Query 037680
Match_columns 115
No_of_seqs 107 out of 1136
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1282 Serine carboxypeptidas 100.0 2.6E-35 5.7E-40 237.2 9.3 107 2-113 115-247 (454)
2 PLN02213 sinapoylglucose-malat 100.0 3.1E-32 6.6E-37 211.1 9.6 102 4-111 1-128 (319)
3 PF00450 Peptidase_S10: Serine 100.0 4.1E-31 8.8E-36 207.2 5.3 105 2-111 83-213 (415)
4 PLN02209 serine carboxypeptida 100.0 3.7E-30 8E-35 207.1 8.7 104 2-111 115-244 (437)
5 PLN03016 sinapoylglucose-malat 100.0 5E-30 1.1E-34 206.2 8.9 105 2-112 113-243 (433)
6 PTZ00472 serine carboxypeptida 99.9 5.8E-26 1.3E-30 183.8 8.9 105 2-108 119-252 (462)
7 KOG1283 Serine carboxypeptidas 99.8 7.1E-21 1.5E-25 147.7 5.2 99 3-106 70-193 (414)
8 COG2939 Carboxypeptidase C (ca 99.8 2E-20 4.3E-25 151.5 5.5 109 2-112 144-280 (498)
9 PF00681 Plectin: Plectin repe 90.7 0.26 5.5E-06 27.7 2.2 36 68-108 8-43 (45)
10 TIGR03611 RutD pyrimidine util 83.2 5.2 0.00011 28.1 6.0 49 3-62 38-86 (257)
11 PRK10673 acyl-CoA esterase; Pr 70.2 14 0.0003 26.4 5.2 47 3-62 41-87 (255)
12 PF12697 Abhydrolase_6: Alpha/ 67.2 12 0.00027 25.1 4.3 49 4-62 24-72 (228)
13 PF12532 DUF3732: Protein of u 64.8 13 0.00028 27.2 4.1 46 4-50 100-152 (193)
14 PF08060 NOSIC: NOSIC (NUC001) 64.5 7.5 0.00016 22.4 2.3 21 34-54 14-35 (53)
15 KOG3246 Sentrin-specific cyste 64.2 14 0.00031 27.8 4.3 49 4-53 109-158 (223)
16 PLN02385 hydrolase; alpha/beta 56.4 49 0.0011 25.4 6.3 53 5-62 116-168 (349)
17 TIGR03056 bchO_mg_che_rel puta 51.7 41 0.00088 24.0 4.9 48 4-62 54-101 (278)
18 TIGR01250 pro_imino_pep_2 prol 50.9 54 0.0012 23.1 5.4 50 4-62 53-102 (288)
19 PRK03592 haloalkane dehalogena 47.6 57 0.0012 24.1 5.3 46 5-62 54-99 (295)
20 PF14542 Acetyltransf_CG: GCN5 47.0 10 0.00022 23.4 0.9 15 41-55 63-77 (78)
21 PRK03204 haloalkane dehalogena 47.0 65 0.0014 24.0 5.5 49 3-62 59-107 (286)
22 PLN02298 hydrolase, alpha/beta 47.0 89 0.0019 23.6 6.3 53 5-62 88-140 (330)
23 PLN02824 hydrolase, alpha/beta 46.8 70 0.0015 23.6 5.6 50 4-62 55-108 (294)
24 PF10929 DUF2811: Protein of u 45.8 18 0.00039 21.5 1.8 42 34-77 5-46 (57)
25 PF10609 ParA: ParA/MinD ATPas 44.0 14 0.00031 23.4 1.2 11 7-17 3-13 (81)
26 PRK00870 haloalkane dehalogena 42.1 85 0.0018 23.3 5.5 49 4-62 73-121 (302)
27 KOG1455 Lysophospholipase [Lip 41.9 65 0.0014 25.6 4.8 51 7-62 85-135 (313)
28 PRK05855 short chain dehydroge 41.5 91 0.002 25.2 5.9 50 4-62 51-100 (582)
29 KOG3505 Mitochondrial/chloropl 37.7 12 0.00026 22.0 0.2 15 10-24 13-27 (55)
30 PLN02578 hydrolase 36.2 1E+02 0.0022 23.8 5.3 48 3-62 111-158 (354)
31 TIGR02427 protocat_pcaD 3-oxoa 36.1 1.4E+02 0.003 20.3 5.6 47 4-62 39-85 (251)
32 TIGR03695 menH_SHCHC 2-succiny 35.4 1.2E+02 0.0026 20.5 5.1 51 3-62 26-76 (251)
33 TIGR01607 PST-A Plasmodium sub 34.3 1.2E+02 0.0026 23.3 5.4 56 5-62 75-148 (332)
34 TIGR01249 pro_imino_pep_1 prol 33.8 1.4E+02 0.003 22.4 5.5 49 4-62 53-101 (306)
35 KOG3411 40S ribosomal protein 33.7 22 0.00048 24.8 1.0 57 7-65 63-130 (143)
36 PRK10749 lysophospholipase L2; 31.2 2.1E+02 0.0046 21.7 6.2 54 4-62 81-137 (330)
37 PF09851 SHOCT: Short C-termin 30.8 51 0.0011 16.7 1.9 14 95-108 14-27 (31)
38 TIGR02240 PHA_depoly_arom poly 29.7 2E+02 0.0042 21.0 5.7 48 3-62 50-97 (276)
39 PRK10349 carboxylesterase BioH 29.5 1.3E+02 0.0029 21.4 4.6 43 3-62 38-80 (256)
40 cd01452 VWA_26S_proteasome_sub 28.7 1.3E+02 0.0028 21.8 4.4 46 1-53 1-47 (187)
41 TIGR03100 hydr1_PEP hydrolase, 28.6 2.4E+02 0.0052 20.9 6.0 49 5-62 58-106 (274)
42 PRK05077 frsA fermentation/res 27.9 1.9E+02 0.0041 23.3 5.6 49 5-62 223-271 (414)
43 PF11288 DUF3089: Protein of u 27.1 1.3E+02 0.0028 22.4 4.2 28 33-62 74-101 (207)
44 smart00250 PLEC Plectin repeat 26.3 28 0.00061 18.3 0.4 25 73-101 12-36 (38)
45 TIGR03230 lipo_lipase lipoprot 26.3 2.6E+02 0.0057 23.1 6.2 53 4-62 73-125 (442)
46 COG0221 Ppa Inorganic pyrophos 26.1 1.9E+02 0.004 20.9 4.8 33 30-62 118-151 (171)
47 PF00561 Abhydrolase_1: alpha/ 26.0 1.5E+02 0.0033 20.1 4.3 48 7-62 3-50 (230)
48 COG0596 MhpC Predicted hydrola 24.5 47 0.001 22.2 1.4 15 5-20 51-65 (282)
49 cd00707 Pancreat_lipase_like P 23.7 1.2E+02 0.0026 22.9 3.6 53 4-62 66-118 (275)
50 PF11943 DUF3460: Protein of u 23.7 69 0.0015 19.2 1.8 17 38-54 6-22 (60)
51 PF07533 BRK: BRK domain; Int 23.3 46 0.001 18.7 0.9 12 43-54 30-41 (46)
52 PF01738 DLH: Dienelactone hyd 23.2 1.1E+02 0.0024 21.6 3.2 37 9-50 180-217 (218)
53 KOG4409 Predicted hydrolase/ac 23.1 1.8E+02 0.004 23.6 4.6 52 3-62 115-166 (365)
54 PF12638 Staygreen: Staygreen 22.2 64 0.0014 22.9 1.7 18 44-61 113-130 (151)
55 PF14176 YxiJ: YxiJ-like prote 22.1 42 0.0009 22.5 0.7 13 42-54 68-80 (108)
56 PF10230 DUF2305: Uncharacteri 21.9 2.6E+02 0.0056 21.0 5.1 32 30-62 59-90 (266)
57 PF05577 Peptidase_S28: Serine 21.9 2.4E+02 0.0053 22.4 5.2 33 30-62 87-119 (434)
58 PF04056 Ssl1: Ssl1-like; Int 21.9 82 0.0018 23.1 2.3 30 24-53 10-39 (193)
59 PLN03084 alpha/beta hydrolase 21.8 2.1E+02 0.0046 22.8 4.8 52 3-62 152-203 (383)
60 COG2885 OmpA Outer membrane pr 21.5 3E+02 0.0065 19.3 5.3 68 8-85 77-163 (190)
No 1
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-35 Score=237.21 Aligned_cols=107 Identities=35% Similarity=0.599 Sum_probs=100.8
Q ss_pred CcceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc------------hhhhh--
Q 037680 2 MNMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG------------VTHLY-- 67 (115)
Q Consensus 2 n~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G------------~~I~~-- 67 (115)
||.||||||||||||||||++++.++. ++|+.+|+|++.||+.||++||||++|||||+| ++|++
T Consensus 115 nk~aNiLfLd~PvGvGFSYs~~~~~~~-~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N 193 (454)
T KOG1282|consen 115 NKEANILFLDQPVGVGFSYSNTSSDYK-TGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGN 193 (454)
T ss_pred cccccEEEEecCCcCCccccCCCCcCc-CCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhcc
Confidence 789999999999999999999988886 799999999999999999999999999999999 44443
Q ss_pred ------------hhccCCccCccccccchhhhhhhcCCccCCCCHHHHHHHHhcCCCC
Q 037680 68 ------------FRRGNAWVDDATGATDLFEHRWTTGLMHAFNSDQTHKGLFTNCDCV 113 (115)
Q Consensus 68 ------------i~IGNg~~d~~~~~~~~~~~~~~~~~~~gli~~~~~~~~~~~C~~~ 113 (115)
++||||++|+.+|..++.+|++. |||||+++++.+++.|++.
T Consensus 194 ~~~~~~~iNLkG~~IGNg~td~~~~~~~~~~~a~~----h~liSde~~~~l~~~C~~~ 247 (454)
T KOG1282|consen 194 KKCCKPNINLKGYAIGNGLTDPEIDYNGRIPFAWG----HGLISDELYESLKRACDFS 247 (454)
T ss_pred ccccCCcccceEEEecCcccCccccccchhhhhhh----cccCCHHHHHHHHHHhccC
Confidence 99999999999999999999999 9999999999999999873
No 2
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=99.97 E-value=3.1e-32 Score=211.14 Aligned_cols=102 Identities=26% Similarity=0.331 Sum_probs=91.8
Q ss_pred ceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc------------hhhhh----
Q 037680 4 MAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG------------VTHLY---- 67 (115)
Q Consensus 4 ~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G------------~~I~~---- 67 (115)
.|||||||||+||||||++....+ .+++++|+++++||+.||++||+|+++||||+| ++|++
T Consensus 1 ~aNvLfiDqPvGvGfSy~~~~~~~--~~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~ 78 (319)
T PLN02213 1 MANIIFLDQPVGSGFSYSKTPIDK--TGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYI 78 (319)
T ss_pred CccEEEecCCCCCCCCCCCCCCCc--cccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhccc
Confidence 489999999999999998765444 466677799999999999999999999999999 44432
Q ss_pred ----------hhccCCccCccccccchhhhhhhcCCccCCCCHHHHHHHHhcCC
Q 037680 68 ----------FRRGNAWVDDATGATDLFEHRWTTGLMHAFNSDQTHKGLFTNCD 111 (115)
Q Consensus 68 ----------i~IGNg~~d~~~~~~~~~~~~~~~~~~~gli~~~~~~~~~~~C~ 111 (115)
++|||||+||..|..++.+|+|. +|||++++++.+++.|.
T Consensus 79 ~~~~~inLkGi~IGNg~t~~~~~~~~~~~~~~~----~gli~~~~~~~~~~~c~ 128 (319)
T PLN02213 79 CCEPPINLQGYMLGNPVTYMDFEQNFRIPYAYG----MGLISDEIYEPMKRICN 128 (319)
T ss_pred ccCCceeeeEEEeCCCCCCccccchhHhhHHHh----cCCCCHHHHHHHHHhcC
Confidence 99999999999999999999999 99999999999999996
No 3
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=99.97 E-value=4.1e-31 Score=207.22 Aligned_cols=105 Identities=27% Similarity=0.501 Sum_probs=91.1
Q ss_pred CcceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc------------hhhhh--
Q 037680 2 MNMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG------------VTHLY-- 67 (115)
Q Consensus 2 n~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G------------~~I~~-- 67 (115)
|+.||||||||||||||||+.....+. ++++++|+++++||+.||++||+|+++||||+| .+|++
T Consensus 83 ~~~an~l~iD~PvGtGfS~~~~~~~~~-~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~ 161 (415)
T PF00450_consen 83 NKFANLLFIDQPVGTGFSYGNDPSDYV-WNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQN 161 (415)
T ss_dssp GGTSEEEEE--STTSTT-EESSGGGGS--SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHT
T ss_pred ccccceEEEeecCceEEeecccccccc-chhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcc
Confidence 688999999999999999998876555 799999999999999999999999999999999 33332
Q ss_pred ------------hhccCCccCccccccchhhhhhhcCCccCCCCHHHHHHHHhcCC
Q 037680 68 ------------FRRGNAWVDDATGATDLFEHRWTTGLMHAFNSDQTHKGLFTNCD 111 (115)
Q Consensus 68 ------------i~IGNg~~d~~~~~~~~~~~~~~~~~~~gli~~~~~~~~~~~C~ 111 (115)
++|||||+||..|..++.+|++. +|+|++++++.+.+.|+
T Consensus 162 ~~~~~~~inLkGi~IGng~~dp~~~~~s~~~~~~~----~gli~~~~~~~~~~~~~ 213 (415)
T PF00450_consen 162 KKGDQPKINLKGIAIGNGWIDPRIQYNSYADYAYY----HGLIDDQQYDDLNKACE 213 (415)
T ss_dssp CC--STTSEEEEEEEESE-SBHHHHHHHHHHHHHH----TTSS-HHHHHHHHHHHT
T ss_pred ccccccccccccceecCccccccccceeecccccc----cCcccHHHHHHHHHHhh
Confidence 99999999999999999999999 99999999999999885
No 4
>PLN02209 serine carboxypeptidase
Probab=99.96 E-value=3.7e-30 Score=207.12 Aligned_cols=104 Identities=24% Similarity=0.297 Sum_probs=93.5
Q ss_pred CcceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc------------hhhhh--
Q 037680 2 MNMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG------------VTHLY-- 67 (115)
Q Consensus 2 n~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G------------~~I~~-- 67 (115)
|+.|||||||||+||||||+...... .+++++|+++++||+.||++||+|+++||||+| ++|++
T Consensus 115 ~~~anllfiDqPvGtGfSy~~~~~~~--~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~ 192 (437)
T PLN02209 115 TKTANIIFLDQPVGSGFSYSKTPIER--TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGN 192 (437)
T ss_pred hhcCcEEEecCCCCCCccCCCCCCCc--cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhc
Confidence 67899999999999999998776444 356677899999999999999999999999999 33422
Q ss_pred ------------hhccCCccCccccccchhhhhhhcCCccCCCCHHHHHHHHhcCC
Q 037680 68 ------------FRRGNAWVDDATGATDLFEHRWTTGLMHAFNSDQTHKGLFTNCD 111 (115)
Q Consensus 68 ------------i~IGNg~~d~~~~~~~~~~~~~~~~~~~gli~~~~~~~~~~~C~ 111 (115)
++|||||+||..|..++.+|++. +|||++++++.+++.|.
T Consensus 193 ~~~~~~~inl~Gi~igng~td~~~q~~~~~~y~~~----~glI~~~~~~~~~~~c~ 244 (437)
T PLN02209 193 YICCNPPINLQGYVLGNPITHIEFEQNFRIPYAHG----MSLISDELYESLKRICK 244 (437)
T ss_pred ccccCCceeeeeEEecCcccChhhhhhhHHHHHhc----cCCCCHHHHHHHHHhcc
Confidence 89999999999999999999999 99999999999999996
No 5
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=99.96 E-value=5e-30 Score=206.17 Aligned_cols=105 Identities=26% Similarity=0.316 Sum_probs=94.1
Q ss_pred CcceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc------------hhhhh--
Q 037680 2 MNMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG------------VTHLY-- 67 (115)
Q Consensus 2 n~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G------------~~I~~-- 67 (115)
|+.|||||||||+||||||+...... .+++++|+++++||+.||++||+|+++||||+| ++|++
T Consensus 113 ~~~anllfiDqPvGtGfSy~~~~~~~--~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n 190 (433)
T PLN03016 113 TKMANIIFLDQPVGSGFSYSKTPIDK--TGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGN 190 (433)
T ss_pred hhcCcEEEecCCCCCCccCCCCCCCc--cCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhc
Confidence 67899999999999999998776543 466677799999999999999999999999999 33422
Q ss_pred ------------hhccCCccCccccccchhhhhhhcCCccCCCCHHHHHHHHhcCCC
Q 037680 68 ------------FRRGNAWVDDATGATDLFEHRWTTGLMHAFNSDQTHKGLFTNCDC 112 (115)
Q Consensus 68 ------------i~IGNg~~d~~~~~~~~~~~~~~~~~~~gli~~~~~~~~~~~C~~ 112 (115)
++||||++||..|..++.+|+|. +|||++++++.+++.|..
T Consensus 191 ~~~~~~~inLkGi~iGNg~t~~~~~~~~~~~y~~~----~glI~~~~~~~i~~~c~~ 243 (433)
T PLN03016 191 YICCEPPINLQGYMLGNPVTYMDFEQNFRIPYAYG----MGLISDEIYEPMKRICNG 243 (433)
T ss_pred ccccCCcccceeeEecCCCcCchhhhhhHHHHHHh----cCCCCHHHHHHHHHHhcc
Confidence 89999999999999999999999 999999999999999963
No 6
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=99.93 E-value=5.8e-26 Score=183.79 Aligned_cols=105 Identities=22% Similarity=0.371 Sum_probs=92.2
Q ss_pred CcceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc------------hhhhh--
Q 037680 2 MNMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG------------VTHLY-- 67 (115)
Q Consensus 2 n~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G------------~~I~~-- 67 (115)
|+.+||||||||+||||||+... ++. .+++++|+|+++||+.||++||+++.+++||+| .+|++
T Consensus 119 ~~~~~~l~iDqP~G~G~S~~~~~-~~~-~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n 196 (462)
T PTZ00472 119 NNEAYVIYVDQPAGVGFSYADKA-DYD-HNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGN 196 (462)
T ss_pred ccccCeEEEeCCCCcCcccCCCC-CCC-CChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhc
Confidence 67899999999999999998754 454 688999999999999999999999999999999 34431
Q ss_pred ------------hhccCCccCccccccchhhhhhh---cCCccCCCCHHHHHHHHh
Q 037680 68 ------------FRRGNAWVDDATGATDLFEHRWT---TGLMHAFNSDQTHKGLFT 108 (115)
Q Consensus 68 ------------i~IGNg~~d~~~~~~~~~~~~~~---~~~~~gli~~~~~~~~~~ 108 (115)
++|||||+||.+|..++.+|+|. +.+++|+|++++++.+++
T Consensus 197 ~~~~~~~inLkGi~IGNg~~dp~~q~~~~~~~a~~~~~~~~~~~li~~~~~~~~~~ 252 (462)
T PTZ00472 197 KKGDGLYINLAGLAVGNGLTDPYTQYASYPRLAWDWCKEKLGAPCVSEEAYDEMSS 252 (462)
T ss_pred cccCCceeeeEEEEEeccccChhhhcccHHHHhhhcccccCCCCccCHHHHHHHHH
Confidence 99999999999999999999985 344579999999988864
No 7
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7.1e-21 Score=147.70 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=88.8
Q ss_pred cceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc----------------hhhh
Q 037680 3 NMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG----------------VTHL 66 (115)
Q Consensus 3 ~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G----------------~~I~ 66 (115)
+.|+|||||.|||+||||.+..+.|. ++.+++|.|+.+.|+.||..||||+.+||||+. ..|.
T Consensus 70 k~adllfvDnPVGaGfSyVdg~~~Y~-~~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk 148 (414)
T KOG1283|consen 70 KDADLLFVDNPVGAGFSYVDGSSAYT-TNNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIK 148 (414)
T ss_pred hhccEEEecCCCcCceeeecCccccc-ccHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHh
Confidence 67999999999999999999887776 899999999999999999999999999999997 2332
Q ss_pred h---------hhccCCccCccccccchhhhhhhcCCccCCCCHHHHHHH
Q 037680 67 Y---------FRRGNAWVDDATGATDLFEHRWTTGLMHAFNSDQTHKGL 106 (115)
Q Consensus 67 ~---------i~IGNg~~d~~~~~~~~~~~~~~~~~~~gli~~~~~~~~ 106 (115)
+ +++|+.||.|..-..+..+|++. .+++++...+..
T Consensus 149 ~G~i~~nf~~VaLGDSWISP~D~V~SWGP~L~~----~S~LDD~GLds~ 193 (414)
T KOG1283|consen 149 RGEIKLNFIGVALGDSWISPEDFVFSWGPLLKH----VSRLDDNGLDSS 193 (414)
T ss_pred cCceeecceeEEccCcccChhHhhhcchHHHHh----hhhhcccCccch
Confidence 2 99999999999999999999999 899988776544
No 8
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=99.81 E-value=2e-20 Score=151.47 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=93.7
Q ss_pred CcceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCC--cEEEEc------------hhhhh
Q 037680 2 MNMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTS--FFNTLG------------VTHLY 67 (115)
Q Consensus 2 n~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~--~~~i~G------------~~I~~ 67 (115)
+.+++|||||||+|||||++... +.. .+...+.+|++.|++.||+.||+|.+. ++||+| ++|+.
T Consensus 144 ~~~adLvFiDqPvGTGfS~a~~~-e~~-~d~~~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~ 221 (498)
T COG2939 144 LDFADLVFIDQPVGTGFSRALGD-EKK-KDFEGAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLE 221 (498)
T ss_pred ccCCceEEEecCcccCccccccc-ccc-cchhccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHH
Confidence 56899999999999999998322 333 788899999999999999999999888 999999 22222
Q ss_pred -------------hhccCC-ccCccccccchhhhhhhcCCccCCCCHHHHHHHHhcCCC
Q 037680 68 -------------FRRGNA-WVDDATGATDLFEHRWTTGLMHAFNSDQTHKGLFTNCDC 112 (115)
Q Consensus 68 -------------i~IGNg-~~d~~~~~~~~~~~~~~~~~~~gli~~~~~~~~~~~C~~ 112 (115)
++|||| ||||.+|...|..++...+..++..+++.++.+.+.|..
T Consensus 222 ~~~~~~~~~nlssvligng~~t~Pl~~~~~y~~~a~~~~~~~~~l~~e~~~~~~~~~~~ 280 (498)
T COG2939 222 DNIALNGNVNLSSVLIGNGLWTDPLTQYLTYEPIAAEKGPYDGVLSSEECTKAEKYCAG 280 (498)
T ss_pred hccccCCceEeeeeeecCCcccChhHHHHHhhhhHhhcCCCCCcCcHHHHHHHHHHhhh
Confidence 999999 999999999999999876666788999999999998864
No 9
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=90.66 E-value=0.26 Score=27.65 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=29.4
Q ss_pred hhccCCccCccccccchhhhhhhcCCccCCCCHHHHHHHHh
Q 037680 68 FRRGNAWVDDATGATDLFEHRWTTGLMHAFNSDQTHKGLFT 108 (115)
Q Consensus 68 i~IGNg~~d~~~~~~~~~~~~~~~~~~~gli~~~~~~~~~~ 108 (115)
.++| |.+||.....-..+=|+. .|+||++.+..+.+
T Consensus 8 ~~~g-Giidp~tg~~lsv~~A~~----~glId~~~~~~L~e 43 (45)
T PF00681_consen 8 LATG-GIIDPETGERLSVEEAIQ----RGLIDSDTAQKLLE 43 (45)
T ss_dssp HTTT-SEEETTTTEEEEHHHHHH----TTSS-HHHHHHHHH
T ss_pred eeee-eEEeCCCCeEEcHHHHHH----CCCcCHHHHHHHHc
Confidence 5666 999999887777788899 99999999988765
No 10
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=83.21 E-value=5.2 Score=28.06 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=33.1
Q ss_pred cceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 3 NMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 3 ~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
+..+++-+|.| |.|.|-...... .+-++.++++.+++... ...++++.|
T Consensus 38 ~~~~vi~~D~~-G~G~S~~~~~~~---~~~~~~~~~~~~~i~~~-------~~~~~~l~G 86 (257)
T TIGR03611 38 QRFHVVTYDHR-GTGRSPGELPPG---YSIAHMADDVLQLLDAL-------NIERFHFVG 86 (257)
T ss_pred hccEEEEEcCC-CCCCCCCCCccc---CCHHHHHHHHHHHHHHh-------CCCcEEEEE
Confidence 35689999999 788885432221 35667777777777542 335689998
No 11
>PRK10673 acyl-CoA esterase; Provisional
Probab=70.16 E-value=14 Score=26.37 Aligned_cols=47 Identities=19% Similarity=0.065 Sum_probs=33.5
Q ss_pred cceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 3 NMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 3 ~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
+..+++.+|.| |.|-|.... . .+-++.++++.++|..+ ...+++|.|
T Consensus 41 ~~~~vi~~D~~-G~G~s~~~~--~---~~~~~~~~d~~~~l~~l-------~~~~~~lvG 87 (255)
T PRK10673 41 NDHDIIQVDMR-NHGLSPRDP--V---MNYPAMAQDLLDTLDAL-------QIEKATFIG 87 (255)
T ss_pred hCCeEEEECCC-CCCCCCCCC--C---CCHHHHHHHHHHHHHHc-------CCCceEEEE
Confidence 34589999999 778775321 1 46677889999988753 335689999
No 12
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=67.24 E-value=12 Score=25.15 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=32.8
Q ss_pred ceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 4 MAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 4 ~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
..+++.+|.| |.|.|-.... ....+-++.++++.++|+.. . .+++++.|
T Consensus 24 ~~~v~~~d~~-G~G~s~~~~~--~~~~~~~~~~~~l~~~l~~~----~---~~~~~lvG 72 (228)
T PF12697_consen 24 GYRVIAFDLP-GHGRSDPPPD--YSPYSIEDYAEDLAELLDAL----G---IKKVILVG 72 (228)
T ss_dssp TSEEEEEECT-TSTTSSSHSS--GSGGSHHHHHHHHHHHHHHT----T---TSSEEEEE
T ss_pred CCEEEEEecC-Cccccccccc--cCCcchhhhhhhhhhccccc----c---cccccccc
Confidence 4688999999 7888765432 11145666777777776543 2 26899999
No 13
>PF12532 DUF3732: Protein of unknown function (DUF3732); InterPro: IPR022205 This domain family is found in bacteria and eukaryotes, and is typically between 180 and 198 amino acids in length. There is a conserved DQP sequence motif.
Probab=64.80 E-value=13 Score=27.18 Aligned_cols=46 Identities=11% Similarity=0.293 Sum_probs=32.5
Q ss_pred ceeeeEEeCCCCcccccccCCC------CC-CCCCcHHHHHHHHHHHHHHHhhC
Q 037680 4 MAYAISLECPAGMGLSYSNTKS------DY-NPNADKSTAQDSYTFPISWLERL 50 (115)
Q Consensus 4 ~an~lyiDqPvGvGfSy~~~~~------~~-~~~~~~~~a~~~~~fL~~F~~~f 50 (115)
+-+.|++|||..|=|.- .... .. ...+|..+.+.++++|-.|.++-
T Consensus 100 VP~fL~lDQPSQvYfp~-~~~~~~~~~~~~~~~d~D~~aV~~~F~~L~~~~~~~ 152 (193)
T PF12532_consen 100 VPSFLFLDQPSQVYFPS-RDKSEDFDEEELRERDEDIAAVRKMFSLLADFIKEI 152 (193)
T ss_pred CCCeeeecCCCcCcCCC-cccccccchhhccccchHHHHHHHHHHHHHHHHHHh
Confidence 34789999999998876 1111 11 01467778888999999999863
No 14
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=64.51 E-value=7.5 Score=22.42 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHh-hCCCCC
Q 037680 34 STAQDSYTFPISWLE-RLPQYK 54 (115)
Q Consensus 34 ~~a~~~~~fL~~F~~-~fP~~~ 54 (115)
..-..++.++++||. +|||+.
T Consensus 14 ~ei~~~~~~lre~Y~~~FPEL~ 35 (53)
T PF08060_consen 14 KEINLLHMRLREWYSWHFPELE 35 (53)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHH
T ss_pred HHHHHHHHHHHHHHHccchhHH
Confidence 344567899999998 699984
No 15
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]
Probab=64.16 E-value=14 Score=27.75 Aligned_cols=49 Identities=10% Similarity=0.020 Sum_probs=34.8
Q ss_pred ceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhC-CCC
Q 037680 4 MAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERL-PQY 53 (115)
Q Consensus 4 ~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~f-P~~ 53 (115)
++.+|-+++|.|++|=|....++- ..+-.++.+.+-.+|+..+.++ |+.
T Consensus 109 HWSLLV~sr~~~~f~hyDS~~n~n-t~~a~~l~~kl~~ll~~~~~~~~~~~ 158 (223)
T KOG3246|consen 109 HWSLLVFSRPDGKFYHYDSLSNGN-TKDAKSLMKKLRALLKKKFAKRVECK 158 (223)
T ss_pred ceEEEEEEeeCCcEEEeecccCCC-cHHHHHHHHHHHHHHhhhhhhccccc
Confidence 678999999999999987654332 2455666677777777766665 443
No 16
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=56.37 E-value=49 Score=25.42 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=36.4
Q ss_pred eeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 5 AYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 5 an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
.+++-+|.| |.|.|-... ++. .+-+..++|+.++++.. ...+++...+++|.|
T Consensus 116 ~~v~~~D~~-G~G~S~~~~--~~~-~~~~~~~~dv~~~l~~l-~~~~~~~~~~~~LvG 168 (349)
T PLN02385 116 YGVFAMDYP-GFGLSEGLH--GYI-PSFDDLVDDVIEHYSKI-KGNPEFRGLPSFLFG 168 (349)
T ss_pred CEEEEecCC-CCCCCCCCC--CCc-CCHHHHHHHHHHHHHHH-HhccccCCCCEEEEE
Confidence 578999998 788875322 232 35667788888777653 334556666899999
No 17
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=51.74 E-value=41 Score=24.03 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=32.0
Q ss_pred ceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 4 MAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 4 ~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
..+++.+|.| |.|.|..... .. .+-+..++++.++++. +..++++|.|
T Consensus 54 ~~~vi~~D~~-G~G~S~~~~~--~~-~~~~~~~~~l~~~i~~-------~~~~~~~lvG 101 (278)
T TIGR03056 54 SFRVVAPDLP-GHGFTRAPFR--FR-FTLPSMAEDLSALCAA-------EGLSPDGVIG 101 (278)
T ss_pred CcEEEeecCC-CCCCCCCccc--cC-CCHHHHHHHHHHHHHH-------cCCCCceEEE
Confidence 4688999988 7787754322 11 3667778888877753 2335788998
No 18
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=50.87 E-value=54 Score=23.10 Aligned_cols=50 Identities=18% Similarity=0.011 Sum_probs=31.4
Q ss_pred ceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 4 MAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 4 ~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
..+++.+|.| |.|.|......... .+-+..++++..+++. +..+++++.|
T Consensus 53 g~~vi~~d~~-G~G~s~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~liG 102 (288)
T TIGR01250 53 GREVIMYDQL-GCGYSDQPDDSDEL-WTIDYFVDELEEVREK-------LGLDKFYLLG 102 (288)
T ss_pred CCEEEEEcCC-CCCCCCCCCccccc-ccHHHHHHHHHHHHHH-------cCCCcEEEEE
Confidence 3689999999 88887543221101 3556677777665543 2345689998
No 19
>PRK03592 haloalkane dehalogenase; Provisional
Probab=47.56 E-value=57 Score=24.06 Aligned_cols=46 Identities=15% Similarity=0.028 Sum_probs=31.4
Q ss_pred eeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 5 AYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 5 an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
..++-+|.| |.|.|--.. .. .+-+..|+++..+++.. ...++++.|
T Consensus 54 ~~via~D~~-G~G~S~~~~-~~---~~~~~~a~dl~~ll~~l-------~~~~~~lvG 99 (295)
T PRK03592 54 GRCLAPDLI-GMGASDKPD-ID---YTFADHARYLDAWFDAL-------GLDDVVLVG 99 (295)
T ss_pred CEEEEEcCC-CCCCCCCCC-CC---CCHHHHHHHHHHHHHHh-------CCCCeEEEE
Confidence 478889998 888874322 11 35667778877777643 346799999
No 20
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=46.95 E-value=10 Score=23.44 Aligned_cols=15 Identities=20% Similarity=0.711 Sum_probs=11.6
Q ss_pred HHHHHHHhhCCCCCC
Q 037680 41 TFPISWLERLPQYKT 55 (115)
Q Consensus 41 ~fL~~F~~~fP~~~~ 55 (115)
.|...||+++|+|+.
T Consensus 63 ~y~~~~~~~hpey~d 77 (78)
T PF14542_consen 63 SYVAKYFRRHPEYQD 77 (78)
T ss_dssp HHHHHHHHH-GGGTT
T ss_pred HHHHHHHHhCccccc
Confidence 578889999999874
No 21
>PRK03204 haloalkane dehalogenase; Provisional
Probab=46.95 E-value=65 Score=24.03 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=29.6
Q ss_pred cceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 3 NMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 3 ~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
+..+++-+|.| |.|.|-... +.. .+.+..++++.++++. +...++++.|
T Consensus 59 ~~~~vi~~D~~-G~G~S~~~~--~~~-~~~~~~~~~~~~~~~~-------~~~~~~~lvG 107 (286)
T PRK03204 59 DRFRCVAPDYL-GFGLSERPS--GFG-YQIDEHARVIGEFVDH-------LGLDRYLSMG 107 (286)
T ss_pred CCcEEEEECCC-CCCCCCCCC--ccc-cCHHHHHHHHHHHHHH-------hCCCCEEEEE
Confidence 34689999999 778773221 111 3445556666555543 2345789998
No 22
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=46.95 E-value=89 Score=23.58 Aligned_cols=53 Identities=17% Similarity=0.091 Sum_probs=34.8
Q ss_pred eeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 5 AYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 5 an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
.+++-+|.| |.|.|-.. .++. .+-+..++|+..+++..-. ...+...+++|.|
T Consensus 88 y~V~~~D~r-GhG~S~~~--~~~~-~~~~~~~~D~~~~i~~l~~-~~~~~~~~i~l~G 140 (330)
T PLN02298 88 FACFALDLE-GHGRSEGL--RAYV-PNVDLVVEDCLSFFNSVKQ-REEFQGLPRFLYG 140 (330)
T ss_pred CEEEEecCC-CCCCCCCc--cccC-CCHHHHHHHHHHHHHHHHh-cccCCCCCEEEEE
Confidence 588999988 56777422 2222 3666788898888875543 2234445789999
No 23
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=46.83 E-value=70 Score=23.57 Aligned_cols=50 Identities=8% Similarity=-0.067 Sum_probs=32.9
Q ss_pred ceeeeEEeCCCCcccccccCCC----CCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 4 MAYAISLECPAGMGLSYSNTKS----DYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 4 ~an~lyiDqPvGvGfSy~~~~~----~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
..+++.+|.| |.|.|-..... ... .+-+.-|+++.++|+.. ..++++|.|
T Consensus 55 ~~~vi~~Dlp-G~G~S~~~~~~~~~~~~~-~~~~~~a~~l~~~l~~l-------~~~~~~lvG 108 (294)
T PLN02824 55 SHRVYAIDLL-GYGYSDKPNPRSAPPNSF-YTFETWGEQLNDFCSDV-------VGDPAFVIC 108 (294)
T ss_pred CCeEEEEcCC-CCCCCCCCcccccccccc-CCHHHHHHHHHHHHHHh-------cCCCeEEEE
Confidence 4588999987 77888543211 111 35667788888777644 336789999
No 24
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=45.81 E-value=18 Score=21.53 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCcEEEEchhhhhhhccCCccCc
Q 037680 34 STAQDSYTFPISWLERLPQYKTSFFNTLGVTHLYFRRGNAWVDD 77 (115)
Q Consensus 34 ~~a~~~~~fL~~F~~~fP~~~~~~~~i~G~~I~~i~IGNg~~d~ 77 (115)
+.-+++++.|+.|.+.||.+-.-.++- .+|..+.+-||+.|-
T Consensus 5 eiPe~L~~~m~~fie~hP~WDQ~Rl~~--aALa~FL~QnG~~~r 46 (57)
T PF10929_consen 5 EIPEDLHQAMKDFIETHPNWDQYRLFQ--AALAGFLLQNGCQDR 46 (57)
T ss_pred cccHHHHHHHHHHHHcCCCchHHHHHH--HHHHHHHHHcCchhH
Confidence 456889999999999999884322211 122225666665543
No 25
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=43.97 E-value=14 Score=23.42 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=8.0
Q ss_pred eeEEeCCCCcc
Q 037680 7 AISLECPAGMG 17 (115)
Q Consensus 7 ~lyiDqPvGvG 17 (115)
.|-||-|.|||
T Consensus 3 ~LiiD~PPGTg 13 (81)
T PF10609_consen 3 YLIIDLPPGTG 13 (81)
T ss_dssp EEEEE--SCSS
T ss_pred EEEEeCCCCCC
Confidence 58899999998
No 26
>PRK00870 haloalkane dehalogenase; Provisional
Probab=42.06 E-value=85 Score=23.31 Aligned_cols=49 Identities=10% Similarity=-0.058 Sum_probs=30.4
Q ss_pred ceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 4 MAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 4 ~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
..+++.+|.| |.|.|-.... .. ..+.+..++++.++|+. +...+++|.|
T Consensus 73 gy~vi~~Dl~-G~G~S~~~~~-~~-~~~~~~~a~~l~~~l~~-------l~~~~v~lvG 121 (302)
T PRK00870 73 GHRVIAPDLI-GFGRSDKPTR-RE-DYTYARHVEWMRSWFEQ-------LDLTDVTLVC 121 (302)
T ss_pred CCEEEEECCC-CCCCCCCCCC-cc-cCCHHHHHHHHHHHHHH-------cCCCCEEEEE
Confidence 3689999998 7787732111 11 13556667776666653 2345789998
No 27
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=41.87 E-value=65 Score=25.56 Aligned_cols=51 Identities=18% Similarity=0.061 Sum_probs=39.1
Q ss_pred eeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 7 AISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 7 ~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
+--+|++ |.|.|-+.. .|. .+-+-+..|+..|+..+- ..++++..|.|+.|
T Consensus 85 v~a~D~~-GhG~SdGl~--~yi-~~~d~~v~D~~~~~~~i~-~~~e~~~lp~FL~G 135 (313)
T KOG1455|consen 85 VYAIDYE-GHGRSDGLH--AYV-PSFDLVVDDVISFFDSIK-EREENKGLPRFLFG 135 (313)
T ss_pred EEEeecc-CCCcCCCCc--ccC-CcHHHHHHHHHHHHHHHh-hccccCCCCeeeee
Confidence 3446664 888887554 465 688889999998887663 47889999999999
No 28
>PRK05855 short chain dehydrogenase; Validated
Probab=41.50 E-value=91 Score=25.19 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=34.7
Q ss_pred ceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 4 MAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 4 ~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
..+++-+|.| |.|.|....... . .+.+..++++..+++.. - ..++++|.|
T Consensus 51 ~~~Vi~~D~~-G~G~S~~~~~~~-~-~~~~~~a~dl~~~i~~l---~---~~~~~~lvG 100 (582)
T PRK05855 51 RFRVVAYDVR-GAGRSSAPKRTA-A-YTLARLADDFAAVIDAV---S---PDRPVHLLA 100 (582)
T ss_pred ceEEEEecCC-CCCCCCCCCccc-c-cCHHHHHHHHHHHHHHh---C---CCCcEEEEe
Confidence 4578899999 789886433211 1 46778888988888753 1 135699999
No 29
>KOG3505 consensus Mitochondrial/chloroplast ribosomal protein L33-like [Translation, ribosomal structure and biogenesis]
Probab=37.73 E-value=12 Score=21.95 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=11.4
Q ss_pred EeCCCCcccccccCC
Q 037680 10 LECPAGMGLSYSNTK 24 (115)
Q Consensus 10 iDqPvGvGfSy~~~~ 24 (115)
+=+-+|+||+|..+.
T Consensus 13 lvStAgtGf~~~~s~ 27 (55)
T KOG3505|consen 13 LVSTAGTGFFYVKSR 27 (55)
T ss_pred HHHhcccceEEEEec
Confidence 345789999998654
No 30
>PLN02578 hydrolase
Probab=36.22 E-value=1e+02 Score=23.77 Aligned_cols=48 Identities=13% Similarity=-0.000 Sum_probs=31.9
Q ss_pred cceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 3 NMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 3 ~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
+..+++.+|.| |.|.|-... .. .+.+.-++++.+|++.. ...+++|.|
T Consensus 111 ~~~~v~~~D~~-G~G~S~~~~-~~---~~~~~~a~~l~~~i~~~-------~~~~~~lvG 158 (354)
T PLN02578 111 KKYKVYALDLL-GFGWSDKAL-IE---YDAMVWRDQVADFVKEV-------VKEPAVLVG 158 (354)
T ss_pred cCCEEEEECCC-CCCCCCCcc-cc---cCHHHHHHHHHHHHHHh-------ccCCeEEEE
Confidence 34689999999 777764321 11 35566677787777654 246789998
No 31
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=36.14 E-value=1.4e+02 Score=20.29 Aligned_cols=47 Identities=17% Similarity=0.046 Sum_probs=30.4
Q ss_pred ceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 4 MAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 4 ~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
..+++.+|.| |.|.|-... . ..+.+..++++.++++.+ ...++++.|
T Consensus 39 ~~~v~~~d~~-G~G~s~~~~---~-~~~~~~~~~~~~~~i~~~-------~~~~v~liG 85 (251)
T TIGR02427 39 DFRVLRYDKR-GHGLSDAPE---G-PYSIEDLADDVLALLDHL-------GIERAVFCG 85 (251)
T ss_pred ccEEEEecCC-CCCCCCCCC---C-CCCHHHHHHHHHHHHHHh-------CCCceEEEE
Confidence 4578889987 667763221 1 146677788887777643 234688988
No 32
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=35.39 E-value=1.2e+02 Score=20.46 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=27.8
Q ss_pred cceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 3 NMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 3 ~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
+..+++-+|.| |.|.|-... .....+.++.++++ +..+.++. ..+++.|.|
T Consensus 26 ~~~~v~~~d~~-g~G~s~~~~--~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~l~G 76 (251)
T TIGR03695 26 PHFRCLAIDLP-GHGSSQSPD--EIERYDFEEAAQDI---LATLLDQL---GIEPFFLVG 76 (251)
T ss_pred ccCeEEEEcCC-CCCCCCCCC--ccChhhHHHHHHHH---HHHHHHHc---CCCeEEEEE
Confidence 34678999988 777774321 11113445555552 22233332 346789998
No 33
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=34.26 E-value=1.2e+02 Score=23.33 Aligned_cols=56 Identities=13% Similarity=0.001 Sum_probs=36.3
Q ss_pred eeeeEEeCCCCcccccccCC-CCCCCCCcHHHHHHHHHHHHHHHhh--------CC--------CCC-CCcEEEEc
Q 037680 5 AYAISLECPAGMGLSYSNTK-SDYNPNADKSTAQDSYTFPISWLER--------LP--------QYK-TSFFNTLG 62 (115)
Q Consensus 5 an~lyiDqPvGvGfSy~~~~-~~~~~~~~~~~a~~~~~fL~~F~~~--------fP--------~~~-~~~~~i~G 62 (115)
..++-+|. .|.|-|-+... .+.. .+-+..++|+..+++..-+. ++ ++. ..|++|.|
T Consensus 75 ~~V~~~D~-rGHG~S~~~~~~~g~~-~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~G 148 (332)
T TIGR01607 75 YSVYGLDL-QGHGESDGLQNLRGHI-NCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIG 148 (332)
T ss_pred CcEEEecc-cccCCCccccccccch-hhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEee
Confidence 46677787 68888865422 2222 36777888999888866441 00 233 57899999
No 34
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=33.76 E-value=1.4e+02 Score=22.40 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=29.5
Q ss_pred ceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 4 MAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 4 ~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
..+++-+|.| |.|.|..... ... .+.++.+.++..+++. . ...++.+.|
T Consensus 53 ~~~vi~~D~~-G~G~S~~~~~-~~~-~~~~~~~~dl~~l~~~----l---~~~~~~lvG 101 (306)
T TIGR01249 53 TYRIVLFDQR-GCGKSTPHAC-LEE-NTTWDLVADIEKLREK----L---GIKNWLVFG 101 (306)
T ss_pred CCEEEEECCC-CCCCCCCCCC-ccc-CCHHHHHHHHHHHHHH----c---CCCCEEEEE
Confidence 4578999999 8888863321 111 3445566666555442 2 234688888
No 35
>KOG3411 consensus 40S ribosomal protein S19 [Translation, ribosomal structure and biogenesis]
Probab=33.66 E-value=22 Score=24.81 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=37.3
Q ss_pred eeEEeCCCCcccc---cccC------CCCCCCCCcHHHHHHHHHHHHH--HHhhCCCCCCCcEEEEchhh
Q 037680 7 AISLECPAGMGLS---YSNT------KSDYNPNADKSTAQDSYTFPIS--WLERLPQYKTSFFNTLGVTH 65 (115)
Q Consensus 7 ~lyiDqPvGvGfS---y~~~------~~~~~~~~~~~~a~~~~~fL~~--F~~~fP~~~~~~~~i~G~~I 65 (115)
=||+-.|+|||+= |+.. ++.+. .+..+.++.+++.|+. |.+++|.= .|.+-=-|+++
T Consensus 63 hiylR~~~gvg~~~KiYGg~krrGvrPsh~~-~as~~i~rkvlQ~Le~~~~ve~hp~g-GR~lt~~Gqrd 130 (143)
T KOG3411|consen 63 HIYLRGPVGVGALTKIYGGSKRRGVRPSHFC-DASGGIARKVLQALEKMGIVEKHPKG-GRRLTEQGQRD 130 (143)
T ss_pred HHHhccccchhHHHHHhcccccCCCCChhhh-ccccHHHHHHHHHHHhCCceeeCCCC-cceeCcccchh
Confidence 3899999999963 2222 12334 5777899999999987 78888865 34333334333
No 36
>PRK10749 lysophospholipase L2; Provisional
Probab=31.18 E-value=2.1e+02 Score=21.74 Aligned_cols=54 Identities=11% Similarity=-0.101 Sum_probs=34.7
Q ss_pred ceeeeEEeCCCCcccccccCCC---CCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 4 MAYAISLECPAGMGLSYSNTKS---DYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 4 ~an~lyiDqPvGvGfSy~~~~~---~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
..+++-+|.| |.|-|-..... +.. .+-+..++++..+++...+.. ...++++.|
T Consensus 81 g~~v~~~D~~-G~G~S~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~---~~~~~~l~G 137 (330)
T PRK10749 81 GYDVLIIDHR-GQGRSGRLLDDPHRGHV-ERFNDYVDDLAAFWQQEIQPG---PYRKRYALA 137 (330)
T ss_pred CCeEEEEcCC-CCCCCCCCCCCCCcCcc-ccHHHHHHHHHHHHHHHHhcC---CCCCeEEEE
Confidence 3578889988 78887532111 111 255677778888887665443 356899999
No 37
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=30.80 E-value=51 Score=16.73 Aligned_cols=14 Identities=7% Similarity=-0.137 Sum_probs=12.2
Q ss_pred cCCCCHHHHHHHHh
Q 037680 95 HAFNSDQTHKGLFT 108 (115)
Q Consensus 95 ~gli~~~~~~~~~~ 108 (115)
.|+|+++.|+..++
T Consensus 14 ~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 14 KGEISEEEYEQKKA 27 (31)
T ss_pred cCCCCHHHHHHHHH
Confidence 79999999988765
No 38
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=29.70 E-value=2e+02 Score=20.96 Aligned_cols=48 Identities=17% Similarity=0.116 Sum_probs=31.1
Q ss_pred cceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 3 NMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 3 ~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
+..+++-+|.| |.|.|-.. .. . .+-+..++++.+++... ..+++++.|
T Consensus 50 ~~~~vi~~Dl~-G~G~S~~~-~~--~-~~~~~~~~~~~~~i~~l-------~~~~~~LvG 97 (276)
T TIGR02240 50 PDLEVIAFDVP-GVGGSSTP-RH--P-YRFPGLAKLAARMLDYL-------DYGQVNAIG 97 (276)
T ss_pred cCceEEEECCC-CCCCCCCC-CC--c-CcHHHHHHHHHHHHHHh-------CcCceEEEE
Confidence 45689999987 66877422 11 1 35556677777766653 335799999
No 39
>PRK10349 carboxylesterase BioH; Provisional
Probab=29.45 E-value=1.3e+02 Score=21.45 Aligned_cols=43 Identities=16% Similarity=0.037 Sum_probs=27.1
Q ss_pred cceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 3 NMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 3 ~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
+..+++.+|.| |.|.|-.. .. .+-++.++++.+ +...++++.|
T Consensus 38 ~~~~vi~~Dl~-G~G~S~~~--~~---~~~~~~~~~l~~-----------~~~~~~~lvG 80 (256)
T PRK10349 38 SHFTLHLVDLP-GFGRSRGF--GA---LSLADMAEAVLQ-----------QAPDKAIWLG 80 (256)
T ss_pred cCCEEEEecCC-CCCCCCCC--CC---CCHHHHHHHHHh-----------cCCCCeEEEE
Confidence 45689999999 88888532 11 344555555442 2235788898
No 40
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=28.72 E-value=1.3e+02 Score=21.80 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=30.3
Q ss_pred CCcceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHH-HHHHHHHHHhhCCCC
Q 037680 1 MMNMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQD-SYTFPISWLERLPQY 53 (115)
Q Consensus 1 ~n~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~-~~~fL~~F~~~fP~~ 53 (115)
|.-.|-||-||- |-+-...|+.+ |=-+++++ +..|+.+||++.|+=
T Consensus 1 m~~ea~vi~lD~------S~sM~a~D~~P-nRL~aak~~i~~~~~~f~~~np~~ 47 (187)
T cd01452 1 MVLEATMICIDN------SEYMRNGDYPP-TRFQAQADAVNLICQAKTRSNPEN 47 (187)
T ss_pred CCceEEEEEEEC------CHHHHcCCCCC-CHHHHHHHHHHHHHHHHHhcCCCc
Confidence 666778888885 44434456664 44445554 556778999999975
No 41
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=28.64 E-value=2.4e+02 Score=20.89 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=33.5
Q ss_pred eeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 5 AYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 5 an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
.+++-+|.| |.|-|-... .+-+...+|+.++++.+-+..|.+ .++.+.|
T Consensus 58 ~~v~~~Dl~-G~G~S~~~~------~~~~~~~~d~~~~~~~l~~~~~g~--~~i~l~G 106 (274)
T TIGR03100 58 FPVLRFDYR-GMGDSEGEN------LGFEGIDADIAAAIDAFREAAPHL--RRIVAWG 106 (274)
T ss_pred CEEEEeCCC-CCCCCCCCC------CCHHHHHHHHHHHHHHHHhhCCCC--CcEEEEE
Confidence 578999998 888764321 244456778888887766666655 3588888
No 42
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=27.90 E-value=1.9e+02 Score=23.29 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=31.3
Q ss_pred eeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 5 AYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 5 an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
.++|-+|.| |.|.|-... .. .+... ....+..++...|.....++.+.|
T Consensus 223 y~vl~~D~p-G~G~s~~~~---~~-~d~~~----~~~avld~l~~~~~vd~~ri~l~G 271 (414)
T PRK05077 223 IAMLTIDMP-SVGFSSKWK---LT-QDSSL----LHQAVLNALPNVPWVDHTRVAAFG 271 (414)
T ss_pred CEEEEECCC-CCCCCCCCC---cc-ccHHH----HHHHHHHHHHhCcccCcccEEEEE
Confidence 589999999 999884321 11 11111 223444566677777777899999
No 43
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=27.06 E-value=1.3e+02 Score=22.37 Aligned_cols=28 Identities=14% Similarity=-0.007 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 33 KSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 33 ~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
+-+-.|+.++.+.|++.++ .+|||.|+|
T Consensus 74 ~~ay~DV~~AF~~yL~~~n--~GRPfILaG 101 (207)
T PF11288_consen 74 DLAYSDVRAAFDYYLANYN--NGRPFILAG 101 (207)
T ss_pred HhhHHHHHHHHHHHHHhcC--CCCCEEEEE
Confidence 3456788899999999875 468999999
No 44
>smart00250 PLEC Plectin repeat.
Probab=26.33 E-value=28 Score=18.33 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=16.6
Q ss_pred CccCccccccchhhhhhhcCCccCCCCHH
Q 037680 73 AWVDDATGATDLFEHRWTTGLMHAFNSDQ 101 (115)
Q Consensus 73 g~~d~~~~~~~~~~~~~~~~~~~gli~~~ 101 (115)
|.+||...-.-...=|.. .|+|+++
T Consensus 12 Giidp~t~~~lsv~eA~~----~glid~~ 36 (38)
T smart00250 12 GIIDPETGQKLSVEEALR----RGLIDPE 36 (38)
T ss_pred EEEcCCCCCCcCHHHHHH----cCCCCcc
Confidence 777887655545555667 7887764
No 45
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=26.28 E-value=2.6e+02 Score=23.11 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=34.6
Q ss_pred ceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 4 MAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 4 ~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
..|+|-+|-|-+..-.|... . .+...+|.++.++|+...+..- +.-.++++.|
T Consensus 73 d~nVI~VDw~g~g~s~y~~a----~-~~t~~vg~~la~lI~~L~~~~g-l~l~~VhLIG 125 (442)
T TIGR03230 73 SANVIVVDWLSRAQQHYPTS----A-AYTKLVGKDVAKFVNWMQEEFN-YPWDNVHLLG 125 (442)
T ss_pred CCEEEEEECCCcCCCCCccc----c-ccHHHHHHHHHHHHHHHHHhhC-CCCCcEEEEE
Confidence 47999999986543223211 1 3456788888888876544332 5556899999
No 46
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=26.10 E-value=1.9e+02 Score=20.88 Aligned_cols=33 Identities=6% Similarity=0.070 Sum_probs=27.1
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCCCCC-CcEEEEc
Q 037680 30 NADKSTAQDSYTFPISWLERLPQYKT-SFFNTLG 62 (115)
Q Consensus 30 ~~~~~~a~~~~~fL~~F~~~fP~~~~-~~~~i~G 62 (115)
++-..+.+.+.+-++.||+.++.++. +-..+.|
T Consensus 118 ~di~d~~~~~~~~i~~ffe~yK~le~~k~~~~~g 151 (171)
T COG0221 118 KDISDLPEHLLDEIQHFFETYKDLEKGKWVKVEG 151 (171)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCCcEEEecc
Confidence 56777889999999999999999987 4566665
No 47
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=25.99 E-value=1.5e+02 Score=20.11 Aligned_cols=48 Identities=21% Similarity=0.156 Sum_probs=25.7
Q ss_pred eeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 7 AISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 7 ~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
++-+|+| |.|+|...... ....-...++.+.+..+.++.+. +++++.|
T Consensus 3 vi~~d~r-G~g~S~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~---~~~~~vG 50 (230)
T PF00561_consen 3 VILFDLR-GFGYSSPHWDP----DFPDYTTDDLAADLEALREALGI---KKINLVG 50 (230)
T ss_dssp EEEEECT-TSTTSSSCCGS----GSCTHCHHHHHHHHHHHHHHHTT---SSEEEEE
T ss_pred EEEEeCC-CCCCCCCCccC----CcccccHHHHHHHHHHHHHHhCC---CCeEEEE
Confidence 4555654 88888730000 12333445555555555555443 3399999
No 48
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=24.49 E-value=47 Score=22.22 Aligned_cols=15 Identities=27% Similarity=0.186 Sum_probs=13.8
Q ss_pred eeeeEEeCCCCccccc
Q 037680 5 AYAISLECPAGMGLSY 20 (115)
Q Consensus 5 an~lyiDqPvGvGfSy 20 (115)
.+++.+|+| |.|.|.
T Consensus 51 ~~~~~~d~~-g~g~s~ 65 (282)
T COG0596 51 YRVIAPDLR-GHGRSD 65 (282)
T ss_pred eEEEEeccc-CCCCCC
Confidence 589999999 999997
No 49
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=23.72 E-value=1.2e+02 Score=22.86 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=33.0
Q ss_pred ceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 4 MAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 4 ~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
..|++.+|-+.+..-.|... ..+...+++++.++|+...+.. .....++++.|
T Consensus 66 ~~nVi~vD~~~~~~~~y~~a-----~~~~~~v~~~la~~l~~L~~~~-g~~~~~i~lIG 118 (275)
T cd00707 66 DYNVIVVDWGRGANPNYPQA-----VNNTRVVGAELAKFLDFLVDNT-GLSLENVHLIG 118 (275)
T ss_pred CCEEEEEECccccccChHHH-----HHhHHHHHHHHHHHHHHHHHhc-CCChHHEEEEE
Confidence 47999999886522222111 1345567777777777765543 23446799999
No 50
>PF11943 DUF3460: Protein of unknown function (DUF3460); InterPro: IPR021853 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.
Probab=23.68 E-value=69 Score=19.22 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhCCCCC
Q 037680 38 DSYTFPISWLERLPQYK 54 (115)
Q Consensus 38 ~~~~fL~~F~~~fP~~~ 54 (115)
++-.||.++.+++|++.
T Consensus 6 e~TqFl~~lk~~~Pele 22 (60)
T PF11943_consen 6 EITQFLNQLKAKHPELE 22 (60)
T ss_pred HHHHHHHHHHHhCCchH
Confidence 45679999999999984
No 51
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=23.25 E-value=46 Score=18.74 Aligned_cols=12 Identities=42% Similarity=0.864 Sum_probs=8.8
Q ss_pred HHHHHhhCCCCC
Q 037680 43 PISWLERLPQYK 54 (115)
Q Consensus 43 L~~F~~~fP~~~ 54 (115)
|..|++.+|.|.
T Consensus 30 L~~WL~~~P~y~ 41 (46)
T PF07533_consen 30 LEEWLEEHPGYE 41 (46)
T ss_dssp HHHHHHH-TTEE
T ss_pred HHHHHHHCcCce
Confidence 678889999873
No 52
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=23.24 E-value=1.1e+02 Score=21.63 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=23.6
Q ss_pred EEeCC-CCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhC
Q 037680 9 SLECP-AGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERL 50 (115)
Q Consensus 9 yiDqP-vGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~f 50 (115)
+..-| ++.||.-.... .-+..++++.|+-+..||+++
T Consensus 180 ~~~y~ga~HgF~~~~~~-----~~~~~aa~~a~~~~~~ff~~~ 217 (218)
T PF01738_consen 180 VHVYPGAGHGFANPSRP-----PYDPAAAEDAWQRTLAFFKRH 217 (218)
T ss_dssp EEEETT--TTTTSTTST-----T--HHHHHHHHHHHHHHHCC-
T ss_pred EEECCCCcccccCCCCc-----ccCHHHHHHHHHHHHHHHHhc
Confidence 34446 78888754432 367789999999999999864
No 53
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=23.13 E-value=1.8e+02 Score=23.58 Aligned_cols=52 Identities=12% Similarity=0.228 Sum_probs=33.9
Q ss_pred cceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 3 NMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 3 ~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
+.-|+..||.| |-|.|- .+. .. .+.+.+-+.+.+-+++|.+..- -....|.|
T Consensus 115 ~~~~vyaiDll-G~G~SS-RP~--F~-~d~~~~e~~fvesiE~WR~~~~---L~KmilvG 166 (365)
T KOG4409|consen 115 KIRNVYAIDLL-GFGRSS-RPK--FS-IDPTTAEKEFVESIEQWRKKMG---LEKMILVG 166 (365)
T ss_pred hcCceEEeccc-CCCCCC-CCC--CC-CCcccchHHHHHHHHHHHHHcC---CcceeEee
Confidence 35688899987 667763 222 22 3444455578888899987543 23678888
No 54
>PF12638 Staygreen: Staygreen protein; InterPro: IPR024438 This domain is found in a family of proteins have been implicated in chlorophyll degradation [, ]. Intriguingly members of this family are also found in non-photosynthetic bacteria.
Probab=22.21 E-value=64 Score=22.90 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=15.4
Q ss_pred HHHHhhCCCCCCCcEEEE
Q 037680 44 ISWLERLPQYKTSFFNTL 61 (115)
Q Consensus 44 ~~F~~~fP~~~~~~~~i~ 61 (115)
..||+.+|++...+++|-
T Consensus 113 ~~lf~~~P~L~~a~I~V~ 130 (151)
T PF12638_consen 113 RSLFAEHPELDDAPIWVH 130 (151)
T ss_pred HHHHHhChhhcCCCEEEE
Confidence 468999999999998874
No 55
>PF14176 YxiJ: YxiJ-like protein
Probab=22.10 E-value=42 Score=22.54 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=10.3
Q ss_pred HHHHHHhhCCCCC
Q 037680 42 FPISWLERLPQYK 54 (115)
Q Consensus 42 fL~~F~~~fP~~~ 54 (115)
.=+.||+.+|+|+
T Consensus 68 L~ksFfe~yPqy~ 80 (108)
T PF14176_consen 68 LYKSFFEWYPQYR 80 (108)
T ss_pred HHHHHHHHCchHh
Confidence 3356999999996
No 56
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=21.89 E-value=2.6e+02 Score=21.01 Aligned_cols=32 Identities=6% Similarity=0.004 Sum_probs=26.0
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 30 NADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 30 ~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
.+-++.-+.-++||+++....+ -.+.++++.|
T Consensus 59 ~sL~~QI~hk~~~i~~~~~~~~-~~~~~liLiG 90 (266)
T PF10230_consen 59 FSLQDQIEHKIDFIKELIPQKN-KPNVKLILIG 90 (266)
T ss_pred cCHHHHHHHHHHHHHHHhhhhc-CCCCcEEEEe
Confidence 6888888899999998887655 2466899999
No 57
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=21.87 E-value=2.4e+02 Score=22.44 Aligned_cols=33 Identities=12% Similarity=0.014 Sum_probs=26.7
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 30 NADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 30 ~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
-+.+++-.|+..|++.+-+++....+.|+.+.|
T Consensus 87 Lt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~G 119 (434)
T PF05577_consen 87 LTSEQALADLAYFIRYVKKKYNTAPNSPWIVFG 119 (434)
T ss_dssp -SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEC
Confidence 389999999999999998788777778999998
No 58
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=21.86 E-value=82 Score=23.09 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=22.4
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhhCCCC
Q 037680 24 KSDYNPNADKSTAQDSYTFPISWLERLPQY 53 (115)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~ 53 (115)
+.|+.++--.-+-+.+-.|+++||.+.|.=
T Consensus 10 ~~D~~PtRl~~~~~~l~~Fv~eff~qNPiS 39 (193)
T PF04056_consen 10 EKDLKPTRLQCVLKALEEFVREFFDQNPIS 39 (193)
T ss_pred hCcCCccHHHHHHHHHHHHHHHHHhcCChh
Confidence 345555556667777889999999999954
No 59
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=21.77 E-value=2.1e+02 Score=22.84 Aligned_cols=52 Identities=12% Similarity=-0.035 Sum_probs=32.1
Q ss_pred cceeeeEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 037680 3 NMAYAISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG 62 (115)
Q Consensus 3 ~~an~lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G 62 (115)
+..+++-+|.| |.|.|-..........+-+..++++.++++.. ...+++|.|
T Consensus 152 ~~~~Via~Dlp-G~G~S~~p~~~~~~~ys~~~~a~~l~~~i~~l-------~~~~~~LvG 203 (383)
T PLN03084 152 KNYHAIAFDWL-GFGFSDKPQPGYGFNYTLDEYVSSLESLIDEL-------KSDKVSLVV 203 (383)
T ss_pred cCCEEEEECCC-CCCCCCCCcccccccCCHHHHHHHHHHHHHHh-------CCCCceEEE
Confidence 34688999988 77887543211001136667788888777654 234677776
No 60
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=21.46 E-value=3e+02 Score=19.32 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=42.3
Q ss_pred eEEeCCCCcccccccCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCCcEEEEc-------------------hhhhhh
Q 037680 8 ISLECPAGMGLSYSNTKSDYNPNADKSTAQDSYTFPISWLERLPQYKTSFFNTLG-------------------VTHLYF 68 (115)
Q Consensus 8 lyiDqPvGvGfSy~~~~~~~~~~~~~~~a~~~~~fL~~F~~~fP~~~~~~~~i~G-------------------~~I~~i 68 (115)
..+..+..+.|..... +-...++....-+-.+++++| ...+-|.| +.+.+.
T Consensus 77 ~~~~~~~~v~F~~ds~-------~l~p~~~~~L~~~a~~L~~~p---~~~i~V~GHTD~~Gs~~yN~~LS~rRA~aV~~~ 146 (190)
T COG2885 77 IILNLPNDVLFDFDSS-------VLKPKAQATLDELAKYLKKNP---ITRILVEGHTDSTGSDEYNQALSERRAEAVADY 146 (190)
T ss_pred eEEecCCceEecCCcc-------ccCHhHHHHHHHHHHHHHhCC---CcEEEEEecCCCCCCHHHhHHHHHHHHHHHHHH
Confidence 4455566666654332 223366777777777888888 56788998 222337
Q ss_pred hccCCccCccccccchh
Q 037680 69 RRGNAWVDDATGATDLF 85 (115)
Q Consensus 69 ~IGNg~~d~~~~~~~~~ 85 (115)
++..|.....+...+|.
T Consensus 147 L~~~Gv~~~~i~~~G~G 163 (190)
T COG2885 147 LVSQGVVADRISTVGYG 163 (190)
T ss_pred HHHcCCCcccEEEEEcC
Confidence 77777777666555543
Done!