence 75 889999999999999998753 5688899999999999986 46778999999999999544333 477788 8
Q ss_pred ccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecccccCCCCCCCccCCCCCCceEEecCCCccc
Q 037679 198 LSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271 (693)
Q Consensus 198 L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (693)
|+.|++++|.++.++ +..+++|++|++++|+++. . .+..+++|+.|++++|+++
T Consensus 172 L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~-------------~----~l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 172 LTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITK-------------L----DLNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp CCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSC-------------C----CCTTCTTCSEEECCSSCCS
T ss_pred CCEEECCCCccceec---cccCCCCCEEECcCCcCCe-------------e----ccccCCCCCEEECcCCccc
Confidence 999999999998864 7788999999999998862 1 2466888999999998877
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=8.1e-30 Score=278.03 Aligned_cols=184 Identities=22% Similarity=0.241 Sum_probs=108.4
Q ss_pred ccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEE
Q 037679 470 KSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKAL 549 (693)
Q Consensus 470 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 549 (693)
.+++|++|++++|.+++..+..+..+++|+.|++.+|.+....+..+..+++|++|++++|...+..+.......+|++|
T Consensus 150 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229 (477)
T ss_dssp TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEE
Confidence 33444555555555544444455555666666666655555544555566666666666665544444444344466666
Q ss_pred EecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCC
Q 037679 550 EISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYN 629 (693)
Q Consensus 550 ~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n 629 (693)
++++|.+.......+..+++|+.|++++|.+....+.. +..+++|++|++++|.+++..+..+.++++|+.|++++|
T Consensus 230 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM---LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp EEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS---CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred ECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh---ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 66666665555455666666666666666665443322 345566666666666666555666666667777777776
Q ss_pred ccCCCccccccCcCcccEEeccCccCC
Q 037679 630 QLTGPIPYSLMKLKKVSSLLLGFNQLS 656 (693)
Q Consensus 630 ~l~~~~~~~l~~l~~L~~L~l~~n~~~ 656 (693)
.+++..+..|..+++|+.|++++|++.
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cCceeCHhHcCCCcccCEEEccCCCcc
Confidence 666555555666666777777766665
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.4e-28 Score=256.70 Aligned_cols=195 Identities=25% Similarity=0.362 Sum_probs=110.5
Q ss_pred hccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCC
Q 037679 24 IRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLP 103 (693)
Q Consensus 24 ~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~ 103 (693)
+..+++|++|+++++.+.++ + ++..+++|++|++++|++.+..+ +..+++|++|++++|.++... .+. .++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~L~~n~i~~~~--~~~-~l~ 110 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTNKITDIS--ALQ-NLT 110 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCG--GGT-TCT
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh----hhcCCcCCEEEccCCcccCch--HHc-CCC
Confidence 44566677777777666633 2 36666777777777766654433 566666777777766665532 344 666
Q ss_pred CCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCC
Q 037679 104 NFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNL 183 (693)
Q Consensus 104 ~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i 183 (693)
+|++|++++|.++.++. +..+++|++|++++|........ +..+++|++|++++|.+
T Consensus 111 ~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~----------------------~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP----------------------LSNMTGLNYLTVTESKV 167 (347)
T ss_dssp TCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG----------------------GTTCTTCCEEECCSSCC
T ss_pred cCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc----------------------hhhCCCCcEEEecCCCc
Confidence 66666666666666555 66666666666666644332222 23444555555555555
Q ss_pred CCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecccccCCCCCCCccCCCCCCceEE
Q 037679 184 SGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRII 263 (693)
Q Consensus 184 ~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L 263 (693)
.+..+ +..++ +|+.|++++|.+..+.+ +..+++|+.|++++|.+++ .+. +..+++|+.|
T Consensus 168 ~~~~~--~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-------------~~~---~~~~~~L~~L 226 (347)
T 4fmz_A 168 KDVTP--IANLT-DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD-------------ITP---VANMTRLNSL 226 (347)
T ss_dssp CCCGG--GGGCT-TCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-------------CGG---GGGCTTCCEE
T ss_pred CCchh--hccCC-CCCEEEccCCccccccc--ccCCCccceeecccCCCCC-------------Cch---hhcCCcCCEE
Confidence 43322 44555 56666666655554433 5555666666666665531 000 2456666666
Q ss_pred ecCCCccc
Q 037679 264 DLSHNRFT 271 (693)
Q Consensus 264 ~l~~~~~~ 271 (693)
++++|+++
T Consensus 227 ~l~~n~l~ 234 (347)
T 4fmz_A 227 KIGNNKIT 234 (347)
T ss_dssp ECCSSCCC
T ss_pred EccCCccC
Confidence 66666554
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.5e-28 Score=256.29 Aligned_cols=283 Identities=21% Similarity=0.357 Sum_probs=228.1
Q ss_pred CCCCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCC
Q 037679 2 NLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLT 81 (693)
Q Consensus 2 ~~~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~ 81 (693)
++++|++|+++++.+..+ + .+..+++|++|++++|.++++.+ |.++++|++|++++|.+.+.. . +.++++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~--~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--A--LQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--G--GTTCTTCS
T ss_pred hcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--H--HcCCCcCC
Confidence 367899999999999854 3 48999999999999999986544 999999999999999988642 3 89999999
Q ss_pred EEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCC
Q 037679 82 ALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKL 161 (693)
Q Consensus 82 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 161 (693)
+|++++|.+....+ +. .+++|+.|++++|.....+..++.+++|++|++++|.+..... ...+++|++|++++|.+
T Consensus 114 ~L~l~~n~i~~~~~--~~-~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LA-NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EEECTTSCCCCCGG--GT-TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC
T ss_pred EEECcCCcccCchh--hc-cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc
Confidence 99999999987665 55 9999999999999655444559999999999999999987443 56889999999999999
Q ss_pred CCCCCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecc
Q 037679 162 QGPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKF 241 (693)
Q Consensus 162 ~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~ 241 (693)
.+..++..+++|+.+++++|.+.+..+ +..++ +|+.|++++|.+....+ +..+++|++|++++|+++.
T Consensus 190 ~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~------- 257 (347)
T 4fmz_A 190 EDISPLASLTSLHYFTAYVNQITDITP--VANMT-RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD------- 257 (347)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-------
T ss_pred cccccccCCCccceeecccCCCCCCch--hhcCC-cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-------
Confidence 877667789999999999999986644 77888 99999999999988765 8889999999999998762
Q ss_pred cccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceeec
Q 037679 242 NNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMS 321 (693)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (693)
. ..+..+++|+.|++++|++++ ++ .+
T Consensus 258 ------~---~~~~~l~~L~~L~l~~n~l~~-~~--~~------------------------------------------ 283 (347)
T 4fmz_A 258 ------I---NAVKDLTKLKMLNVGSNQISD-IS--VL------------------------------------------ 283 (347)
T ss_dssp ------C---GGGTTCTTCCEEECCSSCCCC-CG--GG------------------------------------------
T ss_pred ------C---hhHhcCCCcCEEEccCCccCC-Ch--hh------------------------------------------
Confidence 1 124678899999999998763 11 01
Q ss_pred CCCchhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCcccccc
Q 037679 322 NKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLR 371 (693)
Q Consensus 322 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 371 (693)
..++.++.|++++|.+.+..+.+++.+++|++|++++|+++
T Consensus 284 ---------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 284 ---------NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp ---------GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred ---------cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 11244566777777766666666677777777777777655
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=4.4e-29 Score=272.18 Aligned_cols=238 Identities=24% Similarity=0.203 Sum_probs=208.2
Q ss_pred ccCCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCc
Q 037679 444 IFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLE 523 (693)
Q Consensus 444 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 523 (693)
+.++++|++|++++|.........|..+++|++|++++|.+.+..+..|.++++|+.|++++|.++...+..+..+++|+
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179 (477)
T ss_dssp STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC
T ss_pred ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCc
Confidence 45678899999998854444445688999999999999999877788899999999999999998877777899999999
Q ss_pred EEEeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEcc
Q 037679 524 HLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFP 603 (693)
Q Consensus 524 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~ 603 (693)
.|++++|.+.+..+..+..+++|+.|++++|+.....+.......+|++|++++|.+...+.. .+..+++|++|+++
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL---AVRHLVYLRFLNLS 256 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH---HHTTCTTCCEEECC
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH---HhcCccccCeeECC
Confidence 999999999877777899999999999999987776665566667999999999998866443 36788999999999
Q ss_pred CCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCc
Q 037679 604 YCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSV 683 (693)
Q Consensus 604 ~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 683 (693)
+|.+++..+..+..+++|++|++++|.+.+..|..+.++++|+.|++++|++.+..+..|..+++|++|++++|++.+..
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp SSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred CCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 99999777788899999999999999999888999999999999999999999777778899999999999999998665
Q ss_pred c
Q 037679 684 P 684 (693)
Q Consensus 684 p 684 (693)
+
T Consensus 337 ~ 337 (477)
T 2id5_A 337 R 337 (477)
T ss_dssp G
T ss_pred c
Confidence 4
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=2.7e-28 Score=258.60 Aligned_cols=194 Identities=20% Similarity=0.286 Sum_probs=132.0
Q ss_pred cCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCC
Q 037679 26 KLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNF 105 (693)
Q Consensus 26 ~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L 105 (693)
.++++++|+++++.+..+.+..|.++++|++|++++|.+.+..+.. |..+++|++|++++|.+....+..+. ++++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA--FAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCCCCCTTTTT-TCTTC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhh--ccCCCCcCEEECCCCCCCcCCHHHhc-CCCCC
Confidence 3678888888888888666667888888888888888887666655 78888888888888888877777776 88888
Q ss_pred cEEeccCCCCCchhhh-hhcCCCccEEEcCCCCCCCCCCCc-cCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCC
Q 037679 106 TVIGFNSCNLSEFPYF-LHNQDELVSLDLSSNKIAGQDLLV-LPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNL 183 (693)
Q Consensus 106 ~~L~l~~~~l~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i 183 (693)
++|++++|+++.+|.. ++++++|++|++++|.++.+.... ..+++|++|++++|.+++. +...+++|+++++++|.+
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCSSCC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeecccccc
Confidence 8888888888888765 588888888888888887754433 3566666666666666532 344556666666666655
Q ss_pred CCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcC
Q 037679 184 SGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSL 232 (693)
Q Consensus 184 ~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l 232 (693)
.+ +.... .|+.|++++|.+..++... .++|++|++++|++
T Consensus 199 ~~-----~~~~~-~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l 238 (390)
T 3o6n_A 199 ST-----LAIPI-AVEELDASHNSINVVRGPV---NVELTILKLQHNNL 238 (390)
T ss_dssp SE-----EECCS-SCSEEECCSSCCCEEECCC---CSSCCEEECCSSCC
T ss_pred cc-----cCCCC-cceEEECCCCeeeeccccc---cccccEEECCCCCC
Confidence 42 12223 4555555555554442211 23444444444443
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-27 Score=253.77 Aligned_cols=288 Identities=21% Similarity=0.249 Sum_probs=238.4
Q ss_pred CCCCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCC
Q 037679 2 NLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLT 81 (693)
Q Consensus 2 ~~~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~ 81 (693)
.++++++|+++++.++.+.+..|..+++|++|++++|.++++.+.+|.++++|++|++++|++.+..+.. +.++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--FQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH--hcCCCCCC
Confidence 3578999999999999777777899999999999999999888889999999999999999999887766 89999999
Q ss_pred EEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCC
Q 037679 82 ALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNK 160 (693)
Q Consensus 82 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~ 160 (693)
+|++++|.++......|. ++++|++|++++|+++.++. .++.+++|++|++++|.++.+ ....+++|+.|++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhc-CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeeccccc
Confidence 999999999977766666 89999999999999997754 689999999999999999874 34578899999999998
Q ss_pred CCCCCCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeec
Q 037679 161 LQGPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILK 240 (693)
Q Consensus 161 ~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~ 240 (693)
+.+. ...+.|++|++++|.+... +.. ..+ +|+.|++++|.+... ..+..+++|++|++++|+++.
T Consensus 198 l~~~---~~~~~L~~L~l~~n~l~~~-~~~--~~~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~------ 262 (390)
T 3o6n_A 198 LSTL---AIPIAVEELDASHNSINVV-RGP--VNV-ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK------ 262 (390)
T ss_dssp CSEE---ECCSSCSEEECCSSCCCEE-ECC--CCS-SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE------
T ss_pred cccc---CCCCcceEEECCCCeeeec-ccc--ccc-cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC------
Confidence 8743 2446899999999998854 322 245 899999999999876 568889999999999998752
Q ss_pred ccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceee
Q 037679 241 FNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTM 320 (693)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (693)
.. +..+..+++|+.|++++|++++ ++.. +.
T Consensus 263 ------~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~---------------------------------------- 292 (390)
T 3o6n_A 263 ------IM--YHPFVKMQRLERLYISNNRLVA-LNLY-GQ---------------------------------------- 292 (390)
T ss_dssp ------EE--SGGGTTCSSCCEEECCSSCCCE-EECS-SS----------------------------------------
T ss_pred ------cC--hhHccccccCCEEECCCCcCcc-cCcc-cC----------------------------------------
Confidence 11 2334678999999999998873 2221 01
Q ss_pred cCCCchhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCcccccc
Q 037679 321 SNKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLR 371 (693)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 371 (693)
..+.|++|++++|.+. .++..+..+++|++|++++|.++
T Consensus 293 -----------~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 293 -----------PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp -----------CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred -----------CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 1345788889888887 45667788899999999999876
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2e-27 Score=265.91 Aligned_cols=193 Identities=20% Similarity=0.282 Sum_probs=131.4
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCc
Q 037679 27 LTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFT 106 (693)
Q Consensus 27 ~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 106 (693)
+.+++.+++++|.+..+.+..|.++++|++|++++|.+.+..+.. |..+++|++|+|++|.+....+..|. ++++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA--FAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLLT 126 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHH--hcCCCCCCEEECCCCcCCCCCHHHHc-CCCCCC
Confidence 577888888888888777777888888888888888887766656 78888888888888888877777776 888888
Q ss_pred EEeccCCCCCchhhh-hhcCCCccEEEcCCCCCCCCCCCc-cCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCCC
Q 037679 107 VIGFNSCNLSEFPYF-LHNQDELVSLDLSSNKIAGQDLLV-LPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNLS 184 (693)
Q Consensus 107 ~L~l~~~~l~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i~ 184 (693)
+|++++|.++.+|.. ++++++|++|++++|.++.+.... .++++|++|++++|.+.+. +...+++|+.|++++|.+.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEECCSSCCS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-ChhhhhhhhhhhcccCccc
Confidence 888888888877765 588888888888888887754433 3566666666666666532 3445566666666666554
Q ss_pred CCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcC
Q 037679 185 GMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSL 232 (693)
Q Consensus 185 ~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l 232 (693)
+ +.... .|+.|++++|.+..+.+..+ ++|+.|++++|.+
T Consensus 206 ~-----l~~~~-~L~~L~ls~n~l~~~~~~~~---~~L~~L~L~~n~l 244 (597)
T 3oja_B 206 T-----LAIPI-AVEELDASHNSINVVRGPVN---VELTILKLQHNNL 244 (597)
T ss_dssp E-----EECCT-TCSEEECCSSCCCEEECSCC---SCCCEEECCSSCC
T ss_pred c-----ccCCc-hhheeeccCCcccccccccC---CCCCEEECCCCCC
Confidence 2 22223 45555555555544433211 3444444444443
No 40
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=2.8e-30 Score=280.60 Aligned_cols=112 Identities=21% Similarity=0.242 Sum_probs=53.8
Q ss_pred CCcEEEccCCcCCCCCCc-cccCCCCCcEEECCCCcCCCcc--cHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCC--
Q 037679 29 QLQIVRLAENQLEGSVPS-SIFELRNLQALDLSNNNLSGTV--DLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLP-- 103 (693)
Q Consensus 29 ~L~~L~ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~-- 103 (693)
+|++|++++|.+++.... .|..+++|++|++++|++.+.. .....+..+++|++|++++|.+.+.....+...++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 344455554444433222 2444555555555555543221 11112444555555555555554444434333344
Q ss_pred --CCcEEeccCCCCC-----chhhhhhcCCCccEEEcCCCCCCC
Q 037679 104 --NFTVIGFNSCNLS-----EFPYFLHNQDELVSLDLSSNKIAG 140 (693)
Q Consensus 104 --~L~~L~l~~~~l~-----~~~~~l~~l~~L~~L~L~~~~~~~ 140 (693)
+|++|++++|+++ .++..++.+++|++|++++|.++.
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 4555555555555 234556666666666666666543
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=8.7e-27 Score=260.66 Aligned_cols=287 Identities=21% Similarity=0.253 Sum_probs=239.4
Q ss_pred CCCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCE
Q 037679 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTA 82 (693)
Q Consensus 3 ~~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~ 82 (693)
+++++.++++++.+..+.+..|..+++|++|++++|.++++.+.+|.++++|++|++++|.+.+..+.. |.++++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--FQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH--HcCCCCCCE
Confidence 578899999999999877788899999999999999999888889999999999999999999887766 899999999
Q ss_pred EECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCC
Q 037679 83 LVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKL 161 (693)
Q Consensus 83 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 161 (693)
|++++|.++...+..|. ++++|++|++++|.++.+++ .++.+++|++|++++|.++.+ ....+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhc-cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccCcc
Confidence 99999999987776677 99999999999999997655 799999999999999999874 345688999999999988
Q ss_pred CCCCCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecc
Q 037679 162 QGPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKF 241 (693)
Q Consensus 162 ~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~ 241 (693)
.+. ...+.|+.|++++|.+....+.. .+ +|+.|++++|.++.. ..+..+++|++|++++|.++.
T Consensus 205 ~~l---~~~~~L~~L~ls~n~l~~~~~~~---~~-~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~------- 268 (597)
T 3oja_B 205 STL---AIPIAVEELDASHNSINVVRGPV---NV-ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK------- 268 (597)
T ss_dssp SEE---ECCTTCSEEECCSSCCCEEECSC---CS-CCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE-------
T ss_pred ccc---cCCchhheeeccCCccccccccc---CC-CCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCC-------
Confidence 743 34568999999999987543322 24 899999999999874 678889999999999998852
Q ss_pred cccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceeec
Q 037679 242 NNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMS 321 (693)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (693)
..+ ..+..+++|+.|++++|.+++ +|.. +.
T Consensus 269 -----~~~--~~~~~l~~L~~L~Ls~N~l~~-l~~~-~~----------------------------------------- 298 (597)
T 3oja_B 269 -----IMY--HPFVKMQRLERLYISNNRLVA-LNLY-GQ----------------------------------------- 298 (597)
T ss_dssp -----EES--GGGTTCSSCCEEECTTSCCCE-EECS-SS-----------------------------------------
T ss_pred -----CCH--HHhcCccCCCEEECCCCCCCC-CCcc-cc-----------------------------------------
Confidence 222 234678999999999998873 2221 11
Q ss_pred CCCchhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCcccccc
Q 037679 322 NKGTEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLR 371 (693)
Q Consensus 322 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 371 (693)
.++.|+.|++++|.+. .+|.++..+++|++|++++|.+.
T Consensus 299 ----------~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 299 ----------PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp ----------CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred ----------cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 1245788899998888 56677888999999999999876
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=2.4e-26 Score=237.70 Aligned_cols=293 Identities=16% Similarity=0.208 Sum_probs=236.6
Q ss_pred CccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEE
Q 037679 5 KLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALV 84 (693)
Q Consensus 5 ~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~ 84 (693)
++++++++++.++ .+|..+. ++|++|++++|.++++.+.+|.++++|++|++++|++.+..+.. |.++++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA--FAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT--TTTCTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH--hcCCCCCCEEE
Confidence 6899999999988 5565553 78999999999999888889999999999999999999887777 89999999999
Q ss_pred CCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCCCCCCCC--CCC-ccCCCCCcEEeCCCCC
Q 037679 85 LSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSSNKIAGQ--DLL-VLPWSKMNTLDLGFNK 160 (693)
Q Consensus 85 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~~~~~--~~~-~~~~~~L~~L~l~~n~ 160 (693)
+++|.++..... -.++|++|++++|+++.++. .++++++|++|++++|.++.. ... ..++++|++|++++|.
T Consensus 107 Ls~n~l~~l~~~----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLKELPEK----MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCSBCCSS----CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcCCccChh----hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 999999855432 23799999999999997765 689999999999999999752 222 2488999999999999
Q ss_pred CCCCCCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeec
Q 037679 161 LQGPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILK 240 (693)
Q Consensus 161 ~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~ 240 (693)
++. ++....++|++|++++|.+++..+..+..++ +|+.|++++|.+....+..|..+++|++|++++|+++
T Consensus 183 l~~-l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------- 253 (330)
T 1xku_A 183 ITT-IPQGLPPSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV------- 253 (330)
T ss_dssp CCS-CCSSCCTTCSEEECTTSCCCEECTGGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-------
T ss_pred ccc-CCccccccCCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-------
Confidence 984 4444558999999999999988889999999 9999999999999998889999999999999999986
Q ss_pred ccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceee
Q 037679 241 FNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTM 320 (693)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (693)
.++.. +..+++|+.|++++|+++ .++...|......
T Consensus 254 ------~lp~~--l~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~----------------------------------- 289 (330)
T 1xku_A 254 ------KVPGG--LADHKYIQVVYLHNNNIS-AIGSNDFCPPGYN----------------------------------- 289 (330)
T ss_dssp ------SCCTT--TTTCSSCCEEECCSSCCC-CCCTTSSSCSSCC-----------------------------------
T ss_pred ------cCChh--hccCCCcCEEECCCCcCC-ccChhhcCCcccc-----------------------------------
Confidence 23333 367899999999999998 4444333221100
Q ss_pred cCCCchhhhhhhhhhhhheeecCCcccc--cCChhhhcCCCCCeeeCcccc
Q 037679 321 SNKGTEIEYLKLSNLIAAIIISDKNFVG--EIPTSISSLKGLRTLSLSNNN 369 (693)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~ 369 (693)
.....+..+++++|.+.. ..+..+..+++++.+++++|+
T Consensus 290 ----------~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 290 ----------TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ----------TTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ----------cccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 012346778888887754 446678888999999998874
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=9.9e-27 Score=240.79 Aligned_cols=293 Identities=18% Similarity=0.217 Sum_probs=236.7
Q ss_pred CccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEE
Q 037679 5 KLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALV 84 (693)
Q Consensus 5 ~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~ 84 (693)
++++++++++.++ .+|..+ .++|++|++++|.+.++.+.+|.++++|++|++++|++.+..+.. |.++++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA--FSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG--STTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH--hhCcCCCCEEE
Confidence 5899999999988 566655 379999999999999888889999999999999999998777766 89999999999
Q ss_pred CCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCCCCCCC--CCCCccCCCCCcEEeCCCCCC
Q 037679 85 LSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSSNKIAG--QDLLVLPWSKMNTLDLGFNKL 161 (693)
Q Consensus 85 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~l~~n~~ 161 (693)
+++|.++...... .++|++|++++|+++.++. .++.+++|++|++++|.++. .....+...+|++|++++|.+
T Consensus 109 L~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKNHLVEIPPNL----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184 (332)
T ss_dssp CCSSCCCSCCSSC----CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBC
T ss_pred CCCCcCCccCccc----cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCC
Confidence 9999998554432 2899999999999998876 58999999999999999974 233334323999999999999
Q ss_pred CCCCCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecc
Q 037679 162 QGPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKF 241 (693)
Q Consensus 162 ~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~ 241 (693)
++ ++....++|++|++++|.+.+..+..+..++ +|+.|++++|.+..+.+..|..+++|++|++++|+++
T Consensus 185 ~~-l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------- 254 (332)
T 2ft3_A 185 TG-IPKDLPETLNELHLDHNKIQAIELEDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-------- 254 (332)
T ss_dssp SS-CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC--------
T ss_pred Cc-cCccccCCCCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe--------
Confidence 85 4444558999999999999988888999999 9999999999999999889999999999999999885
Q ss_pred cccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceeec
Q 037679 242 NNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMS 321 (693)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (693)
.++.. +..+++|+.|++++|+++ .++...+......
T Consensus 255 -----~lp~~--l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~------------------------------------ 290 (332)
T 2ft3_A 255 -----RVPAG--LPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFG------------------------------------ 290 (332)
T ss_dssp -----BCCTT--GGGCTTCCEEECCSSCCC-BCCTTSSSCSSCC------------------------------------
T ss_pred -----ecChh--hhcCccCCEEECCCCCCC-ccChhHccccccc------------------------------------
Confidence 23333 367999999999999998 4443333221100
Q ss_pred CCCchhhhhhhhhhhhheeecCCccc--ccCChhhhcCCCCCeeeCcccc
Q 037679 322 NKGTEIEYLKLSNLIAAIIISDKNFV--GEIPTSISSLKGLRTLSLSNNN 369 (693)
Q Consensus 322 ~~~~~~~~~~~~~~l~~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~ 369 (693)
.....++.+++++|.+. ...+.++..+++|+.+++++|.
T Consensus 291 ---------~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 291 ---------VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ---------SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ---------cccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 00234678888888776 5567788899999999998874
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=2.5e-29 Score=273.15 Aligned_cols=246 Identities=17% Similarity=0.116 Sum_probs=173.0
Q ss_pred CccccCCCCcceeecccCCCcCCCccccc-----ccccCCeeEecccccCCC----chhhhhcCCCCcEEeccCCccccc
Q 037679 441 PQEIFQLPNLQFLGVMKNPNLTGYLPQFQ-----KSSLLEDLRLSYTRFSGK----IPDSIENLESLSYLGISDCSFIGK 511 (693)
Q Consensus 441 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~ 511 (693)
+..+..+++|++|++++|.........+. ..++|++|++++|.+++. .+..+..+++|++|++++|.+...
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44566678999999999853222222222 245899999999988864 355667789999999999987654
Q ss_pred cc-----ccccccCCCcEEEeeCCcCCCC----ccccccCCccccEEEecCccccccchhccC-----CCCCCcEEeccc
Q 037679 512 IP-----SSLFNLTKLEHLYLSGNRFLDE----LPTSIGNLASLKALEISSFNFSSTLQASLG-----NLTQLDSLTISN 577 (693)
Q Consensus 512 ~~-----~~~~~l~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~ls~ 577 (693)
.. ..+..+++|++|++++|.+... .+..+..+++|++|++++|.+.......+. ..++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 32 2233578899999999988654 355566789999999999987655333332 336899999999
Q ss_pred CCCCccccch-hHhhhcCCCCcEEEccCCCCCCcccccccC-----CCCCCEEEccCCccCC----CccccccCcCcccE
Q 037679 578 SNFSRLMSSS-LSWLTNLNQLTSLNFPYCNLNNEIPFGISN-----LTQLTALDLSYNQLTG----PIPYSLMKLKKVSS 647 (693)
Q Consensus 578 n~l~~~~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~ 647 (693)
|.++...... ...+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++ .+|..+..+++|++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 9887653322 234667789999999999887654443332 6789999999998875 56777778899999
Q ss_pred EeccCccCCCCcchhhc----C-CCCCCeEEccCCcccCCccCc
Q 037679 648 LLLGFNQLSGRIPVEIS----N-LTQLQSLQLSSNQLEGSVPSS 686 (693)
Q Consensus 648 L~l~~n~~~~~~~~~l~----~-l~~L~~L~l~~n~~~~~~p~~ 686 (693)
|++++|++.+.....+. + ..+|+.|++.++.+....++.
T Consensus 403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence 99999988754322222 2 346888888888776444443
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.5e-26 Score=236.84 Aligned_cols=257 Identities=25% Similarity=0.370 Sum_probs=225.8
Q ss_pred cceEEEEecCCCccc--ccCccccCCCCcceeeccc-CCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCCcE
Q 037679 424 FGWKIVLAGGCGLQG--EFPQEIFQLPNLQFLGVMK-NPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSY 500 (693)
Q Consensus 424 ~~~~~~~~~~c~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 500 (693)
..++.+.++++.+.+ .+|..+..+++|++|++++ +......+..|..+++|++|++++|.+++..+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 368999999999998 8999999999999999996 5333344556999999999999999998888889999999999
Q ss_pred EeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCc-cccEEEecCccccccchhccCCCCCCcEEecccCC
Q 037679 501 LGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLA-SLKALEISSFNFSSTLQASLGNLTQLDSLTISNSN 579 (693)
Q Consensus 501 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~ 579 (693)
|++++|.+....|..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|++.+..+..+..+. |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999888888999999999999999999878888888888 999999999999988888888887 9999999998
Q ss_pred CCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCCCCc
Q 037679 580 FSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRI 659 (693)
Q Consensus 580 l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 659 (693)
+....+. .+..+++|++|++++|.+++..+. +..+++|++|++++|.+++.+|..+..+++|+.|++++|++.+.+
T Consensus 209 l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 209 LEGDASV---LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp EEECCGG---GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred ccCcCCH---HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 8765443 356889999999999999876665 788999999999999999889999999999999999999999888
Q ss_pred chhhcCCCCCCeEEccCCcccCCccCc
Q 037679 660 PVEISNLTQLQSLQLSSNQLEGSVPSS 686 (693)
Q Consensus 660 ~~~l~~l~~L~~L~l~~n~~~~~~p~~ 686 (693)
|.. ..+++|+.+++++|+..+..|-.
T Consensus 285 p~~-~~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 285 PQG-GNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp CCS-TTGGGSCGGGTCSSSEEESTTSS
T ss_pred CCC-ccccccChHHhcCCCCccCCCCC
Confidence 886 88999999999999955455543
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=4.6e-25 Score=228.06 Aligned_cols=268 Identities=18% Similarity=0.206 Sum_probs=209.6
Q ss_pred hhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCCcCCCccccCCCCCCCCCCC
Q 037679 335 LIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLCGEPLSRKCGNSEASPVED 414 (693)
Q Consensus 335 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~c~~~~~~~~~~ 414 (693)
.++.|++++|.+.+..+..++.+++|++|++++|.++.
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------------------------ 90 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK------------------------------------------ 90 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC------------------------------------------
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe------------------------------------------
Confidence 34566666666666656667778888888888877653
Q ss_pred CCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhc
Q 037679 415 DPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIEN 494 (693)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 494 (693)
..|..+..+++|++|++++|. ++.....+. ++|++|++++|.+.+..+..+.+
T Consensus 91 ------------------------~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~ 143 (330)
T 1xku_A 91 ------------------------ISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNG 143 (330)
T ss_dssp ------------------------BCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTT
T ss_pred ------------------------eCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcC
Confidence 123445567888888888874 332222222 67999999999998777888999
Q ss_pred CCCCcEEeccCCcccc--cccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCcE
Q 037679 495 LESLSYLGISDCSFIG--KIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDS 572 (693)
Q Consensus 495 l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 572 (693)
+++|+.|++++|.+.. ..+..+.++++|++|++++|.+.. .|..+ .++|++|++++|.+.+..+..+..+++|+.
T Consensus 144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 220 (330)
T 1xku_A 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAK 220 (330)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 9999999999998754 556778899999999999999854 44433 289999999999998887788999999999
Q ss_pred EecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccC------cCccc
Q 037679 573 LTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMK------LKKVS 646 (693)
Q Consensus 573 L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~ 646 (693)
|++++|.+....+. .+..+++|++|++++|.++ .+|.++..+++|++|++++|.+++..+..|.. .+.++
T Consensus 221 L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~ 296 (330)
T 1xku_A 221 LGLSFNSISAVDNG---SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296 (330)
T ss_dssp EECCSSCCCEECTT---TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS
T ss_pred EECCCCcCceeChh---hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccccc
Confidence 99999998876553 3567899999999999998 67778899999999999999998766666643 37899
Q ss_pred EEeccCccCCC--CcchhhcCCCCCCeEEccCCc
Q 037679 647 SLLLGFNQLSG--RIPVEISNLTQLQSLQLSSNQ 678 (693)
Q Consensus 647 ~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~ 678 (693)
.+++++|++.. ..|..|..+.+++.+++++|+
T Consensus 297 ~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ceEeecCcccccccCccccccccceeEEEecccC
Confidence 99999999864 567889999999999999884
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=8.3e-25 Score=226.31 Aligned_cols=130 Identities=18% Similarity=0.140 Sum_probs=63.6
Q ss_pred CCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEe
Q 037679 448 PNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYL 527 (693)
Q Consensus 448 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 527 (693)
++|++|++++|.........+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 45555555555322222234555555555555555555544445555555555555555544 34444555555555555
Q ss_pred eCCcCCCCccccccC------CccccEEEecCcccc--ccchhccCCCCCCcEEecccC
Q 037679 528 SGNRFLDELPTSIGN------LASLKALEISSFNFS--STLQASLGNLTQLDSLTISNS 578 (693)
Q Consensus 528 ~~~~l~~~~~~~~~~------l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~ls~n 578 (693)
++|.+.+..+..|.. .+.|+.|++++|++. ...+..+..+++|+.+++++|
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 555554443333332 234555555555443 223344444455555554443
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=7.7e-27 Score=261.87 Aligned_cols=136 Identities=14% Similarity=0.180 Sum_probs=76.8
Q ss_pred hcCCCCCEEECCCCcCCchhhhhhhcCCCC-CcEEeccCCC-CC--chhhhhhcCCCccEEEcCCCCCCCCCCCccCCCC
Q 037679 75 LNLKSLTALVLSSNKLSLLTRATLNTNLPN-FTVIGFNSCN-LS--EFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSK 150 (693)
Q Consensus 75 ~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~-l~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 150 (693)
..+++|++|+|++|.+++.....+...+++ |++|++++|. ++ .++.....+++|++|++++|.+++.+....
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l---- 184 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL---- 184 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH----
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH----
Confidence 367777777777776666655555523444 7777777665 22 233334566777777777776654221100
Q ss_pred CcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCCCCC----cccccccccccccEEEcccccccccccccccCCCCccEEE
Q 037679 151 MNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNLSGM----LPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMID 226 (693)
Q Consensus 151 L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i~~~----~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~ 226 (693)
. .....+++|++|++++|.+++. .+..+..++ +|+.|++++|.+..+ +..+..+++|++|+
T Consensus 185 -~------------~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~ 249 (592)
T 3ogk_B 185 -H------------ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR-SLVSVKVGDFEILEL-VGFFKAAANLEEFC 249 (592)
T ss_dssp -H------------HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT-TCCEEECSSCBGGGG-HHHHHHCTTCCEEE
T ss_pred -H------------HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC-CCcEEeccCccHHHH-HHHHhhhhHHHhhc
Confidence 0 0001345566666666655422 223344556 777777777776653 35566677777777
Q ss_pred ccC
Q 037679 227 FSN 229 (693)
Q Consensus 227 l~~ 229 (693)
+++
T Consensus 250 l~~ 252 (592)
T 3ogk_B 250 GGS 252 (592)
T ss_dssp ECB
T ss_pred ccc
Confidence 765
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1.1e-25 Score=230.31 Aligned_cols=239 Identities=24% Similarity=0.312 Sum_probs=213.0
Q ss_pred CCcceeecccCCCcC--CCcccccccccCCeeEecc-cccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcE
Q 037679 448 PNLQFLGVMKNPNLT--GYLPQFQKSSLLEDLRLSY-TRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEH 524 (693)
Q Consensus 448 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 524 (693)
.++++|+++++.... ..++.+..++.|++|++++ +.+.+..+..+..+++|++|++++|.++...|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 689999999995432 3456799999999999995 8888888999999999999999999998888999999999999
Q ss_pred EEeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCC-CCcEEecccCCCCccccchhHhhhcCCCCcEEEcc
Q 037679 525 LYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLT-QLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFP 603 (693)
Q Consensus 525 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~ 603 (693)
|++++|.+.+..|..+..+++|++|++++|++.+..+..+..++ +|+.|++++|.+....+..+ ..+. |++|+++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~---~~l~-L~~L~Ls 205 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF---ANLN-LAFVDLS 205 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG---GGCC-CSEEECC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH---hCCc-ccEEECc
Confidence 99999999888899999999999999999999988888888888 99999999999876555443 4555 9999999
Q ss_pred CCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCc
Q 037679 604 YCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSV 683 (693)
Q Consensus 604 ~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 683 (693)
+|.+++..+..+..+++|++|++++|.+++..|. +..+++|++|++++|++.+.+|..+..+++|++|++++|++.+.+
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 9999988889999999999999999999866655 778899999999999999899999999999999999999999999
Q ss_pred cCccccccC
Q 037679 684 PSSIFELRN 692 (693)
Q Consensus 684 p~~~~~~~~ 692 (693)
|+. .+++.
T Consensus 285 p~~-~~l~~ 292 (313)
T 1ogq_A 285 PQG-GNLQR 292 (313)
T ss_dssp CCS-TTGGG
T ss_pred CCC-ccccc
Confidence 986 55443
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.9e-26 Score=258.74 Aligned_cols=201 Identities=15% Similarity=0.118 Sum_probs=98.5
Q ss_pred cCCCCcEEEccCCcCCCCCCccccC-CC-CCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchh---hhhhhc
Q 037679 26 KLTQLQIVRLAENQLEGSVPSSIFE-LR-NLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLT---RATLNT 100 (693)
Q Consensus 26 ~~~~L~~L~ls~n~i~~~~~~~~~~-l~-~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~---~~~~~~ 100 (693)
.+++|++|++++|.+++..+..+.. ++ +|++|++++|.-...........++++|++|+|++|.+.+.. ...+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5666666666666655444444444 23 366666666652111111112345666666666666554332 112222
Q ss_pred CCCCCcEEeccCCCCC-----chhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCC-----CCCCCCCC
Q 037679 101 NLPNFTVIGFNSCNLS-----EFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQ-----GPLPVPSL 170 (693)
Q Consensus 101 ~l~~L~~L~l~~~~l~-----~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~l 170 (693)
.+++|++|+++++.++ .++..+.++++|++|++++|.+..+......+++|++|+++..... .......+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 5666666666666654 3344455666666666666665543322235566666665532111 01122244
Q ss_pred CCCCEEeCCCCCCCCCcccccccccccccEEEccccccccccc-ccccCCCCccEEEcc
Q 037679 171 NGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVP-QTFMNGTNLMMIDFS 228 (693)
Q Consensus 171 ~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~l~ 228 (693)
++|+.++++++... ..+..+..++ +|++|++++|.++.... ..+..+++|++|+++
T Consensus 270 ~~L~~L~l~~~~~~-~l~~~~~~~~-~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 270 RKLCRLGLSYMGPN-EMPILFPFAA-QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TTCCEEEETTCCTT-TGGGGGGGGG-GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccccccCccccchh-HHHHHHhhcC-CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 55555555554222 3344444444 55555555555432222 123444555555544
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=1.2e-24 Score=219.99 Aligned_cols=221 Identities=23% Similarity=0.257 Sum_probs=196.6
Q ss_pred cEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECC
Q 037679 7 STLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLS 86 (693)
Q Consensus 7 ~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~ 86 (693)
++++.+++.++ .+|..+ .++|++|++++|.++++.+++|.++++|++|++++|.+.+..+.. |.++++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA--FTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh--cCCccCCCEEeCC
Confidence 67899999988 456544 579999999999999888889999999999999999998777766 8999999999999
Q ss_pred CCc-CCchhhhhhhcCCCCCcEEeccCCCCCch-hhhhhcCCCccEEEcCCCCCCCCCCCcc-CCCCCcEEeCCCCCCCC
Q 037679 87 SNK-LSLLTRATLNTNLPNFTVIGFNSCNLSEF-PYFLHNQDELVSLDLSSNKIAGQDLLVL-PWSKMNTLDLGFNKLQG 163 (693)
Q Consensus 87 ~~~-~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~ 163 (693)
+|. +....+..+. .+++|++|++++|+++.+ +..++++++|++|++++|.++.++...+ .+++|++|++++|.+++
T Consensus 89 ~n~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 89 DNAQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp SCTTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 997 8877777787 999999999999999977 5578999999999999999998766544 88999999999999986
Q ss_pred CCC--CCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCC
Q 037679 164 PLP--VPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQG 234 (693)
Q Consensus 164 ~~~--~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~ 234 (693)
..+ +..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+..+++..+..+++|++|++++|++..
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcc-cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 443 55899999999999999988899999999 99999999999999988889999999999999999863
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=3.3e-24 Score=219.13 Aligned_cols=244 Identities=23% Similarity=0.305 Sum_probs=205.3
Q ss_pred cEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcc--cHHHHhhcCCCCCEEE
Q 037679 7 STLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTV--DLNMLLLNLKSLTALV 84 (693)
Q Consensus 7 ~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~--~~~~~l~~l~~L~~L~ 84 (693)
+.++++++.++ .+|..+. ++|++|++++|.++++.+..|.++++|++|++++|++.... +.. +..+++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS--DFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH--HHSCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc--cccccccCEEE
Confidence 57889998888 5555553 79999999999999777777999999999999999987543 444 77899999999
Q ss_pred CCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh--hhhcCCCccEEEcCCCCCCCCCCCcc-CCCCCcEEeCCCCCC
Q 037679 85 LSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY--FLHNQDELVSLDLSSNKIAGQDLLVL-PWSKMNTLDLGFNKL 161 (693)
Q Consensus 85 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~n~~ 161 (693)
+++|.+.... ..+. .+++|++|++++|+++.++. .++.+++|++|++++|.++......+ .+++|++|++++|.+
T Consensus 85 Ls~n~i~~l~-~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVITMS-SNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEEEEE-EEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCccccCh-hhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 9999987644 3465 89999999999999997764 78999999999999999987555444 789999999999998
Q ss_pred CC---CCCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceee
Q 037679 162 QG---PLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALI 238 (693)
Q Consensus 162 ~~---~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 238 (693)
.+ ...+..+++|++|++++|.+++..+..+..++ +|+.|++++|.++.+.+..|..+++|++|++++|+++.
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---- 237 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT---- 237 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB----
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC-CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc----
Confidence 75 33455899999999999999988888999999 99999999999999988889999999999999998852
Q ss_pred ecccccCCCCCCCccCCCC-CCceEEecCCCcccC
Q 037679 239 LKFNNFHGEIEEPQTGFEF-PKLRIIDLSHNRFTG 272 (693)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 272 (693)
..+.. +..+ ++|+.|++++|++++
T Consensus 238 --------~~~~~--~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 238 --------SKKQE--LQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp --------CSSSS--CCCCCTTCCEEECTTCCEEC
T ss_pred --------cCHHH--HHhhhccCCEEEccCCCeec
Confidence 22222 2556 489999999999874
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=5.6e-24 Score=229.79 Aligned_cols=245 Identities=20% Similarity=0.279 Sum_probs=214.3
Q ss_pred ccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 6 l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
.+.++.++..++ .+|..+. +++++|++++|.++++.+.+|.++++|++|++++|++.+..+.. |.++++|++|+|
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA--FNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh--ccCcccCCEEEC
Confidence 467888888888 4566554 78999999999999888999999999999999999998777766 899999999999
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCC-CCCCCCCCCcc-CCCCCcEEeCCCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSS-NKIAGQDLLVL-PWSKMNTLDLGFNKLQ 162 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~-~~~~~~~~~~~-~~~~L~~L~l~~n~~~ 162 (693)
++|.++...+..|. .+++|++|++++|+++.++. .+.++++|++|++++ +.+..++...+ ++++|++|++++|.+.
T Consensus 131 ~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 131 FDNWLTVIPSGAFE-YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CSSCCSBCCTTTSS-SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCCccChhhhc-ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 99999988877777 89999999999999998876 789999999999999 55555544444 8899999999999999
Q ss_pred CCCCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeeccc
Q 037679 163 GPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFN 242 (693)
Q Consensus 163 ~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~ 242 (693)
+.-.+..+++|++|++++|.+++..+..|..++ +|+.|++++|.+..+.+..|..+++|++|++++|+++.
T Consensus 210 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------- 280 (452)
T 3zyi_A 210 DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-------- 280 (452)
T ss_dssp SCCCCTTCTTCCEEECTTSCCSEECGGGGTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC--------
T ss_pred ccccccccccccEEECcCCcCcccCcccccCcc-CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc--------
Confidence 776677999999999999999998899999999 99999999999999999999999999999999999862
Q ss_pred ccCCCCCCCccCCCCCCceEEecCCCccc
Q 037679 243 NFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271 (693)
Q Consensus 243 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (693)
.+ ...+..+++|+.|++++|++.
T Consensus 281 -----~~-~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 281 -----LP-HDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp -----CC-TTSSTTCTTCCEEECCSSCEE
T ss_pred -----cC-hHHhccccCCCEEEccCCCcC
Confidence 11 223467899999999999876
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=6.4e-24 Score=228.50 Aligned_cols=245 Identities=23% Similarity=0.280 Sum_probs=213.1
Q ss_pred ccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 6 l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
.+.++.++..++ .+|..+. +++++|++++|.++.+.+.+|.++++|++|+|++|.+....+.. |.++++|++|+|
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~--~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA--FNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG--GTTCSSCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh--ccCCccCCEEEC
Confidence 567888888888 5666564 78999999999999888899999999999999999998777766 899999999999
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCCC-CCCCCCCCcc-CCCCCcEEeCCCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSSN-KIAGQDLLVL-PWSKMNTLDLGFNKLQ 162 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~-~~~~~~~~~~-~~~~L~~L~l~~n~~~ 162 (693)
++|.++...+..|. .+++|++|++++|+++.++. .+..+++|++|++++| .+..++...+ ++++|++|++++|.++
T Consensus 120 ~~n~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFV-YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CSSCCSSCCTTTSC-SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCcCCeeCHhHhh-ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 99999988777777 99999999999999998765 7899999999999994 5555444444 8899999999999999
Q ss_pred CCCCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeeccc
Q 037679 163 GPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFN 242 (693)
Q Consensus 163 ~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~ 242 (693)
..-.+..+++|++|++++|.+++..+..|..++ +|+.|++++|.+..+.+..|..+++|++|++++|+++.
T Consensus 199 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------- 269 (440)
T 3zyj_A 199 EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL-------- 269 (440)
T ss_dssp SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC--------
T ss_pred cccccCCCcccCEEECCCCccCccChhhhccCc-cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc--------
Confidence 766677999999999999999988899999999 99999999999999999999999999999999999862
Q ss_pred ccCCCCCCCccCCCCCCceEEecCCCccc
Q 037679 243 NFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271 (693)
Q Consensus 243 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (693)
. ....+..+++|+.|++++|++.
T Consensus 270 -----~-~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 270 -----L-PHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp -----C-CTTTTSSCTTCCEEECCSSCEE
T ss_pred -----c-ChhHhccccCCCEEEcCCCCcc
Confidence 1 1223467899999999999876
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=3.1e-24 Score=220.96 Aligned_cols=224 Identities=18% Similarity=0.190 Sum_probs=194.0
Q ss_pred CCCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCE
Q 037679 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTA 82 (693)
Q Consensus 3 ~~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~ 82 (693)
.+++++|++++|.++ .+|..+..+++|++|++++|.++ .+|..|.++++|++|++++|++. .+|.. +.++++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~--l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS--IASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGG--GGGCTTCCE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHH--HhcCcCCCE
Confidence 578999999999998 67888888999999999999999 77889999999999999999998 56766 899999999
Q ss_pred EECCCCcCCchhhhhhh--------cCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEE
Q 037679 83 LVLSSNKLSLLTRATLN--------TNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTL 154 (693)
Q Consensus 83 L~L~~~~~~~~~~~~~~--------~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L 154 (693)
|++++|.+....+..+. .++++|++|++++|+++.+|..++.+++|++|++++|.++.++.....+++|++|
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEE
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEE
Confidence 99999877666666554 1499999999999999999999999999999999999999866665688899999
Q ss_pred eCCCCCCCCCCCC--CCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcC
Q 037679 155 DLGFNKLQGPLPV--PSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSL 232 (693)
Q Consensus 155 ~l~~n~~~~~~~~--~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l 232 (693)
++++|.+.+..+. ..+++|++|++++|.+.+..|..+..++ +|+.|+|++|.+.+..|..+..+++|+.+++..+.+
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT-TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC-CCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 9999888776554 3788899999999888888888888888 899999999888888888888888888888876654
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=6.2e-24 Score=228.61 Aligned_cols=225 Identities=21% Similarity=0.262 Sum_probs=205.2
Q ss_pred CCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEE
Q 037679 4 NKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTAL 83 (693)
Q Consensus 4 ~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L 83 (693)
+++++|++++|.++.+.+.+|..+++|++|++++|.++++.+.+|.++++|++|++++|++....+.. |..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA--FVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTT--SCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhH--hhccccCcee
Confidence 56899999999999888999999999999999999999888899999999999999999999777656 8999999999
Q ss_pred ECCCCcCCchhhhhhhcCCCCCcEEeccC-CCCCchhh-hhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCC
Q 037679 84 VLSSNKLSLLTRATLNTNLPNFTVIGFNS-CNLSEFPY-FLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKL 161 (693)
Q Consensus 84 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 161 (693)
++++|.+....+..|. ++++|+.|++++ +.+..++. .++++++|++|++++|.++.++ ....+++|++|++++|.+
T Consensus 142 ~L~~N~i~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFN-RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp ECCSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCC
T ss_pred eCCCCcccccCHHHhh-hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCcc
Confidence 9999999988887887 999999999998 45666655 6899999999999999999754 456889999999999999
Q ss_pred CCCC--CCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCC
Q 037679 162 QGPL--PVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQ 233 (693)
Q Consensus 162 ~~~~--~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~ 233 (693)
.+.. .+..+++|++|++++|.+.+..+..|..++ +|+.|+|++|.++.+++..|..+++|+.|++++|++.
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT-TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCC-CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 8643 445899999999999999999899999999 9999999999999999999999999999999999875
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=5.2e-24 Score=230.07 Aligned_cols=225 Identities=19% Similarity=0.224 Sum_probs=205.4
Q ss_pred CCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEE
Q 037679 4 NKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTAL 83 (693)
Q Consensus 4 ~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L 83 (693)
+++++|++++|.++++.+.+|..+++|++|++++|.++++.+.+|.++++|++|++++|++....+.. |..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA--FEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTT--SSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhh--hcccCCCCEE
Confidence 57999999999999999999999999999999999999888899999999999999999999777666 8899999999
Q ss_pred ECCCCcCCchhhhhhhcCCCCCcEEeccC-CCCCchhh-hhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCC
Q 037679 84 VLSSNKLSLLTRATLNTNLPNFTVIGFNS-CNLSEFPY-FLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKL 161 (693)
Q Consensus 84 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 161 (693)
++++|.++......|. ++++|+.|++++ +.+..++. .+..+++|++|++++|.++.+ .....+++|++|++++|.+
T Consensus 153 ~L~~N~l~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFN-RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCC
T ss_pred ECCCCCcceeCHhHHh-cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcC
Confidence 9999999988877787 999999999998 56666665 689999999999999999985 3456889999999999999
Q ss_pred CCCCC--CCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCC
Q 037679 162 QGPLP--VPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQ 233 (693)
Q Consensus 162 ~~~~~--~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~ 233 (693)
.+..+ +..+++|+.|++++|.+.+..+..|..++ +|+.|+|++|.++.+++..|..+++|++|++++|++.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA-SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCC-CCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 86543 45899999999999999998899999999 9999999999999999999999999999999999875
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.7e-23 Score=215.38 Aligned_cols=227 Identities=23% Similarity=0.305 Sum_probs=198.6
Q ss_pred CCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEE
Q 037679 446 QLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHL 525 (693)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 525 (693)
..+.+++|++++|. +...++.+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 35889999999984 5555556888999999999999998 67788899999999999999888 678889999999999
Q ss_pred EeeCCcCCCCcccccc---------CCccccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCC
Q 037679 526 YLSGNRFLDELPTSIG---------NLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQ 596 (693)
Q Consensus 526 ~l~~~~l~~~~~~~~~---------~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~ 596 (693)
++++|.+.+..|..+. .+++|++|++++|.+. ..+..+..+++|++|++++|.+...++ .+..+++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~----~l~~l~~ 230 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP----AIHHLPK 230 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCG----GGGGCTT
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCch----hhccCCC
Confidence 9999887777776654 3899999999999988 455678899999999999999886544 3678899
Q ss_pred CcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccC
Q 037679 597 LTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSS 676 (693)
Q Consensus 597 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 676 (693)
|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|++.+.+|..+.++++|+.+++..
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 99999999999989999999999999999999988888999999999999999999999999999999999999999998
Q ss_pred Cccc
Q 037679 677 NQLE 680 (693)
Q Consensus 677 n~~~ 680 (693)
+.+.
T Consensus 311 ~~~~ 314 (328)
T 4fcg_A 311 HLQA 314 (328)
T ss_dssp GGSC
T ss_pred HHHH
Confidence 7665
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.4e-25 Score=251.79 Aligned_cols=166 Identities=15% Similarity=0.164 Sum_probs=97.7
Q ss_pred ccccCCCCCcEEECCCCcCCCccc-------------HHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccC
Q 037679 46 SSIFELRNLQALDLSNNNLSGTVD-------------LNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNS 112 (693)
Q Consensus 46 ~~~~~l~~L~~L~Ls~n~~~~~~~-------------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~ 112 (693)
..+.++++|+.|++++|+...... ....+..+++|++|+++++.+++.....+...+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 345556666666666654221110 1122457888999999988888777777765688899999888
Q ss_pred C-CCCc--hhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCccc
Q 037679 113 C-NLSE--FPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNLSGMLPE 189 (693)
Q Consensus 113 ~-~l~~--~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~ 189 (693)
| .++. ++..+.++++|++|++++|.+++....... .....+++|++|++++|. ......
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~-----------------~~~~~~~~L~~L~l~~~~-~~~~~~ 201 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS-----------------HFPDTYTSLVSLNISCLA-SEVSFS 201 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG-----------------GSCTTCCCCCEEECTTCC-SCCCHH
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH-----------------HHhhcCCcCcEEEecccC-CcCCHH
Confidence 8 5553 555666888899999888887653221110 001145667777777665 112122
Q ss_pred cc----ccccccccEEEcccccccccccccccCCCCccEEEccCC
Q 037679 190 CL----GNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNN 230 (693)
Q Consensus 190 ~~----~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n 230 (693)
.+ ..++ +|+.|++++|......+..+..+++|++|+++.+
T Consensus 202 ~l~~l~~~~~-~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 202 ALERLVTRCP-NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHHHHCT-TCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HHHHHHHhCC-CCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 22 2335 6777777666222224444555666666665443
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=2e-23 Score=213.40 Aligned_cols=249 Identities=23% Similarity=0.288 Sum_probs=191.2
Q ss_pred EEEecCCCcccccCccccCCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCc--hhhhhcCCCCcEEeccC
Q 037679 428 IVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKI--PDSIENLESLSYLGISD 505 (693)
Q Consensus 428 ~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~ 505 (693)
.+..++.++. .+|..+ .++|++|++++|.........|..+++|++|++++|.+.... +..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 3333333332 345443 368888999888543332334788888999999888877432 46667788999999999
Q ss_pred CcccccccccccccCCCcEEEeeCCcCCCCcc-ccccCCccccEEEecCccccccchhccCCCCCCcEEecccCCCCc-c
Q 037679 506 CSFIGKIPSSLFNLTKLEHLYLSGNRFLDELP-TSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSR-L 583 (693)
Q Consensus 506 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~-~ 583 (693)
|.+. ..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.. .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 8876 455668888999999999988865544 567888899999999988887777778888899999999888765 2
Q ss_pred ccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCCCCcchhh
Q 037679 584 MSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEI 663 (693)
Q Consensus 584 ~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 663 (693)
.+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+
T Consensus 167 ~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 167 LPD---IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp ECS---CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred chh---HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 222 25678889999999999887777788888999999999998887666678888899999999999988888888
Q ss_pred cCCC-CCCeEEccCCcccCCc
Q 037679 664 SNLT-QLQSLQLSSNQLEGSV 683 (693)
Q Consensus 664 ~~l~-~L~~L~l~~n~~~~~~ 683 (693)
..++ +|++|++++|++.+..
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSG
T ss_pred HhhhccCCEEEccCCCeeccc
Confidence 8884 8999999999887654
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=1.4e-23 Score=219.10 Aligned_cols=239 Identities=22% Similarity=0.231 Sum_probs=196.2
Q ss_pred ccccCCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCccccccc-ccccccC
Q 037679 442 QEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIP-SSLFNLT 520 (693)
Q Consensus 442 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~ 520 (693)
..+..+++|++|++++|.........|..+++|++|++++|.+++..+..+..+++|++|++++|.+..... ..+..++
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 70 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence 356678999999999995433334468899999999999999997777778999999999999998885444 4788999
Q ss_pred CCcEEEeeCCc-CCCCccccccCCccccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcE
Q 037679 521 KLEHLYLSGNR-FLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTS 599 (693)
Q Consensus 521 ~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~ 599 (693)
+|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+...+.. .+..+++|++
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~ 226 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI---FVDVTSSVEC 226 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHH---HHHHTTTEEE
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhh---hhhhcccccE
Confidence 99999999994 6555567788999999999999999888888899999999999999998755432 2456889999
Q ss_pred EEccCCCCCCcccccc---cCCCCCCEEEccCCccCC----CccccccCcCcccEEeccCccCCCCcchh-hcCCCCCCe
Q 037679 600 LNFPYCNLNNEIPFGI---SNLTQLTALDLSYNQLTG----PIPYSLMKLKKVSSLLLGFNQLSGRIPVE-ISNLTQLQS 671 (693)
Q Consensus 600 L~l~~~~l~~~~~~~l---~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~ 671 (693)
|++++|.+++..+..+ .....++.++++++.+.+ .+|..+.++++|+.|++++|++. .+|.. |..+++|++
T Consensus 227 L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK 305 (353)
T ss_dssp EEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred EECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCE
Confidence 9999999986544333 346788899999988864 35777888999999999999998 56665 589999999
Q ss_pred EEccCCcccCCcc
Q 037679 672 LQLSSNQLEGSVP 684 (693)
Q Consensus 672 L~l~~n~~~~~~p 684 (693)
|++++|++.+.+|
T Consensus 306 L~L~~N~~~~~~~ 318 (353)
T 2z80_A 306 IWLHTNPWDCSCP 318 (353)
T ss_dssp EECCSSCBCCCHH
T ss_pred EEeeCCCccCcCC
Confidence 9999999998776
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=8.6e-24 Score=220.65 Aligned_cols=258 Identities=16% Similarity=0.181 Sum_probs=185.8
Q ss_pred hhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCCcCCCccccCCCCCCCCCCC
Q 037679 335 LIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLCGEPLSRKCGNSEASPVED 414 (693)
Q Consensus 335 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~c~~~~~~~~~~ 414 (693)
.+++|++++|.+.+..+..++.+++|++|++++|.++.
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------------------------ 90 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT------------------------------------------ 90 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE------------------------------------------
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc------------------------------------------
Confidence 35666666666665555567777888888887777652
Q ss_pred CCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCccc-ccccccCCeeEecccccCCCch-hhh
Q 037679 415 DPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQ-FQKSSLLEDLRLSYTRFSGKIP-DSI 492 (693)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~ 492 (693)
..+..+.++++|++|++++|. ++...+. |..+++|++|++++|.+.+... ..+
T Consensus 91 ------------------------~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 145 (353)
T 2z80_A 91 ------------------------IEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145 (353)
T ss_dssp ------------------------ECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSC
T ss_pred ------------------------cCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCcccCchhhh
Confidence 112335567778888887774 3333333 7777888888888888775444 467
Q ss_pred hcCCCCcEEeccCC-cccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCc
Q 037679 493 ENLESLSYLGISDC-SFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLD 571 (693)
Q Consensus 493 ~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 571 (693)
..+++|++|++++| .+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+
T Consensus 146 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 225 (353)
T 2z80_A 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225 (353)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEE
T ss_pred ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhccccc
Confidence 77888888888887 45555566788888888888888888777777788888888888888887665555556678888
Q ss_pred EEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCC----cccccccCCCCCCEEEccCCccCCCccccccCcCcccE
Q 037679 572 SLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNN----EIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSS 647 (693)
Q Consensus 572 ~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 647 (693)
.|++++|.+....+..+........++.++++++.+.+ .+|..+..+++|++|++++|.++...+..+.++++|+.
T Consensus 226 ~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305 (353)
T ss_dssp EEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCE
Confidence 88888888877666555555667788888888888775 35667788999999999999998443344578899999
Q ss_pred EeccCccCCCCc
Q 037679 648 LLLGFNQLSGRI 659 (693)
Q Consensus 648 L~l~~n~~~~~~ 659 (693)
|++++|++.+..
T Consensus 306 L~L~~N~~~~~~ 317 (353)
T 2z80_A 306 IWLHTNPWDCSC 317 (353)
T ss_dssp EECCSSCBCCCH
T ss_pred EEeeCCCccCcC
Confidence 999999988543
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=1.1e-22 Score=205.58 Aligned_cols=206 Identities=21% Similarity=0.209 Sum_probs=94.3
Q ss_pred cCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCc-CCCCccccccCCccccEEEe
Q 037679 473 LLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNR-FLDELPTSIGNLASLKALEI 551 (693)
Q Consensus 473 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l 551 (693)
+|++|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|++++|. +....+..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 34444444444443333344444444444444444444434444444444444444443 33333344444444444444
Q ss_pred cCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCcc
Q 037679 552 SSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQL 631 (693)
Q Consensus 552 ~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l 631 (693)
++|.+....+..+..+++|++|++++|.+....+.. +..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT---FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH---hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 444444444444444444455555444444332221 23344445555555444433333344445555555555544
Q ss_pred CCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccC
Q 037679 632 TGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEG 681 (693)
Q Consensus 632 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 681 (693)
++..|..+.++++|+.|++++|++.+..+..+..+++|++|++++|++.+
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 44444444444455555555555543333344445555555555554443
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=1.3e-23 Score=215.01 Aligned_cols=226 Identities=21% Similarity=0.269 Sum_probs=183.8
Q ss_pred cceeecccCCCcCCCccc-cc-------ccccCCeeEecccccCCCchhhh--hcCCCCcEEeccCCccccccccccccc
Q 037679 450 LQFLGVMKNPNLTGYLPQ-FQ-------KSSLLEDLRLSYTRFSGKIPDSI--ENLESLSYLGISDCSFIGKIPSSLFNL 519 (693)
Q Consensus 450 L~~L~l~~~~~~~~~~~~-~~-------~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l 519 (693)
|++|++++|.......+. +. .+++|++|++++|.+++..+..+ ..+++|++|++++|.++.. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 777777777432333332 22 57889999999999987777665 7899999999999998866 6777776
Q ss_pred -----CCCcEEEeeCCcCCCCccccccCCccccEEEecCcccccc--chhcc--CCCCCCcEEecccCCCCccccchhHh
Q 037679 520 -----TKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSST--LQASL--GNLTQLDSLTISNSNFSRLMSSSLSW 590 (693)
Q Consensus 520 -----~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~ls~n~l~~~~~~~~~~ 590 (693)
++|++|++++|++.+..+..++.+++|++|++++|++.+. .+..+ ..+++|++|++++|.+..........
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 8999999999999888778899999999999999987654 22333 78999999999999988544322233
Q ss_pred hhcCCCCcEEEccCCCCCCccc-ccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCC
Q 037679 591 LTNLNQLTSLNFPYCNLNNEIP-FGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQL 669 (693)
Q Consensus 591 l~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 669 (693)
+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++|+.|++++|++.+. |. +..+++|
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 4678999999999999997664 45667899999999999998 6777666 8999999999999854 66 8999999
Q ss_pred CeEEccCCcccC
Q 037679 670 QSLQLSSNQLEG 681 (693)
Q Consensus 670 ~~L~l~~n~~~~ 681 (693)
++|++++|++++
T Consensus 299 ~~L~L~~N~l~~ 310 (312)
T 1wwl_A 299 GNLSLKGNPFLD 310 (312)
T ss_dssp EEEECTTCTTTC
T ss_pred CEEeccCCCCCC
Confidence 999999999984
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=1e-23 Score=216.30 Aligned_cols=258 Identities=22% Similarity=0.235 Sum_probs=200.0
Q ss_pred ccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 6 l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
++..+++.+.+.......+..+++|++|++++|.+++..+.+|.++++|++|++++|++.+..+ +..+++|++|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEEC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEEC
Confidence 4556666666665566666778899999999999988877889999999999999998876654 788899999999
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCc-cCCCCCcEEeCCCCCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLV-LPWSKMNTLDLGFNKLQGP 164 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~ 164 (693)
++|.++... ..++|++|++++|+++.++. ..+++|++|++++|.++.+.... ..+++|++|++++|.+.+.
T Consensus 88 s~n~l~~l~------~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL------VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE------ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc------CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 999876543 45899999999999987754 34788999999999998865433 3788999999999988864
Q ss_pred CCC---CCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecc
Q 037679 165 LPV---PSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKF 241 (693)
Q Consensus 165 ~~~---~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~ 241 (693)
.+. ..+++|++|++++|.+++. .....++ +|+.|++++|.+..+++. +..+++|++|++++|+++
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~-~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-------- 227 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV--KGQVVFA-KLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-------- 227 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCT-TCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC--------
T ss_pred cHHHHhhccCcCCEEECCCCcCccc--ccccccc-cCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc--------
Confidence 322 2578999999999998865 2334477 899999999999877665 888999999999999886
Q ss_pred cccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhccccc
Q 037679 242 NNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLT 294 (693)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~ 294 (693)
.++.. +..+++|+.|++++|++.......++..++.++.+++....
T Consensus 228 -----~l~~~--~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 228 -----LIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp -----EECTT--CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -----chhhH--hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 22332 36788999999999998833334557777888877766433
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=2.8e-24 Score=241.21 Aligned_cols=408 Identities=12% Similarity=0.107 Sum_probs=227.8
Q ss_pred CCCCCCEEeCCCCCCCCCcccccc-cccccccEEEcccc-ccccc-ccccccCCCCccEEEccCCcCCCceeeecccccC
Q 037679 169 SLNGLQALDLSYNNLSGMLPECLG-NFSVELSALKLQAN-NFYRI-VPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFH 245 (693)
Q Consensus 169 ~l~~L~~L~L~~~~i~~~~~~~~~-~~~~~L~~L~L~~~-~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~ 245 (693)
.+++|++|++++|.+++..+..+. .++ +|+.|++++| .+... .+..+..+++|++|++++|.+++...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~-------- 173 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFK-NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG-------- 173 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCT-TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG--------
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCC-CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch--------
Confidence 456777777777776655555554 456 7777777777 34332 22333467777777777776542100
Q ss_pred CCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceeecCCCc
Q 037679 246 GEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKGT 325 (693)
Q Consensus 246 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (693)
...+ .....+++|+.|++++|. +.+....+ ..+
T Consensus 174 ~~l~--~~~~~~~~L~~L~l~~~~--~~~~~~~l---~~l---------------------------------------- 206 (594)
T 2p1m_B 174 HWLS--HFPDTYTSLVSLNISCLA--SEVSFSAL---ERL---------------------------------------- 206 (594)
T ss_dssp GGGG--GSCTTCCCCCEEECTTCC--SCCCHHHH---HHH----------------------------------------
T ss_pred HHHH--HHhhcCCcCcEEEecccC--CcCCHHHH---HHH----------------------------------------
Confidence 0001 111356778888887775 12221111 000
Q ss_pred hhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccCCCCCCCCcccccccCcccCCCCCcCCCccccCC
Q 037679 326 EIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRGGAIPQGTQFSTFTNDWFAGNPGLCGEPLSRKCG 405 (693)
Q Consensus 326 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~c~ 405 (693)
...+++|+.|++++|.....++..+..+++|++|++..+... + ....+..+.. .+.++++|+.+.
T Consensus 207 ----~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~---~-~~~~~~~l~~-~l~~~~~L~~Ls------ 271 (594)
T 2p1m_B 207 ----VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE---V-RPDVYSGLSV-ALSGCKELRCLS------ 271 (594)
T ss_dssp ----HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC---C-CHHHHHHHHH-HHHTCTTCCEEE------
T ss_pred ----HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc---c-chhhHHHHHH-HHhcCCCccccc------
Confidence 011345666777666333335556667777777776544310 0 0000011110 222333222110
Q ss_pred CCCCCCCCCCCCcccccccceEEEEecCCCcccccCccccCCCCcceeecccCCCcCCC-ccc-ccccccCCeeEecccc
Q 037679 406 NSEASPVEDDPPSESVLAFGWKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGY-LPQ-FQKSSLLEDLRLSYTR 483 (693)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~-~~~~~~L~~L~l~~~~ 483 (693)
.+.... ...++..+..+++|++|++++|. +... ... +..+++|++|++++|
T Consensus 272 ------------------------~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~- 324 (594)
T 2p1m_B 272 ------------------------GFWDAV-PAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY- 324 (594)
T ss_dssp ------------------------CCBTCC-GGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-
T ss_pred ------------------------CCcccc-hhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-
Confidence 000000 01233334457888888888886 3321 111 457788888888887
Q ss_pred cCCCch-hhhhcCCCCcEEeccC---------Ccccccccccc-cccCCCcEEEeeCCcCCCCcccccc-CCccccEEEe
Q 037679 484 FSGKIP-DSIENLESLSYLGISD---------CSFIGKIPSSL-FNLTKLEHLYLSGNRFLDELPTSIG-NLASLKALEI 551 (693)
Q Consensus 484 ~~~~~~-~~~~~l~~L~~L~l~~---------~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l 551 (693)
+..... .....+++|+.|++.+ +.++......+ ..+++|++|.+..+.+++.....+. .+++|+.|++
T Consensus 325 ~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L 404 (594)
T 2p1m_B 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL 404 (594)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEE
T ss_pred cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEe
Confidence 432222 2233578888888833 33443322223 3478888888887777655444443 4788888888
Q ss_pred c--C----cccccc-----chhccCCCCCCcEEecccCCCCccccchhHhhhc-CCCCcEEEccCCCCCCcccccc-cCC
Q 037679 552 S--S----FNFSST-----LQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTN-LNQLTSLNFPYCNLNNEIPFGI-SNL 618 (693)
Q Consensus 552 ~--~----~~~~~~-----~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~-l~~L~~L~l~~~~l~~~~~~~l-~~l 618 (693)
+ + +.++.. ....+..+++|+.|++++ .+++.. +..+.. +++|+.|++++|.+++.....+ .++
T Consensus 405 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~---~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 480 (594)
T 2p1m_B 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV---FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480 (594)
T ss_dssp EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH---HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred ecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH---HHHHHHhchhccEeeccCCCCcHHHHHHHHhcC
Confidence 8 3 344421 122356678888888876 444432 223333 7888888888888876554444 567
Q ss_pred CCCCEEEccCCccCCCccc-cccCcCcccEEeccCccCCCCcchhh-cCCCCCCeEEccCCc
Q 037679 619 TQLTALDLSYNQLTGPIPY-SLMKLKKVSSLLLGFNQLSGRIPVEI-SNLTQLQSLQLSSNQ 678 (693)
Q Consensus 619 ~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~ 678 (693)
++|++|++++|.+++..+. ....+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus 481 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp TTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 8888888888888644433 33457888888888888854444444 556777766666553
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=6.7e-23 Score=210.28 Aligned_cols=250 Identities=18% Similarity=0.160 Sum_probs=185.7
Q ss_pred eEEEEecCCCcccccCccccCCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCCcEEeccC
Q 037679 426 WKIVLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISD 505 (693)
Q Consensus 426 ~~~~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 505 (693)
++...++.+.+.......+..+++|++|++++|.........|..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4445555555544444445567789999999884333333458888889999999888875443 78888899999998
Q ss_pred CcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCcEEecccCCCCcccc
Q 037679 506 CSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMS 585 (693)
Q Consensus 506 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 585 (693)
|.++... ..++|++|++++|.+.+..+. .+++|+.|++++|.+....+..+..+++|+.|++++|.+....+
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 8766432 347889999999888655433 36788999999988888777778888889999999988887654
Q ss_pred chhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhcC
Q 037679 586 SSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISN 665 (693)
Q Consensus 586 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 665 (693)
..+ ...+++|++|++++|.+++. + ....+++|++|++++|.++ .+|..+..+++|+.|++++|++. .+|..+..
T Consensus 162 ~~~--~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 162 AEL--AASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp GGG--GGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred HHH--hhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 432 24678899999999988754 3 2345888999999999887 44555778889999999999888 57778888
Q ss_pred CCCCCeEEccCCccc-CCccCcccccc
Q 037679 666 LTQLQSLQLSSNQLE-GSVPSSIFELR 691 (693)
Q Consensus 666 l~~L~~L~l~~n~~~-~~~p~~~~~~~ 691 (693)
+++|+.|++++|++. +.+|+.+.+++
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccc
Confidence 889999999999888 55666665543
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=5.7e-21 Score=211.53 Aligned_cols=258 Identities=24% Similarity=0.269 Sum_probs=212.1
Q ss_pred CccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEE
Q 037679 5 KLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALV 84 (693)
Q Consensus 5 ~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~ 84 (693)
++++|+++++.++ .+|..+. ++|++|++++|.++.+ |. .+++|++|++++|++... +. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-p~-----~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSL-PV-----LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSCC-CC-----CCTTCCEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCcC-CC-----CCCCCCEEE
Confidence 5899999999999 6676665 8999999999999854 43 679999999999998743 32 679999999
Q ss_pred CCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCC
Q 037679 85 LSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGP 164 (693)
Q Consensus 85 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 164 (693)
+++|.++.... .+++|+.|++++|+++.+|.. +++|++|++++|.++.++. ...+|+.|++++|.+++.
T Consensus 108 Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 108 IFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp ECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC
T ss_pred CcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCC
Confidence 99999886543 678999999999999998874 4899999999999987543 457899999999999963
Q ss_pred CCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeeccccc
Q 037679 165 LPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNF 244 (693)
Q Consensus 165 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~ 244 (693)
+ ..+++|+.|++++|.++++ +. ... +|+.|++++|.+..++. ..++|+.|++++|+++.
T Consensus 177 -~-~~~~~L~~L~Ls~N~l~~l-~~---~~~-~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~---------- 235 (622)
T 3g06_A 177 -P-MLPSGLQELSVSDNQLASL-PT---LPS-ELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS---------- 235 (622)
T ss_dssp -C-CCCTTCCEEECCSSCCSCC-CC---CCT-TCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC----------
T ss_pred -c-ccCCCCcEEECCCCCCCCC-CC---ccc-hhhEEECcCCcccccCC----CCCCCCEEEccCCccCc----------
Confidence 3 6779999999999999864 32 235 89999999999987653 24889999999998862
Q ss_pred CCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhhcccccchhccccccccccceeccccccceeecCCC
Q 037679 245 HGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDINASKLTYLQVKLLPYDVLGFTYYGYADYSLTMSNKG 324 (693)
Q Consensus 245 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (693)
++ ..+++|+.|++++|+++ .+|..
T Consensus 236 ---lp-----~~l~~L~~L~Ls~N~L~-~lp~~----------------------------------------------- 259 (622)
T 3g06_A 236 ---LP-----VLPSELKELMVSGNRLT-SLPML----------------------------------------------- 259 (622)
T ss_dssp ---CC-----CCCTTCCEEECCSSCCS-CCCCC-----------------------------------------------
T ss_pred ---CC-----CCCCcCcEEECCCCCCC-cCCcc-----------------------------------------------
Confidence 22 34688999999999987 45531
Q ss_pred chhhhhhhhhhhhheeecCCcccccCChhhhcCCCCCeeeCccccccC
Q 037679 325 TEIEYLKLSNLIAAIIISDKNFVGEIPTSISSLKGLRTLSLSNNNLRG 372 (693)
Q Consensus 325 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 372 (693)
+.+|+.|++++|.+. .+|..+..+++|+.|++++|++++
T Consensus 260 --------~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 260 --------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp --------CTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred --------cccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 245788999999988 668889999999999999999875
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=1.7e-22 Score=206.66 Aligned_cols=176 Identities=26% Similarity=0.293 Sum_probs=74.7
Q ss_pred CCCCCcEEECCCCcCCCcccHHHHh--hcCCCCCEEECCCCcCCchhhhhhhcCC-----CCCcEEeccCCCCCchh-hh
Q 037679 50 ELRNLQALDLSNNNLSGTVDLNMLL--LNLKSLTALVLSSNKLSLLTRATLNTNL-----PNFTVIGFNSCNLSEFP-YF 121 (693)
Q Consensus 50 ~l~~L~~L~Ls~n~~~~~~~~~~~l--~~l~~L~~L~L~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~-~~ 121 (693)
++++|++|++++|++.+..+.. + ..+++|++|++++|.++.. +..+. .+ ++|++|++++|+++.++ ..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPP--LLEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQ 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCC--SSSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTT
T ss_pred CcCCccEEEccCCcccchhHHH--HHHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHH
Confidence 3444444444444444433332 2 4444444444444444433 22222 22 44444444444444333 34
Q ss_pred hhcCCCccEEEcCCCCCCCC---CCCc--cCCCCCcEEeCCCCCCCCCCCC-----CCCCCCCEEeCCCCCCCCCcc-cc
Q 037679 122 LHNQDELVSLDLSSNKIAGQ---DLLV--LPWSKMNTLDLGFNKLQGPLPV-----PSLNGLQALDLSYNNLSGMLP-EC 190 (693)
Q Consensus 122 l~~l~~L~~L~L~~~~~~~~---~~~~--~~~~~L~~L~l~~n~~~~~~~~-----~~l~~L~~L~L~~~~i~~~~~-~~ 190 (693)
++.+++|++|++++|.+... .... ..+++|++|++++|.+++.... ..+++|++|++++|.+++..+ ..
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 44444444444444443321 0011 2344444444444444421100 133455555555555544332 22
Q ss_pred cccccccccEEEcccccccccccccccCCCCccEEEccCCcCC
Q 037679 191 LGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQ 233 (693)
Q Consensus 191 ~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~ 233 (693)
+..++ +|+.|++++|.++.++. .+. ++|++|++++|+++
T Consensus 249 ~~~l~-~L~~L~Ls~N~l~~ip~-~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 249 CDWPS-QLNSLNLSFTGLKQVPK-GLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp CCCCT-TCCEEECTTSCCSSCCS-SCC--SEEEEEECCSSCCC
T ss_pred hhhcC-CCCEEECCCCccChhhh-hcc--CCceEEECCCCCCC
Confidence 33344 55555555555543322 222 45555555555543
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=9e-22 Score=213.70 Aligned_cols=239 Identities=24% Similarity=0.263 Sum_probs=164.1
Q ss_pred cchhhccCC----CCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhh
Q 037679 20 IPVEIRKLT----QLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTR 95 (693)
Q Consensus 20 ~~~~~~~~~----~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 95 (693)
+|..+..+. +|++|++++|.+++..+.+|.++++|++|+|++|.+.+..+ +..+++|++|++++|.++...
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~l~- 96 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELL- 96 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSEEEEEE-
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCcCCCCC-
Confidence 444454443 78888888888777777778888888888888887766554 677788888888887776433
Q ss_pred hhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCc-cCCCCCcEEeCCCCCCCCCCCCC---CCC
Q 037679 96 ATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLV-LPWSKMNTLDLGFNKLQGPLPVP---SLN 171 (693)
Q Consensus 96 ~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~---~l~ 171 (693)
..++|+.|++++|.++.++. ..+++|++|++++|.++...... ..+++|+.|++++|.+.+..+.. .++
T Consensus 97 -----~~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 97 -----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (487)
T ss_dssp -----ECTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred -----CCCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC
Confidence 34778888888888776654 24677888888888877754333 36777888888888777543322 567
Q ss_pred CCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecccccCCCCCCC
Q 037679 172 GLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEP 251 (693)
Q Consensus 172 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~ 251 (693)
+|+.|++++|.+++.. ....++ +|+.|+|++|.++.+++. |..+++|+.|++++|.++ .++..
T Consensus 170 ~L~~L~Ls~N~l~~~~--~~~~l~-~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~-------------~lp~~ 232 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVK--GQVVFA-KLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-------------LIEKA 232 (487)
T ss_dssp TCCEEECTTSCCCEEE--CCCCCT-TCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-------------EECTT
T ss_pred cccEEecCCCcccccc--ccccCC-CCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCc-------------ccchh
Confidence 8888888888877552 233566 788888888888776554 777888888888888775 23333
Q ss_pred ccCCCCCCceEEecCCCcccCCCCCcccccchhhhhhh
Q 037679 252 QTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWNAMKDIN 289 (693)
Q Consensus 252 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~ 289 (693)
+..+++|+.|++++|++.......++..++.++.+.
T Consensus 233 --l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 233 --LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (487)
T ss_dssp --CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred --hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEe
Confidence 356788888888888887322223344455554443
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.1e-20 Score=188.93 Aligned_cols=200 Identities=24% Similarity=0.321 Sum_probs=115.8
Q ss_pred ccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 6 l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
.++++++++.++ .+|..+. +++++|++++|.++++.+.+|.++++|++|++++|++....+.. |.++++|++|++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~--~~~l~~L~~L~l 92 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI--FKELKNLETLWV 92 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT--TSSCTTCCEEEC
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh--hcCCCCCCEEEC
Confidence 556666666666 3444343 56666666666666555556666666666666666666444433 556666666666
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGP 164 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 164 (693)
++|.+....+..+. .+++|++|++++|+++.++. .++.+++|++|++++|.++.++..
T Consensus 93 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------------------- 151 (270)
T 2o6q_A 93 TDNKLQALPIGVFD-QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG-------------------- 151 (270)
T ss_dssp CSSCCCCCCTTTTT-TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------------------
T ss_pred CCCcCCcCCHhHcc-cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh--------------------
Confidence 66666555444444 55555555555555554432 344555555555555544432211
Q ss_pred CCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCC
Q 037679 165 LPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQ 233 (693)
Q Consensus 165 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~ 233 (693)
.+..+++|++|++++|.+++..+..|..++ +|+.|++++|.++.+++..|..+++|+.|++++|++.
T Consensus 152 -~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 152 -VFDKLTSLKELRLYNNQLKRVPEGAFDKLT-ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp -TTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -HccCCcccceeEecCCcCcEeChhHhccCC-CcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 123455666666666666655555566666 6666666666666666655666666666666666553
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=1.9e-21 Score=195.36 Aligned_cols=219 Identities=23% Similarity=0.265 Sum_probs=169.4
Q ss_pred EEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCC
Q 037679 8 TLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSS 87 (693)
Q Consensus 8 ~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~ 87 (693)
+.+.++..+. .+|..+. ++|++|++++|.++++.+.+|.++++|++|++++|++.+..+.. |.++++|++|++++
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT--TTTCTTCCEEECTT
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH--ccCCcCCCEEECCC
Confidence 4555555555 4555453 57888888888888777778888888888888888887666555 78888888888888
Q ss_pred CcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCCCCCCCCCC--CccCCCCCcEEeCCCCCCCCC
Q 037679 88 NKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSSNKIAGQDL--LVLPWSKMNTLDLGFNKLQGP 164 (693)
Q Consensus 88 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~ 164 (693)
|.++...+..+. ++++|++|++++|.++.++. .++.+++|++|++++|.++.+.. ....+++|++|++++|.+++.
T Consensus 86 n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 86 NPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CCCCEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CccCccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 888877777777 88888888888888887665 67888888888888888887442 334788888888888888754
Q ss_pred CC--CCCCCCCC----EEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCC
Q 037679 165 LP--VPSLNGLQ----ALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQG 234 (693)
Q Consensus 165 ~~--~~~l~~L~----~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~ 234 (693)
.+ +..+++|+ .|++++|.+.+..+..+ ... +|+.|++++|.++.+++..|..+++|++|++++|++..
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCcccc-CCC-cccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 32 22334444 89999999986655544 445 79999999999999888888999999999999999863
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1e-21 Score=213.21 Aligned_cols=229 Identities=17% Similarity=0.148 Sum_probs=170.8
Q ss_pred CCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEE
Q 037679 446 QLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHL 525 (693)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 525 (693)
.+++|++|++++|......+..|..+++|++|++++|.+++..+ +..+++|++|++++|.++... ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34588888888885433334468888888888888888875443 778888888888888766432 23788888
Q ss_pred EeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCC
Q 037679 526 YLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYC 605 (693)
Q Consensus 526 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~ 605 (693)
++++|.+.+..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+ ...+++|++|++++|
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL--AASSDTLEHLNLQYN 179 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG--GGGTTTCCEEECTTS
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH--hhhCCcccEEecCCC
Confidence 8888888655443 35788888888888888777777888888888888888877654432 236788888888888
Q ss_pred CCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCccc-CCcc
Q 037679 606 NLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLE-GSVP 684 (693)
Q Consensus 606 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p 684 (693)
.+++..+ +..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. .+|..+..+++|+.|++++|++. +.+|
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred ccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchH
Confidence 8875532 3468888888888888874 4445778888888888888888 47777888888888888888887 4555
Q ss_pred Cccccc
Q 037679 685 SSIFEL 690 (693)
Q Consensus 685 ~~~~~~ 690 (693)
..+..+
T Consensus 256 ~~~~~l 261 (487)
T 3oja_A 256 DFFSKN 261 (487)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 555544
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=5e-21 Score=192.34 Aligned_cols=208 Identities=24% Similarity=0.297 Sum_probs=135.3
Q ss_pred cCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEec
Q 037679 473 LLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEIS 552 (693)
Q Consensus 473 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 552 (693)
.|++|++++|.+++..+..|.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 46666666666665555566666777777777776665555566667777777777777655555666667777777777
Q ss_pred CccccccchhccCCCCCCcEEecccCCCCccc-cchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCC----EEEcc
Q 037679 553 SFNFSSTLQASLGNLTQLDSLTISNSNFSRLM-SSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLT----ALDLS 627 (693)
Q Consensus 553 ~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~----~L~l~ 627 (693)
+|.+.......+..+++|++|++++|.+.... +. .+..+++|++|++++|++++..+..+..+++|+ +|+++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCch---hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 77666655555666777777777777665532 22 245667777777777777655555555445554 67777
Q ss_pred CCccCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCcc
Q 037679 628 YNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 628 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 684 (693)
+|.+.+..+..+ ...+|+.|++++|++.+..+..+..+++|++|++++|++.+..|
T Consensus 186 ~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 186 LNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 777764444333 33467777777777775555556777777777777777776665
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.9e-20 Score=187.25 Aligned_cols=184 Identities=24% Similarity=0.242 Sum_probs=90.9
Q ss_pred cCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEec
Q 037679 473 LLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEIS 552 (693)
Q Consensus 473 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 552 (693)
.+++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 45555555555554444445555555555555555443333334445555555555555444333444444555555555
Q ss_pred CccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccC
Q 037679 553 SFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLT 632 (693)
Q Consensus 553 ~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~ 632 (693)
+|.+....+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 118 ~n~l~~~~~~~~~~l~---------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLT---------------------------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp SSCCCCCCTTTTTTCT---------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCccCeeCHHHhCcCc---------------------------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 5544444444444444 4555555555444333333445555555555555555
Q ss_pred CCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCc
Q 037679 633 GPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSV 683 (693)
Q Consensus 633 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 683 (693)
+..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|++.+..
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 444444555555555555555555433334555555555555555555443
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=6.1e-20 Score=203.31 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=27.8
Q ss_pred CCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccc
Q 037679 496 ESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTL 560 (693)
Q Consensus 496 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 560 (693)
++|+.|++++|.++. +|. .+++|+.|++++|.+. .+|..+..+++|+.|++++|++.+..
T Consensus 241 ~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 241 SELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred CcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence 445555555554442 222 3344555555555543 33444444555555555555544433
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.1e-20 Score=189.33 Aligned_cols=210 Identities=22% Similarity=0.244 Sum_probs=140.3
Q ss_pred ccccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCcccc
Q 037679 468 FQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLK 547 (693)
Q Consensus 468 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 547 (693)
...+++|+.|+++++.+... ..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34455566666666655532 2355566666666666665532 3566667777777777776655555566677777
Q ss_pred EEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEcc
Q 037679 548 ALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLS 627 (693)
Q Consensus 548 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 627 (693)
+|++++|.+.+..+..+..+++|++|++++|.+....+.. +..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV---FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHH---hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 7777777766665555667777777777777666554422 3566777777777777776555566777788888888
Q ss_pred CCccCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCccCcccccc
Q 037679 628 YNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVPSSIFELR 691 (693)
Q Consensus 628 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~ 691 (693)
+|.+++..+..+..+++|+.|++++|++.+ .+++|+.|+++.|.+.+.+|.++.+++
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 190 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 887776666667777788888888877762 355677778888888878887776654
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=4e-21 Score=192.41 Aligned_cols=201 Identities=23% Similarity=0.322 Sum_probs=127.1
Q ss_pred ccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCC
Q 037679 48 IFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQD 126 (693)
Q Consensus 48 ~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~ 126 (693)
+..+++|+.|++++|.+..... +..+++|++|++++|.+.... .+. .+++|++|++++|.++.++. .++.++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~----l~~l~~L~~L~l~~n~l~~~~--~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQG----IQYLPNVRYLALGGNKLHDIS--ALK-ELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTT----GGGCTTCCEEECTTSCCCCCG--GGT-TCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cccccceeeeeeCCCCcccccc----cccCCCCcEEECCCCCCCCch--hhc-CCCCCCEEECCCCccCccChhHhcCCc
Confidence 3344444444444444432211 344444444444444444321 233 44455555555554444333 234555
Q ss_pred CccEEEcCCCCCCCCCCCc-cCCCCCcEEeCCCCCCCCCCC--CCCCCCCCEEeCCCCCCCCCcccccccccccccEEEc
Q 037679 127 ELVSLDLSSNKIAGQDLLV-LPWSKMNTLDLGFNKLQGPLP--VPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKL 203 (693)
Q Consensus 127 ~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L 203 (693)
+|++|++++|.++.+.... ..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+..+..++ +|+.|++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L 188 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT-QLKDLRL 188 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEEC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc-cCCEEEC
Confidence 5555555555555433332 245555555555555553333 34678888888888888877777788888 8999999
Q ss_pred ccccccccccccccCCCCccEEEccCCcCCCceeeecccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCc
Q 037679 204 QANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSK 277 (693)
Q Consensus 204 ~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 277 (693)
++|.+..+.+..|..+++|++|++++|++. ..++.++.+++..|.+.|.+|..
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------------------~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------------------CTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC---------------------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCCCcc---------------------ccCcHHHHHHHHHHhCCCcccCc
Confidence 999999888888899999999999999875 45778899999999999888865
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=5.1e-20 Score=187.71 Aligned_cols=195 Identities=22% Similarity=0.360 Sum_probs=148.2
Q ss_pred hccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCC
Q 037679 24 IRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLP 103 (693)
Q Consensus 24 ~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~ 103 (693)
+..+++|++|++++|.+... + ++..+++|++|++++|++.+..+ +..+++|++|++++|.++... .+. .++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~l~~~~--~~~-~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNVS--AIA-GLQ 107 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSCCG--GGT-TCT
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCcCCCch--hhc-CCC
Confidence 45577788888888877743 3 57778888888888887765544 677788888888888776643 455 778
Q ss_pred CCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCC
Q 037679 104 NFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNL 183 (693)
Q Consensus 104 ~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i 183 (693)
+|++|++++|+++.++. ++.+++|++|++++|.++.+.. ...+++|+.|++++|.+.+..++..+++|++|++++|.+
T Consensus 108 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 108 SIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185 (308)
T ss_dssp TCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred CCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCcc
Confidence 88888888888877765 7788888888888888776433 457778888888888877666667888888888888888
Q ss_pred CCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCC
Q 037679 184 SGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQG 234 (693)
Q Consensus 184 ~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~ 234 (693)
++..+ +..++ +|+.|++++|.+....+ +..+++|++|++++|+++.
T Consensus 186 ~~~~~--l~~l~-~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLP-NLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCT-TCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCC-CCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 86543 77788 88888888888887764 7788888899888888764
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=1.8e-19 Score=181.73 Aligned_cols=180 Identities=26% Similarity=0.288 Sum_probs=112.5
Q ss_pred hccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCC
Q 037679 24 IRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLP 103 (693)
Q Consensus 24 ~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~ 103 (693)
+..+++++.++++++.++.+ |..+. ++++.|++++|.+.+..+.. |.++++|++|++++|.++..... . .++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~--~-~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLAT--LMPYTRLTQLNLDRAELTKLQVD--G-TLP 77 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGG--GTTCTTCCEEECTTSCCCEEECC--S-CCT
T ss_pred ccccCCccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHH--hhcCCCCCEEECCCCccCcccCC--C-CCC
Confidence 55667777777777777633 33332 56777777777776665555 77777777777777777655443 2 677
Q ss_pred CCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCC
Q 037679 104 NFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNL 183 (693)
Q Consensus 104 ~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i 183 (693)
+|+.|++++|+++.+|..++.+++|++|++++|+++.++...+ ..+++|++|++++|.+
T Consensus 78 ~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~---------------------~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL---------------------RGLGELQELYLKGNEL 136 (290)
T ss_dssp TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTT---------------------TTCTTCCEEECTTSCC
T ss_pred cCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHH---------------------cCCCCCCEEECCCCCC
Confidence 7777777777777777777777777777777777776443322 2344444455555555
Q ss_pred CCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCC
Q 037679 184 SGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQ 233 (693)
Q Consensus 184 ~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~ 233 (693)
++..+..|..++ +|+.|++++|++..+++..|..+++|++|++++|+++
T Consensus 137 ~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 137 KTLPPGLLTPTP-KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCCCTTTTTTCT-TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CccChhhccccc-CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 444444445555 5555555555555555555555555555555555553
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=1.8e-19 Score=181.80 Aligned_cols=203 Identities=22% Similarity=0.171 Sum_probs=125.6
Q ss_pred ccCCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCc
Q 037679 444 IFQLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLE 523 (693)
Q Consensus 444 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 523 (693)
+.++++++++++.++ .++..++.+. +.++.|++++|.+.+..+..|..+++|++|++++|.++...+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 446677777777776 3443333332 467777777777776666667777777777777776664322 25667777
Q ss_pred EEEeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEcc
Q 037679 524 HLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFP 603 (693)
Q Consensus 524 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~ 603 (693)
+|++++|.+. ..|..+..+++|+.|++++|++....++.|..+++|+.|++++|.+...++.. +..+++|++|+++
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL---LTPTPKLEKLSLA 156 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT---TTTCTTCCEEECT
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh---cccccCCCEEECC
Confidence 7777777763 44555666677777777777766665556666666667766666666544322 2455666666666
Q ss_pred CCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCC
Q 037679 604 YCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLS 656 (693)
Q Consensus 604 ~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 656 (693)
+|+++...+..+..+++|++|++++|.++ .+|..+...++|+.+++++|++.
T Consensus 157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 66666444444555666666666666665 44545555556666666666654
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1.2e-19 Score=184.91 Aligned_cols=210 Identities=23% Similarity=0.358 Sum_probs=152.8
Q ss_pred EccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccCC
Q 037679 34 RLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSC 113 (693)
Q Consensus 34 ~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 113 (693)
.+..+.+.+. -.+.++++|++|++++|.+.... . +..+++|++|++++|.+....+ +. .+++|++|++++|
T Consensus 25 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~l~--~--~~~l~~L~~L~L~~n~i~~~~~--~~-~l~~L~~L~L~~n 95 (308)
T 1h6u_A 25 AAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIE--G--VQYLNNLIGLELKDNQITDLAP--LK-NLTKITELELSGN 95 (308)
T ss_dssp HTTCSSTTSE--ECHHHHHTCCEEECTTSCCCCCT--T--GGGCTTCCEEECCSSCCCCCGG--GT-TCCSCCEEECCSC
T ss_pred HhCCCCcCce--ecHHHcCCcCEEEeeCCCccCch--h--hhccCCCCEEEccCCcCCCChh--Hc-cCCCCCEEEccCC
Confidence 4455555433 23556778888888888776542 3 6778888888888888776665 54 7888888888888
Q ss_pred CCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCccccccc
Q 037679 114 NLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNLSGMLPECLGN 193 (693)
Q Consensus 114 ~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~ 193 (693)
+++.++ .++.+++|++|++++|.++.++ ....+++|++|++++|.+.+..++..+++|++|++++|.+++..+ +..
T Consensus 96 ~l~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~ 171 (308)
T 1h6u_A 96 PLKNVS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LAN 171 (308)
T ss_dssp CCSCCG-GGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred cCCCch-hhcCCCCCCEEECCCCCCCCch-hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh--hcC
Confidence 888775 4778888888888888887743 345778888888888888766666677888888888888876433 777
Q ss_pred ccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeeecccccCCCCCCCccCCCCCCceEEecCCCcccCC
Q 037679 194 FSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGN 273 (693)
Q Consensus 194 ~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 273 (693)
++ +|+.|++++|.+..+.+ +..+++|++|++++|++++ .+ .+..+++|+.|++++|+++ .
T Consensus 172 l~-~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-------------~~---~l~~l~~L~~L~l~~N~i~-~ 231 (308)
T 1h6u_A 172 LS-KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-------------VS---PLANTSNLFIVTLTNQTIT-N 231 (308)
T ss_dssp CT-TCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB-------------CG---GGTTCTTCCEEEEEEEEEE-C
T ss_pred CC-CCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc-------------cc---cccCCCCCCEEEccCCeee-c
Confidence 77 88888888888877654 6778888888888887752 11 2366788888888888876 4
Q ss_pred CCC
Q 037679 274 LPS 276 (693)
Q Consensus 274 ~~~ 276 (693)
.|.
T Consensus 232 ~~~ 234 (308)
T 1h6u_A 232 QPV 234 (308)
T ss_dssp CCE
T ss_pred CCe
Confidence 443
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=5.4e-20 Score=188.00 Aligned_cols=230 Identities=18% Similarity=0.176 Sum_probs=177.1
Q ss_pred CCCcceeecccCCCcCCCc---ccccccccCCeeEecccccCCCchhhh--hcCCCCcEEeccCCccccccc----cccc
Q 037679 447 LPNLQFLGVMKNPNLTGYL---PQFQKSSLLEDLRLSYTRFSGKIPDSI--ENLESLSYLGISDCSFIGKIP----SSLF 517 (693)
Q Consensus 447 ~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~ 517 (693)
...++.+.+..+....... ..+...++|++|++++|.+.+..+..+ ..+++|++|++++|.+....+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3446666666653211111 123345668889999888887777776 788899999999988775433 3345
Q ss_pred ccCCCcEEEeeCCcCCCCccccccCCccccEEEecCcccccc--c--hhccCCCCCCcEEecccCCCCccccchhHhhhc
Q 037679 518 NLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSST--L--QASLGNLTQLDSLTISNSNFSRLMSSSLSWLTN 593 (693)
Q Consensus 518 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~--~--~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~ 593 (693)
.+++|++|++++|.+.+..+..+..+++|++|++++|++.+. . ...+..+++|++|++++|.++.........+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 789999999999999887778889999999999999987653 1 223468899999999999987544322222467
Q ss_pred CCCCcEEEccCCCCCCcccccccCC---CCCCEEEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCC
Q 037679 594 LNQLTSLNFPYCNLNNEIPFGISNL---TQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQ 670 (693)
Q Consensus 594 l~~L~~L~l~~~~l~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 670 (693)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|+.|++++|++.+ +|. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCcc
Confidence 8999999999999998777767666 79999999999998 6676664 899999999999985 344 68899999
Q ss_pred eEEccCCcccC
Q 037679 671 SLQLSSNQLEG 681 (693)
Q Consensus 671 ~L~l~~n~~~~ 681 (693)
+|++++|++..
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999973
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=1.6e-20 Score=194.49 Aligned_cols=255 Identities=17% Similarity=0.195 Sum_probs=200.4
Q ss_pred eEEEEecCCCcccccCccccCC--CCcceeecccCCCcCCCcccccccccCCeeEecccccCCC-chhhhhcCCCCcEEe
Q 037679 426 WKIVLAGGCGLQGEFPQEIFQL--PNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGK-IPDSIENLESLSYLG 502 (693)
Q Consensus 426 ~~~~~~~~c~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~ 502 (693)
|+.++++++.+. +..+..+ +.++.|++.++ .+....+.+..+++|++|++++|.+.+. .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 677888777655 3445555 89999999998 4555556677899999999999998754 667788999999999
Q ss_pred ccCCcccccccccccccCCCcEEEeeCC-cCCCC-ccccccCCccccEEEecCc-ccccc-chhccCCCC-CCcEEeccc
Q 037679 503 ISDCSFIGKIPSSLFNLTKLEHLYLSGN-RFLDE-LPTSIGNLASLKALEISSF-NFSST-LQASLGNLT-QLDSLTISN 577 (693)
Q Consensus 503 l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~ls~ 577 (693)
+++|.++...+..+..+++|++|++++| .+.+. .+..+..+++|++|++++| .+.+. .+..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 9999988778888889999999999999 56542 4556788999999999999 88765 456678899 999999999
Q ss_pred C--CCCccccchhHhhhcCCCCcEEEccCCC-CCCcccccccCCCCCCEEEccCCc-cCCCccccccCcCcccEEeccCc
Q 037679 578 S--NFSRLMSSSLSWLTNLNQLTSLNFPYCN-LNNEIPFGISNLTQLTALDLSYNQ-LTGPIPYSLMKLKKVSSLLLGFN 653 (693)
Q Consensus 578 n--~l~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n 653 (693)
| .+++.. ....+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+.++++|+.|++++|
T Consensus 205 ~~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 205 YRKNLQKSD--LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGSCHHH--HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CcccCCHHH--HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9 444221 12235679999999999999 776777788999999999999995 33233346788999999999999
Q ss_pred cCCCCcchhhcCCCCCCeEEccCCcccCCccCcccc
Q 037679 654 QLSGRIPVEISNLTQLQSLQLSSNQLEGSVPSSIFE 689 (693)
Q Consensus 654 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~ 689 (693)
+.+.....+. ..++.|++++|.+++..|..+.+
T Consensus 283 -i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 283 -VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp -SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred -cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 5433333332 34777789999999999887654
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=8.9e-20 Score=186.40 Aligned_cols=223 Identities=17% Similarity=0.224 Sum_probs=172.7
Q ss_pred CccEEEcccccccCccch---hhccCCCCcEEEccCCcCCCCCCccc--cCCCCCcEEECCCCcCCCcccHH--HHhhcC
Q 037679 5 KLSTLYLQHNQLTGHIPV---EIRKLTQLQIVRLAENQLEGSVPSSI--FELRNLQALDLSNNNLSGTVDLN--MLLLNL 77 (693)
Q Consensus 5 ~l~~L~ls~~~l~~~~~~---~~~~~~~L~~L~ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n~~~~~~~~~--~~l~~l 77 (693)
.++.+.+.++.++..... .+..+++|++|++++|.+.+..+..+ .++++|++|++++|++.+..+.. ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 467788887776532111 12335779999999999988888887 88999999999999988654411 125578
Q ss_pred CCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCc---hhh--hhhcCCCccEEEcCCCCCCCCCCC---c-cCC
Q 037679 78 KSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSE---FPY--FLHNQDELVSLDLSSNKIAGQDLL---V-LPW 148 (693)
Q Consensus 78 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~---~~~--~l~~l~~L~~L~L~~~~~~~~~~~---~-~~~ 148 (693)
++|++|++++|.+....+..+. .+++|++|++++|++.. ++. .++.+++|++|++++|.++.++.. . ..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 9999999999999888877777 89999999999998763 332 347889999999999998764332 1 367
Q ss_pred CCCcEEeCCCCCCCCCCC--CCCC---CCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCcc
Q 037679 149 SKMNTLDLGFNKLQGPLP--VPSL---NGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLM 223 (693)
Q Consensus 149 ~~L~~L~l~~n~~~~~~~--~~~l---~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~ 223 (693)
++|++|++++|.+.+..+ +..+ ++|++|++++|.++. .|..+. + +|+.|++++|+++.++. +..+++|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~-~L~~L~Ls~N~l~~~~~--~~~l~~L~ 297 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--A-KLRVLDLSSNRLNRAPQ--PDELPEVD 297 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--S-CCSCEECCSCCCCSCCC--TTSCCCCS
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--C-CCCEEECCCCcCCCCch--hhhCCCcc
Confidence 899999999999987644 3343 799999999999994 466554 6 89999999999987732 67889999
Q ss_pred EEEccCCcCCC
Q 037679 224 MIDFSNNSLQG 234 (693)
Q Consensus 224 ~L~l~~n~l~~ 234 (693)
.|++++|++++
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999874
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=4.1e-20 Score=181.33 Aligned_cols=178 Identities=20% Similarity=0.267 Sum_probs=123.2
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCc-CCCcccHHHHhhcCCCCCEEECCC-CcCCchhhhhhhcCCCCC
Q 037679 28 TQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNN-LSGTVDLNMLLLNLKSLTALVLSS-NKLSLLTRATLNTNLPNF 105 (693)
Q Consensus 28 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~~l~~L 105 (693)
++|++|++++|.++++.+.+|.++++|++|++++|+ +....+.. |.++++|++|++++ |.++...+..|. ++++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~--f~~l~~L~~L~l~~~n~l~~i~~~~f~-~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS--FYNLSKVTHIEIRNTRNLTYIDPDALK-ELPLL 107 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT--EESCTTCCEEEEEEETTCCEECTTSEE-CCTTC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH--cCCCcCCcEEECCCCCCeeEcCHHHhC-CCCCC
Confidence 488899999998887777788889999999999887 66555545 78888999999988 888877777776 88888
Q ss_pred cEEeccCCCCCchhhhhhcCCCcc---EEEcCCC-CCCCCCCCcc-CCCCCc-EEeCCCCCCCCCCCCCCCCCCCEEeCC
Q 037679 106 TVIGFNSCNLSEFPYFLHNQDELV---SLDLSSN-KIAGQDLLVL-PWSKMN-TLDLGFNKLQGPLPVPSLNGLQALDLS 179 (693)
Q Consensus 106 ~~L~l~~~~l~~~~~~l~~l~~L~---~L~L~~~-~~~~~~~~~~-~~~~L~-~L~l~~n~~~~~~~~~~l~~L~~L~L~ 179 (693)
++|++++|+++.+|. ++.+++|+ +|++++| .++.++...+ ++++|+ +|++++|
T Consensus 108 ~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-------------------- 166 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-------------------- 166 (239)
T ss_dssp CEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC--------------------
T ss_pred CEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC--------------------
Confidence 888888888888776 77777777 8888888 7776544332 444455 5544444
Q ss_pred CCCCCCCcccccccccccccEEEccccc-ccccccccccCC-CCccEEEccCCcCC
Q 037679 180 YNNLSGMLPECLGNFSVELSALKLQANN-FYRIVPQTFMNG-TNLMMIDFSNNSLQ 233 (693)
Q Consensus 180 ~~~i~~~~~~~~~~~~~~L~~L~L~~~~-i~~~~~~~~~~~-~~L~~L~l~~n~l~ 233 (693)
.++.+.+..+.. . +|+.|++++|+ +..+++..|..+ ++|++|++++|+++
T Consensus 167 --~l~~i~~~~~~~-~-~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 167 --GFTSVQGYAFNG-T-KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp --CCCEECTTTTTT-C-EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred --CCcccCHhhcCC-C-CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 444222223333 4 55556665553 555555555555 56666666655553
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=2.6e-20 Score=192.99 Aligned_cols=247 Identities=21% Similarity=0.178 Sum_probs=192.4
Q ss_pred CccEEEcccccccCccchhhccC--CCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCc-ccHHHHhhcCCCCC
Q 037679 5 KLSTLYLQHNQLTGHIPVEIRKL--TQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGT-VDLNMLLLNLKSLT 81 (693)
Q Consensus 5 ~l~~L~ls~~~l~~~~~~~~~~~--~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~~~l~~l~~L~ 81 (693)
.+++++++++.+. +..+..+ +++++|++++|.+.+..+. +.++++|++|++++|.+.+. .+.. +..+++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~--~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI--LSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH--HTTBCCCS
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH--HhhCCCCC
Confidence 3789999998876 5677777 9999999999999876654 56799999999999997644 4434 88999999
Q ss_pred EEECCCCcCCchhhhhhhcCCCCCcEEeccCC-CCC--chhhhhhcCCCccEEEcCCC-CCCCCCCC--ccCCC-CCcEE
Q 037679 82 ALVLSSNKLSLLTRATLNTNLPNFTVIGFNSC-NLS--EFPYFLHNQDELVSLDLSSN-KIAGQDLL--VLPWS-KMNTL 154 (693)
Q Consensus 82 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~--~~~~~l~~l~~L~~L~L~~~-~~~~~~~~--~~~~~-~L~~L 154 (693)
+|++++|.+.+..+..+. .+++|++|++++| .++ .++..++.+++|++|++++| .++..... ...++ +|++|
T Consensus 122 ~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred EEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 999999999888888888 8999999999999 788 47778999999999999999 88753222 24788 99999
Q ss_pred eCCCCC--CCC-CC--CCCCCCCCCEEeCCCCC-CCCCcccccccccccccEEEccccc-ccccccccccCCCCccEEEc
Q 037679 155 DLGFNK--LQG-PL--PVPSLNGLQALDLSYNN-LSGMLPECLGNFSVELSALKLQANN-FYRIVPQTFMNGTNLMMIDF 227 (693)
Q Consensus 155 ~l~~n~--~~~-~~--~~~~l~~L~~L~L~~~~-i~~~~~~~~~~~~~~L~~L~L~~~~-i~~~~~~~~~~~~~L~~L~l 227 (693)
++++|. ++. .. ....+++|++|++++|. +++..+..+..++ +|+.|++++|. +.......+..+++|++|++
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC-CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence 999994 441 11 11278899999999999 7767777888888 99999999995 33333346788999999999
Q ss_pred cCCcCCCceeeecccccCCCCCCCccCCCC-CCceEEecCCCcccCCCCCc
Q 037679 228 SNNSLQGRALILKFNNFHGEIEEPQTGFEF-PKLRIIDLSHNRFTGNLPSK 277 (693)
Q Consensus 228 ~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~ 277 (693)
++| +++..+ ..+ ..++.|++++|++++..|..
T Consensus 280 ~~~-i~~~~~-----------------~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 280 FGI-VPDGTL-----------------QLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp TTS-SCTTCH-----------------HHHHHHSTTSEESCCCSCCTTCSS
T ss_pred cCc-cCHHHH-----------------HHHHhhCcceEEecccCccccCCc
Confidence 988 542110 111 22445557888888777654
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=5.3e-20 Score=192.42 Aligned_cols=260 Identities=17% Similarity=0.108 Sum_probs=196.3
Q ss_pred EEEcccccccCccchhhccCCCCcEEEccCCcCCCCCC----ccccCCC-CCcEEECCCCcCCCcccHHHHhhcC-----
Q 037679 8 TLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVP----SSIFELR-NLQALDLSNNNLSGTVDLNMLLLNL----- 77 (693)
Q Consensus 8 ~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~----~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~l~~l----- 77 (693)
..++++|.+++.+|..+...++|++|++++|.+++..+ ++|.+++ +|++|++++|++.+..+.. +..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~--l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE--LVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH--HHHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH--HHHHHhccC
Confidence 56889999998888877777789999999999997777 8889998 9999999999998766544 5443
Q ss_pred CCCCEEECCCCcCCchhhhhhhc---CC-CCCcEEeccCCCCCchhh-----hhhc-CCCccEEEcCCCCCCCCCCCc--
Q 037679 78 KSLTALVLSSNKLSLLTRATLNT---NL-PNFTVIGFNSCNLSEFPY-----FLHN-QDELVSLDLSSNKIAGQDLLV-- 145 (693)
Q Consensus 78 ~~L~~L~L~~~~~~~~~~~~~~~---~l-~~L~~L~l~~~~l~~~~~-----~l~~-l~~L~~L~L~~~~~~~~~~~~-- 145 (693)
++|++|++++|.++...+..+.. .+ ++|++|++++|+++..+. .+.. .++|++|++++|.+++.+...
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 99999999999998777665441 34 899999999999985543 3444 469999999999998644332
Q ss_pred ---cCCC-CCcEEeCCCCCCCCCCCC------CCC-CCCCEEeCCCCCCCCCc----ccccccccccccEEEcccccccc
Q 037679 146 ---LPWS-KMNTLDLGFNKLQGPLPV------PSL-NGLQALDLSYNNLSGML----PECLGNFSVELSALKLQANNFYR 210 (693)
Q Consensus 146 ---~~~~-~L~~L~l~~n~~~~~~~~------~~l-~~L~~L~L~~~~i~~~~----~~~~~~~~~~L~~L~L~~~~i~~ 210 (693)
...+ +|++|++++|.+++..+. ..+ ++|++|++++|.+++.. +..+.....+|+.|+|++|.+..
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 1444 899999999999865432 144 59999999999998643 34444432389999999999987
Q ss_pred ccc----ccccCCCCccEEEccCCcCCCceeeecccccCCCCCCCccCCCCCCceEEecCCCcccCCCCC
Q 037679 211 IVP----QTFMNGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPS 276 (693)
Q Consensus 211 ~~~----~~~~~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 276 (693)
..+ ..+..+++|++|++++|.+....- .+.......+..++.|+.|++++|++.+..+.
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~-------~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSK-------EQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCH-------HHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCH-------HHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 655 345678999999999998442100 00001112346789999999999999976543
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=4.7e-20 Score=192.78 Aligned_cols=254 Identities=17% Similarity=0.198 Sum_probs=190.0
Q ss_pred EEecCCCcccccCccccCCCCcceeecccCCCcCCCc----ccccccc-cCCeeEecccccCCCchhhhhcC-----CCC
Q 037679 429 VLAGGCGLQGEFPQEIFQLPNLQFLGVMKNPNLTGYL----PQFQKSS-LLEDLRLSYTRFSGKIPDSIENL-----ESL 498 (693)
Q Consensus 429 ~~~~~c~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L 498 (693)
..++.+.+.+.+|..+...++|++|++++|....... ..+..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3456666777777766667779999999996433333 4577777 89999999999987777777665 899
Q ss_pred cEEeccCCcccccccccc----ccc-CCCcEEEeeCCcCCCCccccc----cC-CccccEEEecCccccccch----hcc
Q 037679 499 SYLGISDCSFIGKIPSSL----FNL-TKLEHLYLSGNRFLDELPTSI----GN-LASLKALEISSFNFSSTLQ----ASL 564 (693)
Q Consensus 499 ~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~l~~~~l~~~~~~~~----~~-l~~L~~L~l~~~~~~~~~~----~~l 564 (693)
++|++++|.++...+..+ ..+ ++|++|++++|.+.+..+..+ .. .++|++|++++|.+..... ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 999999999887665543 344 899999999999876665443 33 3699999999999885433 344
Q ss_pred CCCC-CCcEEecccCCCCccccchhH-hhhcC-CCCcEEEccCCCCCCc----ccccccC-CCCCCEEEccCCccCCCcc
Q 037679 565 GNLT-QLDSLTISNSNFSRLMSSSLS-WLTNL-NQLTSLNFPYCNLNNE----IPFGISN-LTQLTALDLSYNQLTGPIP 636 (693)
Q Consensus 565 ~~l~-~L~~L~ls~n~l~~~~~~~~~-~l~~l-~~L~~L~l~~~~l~~~----~~~~l~~-l~~L~~L~l~~n~l~~~~~ 636 (693)
...+ +|++|++++|.++...+..+. .+..+ ++|++|++++|.+.+. ++..+.. .++|++|++++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 5555 899999999998776554333 35566 4999999999998863 3444544 4699999999999986544
Q ss_pred ----ccccCcCcccEEeccCccCCCC-------cchhhcCCCCCCeEEccCCcccCC
Q 037679 637 ----YSLMKLKKVSSLLLGFNQLSGR-------IPVEISNLTQLQSLQLSSNQLEGS 682 (693)
Q Consensus 637 ----~~l~~l~~L~~L~l~~n~~~~~-------~~~~l~~l~~L~~L~l~~n~~~~~ 682 (693)
..+..+++|+.|++++|++.+. ++..+..+++|+.||+++|++...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3345678999999999985432 334567788999999999998755
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=4.1e-20 Score=195.25 Aligned_cols=257 Identities=16% Similarity=0.178 Sum_probs=185.3
Q ss_pred ccchhhccCCCCcEEEccCCcCCCCCC----ccccCCCCCcEEECCCCcCC---CcccHH-----HHhhcCCCCCEEECC
Q 037679 19 HIPVEIRKLTQLQIVRLAENQLEGSVP----SSIFELRNLQALDLSNNNLS---GTVDLN-----MLLLNLKSLTALVLS 86 (693)
Q Consensus 19 ~~~~~~~~~~~L~~L~ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~~~---~~~~~~-----~~l~~l~~L~~L~L~ 86 (693)
.++.++..+++|++|++++|.+++..+ .+|.++++|++|++++|.+. +.+|.. ..+..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 466778888999999999998876533 34778899999999987543 233322 124678999999999
Q ss_pred CCcCCch----hhhhhhcCCCCCcEEeccCCCCCc-----hhhhhhcC---------CCccEEEcCCCCCCCCCCCc---
Q 037679 87 SNKLSLL----TRATLNTNLPNFTVIGFNSCNLSE-----FPYFLHNQ---------DELVSLDLSSNKIAGQDLLV--- 145 (693)
Q Consensus 87 ~~~~~~~----~~~~~~~~l~~L~~L~l~~~~l~~-----~~~~l~~l---------~~L~~L~L~~~~~~~~~~~~--- 145 (693)
+|.+... .+..+. .+++|++|++++|.++. ++..+..+ ++|++|++++|.++......
T Consensus 103 ~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLS-KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHH-HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHH-hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9988873 444565 88999999999998873 33344455 89999999999887433331
Q ss_pred --cCCCCCcEEeCCCCCCCCCC-------CCCCCCCCCEEeCCCCCCC----CCcccccccccccccEEEccccccccc-
Q 037679 146 --LPWSKMNTLDLGFNKLQGPL-------PVPSLNGLQALDLSYNNLS----GMLPECLGNFSVELSALKLQANNFYRI- 211 (693)
Q Consensus 146 --~~~~~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~L~~~~i~----~~~~~~~~~~~~~L~~L~L~~~~i~~~- 211 (693)
..+++|++|++++|.+.... .+..+++|+.|++++|.++ ...+..+..++ +|+.|+|++|.+...
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-NLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-TCCEEECTTCCCCHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-CcCEEECCCCCCchhh
Confidence 26789999999999887321 4457899999999999985 45677788888 999999999999766
Q ss_pred ---cccccc--CCCCccEEEccCCcCCCceeeecccccCCCCCCCccCCCCCCceEEecCCCcccCCCC--Ccccccchh
Q 037679 212 ---VPQTFM--NGTNLMMIDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLP--SKHFHCWNA 284 (693)
Q Consensus 212 ---~~~~~~--~~~~L~~L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~l~~ 284 (693)
.+..+. .+++|++|++++|+++..... .++..+ ..++++|+.|++++|++++..+ ..+...++.
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~--------~l~~~l-~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVR--------TLKTVI-DEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 331 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH--------HHHHHH-HHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHH--------HHHHHH-HhcCCCceEEEccCCcCCcchhHHHHHHHHhhh
Confidence 344553 389999999999998631000 122221 1457899999999999997664 333444444
Q ss_pred hh
Q 037679 285 MK 286 (693)
Q Consensus 285 l~ 286 (693)
++
T Consensus 332 ~~ 333 (386)
T 2ca6_A 332 RG 333 (386)
T ss_dssp HT
T ss_pred cC
Confidence 43
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=1.4e-20 Score=198.75 Aligned_cols=246 Identities=17% Similarity=0.182 Sum_probs=188.3
Q ss_pred ccCccccCCCCcceeecccCCCcCCCc----ccccccccCCeeEecccccCC---Cchhh-------hhcCCCCcEEecc
Q 037679 439 EFPQEIFQLPNLQFLGVMKNPNLTGYL----PQFQKSSLLEDLRLSYTRFSG---KIPDS-------IENLESLSYLGIS 504 (693)
Q Consensus 439 ~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~---~~~~~-------~~~l~~L~~L~l~ 504 (693)
.++..+..+++|++|++++|....... ..+..+++|++|++++|.+.. ..+.. +..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 456667778999999999984332222 236688899999999875442 23333 3678999999999
Q ss_pred CCcccc----cccccccccCCCcEEEeeCCcCCCCcccccc----CC---------ccccEEEecCcccccc-ch---hc
Q 037679 505 DCSFIG----KIPSSLFNLTKLEHLYLSGNRFLDELPTSIG----NL---------ASLKALEISSFNFSST-LQ---AS 563 (693)
Q Consensus 505 ~~~~~~----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~----~l---------~~L~~L~l~~~~~~~~-~~---~~ 563 (693)
+|.+.. .++..+..+++|++|++++|.+....+..+. .+ ++|++|++++|++... .+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 998886 3666788899999999999998544333333 33 8999999999998733 22 35
Q ss_pred cCCCCCCcEEecccCCCCccccc-hhH-hhhcCCCCcEEEccCCCCC----CcccccccCCCCCCEEEccCCccCCC---
Q 037679 564 LGNLTQLDSLTISNSNFSRLMSS-SLS-WLTNLNQLTSLNFPYCNLN----NEIPFGISNLTQLTALDLSYNQLTGP--- 634 (693)
Q Consensus 564 l~~l~~L~~L~ls~n~l~~~~~~-~~~-~l~~l~~L~~L~l~~~~l~----~~~~~~l~~l~~L~~L~l~~n~l~~~--- 634 (693)
+..+++|++|++++|.+...... ..+ .+..+++|++|++++|.++ ..++..+..+++|++|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 67888999999999988743211 122 5678899999999999986 45677888999999999999999755
Q ss_pred -ccccccC--cCcccEEeccCccCCC----Ccchhh-cCCCCCCeEEccCCcccCCcc
Q 037679 635 -IPYSLMK--LKKVSSLLLGFNQLSG----RIPVEI-SNLTQLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 635 -~~~~l~~--l~~L~~L~l~~n~~~~----~~~~~l-~~l~~L~~L~l~~n~~~~~~p 684 (693)
++..+.. +++|+.|++++|++.+ .+|..+ .++++|++|++++|++.+..|
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 4556643 8999999999999986 477777 668999999999999986654
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=3.3e-19 Score=174.84 Aligned_cols=198 Identities=19% Similarity=0.201 Sum_probs=138.0
Q ss_pred ccCCeeEecccccCCCchhhhhcCCCCcEEeccCCc-ccccccccccccCCCcEEEeeC-CcCCCCccccccCCccccEE
Q 037679 472 SLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCS-FIGKIPSSLFNLTKLEHLYLSG-NRFLDELPTSIGNLASLKAL 549 (693)
Q Consensus 472 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L 549 (693)
..+++|++++|.+++..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |.+....+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 367888888888876666677778888888888885 6666666777888888888887 77766555667778888888
Q ss_pred EecCccccccchhccCCCCCCc---EEecccC-CCCccccchhHhhhcCCCCc-EEEccCCCCCCcccccccCCCCCCEE
Q 037679 550 EISSFNFSSTLQASLGNLTQLD---SLTISNS-NFSRLMSSSLSWLTNLNQLT-SLNFPYCNLNNEIPFGISNLTQLTAL 624 (693)
Q Consensus 550 ~l~~~~~~~~~~~~l~~l~~L~---~L~ls~n-~l~~~~~~~~~~l~~l~~L~-~L~l~~~~l~~~~~~~l~~l~~L~~L 624 (693)
++++|.+.+.. + +..+++|+ +|++++| .+...++.. +..+++|+ +|++++|.++...+..+.. ++|++|
T Consensus 111 ~l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~---~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L 184 (239)
T 2xwt_C 111 GIFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNA---FQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAV 184 (239)
T ss_dssp EEEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTT---TTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEE
T ss_pred eCCCCCCcccc-c-cccccccccccEEECCCCcchhhcCccc---ccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEE
Confidence 88888776632 2 66677776 7888877 666554432 35667777 7888777777333333333 677778
Q ss_pred EccCCc-cCCCccccccCc-CcccEEeccCccCCCCcchhhcCCCCCCeEEccCCc
Q 037679 625 DLSYNQ-LTGPIPYSLMKL-KKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQ 678 (693)
Q Consensus 625 ~l~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 678 (693)
++++|+ +++..+..+.++ ++|+.|++++|++. .+|.. .+++|+.|+++++.
T Consensus 185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred EcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 887774 765555667777 77788888877776 34443 56777777777653
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=4.1e-18 Score=168.27 Aligned_cols=179 Identities=22% Similarity=0.241 Sum_probs=125.7
Q ss_pred cCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEec
Q 037679 473 LLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEIS 552 (693)
Q Consensus 473 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 552 (693)
..++++++++.+.. .+..+. ++++.|++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 35677887777773 333333 577888888887776666677778888888888888776666667777888888888
Q ss_pred CccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccC
Q 037679 553 SFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLT 632 (693)
Q Consensus 553 ~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~ 632 (693)
+|.+....+..+..+++|++|++++|.+...++.. +..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV---FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhH---hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 87777666666777777777777777776554432 345667777777777776555556667777777777777776
Q ss_pred CCccccccCcCcccEEeccCccCCC
Q 037679 633 GPIPYSLMKLKKVSSLLLGFNQLSG 657 (693)
Q Consensus 633 ~~~~~~l~~l~~L~~L~l~~n~~~~ 657 (693)
+..+..+..+++|+.|++++|++..
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ccCHHHHhCCCCCCEEEeeCCceeC
Confidence 5555566667777777777777764
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=7.8e-18 Score=166.26 Aligned_cols=177 Identities=21% Similarity=0.248 Sum_probs=92.3
Q ss_pred ccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 6 l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
.++++++++.++ .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+.+..+.. |.++++|++|++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L 90 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV--FDDLTELGTLGL 90 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT--TTTCTTCCEEEC
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH--hccCCcCCEEEC
Confidence 455666666655 3343333 45666666666666555555666666666666666655544433 555555666665
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPL 165 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 165 (693)
++|.++...+.. ++.+++|++|++++|.++.++...
T Consensus 91 ~~n~l~~~~~~~------------------------~~~l~~L~~L~L~~N~l~~~~~~~-------------------- 126 (251)
T 3m19_A 91 ANNQLASLPLGV------------------------FDHLTQLDKLYLGGNQLKSLPSGV-------------------- 126 (251)
T ss_dssp TTSCCCCCCTTT------------------------TTTCTTCCEEECCSSCCCCCCTTT--------------------
T ss_pred CCCcccccChhH------------------------hcccCCCCEEEcCCCcCCCcChhH--------------------
Confidence 555555444433 344555555555555554422211
Q ss_pred CCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCC
Q 037679 166 PVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQ 233 (693)
Q Consensus 166 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~ 233 (693)
+..+++|++|++++|.+++..+..+..++ +|+.|++++|.+..+++..|..+++|++|++++|++.
T Consensus 127 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 127 -FDRLTKLKELRLNTNQLQSIPAGAFDKLT-NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp -TTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred -hccCCcccEEECcCCcCCccCHHHcCcCc-CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 11233444444444444444444445555 5555555555555555555555556666666666554
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=4e-18 Score=177.17 Aligned_cols=238 Identities=18% Similarity=0.183 Sum_probs=179.5
Q ss_pred cEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCE-EEC
Q 037679 7 STLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTA-LVL 85 (693)
Q Consensus 7 ~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~-L~L 85 (693)
++++.++++++ .+|..+ .+++++|++++|.|+.+.+++|.++++|++|+|++|++.+.++.. .|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~-~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-VFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT-SBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh-Hhhcchhhhhhhcc
Confidence 67889999998 567666 478999999999999777789999999999999999987666543 3788998876 556
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCC-CCCCCCCCCcc-CC-CCCcEEeCCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSS-NKIAGQDLLVL-PW-SKMNTLDLGFNKL 161 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~-~~~~~~~~~~~-~~-~~L~~L~l~~n~~ 161 (693)
++|.++...+..|. .+++|++|++++|+++.++. .+....++..+++.+ +.+..++...+ .+ ..++.|++++|.+
T Consensus 88 ~~N~l~~l~~~~f~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQ-NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBC-CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhh-hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 67889888888887 99999999999999997765 445667788888865 56776555544 33 4688899999998
Q ss_pred CCCCCC-CCCCCCCEEeCCC-CCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCceeee
Q 037679 162 QGPLPV-PSLNGLQALDLSY-NNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGRALIL 239 (693)
Q Consensus 162 ~~~~~~-~~l~~L~~L~L~~-~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~l 239 (693)
+..... ....+|+++++++ |.++.+.++.|..++ +|+.|++++|+++.+++..|.++++|+.++..+ ++
T Consensus 167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~-~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~--l~------ 237 (350)
T 4ay9_X 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS-GPVILDISRTRIHSLPSYGLENLKKLRARSTYN--LK------ 237 (350)
T ss_dssp CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE-CCSEEECTTSCCCCCCSSSCTTCCEEECTTCTT--CC------
T ss_pred cCCChhhccccchhHHhhccCCcccCCCHHHhccCc-ccchhhcCCCCcCccChhhhccchHhhhccCCC--cC------
Confidence 843322 2557888999875 667766667788888 899999999999988877666554444433322 11
Q ss_pred cccccCCCCCCCccCCCCCCceEEecCCC
Q 037679 240 KFNNFHGEIEEPQTGFEFPKLRIIDLSHN 268 (693)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 268 (693)
..|. +..+++|+.+++.++
T Consensus 238 -------~lP~---l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 238 -------KLPT---LEKLVALMEASLTYP 256 (350)
T ss_dssp -------CCCC---TTTCCSCCEEECSCH
T ss_pred -------cCCC---chhCcChhhCcCCCC
Confidence 2232 356888888888754
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.2e-17 Score=166.57 Aligned_cols=190 Identities=26% Similarity=0.343 Sum_probs=153.7
Q ss_pred EcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCc
Q 037679 10 YLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNK 89 (693)
Q Consensus 10 ~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~ 89 (693)
.+..+.+++.. .+..+++|++|++++|.+.+. ..+..+++|++|++++|++.+..+ +..+++|++|++++|.
T Consensus 30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENK 101 (291)
T ss_dssp HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSC
T ss_pred HhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCc
Confidence 34444454332 245688899999999988855 358889999999999999886654 7889999999999998
Q ss_pred CCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCC
Q 037679 90 LSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPS 169 (693)
Q Consensus 90 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 169 (693)
++.... +. .+++|++|++++|+++.++ .++.+++|++|++++|.++.+ .....+++|+.|++++|.+.+..++..
T Consensus 102 l~~~~~--l~-~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~ 176 (291)
T 1h6t_A 102 VKDLSS--LK-DLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAG 176 (291)
T ss_dssp CCCGGG--GT-TCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTT
T ss_pred CCCChh--hc-cCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchhhcC
Confidence 876443 55 8899999999999998874 588899999999999999875 344588999999999999988777789
Q ss_pred CCCCCEEeCCCCCCCCCcccccccccccccEEEccccccccccccc
Q 037679 170 LNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQT 215 (693)
Q Consensus 170 l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~ 215 (693)
+++|++|++++|.+++. ..+..++ +|+.|++++|.+...+...
T Consensus 177 l~~L~~L~L~~N~i~~l--~~l~~l~-~L~~L~l~~n~i~~~~~~~ 219 (291)
T 1h6t_A 177 LTKLQNLYLSKNHISDL--RALAGLK-NLDVLELFSQECLNKPINH 219 (291)
T ss_dssp CTTCCEEECCSSCCCBC--GGGTTCT-TCSEEEEEEEEEECCCEEC
T ss_pred CCccCEEECCCCcCCCC--hhhccCC-CCCEEECcCCcccCCcccc
Confidence 99999999999999865 3488899 9999999999998754443
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=5.2e-17 Score=163.85 Aligned_cols=192 Identities=21% Similarity=0.312 Sum_probs=160.8
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcE
Q 037679 28 TQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTV 107 (693)
Q Consensus 28 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 107 (693)
..+..+.+..+.+.+. ..+..+++|+.|++++|.+.... . +..+++|++|++++|.++...+ +. .+++|+.
T Consensus 24 ~~~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~--~--~~~l~~L~~L~L~~n~l~~~~~--l~-~l~~L~~ 94 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ--G--IQYLPNVTKLFLNGNKLTDIKP--LA-NLKNLGW 94 (291)
T ss_dssp HHHHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCCT--T--GGGCTTCCEEECCSSCCCCCGG--GT-TCTTCCE
T ss_pred HHHHHHHhcCCCcccc--cchhhcCcccEEEccCCCcccCh--h--HhcCCCCCEEEccCCccCCCcc--cc-cCCCCCE
Confidence 3344455666666643 34678899999999999987653 2 7889999999999999987766 55 9999999
Q ss_pred EeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCc
Q 037679 108 IGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNLSGML 187 (693)
Q Consensus 108 L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i~~~~ 187 (693)
|++++|+++.++. ++.+++|++|++++|.++.+ .....+++|+.|++++|.+.+...+..+++|++|++++|.+++..
T Consensus 95 L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 95 LFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp EECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG
T ss_pred EECCCCcCCCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccch
Confidence 9999999998765 89999999999999999984 345588999999999999998766668999999999999999765
Q ss_pred ccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCc
Q 037679 188 PECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGR 235 (693)
Q Consensus 188 ~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~ 235 (693)
+ +..++ +|+.|++++|.+..+. .+..+++|+.|++++|+++..
T Consensus 173 ~--l~~l~-~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 173 P--LAGLT-KLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp G--GTTCT-TCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECC
T ss_pred h--hcCCC-ccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCC
Confidence 5 88888 9999999999998873 488899999999999988643
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=4.5e-17 Score=155.83 Aligned_cols=180 Identities=22% Similarity=0.226 Sum_probs=94.9
Q ss_pred CeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCc
Q 037679 475 EDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSF 554 (693)
Q Consensus 475 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 554 (693)
+.++.+++.++.. +..+ .+++++|++++|.++...+..+..+++|++|++++|++.+..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4555555555422 2211 245666666666666544445566666666666666665444444555666666666666
Q ss_pred cccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCC
Q 037679 555 NFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGP 634 (693)
Q Consensus 555 ~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 634 (693)
.+....+..+..+++|++|++++|.+....+.. +..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGV---FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhH---hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--
Confidence 665554444555566666666666555433321 234455555555555555433333455555555555555443
Q ss_pred ccccccCcCcccEEeccCccCCCCcchhhcCCC
Q 037679 635 IPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLT 667 (693)
Q Consensus 635 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 667 (693)
..+++|+.|+++.|++.+.+|.+++.++
T Consensus 162 -----~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 -----CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp -----CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred -----cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 1233455555555555555555444443
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=3.3e-17 Score=181.24 Aligned_cols=194 Identities=25% Similarity=0.327 Sum_probs=145.5
Q ss_pred EEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCC
Q 037679 8 TLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSS 87 (693)
Q Consensus 8 ~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~ 87 (693)
.+.+..+.+..+.+ +..+++|+.|++++|.+... + .|.++++|+.|+|++|++.+..+ +..+++|++|+|++
T Consensus 25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCS
T ss_pred HHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcC
Confidence 34455555554433 56678888888888888744 2 58888888888888888876654 67888888888888
Q ss_pred CcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCC
Q 037679 88 NKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPV 167 (693)
Q Consensus 88 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 167 (693)
|.+.... .+. .+++|+.|++++|++..++ .+..+++|++|++++|.++.+ .....+++|+.|++++|.+.+..++
T Consensus 97 N~l~~l~--~l~-~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l 171 (605)
T 1m9s_A 97 NKIKDLS--SLK-DLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL 171 (605)
T ss_dssp SCCCCCT--TST-TCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGGG
T ss_pred CCCCCCh--hhc-cCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchhh
Confidence 8887643 455 8888888888888888765 478888888888888888874 3345778888888888888877677
Q ss_pred CCCCCCCEEeCCCCCCCCCcccccccccccccEEEccccccccccccccc
Q 037679 168 PSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFM 217 (693)
Q Consensus 168 ~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~ 217 (693)
..+++|+.|+|++|.++++ ..+..++ +|+.|+|++|.+...+...+.
T Consensus 172 ~~l~~L~~L~Ls~N~i~~l--~~l~~l~-~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISDL--RALAGLK-NLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp TTCTTCCEEECCSSCCCBC--GGGTTCT-TCSEEECCSEEEECCCCCCCS
T ss_pred ccCCCCCEEECcCCCCCCC--hHHccCC-CCCEEEccCCcCcCCcccccc
Confidence 7888888888888888754 3577777 888888888888765444433
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=1.9e-17 Score=172.08 Aligned_cols=219 Identities=17% Similarity=0.130 Sum_probs=174.3
Q ss_pred CCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCC-CCccccCCCCCcE-EECCCCcCCCcccHHHHhhcCCCCC
Q 037679 4 NKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGS-VPSSIFELRNLQA-LDLSNNNLSGTVDLNMLLLNLKSLT 81 (693)
Q Consensus 4 ~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~-~~~~~~~l~~L~~-L~Ls~n~~~~~~~~~~~l~~l~~L~ 81 (693)
+++++|++++|.|+.+.+++|.++++|++|++++|.+.+. .+.+|.++++|+. +.++.|++....+.. |.++++|+
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~--f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA--FQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS--BCCCTTCC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh--hhhccccc
Confidence 5799999999999977778999999999999999998654 4568999999876 556678888777766 89999999
Q ss_pred EEECCCCcCCchhhhhhhcCCCCCcEEeccC-CCCCchhh-hhhcC-CCccEEEcCCCCCCCCCCCccCCCCCcEEeCCC
Q 037679 82 ALVLSSNKLSLLTRATLNTNLPNFTVIGFNS-CNLSEFPY-FLHNQ-DELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGF 158 (693)
Q Consensus 82 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~-~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~ 158 (693)
+|++++|.+....+..+. ...++..+++.+ +++..++. .+..+ ..+++|++++|.++.++...+...+|+++.+.+
T Consensus 108 ~L~l~~n~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp EEEEEEECCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred cccccccccccCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence 999999999887776666 777888899865 57887765 44554 468999999999999888888889999999986
Q ss_pred -CCCCCCC--CCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCC
Q 037679 159 -NKLQGPL--PVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNN 230 (693)
Q Consensus 159 -n~~~~~~--~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n 230 (693)
|.++..- .+..+++|++|++++|.++.+.+..+. +|+.|.+.++...+..| .+..+++|+.+++.++
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~----~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE----NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT----TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc----cchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 5555332 235889999999999999976555544 55566655554434444 4778999999998754
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=4e-17 Score=156.21 Aligned_cols=178 Identities=24% Similarity=0.269 Sum_probs=144.2
Q ss_pred cEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECC
Q 037679 7 STLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLS 86 (693)
Q Consensus 7 ~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~ 86 (693)
+.++.++++++ .+|..+ .++|++|++++|.++++.+..|.++++|++|++++|++.+..+.. |..+++|++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--FNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEECC
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh--cCCCCCcCEEECC
Confidence 57888888887 445444 468999999999999888888999999999999999998766655 7899999999999
Q ss_pred CCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCCCCCCCCCCCcc-CCCCCcEEeCCCCCCCCC
Q 037679 87 SNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSSNKIAGQDLLVL-PWSKMNTLDLGFNKLQGP 164 (693)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~ 164 (693)
+|.++...+..+. .+++|++|++++|+++.++. .++.+++|++|++++|.++.++...+ .+++|+.|++++|.+..
T Consensus 85 ~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 85 TNQLQSLPNGVFD-KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp SSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred CCcCCccCHhHhc-CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence 9999987776676 99999999999999998776 47899999999999999998665543 67778888888776552
Q ss_pred CCCCCCCCCCEEeCCCCCCCCCccccccccc
Q 037679 165 LPVPSLNGLQALDLSYNNLSGMLPECLGNFS 195 (693)
Q Consensus 165 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~ 195 (693)
.+++|+.|+++.|.+++..|..++.+.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 345677777777777766666665554
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=9.8e-17 Score=151.97 Aligned_cols=152 Identities=15% Similarity=0.218 Sum_probs=97.3
Q ss_pred ccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCC
Q 037679 25 RKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPN 104 (693)
Q Consensus 25 ~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~ 104 (693)
..+++|++|++++|.+.+ .+ .+..+++|++|++++|.+.... . +..+++|++|++++|.++...+..+. .+++
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~~~--~--l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATNYN--P--ISGLSNLERLRIMGKDVTSDKIPNLS-GLTS 113 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSCCG--G--GTTCTTCCEEEEECTTCBGGGSCCCT-TCTT
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCcch--h--hhcCCCCCEEEeECCccCcccChhhc-CCCC
Confidence 455667777777776663 33 5666777777777777554332 2 56677777777777776665555565 6777
Q ss_pred CcEEeccCCCCCc-hhhhhhcCCCccEEEcCCCC-CCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCC
Q 037679 105 FTVIGFNSCNLSE-FPYFLHNQDELVSLDLSSNK-IAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNN 182 (693)
Q Consensus 105 L~~L~l~~~~l~~-~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~ 182 (693)
|++|++++|+++. .+..++.+++|++|++++|. ++.++ ....+++|++|++++|.+.+...+..+++|++|++++|.
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC-
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcc
Confidence 7777777777663 45566777777777777776 55533 334667777777777777655555577777777777777
Q ss_pred CC
Q 037679 183 LS 184 (693)
Q Consensus 183 i~ 184 (693)
|.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 65
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=1.9e-16 Score=173.09 Aligned_cols=167 Identities=23% Similarity=0.293 Sum_probs=86.9
Q ss_pred CCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCcEEec
Q 037679 496 ESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTI 575 (693)
Q Consensus 496 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 575 (693)
++|++|++++|.++ .+| ..+++|++|++++|.+.+ +|. +.. +|+.|++++|.+++.. . .+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp-~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLP-E---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCC-C---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCC-C---cCccccEEeC
Confidence 44555555555544 222 234555555555555543 333 332 5555555555555422 1 3455566666
Q ss_pred ccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcc-------cEE
Q 037679 576 SNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKV-------SSL 648 (693)
Q Consensus 576 s~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-------~~L 648 (693)
++|.++.++. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|
T Consensus 148 s~N~l~~lp~-------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L 212 (571)
T 3cvr_A 148 DNNQLTMLPE-------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFF 212 (571)
T ss_dssp CSSCCSCCCC-------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEE
T ss_pred CCCccCcCCC-------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEE
Confidence 6555554322 24556666666666553 333 33 56666666666665 3333 332 44 666
Q ss_pred eccCccCCCCcchhhcCCCCCCeEEccCCcccCCccCccccc
Q 037679 649 LLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVPSSIFEL 690 (693)
Q Consensus 649 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~ 690 (693)
++++|++. .+|..+..+++|++|++++|++++.+|+.+.++
T Consensus 213 ~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 213 RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred ecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 66666665 455555556666666666666666555555443
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=2.3e-16 Score=174.48 Aligned_cols=178 Identities=22% Similarity=0.294 Sum_probs=154.3
Q ss_pred CCCCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCC
Q 037679 2 NLNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLT 81 (693)
Q Consensus 2 ~~~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~ 81 (693)
++++|+.|++++|.+..+ + .|..+++|+.|+|++|.++++.+ +.++++|+.|+|++|++.+.. . +..+++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~--l~~l~~L~ 112 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--S--LKDLKKLK 112 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--T--STTCTTCC
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--h--hccCCCCC
Confidence 367899999999999854 3 59999999999999999997655 999999999999999998643 3 78999999
Q ss_pred EEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCC
Q 037679 82 ALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKL 161 (693)
Q Consensus 82 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 161 (693)
+|+|++|.+.... .+. .+++|+.|++++|+++.+ ..++.+++|++|++++|.++.+.. ...+++|+.|++++|.+
T Consensus 113 ~L~Ls~N~l~~l~--~l~-~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 113 SLSLEHNGISDIN--GLV-HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EEECTTSCCCCCG--GGG-GCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCCCCc--ccc-CCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC
Confidence 9999999998753 455 999999999999999988 569999999999999999998544 66899999999999999
Q ss_pred CCCCCCCCCCCCCEEeCCCCCCCCCcccccc
Q 037679 162 QGPLPVPSLNGLQALDLSYNNLSGMLPECLG 192 (693)
Q Consensus 162 ~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~ 192 (693)
.+...+..+++|+.|+|++|.+.......+.
T Consensus 188 ~~l~~l~~l~~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 188 SDLRALAGLKNLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp CBCGGGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred CCChHHccCCCCCEEEccCCcCcCCcccccc
Confidence 9876677999999999999998765433333
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=6.5e-16 Score=149.95 Aligned_cols=132 Identities=26% Similarity=0.302 Sum_probs=109.6
Q ss_pred ccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 6 l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
-+.++++++.++ .+|..+. ++|++|++++|.++++.+.+|.++++|++|++++|++....+.. |..+++|++|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~--~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV--FDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEEC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh--cccCCCcCEEEC
Confidence 357888888887 4555443 88999999999999888888999999999999999987665555 788999999999
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDL 143 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 143 (693)
++|.++...+..|. .+++|+.|++++|+++.+|..+..+++|++|++++|.++.++.
T Consensus 96 s~N~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 96 GTNQLTVLPSAVFD-RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp CSSCCCCCCTTTTT-TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred CCCcCCccChhHhC-cchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH
Confidence 99998877776676 8899999999999999888888888999999998888887543
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=6.3e-17 Score=160.57 Aligned_cols=165 Identities=20% Similarity=0.237 Sum_probs=88.4
Q ss_pred ccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 6 l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
++.++++.+.++++. .+..+++|++|++++|.++++ + ++.++++|++|++++|++.+..+ +..+++|++|++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~----l~~l~~L~~L~L 92 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP----LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG----GTTCSSCCEEEC
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh----hccCCCCCEEEC
Confidence 344455555555332 455566666666666666533 2 56666666666666666654433 456666666666
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPL 165 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 165 (693)
++|.++.... +. . ++|+.|++++|+++.++ .++.+++|++|++++|.+++++ ....+++|+.|++++|.+.+..
T Consensus 93 ~~N~l~~l~~--~~-~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~ 166 (263)
T 1xeu_A 93 NRNRLKNLNG--IP-S-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTG 166 (263)
T ss_dssp CSSCCSCCTT--CC-C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCT
T ss_pred CCCccCCcCc--cc-c-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchH
Confidence 6666654332 11 2 56666666666666554 3556666666666666665532 2234455555555555544443
Q ss_pred CCCCCCCCCEEeCCCCCCC
Q 037679 166 PVPSLNGLQALDLSYNNLS 184 (693)
Q Consensus 166 ~~~~l~~L~~L~L~~~~i~ 184 (693)
.+..+++|+.|++++|.+.
T Consensus 167 ~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCccc
Confidence 3334444444444444443
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=9.4e-16 Score=167.64 Aligned_cols=177 Identities=20% Similarity=0.227 Sum_probs=99.1
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEE
Q 037679 29 QLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVI 108 (693)
Q Consensus 29 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 108 (693)
+|++|++++|.+++ +|..+ .++|++|++++|.+. .+| ..+++|++|++++|.++.... +. + +|+.|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-----~~l~~L~~L~Ls~N~l~~ip~--l~-~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-----ELPASLEYLDACDNRLSTLPE--LP-A--SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-----CCCTTCCEEECCSSCCSCCCC--CC-T--TCCEE
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-----cccCCCCEEEccCCCCCCcch--hh-c--CCCEE
Confidence 56666666666654 33333 255666666666655 233 224566666666666655322 33 2 66666
Q ss_pred eccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCcc
Q 037679 109 GFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNLSGMLP 188 (693)
Q Consensus 109 ~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i~~~~~ 188 (693)
++++|+++.+|. .+++|++|++++|.++.++. .+++|++|++++|.+++.-. -.++|+.|++++|.|+. +|
T Consensus 126 ~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~~~L~~L~Ls~N~L~~-lp 196 (571)
T 3cvr_A 126 DVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LPESLEALDVSTNLLES-LP 196 (571)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS-CC
T ss_pred ECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hhCCCCEEECcCCCCCc-hh
Confidence 666666666555 45666666666666665333 45566666666666664222 11666666666666663 33
Q ss_pred cccccccccc-------cEEEcccccccccccccccCCCCccEEEccCCcCC
Q 037679 189 ECLGNFSVEL-------SALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQ 233 (693)
Q Consensus 189 ~~~~~~~~~L-------~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~ 233 (693)
. +.. +| +.|++++|.++.++. .+..+++|+.|++++|+++
T Consensus 197 ~-~~~---~L~~~~~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 197 A-VPV---RNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp C-CC-----------CCEEEECCSSCCCCCCG-GGGGSCTTEEEECCSSSCC
T ss_pred h-HHH---hhhcccccceEEecCCCcceecCH-HHhcCCCCCEEEeeCCcCC
Confidence 3 322 34 667777776665433 3444667777777776665
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=8.9e-16 Score=147.90 Aligned_cols=149 Identities=23% Similarity=0.344 Sum_probs=109.1
Q ss_pred cEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECC
Q 037679 7 STLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLS 86 (693)
Q Consensus 7 ~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~ 86 (693)
+.++++++.++ .+|..+. ++|++|++++|.++++.+.+|.++++|++|++++|++.+..+.. |.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~--~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA--FQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT--TTTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH--hhCCcCCCEEECC
Confidence 56788888887 4455553 68888888888888777778888888888888888888776666 8888888888888
Q ss_pred CCcCCchhhhhhhcCCCCCcEEeccCCCCCch-hhhhhcCCCccEEEcCCCCCCCCCCCcc-CCCCCcEEeCCCCCC
Q 037679 87 SNKLSLLTRATLNTNLPNFTVIGFNSCNLSEF-PYFLHNQDELVSLDLSSNKIAGQDLLVL-PWSKMNTLDLGFNKL 161 (693)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~n~~ 161 (693)
+|.++...+..|. ++++|+.|++++|+++.+ +..++.+++|++|++++|.++.++...+ .+++|+.|++++|.+
T Consensus 89 ~N~l~~l~~~~f~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 89 GNKITELPKSLFE-GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCcCCccCHhHcc-CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 8888876666665 788888888888888866 3467778888888888887776544332 344444444444433
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=5.5e-16 Score=146.75 Aligned_cols=151 Identities=20% Similarity=0.228 Sum_probs=96.4
Q ss_pred CCCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCE
Q 037679 3 LNKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTA 82 (693)
Q Consensus 3 ~~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~ 82 (693)
+++|++|++++|.++ .++ .+..+++|++|++++|.+.. +..+.++++|++|++++|++.+..+.. +..+++|++
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~ 116 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPN--LSGLTSLTL 116 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCC--CTTCTTCCE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChh--hcCCCCCCE
Confidence 456677777777666 333 46667777777777775542 236666777777777777666544444 666777777
Q ss_pred EECCCCcCCchhhhhhhcCCCCCcEEeccCCC-CCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCC
Q 037679 83 LVLSSNKLSLLTRATLNTNLPNFTVIGFNSCN-LSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKL 161 (693)
Q Consensus 83 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 161 (693)
|++++|.++...+..+. .+++|++|++++|. ++.++ .++.+++|++|++++|.++++. ....+++|+.|++++|.+
T Consensus 117 L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 77777777665555565 67777777777776 66665 4667777777777777766633 444666777777777765
Q ss_pred C
Q 037679 162 Q 162 (693)
Q Consensus 162 ~ 162 (693)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 5
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=1.7e-15 Score=145.86 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=93.7
Q ss_pred cEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCcEEecccC
Q 037679 499 SYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNS 578 (693)
Q Consensus 499 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n 578 (693)
+.++.++++++. +|..+ .+++++|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 456666666553 33322 256777777777765555556666777777777777766666666666777777777777
Q ss_pred CCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCC
Q 037679 579 NFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLS 656 (693)
Q Consensus 579 ~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 656 (693)
.+...++.. +..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~---f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSL---FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTT---TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhH---ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666544322 245566666666666666555555666666666666666666555555555666666666666654
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.64 E-value=1.8e-15 Score=145.79 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=76.0
Q ss_pred cEEeccCCcccccccccccccCCCcEEEeeCCcCCCCcc-ccccCCccccEEEecCccccccchhccCCCCCCcEEeccc
Q 037679 499 SYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELP-TSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISN 577 (693)
Q Consensus 499 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~ 577 (693)
+.++++++.++. +|..+ .+.+++|++++|.+.+..+ ..|..+++|+.|++++|.+....+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 356666655442 23222 2334566666666544422 2345555666666666555555444555555555555555
Q ss_pred CCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCC
Q 037679 578 SNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLS 656 (693)
Q Consensus 578 n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 656 (693)
|.+....+.. +..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKM---FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGG---GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhH---hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5554443321 234445555555555554444444445555555555555554444444444555555555555544
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=9.2e-16 Score=159.96 Aligned_cols=128 Identities=24% Similarity=0.276 Sum_probs=78.8
Q ss_pred cEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCcccc-CCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 7 STLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIF-ELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 7 ~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
++++++++.++ .+|..+. +.+++|++++|.++++.+..|. ++++|++|+|++|++....+.. |.++++|++|+|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~--~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--FVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh--ccCCCCCCEEEC
Confidence 45666666666 3444442 4466677777776666666665 6677777777777666555544 666666677776
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCch-hhhhhcCCCccEEEcCCCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEF-PYFLHNQDELVSLDLSSNKIAG 140 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~~~~ 140 (693)
++|.++...+..|. .+++|+.|++++|+++.+ +..++.+++|++|++++|.++.
T Consensus 96 s~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 96 SSNHLHTLDEFLFS-DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp CSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCCcCCcCCHHHhC-CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 66666655555555 666666666666666644 3355566666666666665554
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=3e-16 Score=155.65 Aligned_cols=168 Identities=23% Similarity=0.278 Sum_probs=83.7
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCc
Q 037679 27 LTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFT 106 (693)
Q Consensus 27 ~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 106 (693)
+.++..++++++.++++. .+.++++|++|++++|.+.... . +..+++|++|++++|.++...+ +. .+++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~--l~~l~~L~~L~L~~N~i~~~~~--l~-~l~~L~ 88 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--G--MQFFTNLKELHLSHNQISDLSP--LK-DLTKLE 88 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--T--GGGCTTCCEEECCSSCCCCCGG--GT-TCSSCC
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--H--HhhCCCCCEEECCCCccCCChh--hc-cCCCCC
Confidence 344555555555555332 4555556666666655554332 2 4555555555555555554433 33 455555
Q ss_pred EEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCCCCC
Q 037679 107 VIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNLSGM 186 (693)
Q Consensus 107 ~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i~~~ 186 (693)
.|++++|+++.++.... ++|++|++++|.++. ...+..+++|++|++++|.+++.
T Consensus 89 ~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~-----------------------~~~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 89 ELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRD-----------------------TDSLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp EEECCSSCCSCCTTCCC--SSCCEEECCSSCCSB-----------------------SGGGTTCTTCCEEECTTSCCCBC
T ss_pred EEECCCCccCCcCcccc--CcccEEEccCCccCC-----------------------ChhhcCcccccEEECCCCcCCCC
Confidence 55555555544433211 444444444444443 22333455555555555555543
Q ss_pred cccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCC
Q 037679 187 LPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQ 233 (693)
Q Consensus 187 ~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~ 233 (693)
..+..++ +|+.|++++|.+.+. ..+..+++|+.|++++|+++
T Consensus 144 --~~l~~l~-~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 144 --VMLGFLS-KLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp --GGGGGCT-TCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred --hHHccCC-CCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 2355555 555555555555544 34555555555555555543
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=4.2e-15 Score=144.19 Aligned_cols=137 Identities=20% Similarity=0.237 Sum_probs=68.9
Q ss_pred ccccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCE
Q 037679 544 ASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTA 623 (693)
Q Consensus 544 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 623 (693)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+...++.. +..+++|+.|++++|.++...+..+..+++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV---FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh---cccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence 44444444444444444444444444444444444443332221 234445555555555554444444455555555
Q ss_pred EEccCCccCCCccccccCcCcccEEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCcc
Q 037679 624 LDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 624 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 684 (693)
|++++|.+. .+|..+..+++|+.|++++|++....+..+..+++|++|++++|++.+..+
T Consensus 117 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 117 LFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp EECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred EeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 555555555 445555555556666666665554344445555566666666666554443
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=3.1e-15 Score=144.09 Aligned_cols=148 Identities=18% Similarity=0.222 Sum_probs=100.0
Q ss_pred cEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCC-ccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 7 STLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVP-SSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 7 ~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
++++++++.++. +|..+ .+.+++|++++|.+++..+ ..|.++++|++|++++|++.+..+.. |.++++|++|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~--~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA--FEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEEC
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH--hCCCCCCCEEEC
Confidence 577888887774 45544 3456788888888776643 45778888888888888877666555 777888888888
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCch-hhhhhcCCCccEEEcCCCCCCCCCCCcc-CCCCCcEEeCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEF-PYFLHNQDELVSLDLSSNKIAGQDLLVL-PWSKMNTLDLGFNK 160 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~n~ 160 (693)
++|.++...+..|. .+++|+.|++++|+++.+ |..+..+++|++|++++|.++.+....+ .+++|+.|++++|.
T Consensus 89 s~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 89 TSNRLENVQHKMFK-GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CSSCCCCCCGGGGT-TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCccCccCHhHhc-CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 88877777666666 777777777777777765 4566777777777777777776433222 33444444444433
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=2.1e-15 Score=157.30 Aligned_cols=176 Identities=23% Similarity=0.215 Sum_probs=92.5
Q ss_pred CeeEecccccCCCchhhhhcCCCCcEEeccCCccccccccccc-ccCCCcEEEeeCCcCCCCccccccCCccccEEEecC
Q 037679 475 EDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLF-NLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISS 553 (693)
Q Consensus 475 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 553 (693)
+.++++++.+.. .|..+. ..++.|++++|.++...+..+. .+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456776666663 333222 3466677777666655555555 666666666666666555555566666666666666
Q ss_pred ccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccc---cCCCCCCEEEccCCc
Q 037679 554 FNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGI---SNLTQLTALDLSYNQ 630 (693)
Q Consensus 554 ~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l---~~l~~L~~L~l~~n~ 630 (693)
|++....+..|..+++|+.|++++|.+....+.. +..+++|++|++++|.++...+..+ ..+++|+.|++++|.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~---~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA---FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT---TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHH---hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 6665555555555666666666666555443221 2344555555555555543222222 334555555555555
Q ss_pred cCCCccccccCcCc--ccEEeccCccCC
Q 037679 631 LTGPIPYSLMKLKK--VSSLLLGFNQLS 656 (693)
Q Consensus 631 l~~~~~~~l~~l~~--L~~L~l~~n~~~ 656 (693)
++...+..+..++. ++.|++++|++.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCcc
Confidence 54333333443433 244555555444
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3.9e-15 Score=137.00 Aligned_cols=135 Identities=23% Similarity=0.291 Sum_probs=103.6
Q ss_pred CCCccEEEccccccc-CccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCC
Q 037679 3 LNKLSTLYLQHNQLT-GHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLT 81 (693)
Q Consensus 3 ~~~l~~L~ls~~~l~-~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~ 81 (693)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..|.++++|++|++++|++.+..+.. +.++++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML--AEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHH--HHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHH--HhhCCCCC
Confidence 466888888888887 56677778888888888888888755 67888888888888888887766654 67788888
Q ss_pred EEECCCCcCCchhh-hhhhcCCCCCcEEeccCCCCCchhh----hhhcCCCccEEEcCCCCCCCCC
Q 037679 82 ALVLSSNKLSLLTR-ATLNTNLPNFTVIGFNSCNLSEFPY----FLHNQDELVSLDLSSNKIAGQD 142 (693)
Q Consensus 82 ~L~L~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~----~l~~l~~L~~L~L~~~~~~~~~ 142 (693)
+|++++|.++.... ..+. .+++|++|++++|.++.++. .++.+++|++|++++|.+..++
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EEECBSSSCCSSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EEeccCCccCcchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 88888888876543 4555 78888888888888887765 6778888888888888776643
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=2.1e-17 Score=181.68 Aligned_cols=197 Identities=20% Similarity=0.110 Sum_probs=117.4
Q ss_pred ccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCc-------------CCCcccHHHHhhcCCCCCEEE-CCCCcC
Q 037679 25 RKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNN-------------LSGTVDLNMLLLNLKSLTALV-LSSNKL 90 (693)
Q Consensus 25 ~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-------------~~~~~~~~~~l~~l~~L~~L~-L~~~~~ 90 (693)
..+++|+.|++++|.++ .+|..+.++++|+.|++++|. ..+..+.. +..+++|+.|+ ++.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~--l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET--LQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH--HHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH--HHHHHhcccCcchhhccc
Confidence 44566666677766665 456666666667666665543 22233333 56666666666 454433
Q ss_pred Cchhhhh-----hhc-CCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCC
Q 037679 91 SLLTRAT-----LNT-NLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGP 164 (693)
Q Consensus 91 ~~~~~~~-----~~~-~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 164 (693)
....... +.. ....|+.|++++|+++.+|. ++.+++|++|++++|.++.++.....+++|+.|++++|.+++.
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC
Confidence 2221110 000 11346677777777776665 6777777777777777776544445666666666666666653
Q ss_pred CCCCCCCCCCEEeCCCCCCCCCc-ccccccccccccEEEccccccccccccc---ccCCCCccEEE
Q 037679 165 LPVPSLNGLQALDLSYNNLSGML-PECLGNFSVELSALKLQANNFYRIVPQT---FMNGTNLMMID 226 (693)
Q Consensus 165 ~~~~~l~~L~~L~L~~~~i~~~~-~~~~~~~~~~L~~L~L~~~~i~~~~~~~---~~~~~~L~~L~ 226 (693)
-.+..+++|+.|++++|.+++.. |..+..++ +|+.|+|++|.+...++.. +..+++|+.|+
T Consensus 502 p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 502 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCT-TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred cccCCCCCCcEEECCCCCCCCCCCcHHHhcCC-CCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 33446677777777777777665 67777777 7777777777776665422 22356666665
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=1e-14 Score=131.23 Aligned_cols=128 Identities=22% Similarity=0.323 Sum_probs=99.0
Q ss_pred CCCccEEEccccccc-CccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCC
Q 037679 3 LNKLSTLYLQHNQLT-GHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLT 81 (693)
Q Consensus 3 ~~~l~~L~ls~~~l~-~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~ 81 (693)
.+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..|.++++|++|++++|++.+..+.. +.++++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVL--AEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHH--HHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHH--hhhCCCCC
Confidence 466888888888887 66777778888888888888888755 67888888888888888887766544 67788888
Q ss_pred EEECCCCcCCchh-hhhhhcCCCCCcEEeccCCCCCchhh----hhhcCCCccEEEcCC
Q 037679 82 ALVLSSNKLSLLT-RATLNTNLPNFTVIGFNSCNLSEFPY----FLHNQDELVSLDLSS 135 (693)
Q Consensus 82 ~L~L~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~----~l~~l~~L~~L~L~~ 135 (693)
+|++++|.++... +..+. .+++|++|++++|.++.++. .++.+++|++|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888887653 34555 78888888888888876665 677888888887753
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=8.1e-15 Score=150.81 Aligned_cols=100 Identities=17% Similarity=0.140 Sum_probs=64.3
Q ss_pred CCCCcEEeCCCCCCCC--CCCCCCCCCCCEEeCCCCCCCCCccccccccccccc-EEEcccccccccccccccCCCCccE
Q 037679 148 WSKMNTLDLGFNKLQG--PLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELS-ALKLQANNFYRIVPQTFMNGTNLMM 224 (693)
Q Consensus 148 ~~~L~~L~l~~n~~~~--~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~-~L~L~~~~i~~~~~~~~~~~~~L~~ 224 (693)
+++|+.+++++|.++. ...+..+.+|+++++..| +..+...+|.++. +|+ .+.+.+ .++.+.+.+|..+++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~-~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG-RLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh-hccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 5566666666665552 223446667777777766 6656666777777 777 777766 666677777777777777
Q ss_pred EEccCCcCCCceeeecccccCCCCCCCccCCCCCCceEEe
Q 037679 225 IDFSNNSLQGRALILKFNNFHGEIEEPQTGFEFPKLRIID 264 (693)
Q Consensus 225 L~l~~n~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 264 (693)
+++++|+++ .....+|.++++|+.++
T Consensus 302 l~l~~n~i~--------------~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKIT--------------TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCC--------------EECTTTTCTTCCCCEEE
T ss_pred EEeCCCccC--------------ccchhhhcCCcchhhhc
Confidence 777766664 22344556677777665
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=1.2e-14 Score=149.52 Aligned_cols=192 Identities=11% Similarity=0.059 Sum_probs=129.5
Q ss_pred CCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccc----cccchhccCCCCCC
Q 037679 495 LESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNF----SSTLQASLGNLTQL 570 (693)
Q Consensus 495 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~~l~~l~~L 570 (693)
+++|+.+++.+ .++.+...+|.++++|++++++.|.+....+..|..+.++..+....... .......|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 67777777776 55656666677777777777777766555556666666666555543211 11112223333333
Q ss_pred c--------------------------EEecccCCCCccccchhHhh-hcCCCCcEEEccCCCCCCcccccccCCCCCCE
Q 037679 571 D--------------------------SLTISNSNFSRLMSSSLSWL-TNLNQLTSLNFPYCNLNNEIPFGISNLTQLTA 623 (693)
Q Consensus 571 ~--------------------------~L~ls~n~l~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 623 (693)
+ .+.+.++ +... ....+ ..+++|+++++++|.++.....+|.+|++|++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~---~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNA---DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHH---HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHH---HHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 3 2222221 1100 11111 13789999999999998777788999999999
Q ss_pred EEccCCccCCCccccccCcCccc-EEeccCccCCCCcchhhcCCCCCCeEEccCCcccCCccCccccccCC
Q 037679 624 LDLSYNQLTGPIPYSLMKLKKVS-SLLLGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVPSSIFELRNL 693 (693)
Q Consensus 624 L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~l 693 (693)
|++.+| +..+.+..|.+|++|+ .+.+++ ++....+..|..+++|+.+++++|.+...-+..|.+|.+|
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 999988 7656778899999999 999998 7776677899999999999999999984444678777665
No 122
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.51 E-value=5.5e-13 Score=140.71 Aligned_cols=160 Identities=13% Similarity=0.123 Sum_probs=86.9
Q ss_pred cCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCch
Q 037679 39 QLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEF 118 (693)
Q Consensus 39 ~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 118 (693)
.++.+...+|.+|.+|+.+.+..+ ++.....+ |.++.+|+.+++..+ ++.+...+|. ++++|+.+.+..+ ++.+
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~a--F~~c~~L~~i~lp~~-l~~I~~~aF~-~c~~L~~i~~p~~-l~~i 131 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFA--FENCSKLEIINIPDS-VKMIGRCTFS-GCYALKSILLPLM-LKSI 131 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTT--TTTCTTCCEECCCTT-CCEECTTTTT-TCTTCCCCCCCTT-CCEE
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhH--hhCCCCCcEEEeCCC-ceEccchhhc-ccccchhhcccCc-eeee
Confidence 355566677777777777777543 44444444 777777777777654 5555555555 6666666555433 2221
Q ss_pred h-hhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCccccccccccc
Q 037679 119 P-YFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVE 197 (693)
Q Consensus 119 ~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~ 197 (693)
. .++.++..++.... ......+...+..+.+|+.+.+..+ +..+...+|..+. +
T Consensus 132 ~~~aF~~~~~~~~~~~-----------------------~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~-~ 186 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIP-----------------------EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCG-K 186 (394)
T ss_dssp CTTTTTTCCCSEEECC-----------------------TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-T
T ss_pred cceeeecccccccccC-----------------------ccccccchhhhcccCCCcEEecCCc-cceeccccccCCC-C
Confidence 1 12333322222111 1111112233445556666666543 2334455566666 6
Q ss_pred ccEEEcccccccccccccccCCCCccEEEccCC
Q 037679 198 LSALKLQANNFYRIVPQTFMNGTNLMMIDFSNN 230 (693)
Q Consensus 198 L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n 230 (693)
|+.+.+..+ +..+...+|..+..|+.+.+..+
T Consensus 187 L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 187 LKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp CCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 776666554 55566666777777777666554
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=5.8e-16 Score=170.26 Aligned_cols=190 Identities=19% Similarity=0.183 Sum_probs=124.0
Q ss_pred cccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccE
Q 037679 469 QKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKA 548 (693)
Q Consensus 469 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 548 (693)
..++.|+.|++++|.+. ..|..++.+++|+.|++++|......+.... .+...+..|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~-----------~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR-----------ALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------HHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHH-----------hcccccCCHHHHHHHHhccc
Confidence 34555666677666665 4566666666777776655431111110000 00112233334444445554
Q ss_pred EE--------------ecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCccccc
Q 037679 549 LE--------------ISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFG 614 (693)
Q Consensus 549 L~--------------l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 614 (693)
|+ +++|.+..... ..|+.|++++|.++.++. +..+++|+.|++++|.++ .+|..
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp~-----~~~l~~L~~L~Ls~N~l~-~lp~~ 481 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLCH-----LEQLLLVTHLDLSHNRLR-ALPPA 481 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCCC-----GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred CcchhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCCCCcC-----ccccccCcEeecCccccc-ccchh
Confidence 44 33333322211 248888888888876432 567788889999988888 67778
Q ss_pred ccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCCCCc-chhhcCCCCCCeEEccCCcccCCcc
Q 037679 615 ISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSGRI-PVEISNLTQLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 615 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p 684 (693)
+..+++|+.|++++|.+++ +| .+.++++|+.|++++|++.+.. |..+..+++|++|++++|++.+..|
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 482 LAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred hhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 8888999999999988884 56 7888889999999999888665 8888889999999999998884433
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=5.6e-14 Score=129.19 Aligned_cols=138 Identities=22% Similarity=0.204 Sum_probs=76.6
Q ss_pred cCCCcEEEeeCCcCC-CCccccccCCccccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCC
Q 037679 519 LTKLEHLYLSGNRFL-DELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQL 597 (693)
Q Consensus 519 l~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L 597 (693)
.++|++|++++|.+. +..|..+..+++|+.|++++|.+... ..+..+++|++|++++|.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~------------------ 82 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENR------------------ 82 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCC------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCc------------------
Confidence 355666666666654 34454455566666666666655443 344445555555555554
Q ss_pred cEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCc-cccccCcCcccEEeccCccCCCCcc---hhhcCCCCCCeEE
Q 037679 598 TSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPI-PYSLMKLKKVSSLLLGFNQLSGRIP---VEISNLTQLQSLQ 673 (693)
Q Consensus 598 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~ 673 (693)
+++.+|..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|++.+..+ ..+..+++|++|+
T Consensus 83 ---------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 83 ---------IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp ---------CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred ---------CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 44334444444556666666666555322 1455556666666666666654333 3566666666666
Q ss_pred ccCCcccCCccCc
Q 037679 674 LSSNQLEGSVPSS 686 (693)
Q Consensus 674 l~~n~~~~~~p~~ 686 (693)
+++|++. .+|+.
T Consensus 154 l~~n~~~-~~~~~ 165 (168)
T 2ell_A 154 GYDREDQ-EAPDS 165 (168)
T ss_dssp TEETTSC-BCCSS
T ss_pred CCCCChh-hcccc
Confidence 6666665 55543
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=1.3e-13 Score=129.54 Aligned_cols=128 Identities=22% Similarity=0.275 Sum_probs=107.9
Q ss_pred cEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCc-cccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 7 STLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPS-SIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 7 ~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
++++++++.++ .+|..+. .+|++|++++|.++++.+. .|.++++|++|++++|++.+..+.. |.++++|++|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA--FEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT--TTTCTTCCEEEC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH--cCCcccCCEEEC
Confidence 78999999987 5566554 3899999999999877664 5899999999999999998887766 889999999999
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCch-hhhhhcCCCccEEEcCCCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEF-PYFLHNQDELVSLDLSSNKIAG 140 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~~~~ 140 (693)
++|.++...+..|. ++++|++|++++|+++.+ |..++.+++|++|++++|.++.
T Consensus 86 s~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 86 GENKIKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSCCCCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCcCCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99999888877777 889999999999998855 5678888888888888888876
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=6.1e-13 Score=139.72 Aligned_cols=255 Identities=12% Similarity=0.119 Sum_probs=192.4
Q ss_pred CCccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEE
Q 037679 4 NKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTAL 83 (693)
Q Consensus 4 ~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L 83 (693)
+.++.+.+..+ ++.+...+|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+......+ |.+|++|+.+
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~a--F~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDI--FYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSST--TTTCTTCCEE
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHH--hhCcccCCee
Confidence 45666676643 666778889886 7999998776 776788889996 699999976 565555556 8899999999
Q ss_pred ECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCC
Q 037679 84 VLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQ 162 (693)
Q Consensus 84 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 162 (693)
++++|.++......|. +.+|+.+.+.++ ++.++. +|.++++|+.+++..+ ++.++...|...+|+.+.+.. .++
T Consensus 186 ~l~~n~l~~I~~~aF~--~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~-~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV--YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPN-GVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT--TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEET-TCC
T ss_pred ecCCCcceEechhhEe--ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCC-Ccc
Confidence 9999888888877775 589999999754 666643 7889999999999875 666677777558899998844 343
Q ss_pred --CCCCCCCCCCCCEEeCCCCCCC-----CCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCc
Q 037679 163 --GPLPVPSLNGLQALDLSYNNLS-----GMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGR 235 (693)
Q Consensus 163 --~~~~~~~l~~L~~L~L~~~~i~-----~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~ 235 (693)
+...+..+++|+.+++.++.+. .+...+|.++. +|+.+.+. +.+..+...+|..+.+|+.+++..+ ++
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~-~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~-- 335 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP-KLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT-- 335 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT-TCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC--
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc-cCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc--
Confidence 2445668899999999887665 46678888999 89999998 4588888889999999999999655 32
Q ss_pred eeeecccccCCCCCCCccCCCCCCceEEecCCCcccCCCCCcccccch-hhhhhh
Q 037679 236 ALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFTGNLPSKHFHCWN-AMKDIN 289 (693)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~l~~l~ 289 (693)
.....+|.++ +|+.+++.++... .++...|..++ .++.+.
T Consensus 336 ------------~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~ 376 (401)
T 4fdw_A 336 ------------QINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIR 376 (401)
T ss_dssp ------------EECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEE
T ss_pred ------------EEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEE
Confidence 2234466778 8999999998776 55555566553 343443
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=1.7e-13 Score=128.75 Aligned_cols=129 Identities=19% Similarity=0.262 Sum_probs=85.0
Q ss_pred cEEEeeCCcCCCCccccccCCccccEEEecCccccccchh-ccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEE
Q 037679 523 EHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQA-SLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLN 601 (693)
Q Consensus 523 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~ 601 (693)
+.++++++.+ ..+|..+. +++++|++++|.+....+. .+..+++|++|++++|.+....+.. +..+++|++|+
T Consensus 11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA---FEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT---TTTCTTCCEEE
T ss_pred CEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH---cCCcccCCEEE
Confidence 6777888776 44454332 3777777777777665443 3667777777777777776554432 34566677777
Q ss_pred ccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCCC
Q 037679 602 FPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLSG 657 (693)
Q Consensus 602 l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 657 (693)
+++|++++..+..+.++++|++|++++|.+++..|..+..+++|+.|++++|++.+
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 77777766555566667777777777777766666666666777777777777663
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=1.2e-13 Score=124.11 Aligned_cols=127 Identities=21% Similarity=0.243 Sum_probs=107.5
Q ss_pred cCCCCcEEEccCCcCC-CCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCC
Q 037679 26 KLTQLQIVRLAENQLE-GSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPN 104 (693)
Q Consensus 26 ~~~~L~~L~ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~ 104 (693)
..++|++|++++|.++ +..|..+..+++|++|++++|.+.+. .. +..+++|++|++++|.++...+..+. .+++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~--~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~ 89 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--AN--LPKLNKLKKLELSDNRVSGGLEVLAE-KCPN 89 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TT--CCCCTTCCEEECCSSCCCSCTHHHHH-HCTT
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hh--hhcCCCCCEEECCCCcccchHHHHhh-hCCC
Confidence 3588999999999998 56788899999999999999999876 33 78999999999999999886666665 7999
Q ss_pred CcEEeccCCCCCchh--hhhhcCCCccEEEcCCCCCCCCCC----CccCCCCCcEEeCC
Q 037679 105 FTVIGFNSCNLSEFP--YFLHNQDELVSLDLSSNKIAGQDL----LVLPWSKMNTLDLG 157 (693)
Q Consensus 105 L~~L~l~~~~l~~~~--~~l~~l~~L~~L~L~~~~~~~~~~----~~~~~~~L~~L~l~ 157 (693)
|++|++++|+++.++ ..++.+++|++|++++|.++..+. ....+++|+.|+++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999999999875 789999999999999999987544 12367777777664
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=3.1e-13 Score=127.02 Aligned_cols=127 Identities=23% Similarity=0.374 Sum_probs=101.2
Q ss_pred cEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECC
Q 037679 7 STLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLS 86 (693)
Q Consensus 7 ~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~ 86 (693)
++++++++.++ .+|..+ .++|++|++++|.++ .+|.+|.++++|++|++++|++.+..+.. |.++++|++|+++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~--f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQS--FSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhH--ccCCCCCCEEECC
Confidence 57888888887 445544 368888899888888 55678888888888888888888777666 8888888888888
Q ss_pred CCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCCCCCCC
Q 037679 87 SNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSSNKIAG 140 (693)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~~~~ 140 (693)
+|.++...+..|. .+++|+.|++++|+++.++. .+..+++|++|++++|.+..
T Consensus 87 ~N~l~~i~~~~f~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 87 YNRLRCIPPRTFD-GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SSCCCBCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCEeCHHHhC-CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8888887777777 88888888888888887765 47778888888888877765
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.7e-13 Score=126.99 Aligned_cols=129 Identities=19% Similarity=0.202 Sum_probs=69.4
Q ss_pred CCCccEEEcccccccCccchhhccCC-CCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCC
Q 037679 3 LNKLSTLYLQHNQLTGHIPVEIRKLT-QLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLT 81 (693)
Q Consensus 3 ~~~l~~L~ls~~~l~~~~~~~~~~~~-~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~ 81 (693)
+++|++|++++|.++.+ +. +..+. +|++|++++|.+++. ..|.++++|++|++++|++.+..+.. +..+++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGL--DQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCH--HHHCTTCC
T ss_pred cCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcch--hhcCCCCC
Confidence 44556666666665533 32 33332 566666666665543 45555666666666666655443322 45556666
Q ss_pred EEECCCCcCCchhh-hhhhcCCCCCcEEeccCCCCCchhhh----hhcCCCccEEEcCCCCC
Q 037679 82 ALVLSSNKLSLLTR-ATLNTNLPNFTVIGFNSCNLSEFPYF----LHNQDELVSLDLSSNKI 138 (693)
Q Consensus 82 ~L~L~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~----l~~l~~L~~L~L~~~~~ 138 (693)
+|++++|.+..... ..+. .+++|+.|++++|.++.+|.. ++.+++|++|++++|.+
T Consensus 92 ~L~L~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCCCGGGGGGGG-GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCCcchhhHhhh-cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 66666665544332 1333 556666666666655555543 55556666666555544
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.45 E-value=2.1e-12 Score=136.25 Aligned_cols=151 Identities=12% Similarity=0.122 Sum_probs=88.6
Q ss_pred hhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchh-hhhhcCCCccEEEcCCCCCCCCCCCccCCCCCc
Q 037679 74 LLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFP-YFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMN 152 (693)
Q Consensus 74 l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~ 152 (693)
|.++.+|+.+.+..+ ++.+...+|. +|++|+.+++.++ ++.++ .++.++.+|+.+.+..+ ++.++
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~~~aF~-~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~---------- 132 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIGEFAFE-NCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIG---------- 132 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEECTTTTT-TCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC----------
T ss_pred hhCCCCceEEEeCCC-ccCcchhHhh-CCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeec----------
Confidence 677777777777643 5555566665 6677777666543 34332 24555555554443322 11111
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcC
Q 037679 153 TLDLGFNKLQGPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSL 232 (693)
Q Consensus 153 ~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l 232 (693)
...+..+.. ....+.. ....+...+|..+. +|+.+.+.++ +..+...+|..+.+|+.+++..+ +
T Consensus 133 -----------~~aF~~~~~-~~~~~~~-~~~~i~~~aF~~c~-~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~ 196 (394)
T 4fs7_A 133 -----------VEAFKGCDF-KEITIPE-GVTVIGDEAFATCE-SLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-L 196 (394)
T ss_dssp -----------TTTTTTCCC-SEEECCT-TCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-C
T ss_pred -----------ceeeecccc-cccccCc-cccccchhhhcccC-CCcEEecCCc-cceeccccccCCCCceEEEcCCC-c
Confidence 112222222 2222222 22334456788999 9999999755 56677889999999999998765 2
Q ss_pred CCceeeecccccCCCCCCCccCCCCCCceEEecCCC
Q 037679 233 QGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHN 268 (693)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 268 (693)
+ .....++.++..|+.+.+..+
T Consensus 197 ~--------------~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 197 K--------------IIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp C--------------EECTTTTTTCTTCCBCCCCTT
T ss_pred e--------------EeCchhhccccccceeecCCC
Confidence 1 223445677888887776654
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=1.6e-14 Score=164.03 Aligned_cols=184 Identities=19% Similarity=0.151 Sum_probs=88.6
Q ss_pred hhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcE
Q 037679 74 LLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNT 153 (693)
Q Consensus 74 l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~ 153 (693)
+..+++|+.|+|++|.+..... .+. .+++|+.|+|++|.++.+|..++++++|++|+|++|.++.++.....+++|++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~-~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISA-NIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCG-GGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCCCCCCCCh-hhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 5556666666666666653332 233 56666666666666666666666666666666666666655444456666666
Q ss_pred EeCCCCCCCCCC-CCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcC
Q 037679 154 LDLGFNKLQGPL-PVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSL 232 (693)
Q Consensus 154 L~l~~n~~~~~~-~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l 232 (693)
|++++|.+...- .+..+++|+.|+|++|.+++..|..+.........+++++|.+....|. .|+.|++++|..
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~ 371 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGE 371 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccc
Confidence 666666665221 2347788888888888888777777766542334467788877665553 455666666511
Q ss_pred CCceeeecccccCCCCCCCccCCCCCCceEEecCCCccc
Q 037679 233 QGRALILKFNNFHGEIEEPQTGFEFPKLRIIDLSHNRFT 271 (693)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (693)
. ......+.+..+. .+..+..+....+++|.+.
T Consensus 372 ~----~~~~~~l~~~~~~--~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 372 P----QREYDSLQQSTEH--LATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------------------CCC
T ss_pred c----ccccCCccccccc--hhhcccccceeeeeccccc
Confidence 0 0001112222222 2245666666777777665
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=1.9e-12 Score=135.96 Aligned_cols=238 Identities=12% Similarity=0.180 Sum_probs=190.8
Q ss_pred CccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEE
Q 037679 5 KLSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALV 84 (693)
Q Consensus 5 ~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~ 84 (693)
+|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..+...+|.+|.+|+.++++.|.+....... |. +.+|+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a--F~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST--FV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT--TT-TCCCSEEE
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh--Ee-ecccCEEE
Confidence 6889998876 777889999985 799999986 677788899999999999999999988666655 66 68999999
Q ss_pred CCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh-hhhcCCCccEEEcCCCCCCCCCCCcc-CCCCCcEEeCCCCCCC
Q 037679 85 LSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY-FLHNQDELVSLDLSSNKIAGQDLLVL-PWSKMNTLDLGFNKLQ 162 (693)
Q Consensus 85 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~ 162 (693)
+..+ +..+...+|. +|++|+.+.+.++ ++.++. +|.+ .+|+.+.+. +.++.++...| ++++|+.+.+.++.+.
T Consensus 210 lp~~-l~~I~~~aF~-~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 210 LPVT-LKEIGSQAFL-KTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp CCTT-CCEECTTTTT-TCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred eCCc-hheehhhHhh-CCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcccc
Confidence 9954 7778888888 9999999999875 565554 5556 789999994 45777666666 8999999999887654
Q ss_pred -------CCCCCCCCCCCCEEeCCCCCCCCCcccccccccccccEEEcccccccccccccccCCCCccEEEccCCcCCCc
Q 037679 163 -------GPLPVPSLNGLQALDLSYNNLSGMLPECLGNFSVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNNSLQGR 235 (693)
Q Consensus 163 -------~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n~l~~~ 235 (693)
+...+..+++|+.+++. +.+..+...+|.++. +|+.+.+..+ ++.+...+|..+ +|+.+++.+|....
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~-~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~- 359 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNR-KVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ- 359 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCC-SCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB-
T ss_pred CCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCC-CccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc-
Confidence 34456689999999999 458878889999999 9999999654 888889999999 99999999987641
Q ss_pred eeeecccccCCCCCCCccCCCCC-CceEEecCCCccc
Q 037679 236 ALILKFNNFHGEIEEPQTGFEFP-KLRIIDLSHNRFT 271 (693)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 271 (693)
....+|..++ .++.|.+..+.+.
T Consensus 360 -------------l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 360 -------------VFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp -------------CCCSSCCCSCTTCCEEEECGGGHH
T ss_pred -------------cccccccCCCCCccEEEeCHHHHH
Confidence 1122345553 5778877766533
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.42 E-value=1.4e-12 Score=120.99 Aligned_cols=129 Identities=22% Similarity=0.268 Sum_probs=97.0
Q ss_pred ccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 6 l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
.+.++++++.++. +|..+ .++|++|++++|.++++.+..|.++++|++|++++|++.+..+.. |..+++|++|++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV--FDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEEC
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH--ccCCCccCEEEC
Confidence 4678888888774 44333 368888888888888777777888888888888888887665544 678888888888
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhh-hhcCCCccEEEcCCCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYF-LHNQDELVSLDLSSNKIAG 140 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-l~~l~~L~~L~L~~~~~~~ 140 (693)
++|.++...+..+. .+++|+.|++++|+++.+|.. ++.+++|++|++++|.+..
T Consensus 84 ~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 84 HENKLQSLPNGVFD-KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccccCHHHhh-CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 88888776666565 778888888888887777654 4677777777777777765
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=6.5e-14 Score=158.92 Aligned_cols=215 Identities=19% Similarity=0.151 Sum_probs=107.5
Q ss_pred CCccEEEcccccccCccchhhccCCCCcEEEc-----cCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCC
Q 037679 4 NKLSTLYLQHNQLTGHIPVEIRKLTQLQIVRL-----AENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLK 78 (693)
Q Consensus 4 ~~l~~L~ls~~~l~~~~~~~~~~~~~L~~L~l-----s~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~ 78 (693)
++++.|+++++.+.. .+..+-....|+.+++ +.|.+. ..++.|.++..|+.|+|++|.+. .++.. +..++
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~--~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISAN--IFKYD 247 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGG--GGGCC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChh--hcCCC
Confidence 457788888888774 3433333333333332 233333 45778899999999999999987 44444 56889
Q ss_pred CCCEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCC
Q 037679 79 SLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGF 158 (693)
Q Consensus 79 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~ 158 (693)
+|++|+|++|.++ ..+..+. ++++|+.|+|++|+++.+|..++.+++|++|+|++|.++.++.....+++|+.|++++
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 9999999999888 4556676 8999999999999999998889999999999999999988776666889999999999
Q ss_pred CCCCCCCCCC--CC-CCCCEEeCCCCCCCCCcccccccccccccEEEcccc--------cccccccccccCCCCccEEEc
Q 037679 159 NKLQGPLPVP--SL-NGLQALDLSYNNLSGMLPECLGNFSVELSALKLQAN--------NFYRIVPQTFMNGTNLMMIDF 227 (693)
Q Consensus 159 n~~~~~~~~~--~l-~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~--------~i~~~~~~~~~~~~~L~~L~l 227 (693)
|.+.+..+.. .+ .....+++++|.+++..|. .++.|++++| .+....+..+..+..++...+
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~l 398 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVL 398 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C--------------------------------------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeecccccccccCCccccccchhhcccccceeee
Confidence 9887543322 01 1112367788888766665 4455555555 223333333444445555555
Q ss_pred cCCcC
Q 037679 228 SNNSL 232 (693)
Q Consensus 228 ~~n~l 232 (693)
++|-+
T Consensus 399 s~Nil 403 (727)
T 4b8c_D 399 SYNTL 403 (727)
T ss_dssp ---CC
T ss_pred ecccc
Confidence 55554
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=4.1e-13 Score=124.38 Aligned_cols=132 Identities=16% Similarity=0.201 Sum_probs=98.1
Q ss_pred hhhccCCCCcEEEccCCcCCCCCCccccCCC-CCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhc
Q 037679 22 VEIRKLTQLQIVRLAENQLEGSVPSSIFELR-NLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNT 100 (693)
Q Consensus 22 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 100 (693)
..+..+.+|++|++++|.++.+ +. +..+. +|++|++++|.+.+. .. +..+++|++|++++|.++...+..+.
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~--l~~l~~L~~L~Ls~N~l~~~~~~~~~- 85 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DG--FPLLRRLKTLLVNNNRICRIGEGLDQ- 85 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CC--CCCCSSCCEEECCSSCCCEECSCHHH-
T ss_pred HhcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cc--cccCCCCCEEECCCCcccccCcchhh-
Confidence 3467788999999999988854 43 45544 899999999988865 23 78889999999999988876655555
Q ss_pred CCCCCcEEeccCCCCCchhh--hhhcCCCccEEEcCCCCCCCCCCC----ccCCCCCcEEeCCCCC
Q 037679 101 NLPNFTVIGFNSCNLSEFPY--FLHNQDELVSLDLSSNKIAGQDLL----VLPWSKMNTLDLGFNK 160 (693)
Q Consensus 101 ~l~~L~~L~l~~~~l~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~----~~~~~~L~~L~l~~n~ 160 (693)
.+++|+.|++++|+++.+|. .++.+++|++|++++|.++.++.. ...+++|+.|++++|.
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 88899999999999888876 788888888888888888764332 2244444444444443
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=2.2e-12 Score=121.10 Aligned_cols=127 Identities=25% Similarity=0.301 Sum_probs=65.0
Q ss_pred cEEEeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEc
Q 037679 523 EHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNF 602 (693)
Q Consensus 523 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l 602 (693)
+.++++++.+. .+|..+ .++|++|++++|.+.... ..+..+++|+.|++++|.++...+.. +..+++|++|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~---f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQS---FSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEEC
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhH---ccCCCCCCEEEC
Confidence 45666666653 333322 245666666666655332 44555555666666555555443321 234455555555
Q ss_pred cCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCC
Q 037679 603 PYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLS 656 (693)
Q Consensus 603 ~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 656 (693)
++|.++...+..|..+++|++|++++|.++...+..|..+++|+.|++++|++.
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555555444444555555555555555555333334444555555555555554
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.37 E-value=4.1e-12 Score=117.70 Aligned_cols=129 Identities=25% Similarity=0.252 Sum_probs=63.8
Q ss_pred CcEEEeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEE
Q 037679 522 LEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLN 601 (693)
Q Consensus 522 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~ 601 (693)
.+.++++++.+.. .|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+....+.. +..+++|++|+
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV---FDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT---TTTCTTCCEEE
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH---ccCCCccCEEE
Confidence 3556666666533 23222 256666666666665554444555566666666666555433221 23444455555
Q ss_pred ccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCC
Q 037679 602 FPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLS 656 (693)
Q Consensus 602 l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 656 (693)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 5555544333333444455555555555444333333344444445555444444
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=1.2e-10 Score=122.80 Aligned_cols=133 Identities=6% Similarity=0.130 Sum_probs=69.9
Q ss_pred cCccchhhccCC-CCcEEEccCCcCCCCCCccccCCCCCcEEECCCCc---CCCcccHHHHhhcCCCCCEEECCCCcCCc
Q 037679 17 TGHIPVEIRKLT-QLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNN---LSGTVDLNMLLLNLKSLTALVLSSNKLSL 92 (693)
Q Consensus 17 ~~~~~~~~~~~~-~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 92 (693)
+.+...+|.+++ .|+.+.+..+ ++.+...+|.+|.+|+.+.++.+. +......+ |.++.+|+.+.+..+ ++.
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~a--F~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQA--FMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTT--TTTCTTCCBCGGGTT-CSE
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhh--chhcccceeeccCCc-cce
Confidence 334555666664 4677666543 555666677777777777665442 33333333 666666666665543 444
Q ss_pred hhhhhhhcCCCCCcEEeccCCCCCch-hhhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeC
Q 037679 93 LTRATLNTNLPNFTVIGFNSCNLSEF-PYFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDL 156 (693)
Q Consensus 93 ~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l 156 (693)
.....|. .+.+|+.+.+... ++.+ ..++..+..|+.+.+..+ ++.++...+...+|+.+.+
T Consensus 128 I~~~aF~-~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~i 189 (394)
T 4gt6_A 128 IDSEAFH-HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHI 189 (394)
T ss_dssp ECTTTTT-TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEE
T ss_pred ehhhhhh-hhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEE
Confidence 4444454 6666666666443 2222 224556666666665543 3333333443344444433
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=6.6e-14 Score=132.48 Aligned_cols=129 Identities=22% Similarity=0.304 Sum_probs=90.7
Q ss_pred CCccEEEcccccccCccch------hhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcC
Q 037679 4 NKLSTLYLQHNQLTGHIPV------EIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNL 77 (693)
Q Consensus 4 ~~l~~L~ls~~~l~~~~~~------~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l 77 (693)
..++.++++.+.+++..|. .|..+++|++|++++|.+++ ++ .+.++++|++|++++|++.. ++.. +..+
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~--~~~~ 92 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENL--DAVA 92 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSH--HHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccch--hhcC
Confidence 3455555666666555554 77778888888888887775 44 77778888888888887763 3433 5666
Q ss_pred CCCCEEECCCCcCCchhhhhhhcCCCCCcEEeccCCCCCchhh--hhhcCCCccEEEcCCCCCCC
Q 037679 78 KSLTALVLSSNKLSLLTRATLNTNLPNFTVIGFNSCNLSEFPY--FLHNQDELVSLDLSSNKIAG 140 (693)
Q Consensus 78 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~--~l~~l~~L~~L~L~~~~~~~ 140 (693)
++|++|++++|.++... .+. .+++|++|++++|+++.++. .++.+++|++|++++|.++.
T Consensus 93 ~~L~~L~L~~N~l~~l~--~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 93 DTLEELWISYNQIASLS--GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHCSEEEEEEEECCCHH--HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CcCCEEECcCCcCCcCC--ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 77888888888777643 454 77778888888887776654 67777788888887777755
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.23 E-value=4e-11 Score=110.40 Aligned_cols=105 Identities=28% Similarity=0.300 Sum_probs=67.9
Q ss_pred cEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECC
Q 037679 7 STLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLS 86 (693)
Q Consensus 7 ~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~ 86 (693)
+.++++++.++ .+|..+. ++|++|++++|.++++.+..|.++++|++|+|++|++.+..+.. |.++++|++|+|+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~--~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV--FDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhH--hCCcchhhEEECC
Confidence 56677777765 4454443 66777777777777666667777777777777777776554433 5666777777777
Q ss_pred CCcCCchhhhhhhcCCCCCcEEeccCCCCCc
Q 037679 87 SNKLSLLTRATLNTNLPNFTVIGFNSCNLSE 117 (693)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 117 (693)
+|.++...+..|. .+++|++|++++|.+..
T Consensus 90 ~N~l~~l~~~~~~-~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPRGAFD-NLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCTTTTT-TCTTCSEEECCSSCBCT
T ss_pred CCccceeCHHHhc-cccCCCEEEeCCCCccc
Confidence 7766655554454 56666666666666553
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=4e-11 Score=109.97 Aligned_cols=105 Identities=29% Similarity=0.319 Sum_probs=77.2
Q ss_pred ccEEEcccccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 6 LSTLYLQHNQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 6 l~~L~ls~~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
.++++++++.++. +|..+ .++|++|++++|.++++.+..|.++++|++|+|++|++.+..+.. |.++++|++|+|
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV--FDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhh--ccCCCCCCEEEC
Confidence 4677888888774 45444 377888888888888777777888888888888888877666544 677788888888
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLS 116 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 116 (693)
++|.++...+..|. .+++|+.|++++|.++
T Consensus 86 ~~N~l~~~~~~~~~-~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLKSIPRGAFD-NLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCCCCCTTTTT-TCTTCCEEECCSSCBC
T ss_pred CCCccCEeCHHHhc-CCCCCCEEEeCCCCCC
Confidence 88877766665565 7777777777777665
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.22 E-value=6.5e-11 Score=108.60 Aligned_cols=109 Identities=25% Similarity=0.183 Sum_probs=77.1
Q ss_pred CcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEe
Q 037679 570 LDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLL 649 (693)
Q Consensus 570 L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 649 (693)
.+.+++++|.+..++.. -.+++++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|+.|+
T Consensus 11 ~~~l~~s~n~l~~ip~~------~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTG------IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTSCCSSCCSC------CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcCccCcc------CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 45667777666654432 125677777777777766666777778888888888877766666667777888888
Q ss_pred ccCccCCCCcchhhcCCCCCCeEEccCCcccCCcc
Q 037679 650 LGFNQLSGRIPVEISNLTQLQSLQLSSNQLEGSVP 684 (693)
Q Consensus 650 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 684 (693)
+++|++.+..+..|..+++|++|++++|++.+..+
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88888775555567777888888888888775544
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=4e-13 Score=127.10 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=38.4
Q ss_pred cccccCCeeEecccccCCCchh------hhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccC
Q 037679 469 QKSSLLEDLRLSYTRFSGKIPD------SIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGN 542 (693)
Q Consensus 469 ~~~~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 542 (693)
.....++.++++.+.+.+..+. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+. ..|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3334444455555444433322 44445555555555554443 22 4444455555555555442 23333333
Q ss_pred CccccEEEecCcccc
Q 037679 543 LASLKALEISSFNFS 557 (693)
Q Consensus 543 l~~L~~L~l~~~~~~ 557 (693)
+++|+.|++++|.+.
T Consensus 92 ~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 92 ADTLEELWISYNQIA 106 (198)
T ss_dssp HHHCSEEEEEEEECC
T ss_pred CCcCCEEECcCCcCC
Confidence 344444444444443
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=2.4e-12 Score=133.91 Aligned_cols=169 Identities=17% Similarity=0.149 Sum_probs=91.1
Q ss_pred CCCcEEeccCCcccccccccccc-----cCCCcEEEeeCCcCCCCccccc-cCCccccEEEecCccccccchhcc-----
Q 037679 496 ESLSYLGISDCSFIGKIPSSLFN-----LTKLEHLYLSGNRFLDELPTSI-GNLASLKALEISSFNFSSTLQASL----- 564 (693)
Q Consensus 496 ~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l----- 564 (693)
+.|+.|++++|.++......+.. .++|++|++++|.+.......+ ..+++|++|++++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45556666655554332222221 2456666666666543322222 234566666666666654433322
Q ss_pred CCCCCCcEEecccCCCCccccchh-HhhhcCCCCcEEEccCCCCCCcc----cccccCCCCCCEEEccCCccCCCc----
Q 037679 565 GNLTQLDSLTISNSNFSRLMSSSL-SWLTNLNQLTSLNFPYCNLNNEI----PFGISNLTQLTALDLSYNQLTGPI---- 635 (693)
Q Consensus 565 ~~l~~L~~L~ls~n~l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~---- 635 (693)
...++|++|++++|.+++.....+ ..+...++|++|++++|.+.+.. +..+..+++|++|++++|.+++..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 234567777777776654322221 22355666777777777665432 344555667777777777776432
Q ss_pred cccccCcCcccEEeccCccCCCCcchhhc
Q 037679 636 PYSLMKLKKVSSLLLGFNQLSGRIPVEIS 664 (693)
Q Consensus 636 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 664 (693)
+..+..+++|++|++++|++.+.....+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 23334456777777777777654444443
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=1.3e-12 Score=135.79 Aligned_cols=165 Identities=19% Similarity=0.204 Sum_probs=126.1
Q ss_pred cCCCcEEEeeCCcCCCCcccccc-----CCccccEEEecCccccccchhcc-CCCCCCcEEecccCCCCccccchhHh-h
Q 037679 519 LTKLEHLYLSGNRFLDELPTSIG-----NLASLKALEISSFNFSSTLQASL-GNLTQLDSLTISNSNFSRLMSSSLSW-L 591 (693)
Q Consensus 519 l~~L~~L~l~~~~l~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~ls~n~l~~~~~~~~~~-l 591 (693)
.+.|+.|++++|.+.......+. ..++|++|++++|.+.......+ ..+++|+.|++++|.+.+.....+.. +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 57799999999998654433332 23799999999999876543333 34678999999999998665444332 2
Q ss_pred -hcCCCCcEEEccCCCCCCc----ccccccCCCCCCEEEccCCccCCCc----cccccCcCcccEEeccCccCCCC----
Q 037679 592 -TNLNQLTSLNFPYCNLNNE----IPFGISNLTQLTALDLSYNQLTGPI----PYSLMKLKKVSSLLLGFNQLSGR---- 658 (693)
Q Consensus 592 -~~l~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~---- 658 (693)
...++|++|++++|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|+.|++++|++++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3578999999999998753 3344577899999999999987542 55667788999999999999853
Q ss_pred cchhhcCCCCCCeEEccCCcccCCc
Q 037679 659 IPVEISNLTQLQSLQLSSNQLEGSV 683 (693)
Q Consensus 659 ~~~~l~~l~~L~~L~l~~n~~~~~~ 683 (693)
++..+...++|++||+++|++...-
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHH
Confidence 4455667899999999999987443
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.19 E-value=1.3e-09 Score=114.70 Aligned_cols=160 Identities=13% Similarity=0.173 Sum_probs=94.0
Q ss_pred CCCCCCccccCCC-CCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCC---cCCchhhhhhhcCCCCCcEEeccCCCC
Q 037679 40 LEGSVPSSIFELR-NLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSN---KLSLLTRATLNTNLPNFTVIGFNSCNL 115 (693)
Q Consensus 40 i~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~---~~~~~~~~~~~~~l~~L~~L~l~~~~l 115 (693)
++.+...+|.+++ .|+.+.+... ++.....+ |.++.+|+.+.+..+ .++.+...+|. .+.+|+.+.+.++ +
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~A--F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~-~c~~L~~i~~~~~-~ 125 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNA--FYNCTSLKRVTIQDNKPSCVKKIGRQAFM-FCSELTDIPILDS-V 125 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTT--TTTCTTCCEEEEGGGCCCCCCEECTTTTT-TCTTCCBCGGGTT-C
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHH--hhCCccCceEeecCCCCCeeeEechhhch-hcccceeeccCCc-c
Confidence 5556778888885 5888888653 55455555 888888888888764 25556666666 7777777666543 3
Q ss_pred Cchh-hhhhcCCCccEEEcCCCCCCCCCCCccCCCCCcEEeCCCCCCCCCCCCCCCCCCCEEeCCCCCCCCCcccccccc
Q 037679 116 SEFP-YFLHNQDELVSLDLSSNKIAGQDLLVLPWSKMNTLDLGFNKLQGPLPVPSLNGLQALDLSYNNLSGMLPECLGNF 194 (693)
Q Consensus 116 ~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~ 194 (693)
+.++ .++..+.+|+.+.+..+ .+.++.. .+..+..|+.+.+..+ +..+...+|..
T Consensus 126 ~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~---------------------~F~~c~~L~~i~~~~~-~~~I~~~aF~~- 181 (394)
T 4gt6_A 126 TEIDSEAFHHCEELDTVTIPEG-VTSVADG---------------------MFSYCYSLHTVTLPDS-VTAIEERAFTG- 181 (394)
T ss_dssp SEECTTTTTTCTTCCEEECCTT-CCEECTT---------------------TTTTCTTCCEEECCTT-CCEECTTTTTT-
T ss_pred ceehhhhhhhhcccccccccce-eeeeccc---------------------ceecccccccccccce-eeEeccccccc-
Confidence 3332 24566666666666533 2222222 2334455555555443 33333444543
Q ss_pred cccccEEEcccccccccccccccCCCCccEEEccCC
Q 037679 195 SVELSALKLQANNFYRIVPQTFMNGTNLMMIDFSNN 230 (693)
Q Consensus 195 ~~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~l~~n 230 (693)
. .|+.+.+..+ +..+...+|..+..++.......
T Consensus 182 ~-~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 182 T-ALTQIHIPAK-VTRIGTNAFSECFALSTITSDSE 215 (394)
T ss_dssp C-CCSEEEECTT-CCEECTTTTTTCTTCCEEEECCS
T ss_pred c-ceeEEEECCc-ccccccchhhhccccceeccccc
Confidence 4 5777776543 34455566777777776665543
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.17 E-value=1.2e-10 Score=107.23 Aligned_cols=106 Identities=19% Similarity=0.160 Sum_probs=74.0
Q ss_pred cEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEec
Q 037679 571 DSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLL 650 (693)
Q Consensus 571 ~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 650 (693)
+.++++++.+..++.. + .++|++|++++|.+++..|..+.++++|+.|++++|++++..+..|.++++|+.|++
T Consensus 15 ~~l~~~~n~l~~iP~~-~-----~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-I-----PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCSSCCSC-C-----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCCccCCC-c-----CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 5666666666554432 1 256777777777777666667777788888888888777555555677778888888
Q ss_pred cCccCCCCcchhhcCCCCCCeEEccCCcccCC
Q 037679 651 GFNQLSGRIPVEISNLTQLQSLQLSSNQLEGS 682 (693)
Q Consensus 651 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 682 (693)
++|++.+..+..|..+++|++|++++|++.+.
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 88887754444577778888888888877743
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.89 E-value=1e-07 Score=99.73 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=47.2
Q ss_pred CCCCcceeecccCCCcCCCcccccccccCCeeEecccccCCCchhhhhcCCCCcEEeccCCcccccccccccccCCCcEE
Q 037679 446 QLPNLQFLGVMKNPNLTGYLPQFQKSSLLEDLRLSYTRFSGKIPDSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHL 525 (693)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 525 (693)
++..|+.+.+..+ ........|..+..|+.+.+... +.......|.++.+|+.+.+.++.++.....+|.++.+|+.+
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 3444455544433 11222334445555555555322 222333445555555555555444444444445555555555
Q ss_pred EeeCCcCCCCccccccCCccccEEEec
Q 037679 526 YLSGNRFLDELPTSIGNLASLKALEIS 552 (693)
Q Consensus 526 ~l~~~~l~~~~~~~~~~l~~L~~L~l~ 552 (693)
.+..+ +......+|.+|++|+++.+.
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 55432 223333445555555555553
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.89 E-value=3.2e-09 Score=109.74 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=69.6
Q ss_pred EEEcccc-cccCccchhhccCCCCcEEEccC-CcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEEC
Q 037679 8 TLYLQHN-QLTGHIPVEIRKLTQLQIVRLAE-NQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVL 85 (693)
Q Consensus 8 ~L~ls~~-~l~~~~~~~~~~~~~L~~L~ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 85 (693)
.++++++ .++ .+|. |..+++|++|+|++ |.++.+.+.+|.++++|++|+|++|++.+..+.. |.++++|++|+|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~--~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA--FHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG--GGSCSCCCEEEC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH--hcCCcCCCEEeC
Confidence 4566666 666 3555 77777777777775 7777666677777777777777777777666655 677777777777
Q ss_pred CCCcCCchhhhhhhcCCCCCcEEeccCCCCC
Q 037679 86 SSNKLSLLTRATLNTNLPNFTVIGFNSCNLS 116 (693)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 116 (693)
++|.++...+..+. .++ |+.|++.+|.+.
T Consensus 88 ~~N~l~~~~~~~~~-~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNALESLSWKTVQ-GLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSCCSCCCSTTTC-SCC-CCEEECCSSCCC
T ss_pred CCCccceeCHHHcc-cCC-ceEEEeeCCCcc
Confidence 77777665554443 333 666666666655
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=4.1e-09 Score=108.50 Aligned_cols=160 Identities=21% Similarity=0.196 Sum_probs=91.4
Q ss_pred ccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccchhccC--CCCCCcEEecccC--C-CCccccchh
Q 037679 514 SSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLG--NLTQLDSLTISNS--N-FSRLMSSSL 588 (693)
Q Consensus 514 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~ls~n--~-l~~~~~~~~ 588 (693)
..+..+|+|+.|++.+|.-.. .+. +. +++|+.|++..|.+.......+. .+++|+.|+++.+ . ..+.....+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~-l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLS-IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCB-CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCce-ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 344556777777777763111 122 22 67777777777766554333333 5677777777531 1 111001001
Q ss_pred Hh-h--hcCCCCcEEEccCCCCCCcccccc---cCCCCCCEEEccCCccCCCc----cccccCcCcccEEeccCccCCCC
Q 037679 589 SW-L--TNLNQLTSLNFPYCNLNNEIPFGI---SNLTQLTALDLSYNQLTGPI----PYSLMKLKKVSSLLLGFNQLSGR 658 (693)
Q Consensus 589 ~~-l--~~l~~L~~L~l~~~~l~~~~~~~l---~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~ 658 (693)
.. + ..+++|+.|++.+|.+.+..+..+ ..+++|++|+++.|.+.+.. +..+..+++|++|++++|.+++.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 10 1 246778888888777764333222 34678888888888776532 33334567888888888887755
Q ss_pred cchhhcC-CCCCCeEEccCCc
Q 037679 659 IPVEISN-LTQLQSLQLSSNQ 678 (693)
Q Consensus 659 ~~~~l~~-l~~L~~L~l~~n~ 678 (693)
....+.. + ...+|++++.
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 4444443 3 4557777765
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.83 E-value=4.7e-07 Score=94.63 Aligned_cols=166 Identities=11% Similarity=0.057 Sum_probs=92.3
Q ss_pred hcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCccccccCCccccEEEecCccccccchhccCCCCCCcE
Q 037679 493 ENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIGNLASLKALEISSFNFSSTLQASLGNLTQLDS 572 (693)
Q Consensus 493 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 572 (693)
..+..+....+.... .......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ +.......+..+.+|+.
T Consensus 191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 334444555544432 2233344555666666666544 22333445566666777666543 44445556666667777
Q ss_pred EecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccC
Q 037679 573 LTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGF 652 (693)
Q Consensus 573 L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 652 (693)
+.+..+ +...... .+..+.+|+.+.+.++.++.....+|.+|.+|+.+++..+ ++.+...+|.+|.+|+.+.+..
T Consensus 268 i~l~~~-i~~i~~~---aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 268 LNFYAK-VKTVPYL---LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEECCC-CSEECTT---TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccc-ceecccc---ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 666443 3322221 2456666777777666665555566777777777777544 4434456677777777777754
Q ss_pred ccCCCCcchhhcCCC
Q 037679 653 NQLSGRIPVEISNLT 667 (693)
Q Consensus 653 n~~~~~~~~~l~~l~ 667 (693)
+ +......+|.++.
T Consensus 343 ~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 343 S-ITLIESGAFEGSS 356 (379)
T ss_dssp T-CCEECTTTTTTSS
T ss_pred c-cCEEchhHhhCCC
Confidence 3 4433445555554
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.78 E-value=1.6e-08 Score=104.51 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=82.9
Q ss_pred EEEccCC-cCCCCCCccccCCCCCcEEECCC-CcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhhhhhcCCCCCcEEe
Q 037679 32 IVRLAEN-QLEGSVPSSIFELRNLQALDLSN-NNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRATLNTNLPNFTVIG 109 (693)
Q Consensus 32 ~L~ls~n-~i~~~~~~~~~~l~~L~~L~Ls~-n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 109 (693)
.++.+++ .++. +|. |..+.+|+.|+|++ |.+.+..+.. |.++++|++|+|++|.++...+..|. ++++|+.|+
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~--~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRD--LRGLGELRNLTIVKSGLRFVAPDAFH-FTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGG--SCSCCCCSEEECCSSCCCEECTTGGG-SCSCCCEEE
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhH--hccccCCCEEECCCCccceeCHHHhc-CCcCCCEEe
Confidence 4688887 7874 566 88899999999986 8888777666 88899999999999999888887777 888888888
Q ss_pred ccCCCCCchhhhhhcCCCccEEEcCCCCCCC
Q 037679 110 FNSCNLSEFPYFLHNQDELVSLDLSSNKIAG 140 (693)
Q Consensus 110 l~~~~l~~~~~~l~~l~~L~~L~L~~~~~~~ 140 (693)
|++|+++.+|..+.....|++|++.+|.+..
T Consensus 87 l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 8888888777644333338888888887775
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=1.7e-08 Score=103.79 Aligned_cols=160 Identities=17% Similarity=0.198 Sum_probs=88.2
Q ss_pred hhhhcCCCCcEEeccCCcccccccccccccCCCcEEEeeCCcCCCCcccccc--CCccccEEEecCc--ccccc-----c
Q 037679 490 DSIENLESLSYLGISDCSFIGKIPSSLFNLTKLEHLYLSGNRFLDELPTSIG--NLASLKALEISSF--NFSST-----L 560 (693)
Q Consensus 490 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~--~l~~L~~L~l~~~--~~~~~-----~ 560 (693)
..+..+++|+.|.+.+|.-. .++. + .+++|+.|++..|.+.......+. .+|+|+.|+++.+ ...+. .
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44455666777777665211 1222 2 266777777776665433222232 4677777776421 11110 0
Q ss_pred hhcc--CCCCCCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCCCCCcc----cccccCCCCCCEEEccCCccCCC
Q 037679 561 QASL--GNLTQLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCNLNNEI----PFGISNLTQLTALDLSYNQLTGP 634 (693)
Q Consensus 561 ~~~l--~~l~~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~ 634 (693)
...+ ..+++|+.|++++|.+.+..+..+.....+++|++|+++.|.+.+.. +..+..+++|++|++++|.+++.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 1112 24677888888777766433333322235677888888887776542 23334567888888888877644
Q ss_pred ccccccC-cCcccEEeccCcc
Q 037679 635 IPYSLMK-LKKVSSLLLGFNQ 654 (693)
Q Consensus 635 ~~~~l~~-l~~L~~L~l~~n~ 654 (693)
....+.. + ...+++++++
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 4444432 2 3557777665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=1.4e-07 Score=87.48 Aligned_cols=121 Identities=13% Similarity=0.107 Sum_probs=83.3
Q ss_pred cchhhccCCCCcEEEccCC-cCCCC----CCccccCCCCCcEEECCCCcCCCccc--HHHHhhcCCCCCEEECCCCcCCc
Q 037679 20 IPVEIRKLTQLQIVRLAEN-QLEGS----VPSSIFELRNLQALDLSNNNLSGTVD--LNMLLLNLKSLTALVLSSNKLSL 92 (693)
Q Consensus 20 ~~~~~~~~~~L~~L~ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~--~~~~l~~l~~L~~L~L~~~~~~~ 92 (693)
+...+...+.|++|++++| .+.+. +..++...+.|++|+|++|++.+... ....+...++|++|+|++|.+.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4556677888888888888 77643 34556667888888888888764332 12235566788888888888877
Q ss_pred hhhhhhhc---CCCCCcEEec--cCCCCCc-----hhhhhhcCCCccEEEcCCCCCCC
Q 037679 93 LTRATLNT---NLPNFTVIGF--NSCNLSE-----FPYFLHNQDELVSLDLSSNKIAG 140 (693)
Q Consensus 93 ~~~~~~~~---~l~~L~~L~l--~~~~l~~-----~~~~l~~l~~L~~L~L~~~~~~~ 140 (693)
.+...++. ..++|++|++ ++|.++. +...+...+.|++|++++|.+..
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 65443321 5567888888 7777773 44466677788888888877643
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.41 E-value=1.8e-07 Score=86.74 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=90.8
Q ss_pred CCCCccEEEcccc-cccCc----cchhhccCCCCcEEEccCCcCCCC----CCccccCCCCCcEEECCCCcCCCcccH--
Q 037679 2 NLNKLSTLYLQHN-QLTGH----IPVEIRKLTQLQIVRLAENQLEGS----VPSSIFELRNLQALDLSNNNLSGTVDL-- 70 (693)
Q Consensus 2 ~~~~l~~L~ls~~-~l~~~----~~~~~~~~~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~~-- 70 (693)
+.++|++|++++| .+... +..++...++|++|++++|.+.+. +..++...+.|++|+|++|.+.+....
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4678999999999 88743 566677789999999999999854 345566778999999999998754321
Q ss_pred HHHhhcCCCCCEEEC--CCCcCCchhhhhhhc---CCCCCcEEeccCCCCC
Q 037679 71 NMLLLNLKSLTALVL--SSNKLSLLTRATLNT---NLPNFTVIGFNSCNLS 116 (693)
Q Consensus 71 ~~~l~~l~~L~~L~L--~~~~~~~~~~~~~~~---~l~~L~~L~l~~~~l~ 116 (693)
...+...++|++|+| ++|.+.+.....+.. ..++|++|++++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 223667889999999 889998876544432 5689999999999876
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=3.8e-07 Score=82.21 Aligned_cols=82 Identities=11% Similarity=0.237 Sum_probs=35.4
Q ss_pred CCcEEecccCCCCccccchhHhhhcCCCCcEEEccCCC-CCCcccccccCC----CCCCEEEccCC-ccCCCccccccCc
Q 037679 569 QLDSLTISNSNFSRLMSSSLSWLTNLNQLTSLNFPYCN-LNNEIPFGISNL----TQLTALDLSYN-QLTGPIPYSLMKL 642 (693)
Q Consensus 569 ~L~~L~ls~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~l~~l----~~L~~L~l~~n-~l~~~~~~~l~~l 642 (693)
.|++||+++|.+++. .+..+..+++|++|++++|. +++..-..+..+ ++|++|++++| ++++..-..+..+
T Consensus 62 ~L~~LDLs~~~Itd~---GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI---GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CEEEEEEESCCCCGG---GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred eEeEEeCcCCCccHH---HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 455555555544332 22233445555555555553 333222223322 24455555444 2443333334444
Q ss_pred CcccEEeccCc
Q 037679 643 KKVSSLLLGFN 653 (693)
Q Consensus 643 ~~L~~L~l~~n 653 (693)
++|++|++++|
T Consensus 139 ~~L~~L~L~~c 149 (176)
T 3e4g_A 139 RNLKYLFLSDL 149 (176)
T ss_dssp TTCCEEEEESC
T ss_pred CCCCEEECCCC
Confidence 44555555444
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=8.5e-07 Score=79.91 Aligned_cols=88 Identities=13% Similarity=0.095 Sum_probs=61.8
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcC----CCCCEEECCCCc-CCchhhhhhhcC
Q 037679 27 LTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNL----KSLTALVLSSNK-LSLLTRATLNTN 101 (693)
Q Consensus 27 ~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l----~~L~~L~L~~~~-~~~~~~~~~~~~ 101 (693)
-..|++||++++.|++..-..+.++++|++|+|++|...+..... .++.+ ++|++|+|++|. +++.+...+. +
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~ 137 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIALH-H 137 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-G
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-c
Confidence 356888888888887777777788888888888888633232221 24443 468888888874 7777777776 7
Q ss_pred CCCCcEEeccCCC-CC
Q 037679 102 LPNFTVIGFNSCN-LS 116 (693)
Q Consensus 102 l~~L~~L~l~~~~-l~ 116 (693)
+++|++|++++|. ++
T Consensus 138 ~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVK 153 (176)
T ss_dssp CTTCCEEEEESCTTCC
T ss_pred CCCCCEEECCCCCCCC
Confidence 7888888888774 44
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.06 E-value=5.3e-06 Score=80.73 Aligned_cols=101 Identities=22% Similarity=0.304 Sum_probs=70.3
Q ss_pred EEccccccc---CccchhhccCCCCcEEEccCCcCCCC--CCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEE
Q 037679 9 LYLQHNQLT---GHIPVEIRKLTQLQIVRLAENQLEGS--VPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTAL 83 (693)
Q Consensus 9 L~ls~~~l~---~~~~~~~~~~~~L~~L~ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L 83 (693)
++++.|... ..++.....+++|+.|+|++|.++++ ++..+..+++|+.|+|++|++.+..... .+..+ +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~-~l~~l-~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD-KIKGL-KLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG-GGTTS-CCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh-hcccC-CcceE
Confidence 455666432 22233335689999999999999874 4567789999999999999998763321 23344 99999
Q ss_pred ECCCCcCCchhh------hhhhcCCCCCcEEecc
Q 037679 84 VLSSNKLSLLTR------ATLNTNLPNFTVIGFN 111 (693)
Q Consensus 84 ~L~~~~~~~~~~------~~~~~~l~~L~~L~l~ 111 (693)
+|++|++....+ ..+...+|+|+.|+-.
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 999999875322 1223388999998753
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=3.4e-06 Score=82.10 Aligned_cols=108 Identities=21% Similarity=0.257 Sum_probs=75.2
Q ss_pred hccCCCCcE--EEccCCcCC---CCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCCcCCchhhh-h
Q 037679 24 IRKLTQLQI--VRLAENQLE---GSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSNKLSLLTRA-T 97 (693)
Q Consensus 24 ~~~~~~L~~--L~ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~ 97 (693)
|...+.|.. ++++.|... ....-...++++|+.|+|++|++.+..+....+..+++|++|+|++|.+...... .
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 344444554 567777433 1122233678999999999999987554323378899999999999999876322 2
Q ss_pred hhcCCCCCcEEeccCCCCCc-hh-------hhhhcCCCccEEEc
Q 037679 98 LNTNLPNFTVIGFNSCNLSE-FP-------YFLHNQDELVSLDL 133 (693)
Q Consensus 98 ~~~~l~~L~~L~l~~~~l~~-~~-------~~l~~l~~L~~L~L 133 (693)
+. .+ +|++|++++|.+.. +| ..+..+++|+.||-
T Consensus 217 l~-~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 217 IK-GL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GT-TS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cc-cC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 22 34 99999999999873 32 35789999998864
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.51 E-value=0.00019 Score=65.81 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=70.1
Q ss_pred hhhccCCCCcEEEccCC-cCCCC----CCccccCCCCCcEEECCCCcCCCccc--HHHHhhcCCCCCEEECCCCcCCchh
Q 037679 22 VEIRKLTQLQIVRLAEN-QLEGS----VPSSIFELRNLQALDLSNNNLSGTVD--LNMLLLNLKSLTALVLSSNKLSLLT 94 (693)
Q Consensus 22 ~~~~~~~~L~~L~ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~--~~~~l~~l~~L~~L~L~~~~~~~~~ 94 (693)
..+..-+.|++|+++++ .|.+. +.+++..-..|+.|+|++|++.+... .++.+..-..|++|+|++|.|.+.+
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 33445567777777774 66533 34556666777777877777764332 2233556677788888877777666
Q ss_pred hhhhhc---CCCCCcEEeccCC---CCC-----chhhhhhcCCCccEEEcCCCC
Q 037679 95 RATLNT---NLPNFTVIGFNSC---NLS-----EFPYFLHNQDELVSLDLSSNK 137 (693)
Q Consensus 95 ~~~~~~---~l~~L~~L~l~~~---~l~-----~~~~~l~~l~~L~~L~L~~~~ 137 (693)
-..++. .-+.|++|+++++ .+. .+...+..-+.|++|+++.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 555443 2245777777654 333 233455666667777776554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.12 E-value=0.00059 Score=62.59 Aligned_cols=114 Identities=11% Similarity=0.111 Sum_probs=83.3
Q ss_pred CCCccEEEcccc-cccC----ccchhhccCCCCcEEEccCCcCCCCC----CccccCCCCCcEEECCCCcCCCcccHH--
Q 037679 3 LNKLSTLYLQHN-QLTG----HIPVEIRKLTQLQIVRLAENQLEGSV----PSSIFELRNLQALDLSNNNLSGTVDLN-- 71 (693)
Q Consensus 3 ~~~l~~L~ls~~-~l~~----~~~~~~~~~~~L~~L~ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~~~~~~~~~-- 71 (693)
=+.|++|+++++ .+.. .+.+++...+.|++|+|++|.|.+.. .+++..-..|+.|+|++|.+.+.....
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 367999999986 7763 36777888899999999999998553 455666789999999999997554322
Q ss_pred HHhhcCCCCCEEECCCC---cCCchhhhhhh---cCCCCCcEEeccCCCCC
Q 037679 72 MLLLNLKSLTALVLSSN---KLSLLTRATLN---TNLPNFTVIGFNSCNLS 116 (693)
Q Consensus 72 ~~l~~l~~L~~L~L~~~---~~~~~~~~~~~---~~l~~L~~L~l~~~~l~ 116 (693)
+.+..-..|++|+|+++ .+.+.....+. ..-++|+.|+++.+.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 23455678999999875 44543332222 15689999999877544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.54 E-value=0.0045 Score=52.87 Aligned_cols=57 Identities=26% Similarity=0.237 Sum_probs=44.7
Q ss_pred cEEEccCCCCC-CcccccccCCCCCCEEEccCCccCCCccccccCcCcccEEeccCccCC
Q 037679 598 TSLNFPYCNLN-NEIPFGISNLTQLTALDLSYNQLTGPIPYSLMKLKKVSSLLLGFNQLS 656 (693)
Q Consensus 598 ~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 656 (693)
..++.+++.++ ..+|..+. ++|++|+|++|.++...+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888876 35564443 67899999999998666777888889999999999886
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.14 E-value=0.0092 Score=50.91 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=35.7
Q ss_pred EEEccccccc-CccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCCCcCC
Q 037679 8 TLYLQHNQLT-GHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSNNNLS 65 (693)
Q Consensus 8 ~L~ls~~~l~-~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~ 65 (693)
+++.++++++ ..+|..+. ++|++|+|++|.|+.+.++.|..+++|+.|+|++|+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 23443332 45777777777777666666777777777777777654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.06 E-value=1.8 Score=34.47 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=31.7
Q ss_pred ccccCccchhhccCCCCcEEEccCCcCCCCCCccccCCCCCcEEECCC
Q 037679 14 NQLTGHIPVEIRKLTQLQIVRLAENQLEGSVPSSIFELRNLQALDLSN 61 (693)
Q Consensus 14 ~~l~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 61 (693)
..++.+-..+|.+|.+|+.+.+-.+ ++.+...+|.+|.+|+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3455666777777777777777554 4446667777777777777754
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.22 E-value=3.7 Score=32.55 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=38.1
Q ss_pred CCcCCCCCCccccCCCCCcEEECCCCcCCCcccHHHHhhcCCCCCEEECCCC
Q 037679 37 ENQLEGSVPSSIFELRNLQALDLSNNNLSGTVDLNMLLLNLKSLTALVLSSN 88 (693)
Q Consensus 37 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~~ 88 (693)
+..++.+...+|.+|.+|+.+.|..+ ++.....+ |.+|.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~a--F~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGM--FSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTS--STTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHH--HhccCCccEEEEcCC
Confidence 44677788889999999999999764 44455555 889999999998864
Done!