BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037682
MVDVDRRMTGLNPAHIAGLRRLSARAAAPTTATSLPVRNGLVSFSSLADKVITHLKNSGI
RVQPGLSDAEFARAEAEFGFVFPPDLRAILSAGLPLGPGFPDWRATGSARLHLRASLDLP
IAAITFQIARNALWSKSWGPRPSDPEKALRVARNALKRAPLLIPIFNHCYIPCNPTLAGN
PIFYVDENRIFCCGLDLSDFFERESLFRSTESDPQVLIKQRSVSERTAGSSSNFSRRSLD
AGLGSRTPRWVEFWSDAAIDRRRRNSSSSSSSSPERFFDMPRSEIPKWVDDYMGQIGSVL
REGGWSEPDIVEIVTVSASGFFEGEMVMLDNQSVLDGLLLKADRLSESLRKSGWSSEEVS
DAFGFDFRPEKERKPAKKLSPELVERIGKLAESVSRS

High Scoring Gene Products

Symbol, full name Information P value
AT3G50340 protein from Arabidopsis thaliana 1.9e-147
AT5G67020 protein from Arabidopsis thaliana 5.6e-139
AT2G22790 protein from Arabidopsis thaliana 2.2e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037682
        (397 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2074870 - symbol:AT3G50340 "AT3G50340" species...  1440  1.9e-147  1
TAIR|locus:2158128 - symbol:AT5G67020 "AT5G67020" species...  1360  5.6e-139  1
TAIR|locus:2062245 - symbol:AT2G22790 "AT2G22790" species...   264  2.2e-27   2


>TAIR|locus:2074870 [details] [associations]
            symbol:AT3G50340 "AT3G50340" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL132976
            eggNOG:NOG136919 HOGENOM:HOG000029619 ProtClustDB:CLSN2684407
            EMBL:BT004629 EMBL:AK227554 IPI:IPI00520173 PIR:T45580
            RefSeq:NP_190603.1 UniGene:At.1431 STRING:Q9SND3 PaxDb:Q9SND3
            PRIDE:Q9SND3 EnsemblPlants:AT3G50340.1 GeneID:824196
            KEGG:ath:AT3G50340 TAIR:At3g50340 InParanoid:Q9SND3 OMA:LDLRRCK
            PhylomeDB:Q9SND3 Genevestigator:Q9SND3 Uniprot:Q9SND3
        Length = 403

 Score = 1440 (512.0 bits), Expect = 1.9e-147, P = 1.9e-147
 Identities = 284/407 (69%), Positives = 319/407 (78%)

Query:     1 MVDVDRRMTGLNPAHIAGXXXXXXXXXXXXXXXXXXVRNGLVSFSSLADKVITHLKNSGI 60
             MVDVDRRMTGL PAH AG                  VRN LVSFSSLAD+VI+HL  S I
Sbjct:     1 MVDVDRRMTGLRPAHAAGLRRLSARAAAPTTPT---VRNSLVSFSSLADQVISHLHTSRI 57

Query:    61 RVQPGLSDXXXXXXXXXXXXXXPPDLRAILSAGLPLGPGFPDWRATGSARLHLRASLDLP 120
             +VQPGL+D              PPDLRA+L+AGLP+G GFPDWR+ G ARLHLRA +DLP
Sbjct:    58 QVQPGLTDSEFARAEAEFAFAFPPDLRAVLTAGLPVGAGFPDWRSPG-ARLHLRAMIDLP 116

Query:   121 IAAITFQIARNALWSKSWGPRPSDPEKALRVARNALKRAPLLIPIFNHCYIPCNPTLAGN 180
             IAA++FQIARN LWSKSWG RPSDPEKALRVARNALKRAPL+IPIF+HCYIPCNP+LAGN
Sbjct:   117 IAAVSFQIARNTLWSKSWGLRPSDPEKALRVARNALKRAPLMIPIFDHCYIPCNPSLAGN 176

Query:   181 PIFYVDENRIFCCGLDLSDFFERESLFRSTESDPQVLIKQRSVSERTAGSSS----NFSR 236
             P+FY+DE RIFCCG DLSDFFERES+FR +++ P VL KQRSVSE++AGSSS    NFSR
Sbjct:   177 PVFYIDETRIFCCGSDLSDFFERESVFRGSDTCPVVLTKQRSVSEKSAGSSSSSSSNFSR 236

Query:   237 RSLDAGL--GSRTPRWVEFWSDAAIDX----XXXXXXXXXXXXPERFFDMPRSEIPKWVD 290
              SLD+G   GS TPRWVEFWSDAA+D                 PER+ D+PRSE PKWVD
Sbjct:   237 MSLDSGRVHGSSTPRWVEFWSDAAVDRRRRNSASSMSSSHSSSPERYLDLPRSETPKWVD 296

Query:   291 DYMGQIGSVLREGGWSEPDIVEIVTVSASGFFEGEMVMLDNQSVLDGLLLKADRLSESLR 350
             DY+ +IGSVLR GGWSE D+ +IV VSASGFFEGEMV+LDNQ+VLD LLLKA R SESLR
Sbjct:   297 DYVNRIGSVLRGGGWSESDVDDIVHVSASGFFEGEMVILDNQAVLDALLLKAGRFSESLR 356

Query:   351 KSGWSSEEVSDAFGFDFRPEKERKPAKKLSPELVERIGKLAESVSRS 397
             K+GWSSEEVSDA GFDFRPEKE+KP KKLSPELV+RIGKLAESVSRS
Sbjct:   357 KAGWSSEEVSDALGFDFRPEKEKKPVKKLSPELVQRIGKLAESVSRS 403


>TAIR|locus:2158128 [details] [associations]
            symbol:AT5G67020 "AT5G67020" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB026640
            EMBL:BT029193 IPI:IPI00544315 RefSeq:NP_201503.1 UniGene:At.50563
            PRIDE:Q9FGC8 EnsemblPlants:AT5G67020.1 GeneID:836837
            KEGG:ath:AT5G67020 TAIR:At5g67020 eggNOG:NOG136919
            HOGENOM:HOG000029619 InParanoid:Q9FGC8 OMA:FGFTFPP PhylomeDB:Q9FGC8
            ProtClustDB:CLSN2684407 Genevestigator:Q9FGC8 Uniprot:Q9FGC8
        Length = 394

 Score = 1360 (483.8 bits), Expect = 5.6e-139, P = 5.6e-139
 Identities = 267/399 (66%), Positives = 305/399 (76%)

Query:     1 MVDVDRRMTGLNPAHIAGXXXXXXXXXXXXXXXXXXVRNGLVSFSSLADKVITHLKNSGI 60
             MVDVDRRMTGL PAH AG                  +RN L SFS  ADKVI HLKNSGI
Sbjct:     1 MVDVDRRMTGLTPAHAAGLRRLSARAAAPSTPT---IRNSLQSFSPFADKVINHLKNSGI 57

Query:    61 RVQPGLSDXXXXXXXXXXXXXXPPDLRAILSAGLPLGPGFPDWRATGSARLHLRASLDLP 120
             ++QPGLSD              PPDLR ILSAGL +G GFPDWR+ G ARLHLRA +DLP
Sbjct:    58 KIQPGLSDTEFARVEAEFGFTFPPDLRVILSAGLSVGAGFPDWRSPG-ARLHLRAMIDLP 116

Query:   121 IAAITFQIARNALWSKSWGPRPSDPEKALRVARNALKRAPLLIPIFNHCYIPCNPTLAGN 180
             +AA++FQIA+N+LW KSWG +P DPEKALRVARNALKRAPLLIPIF+HCYIPCNP+LAGN
Sbjct:   117 VAAVSFQIAKNSLWCKSWGLKPPDPEKALRVARNALKRAPLLIPIFDHCYIPCNPSLAGN 176

Query:   181 PIFYVDENRIFCCGLDLSDFFERESLFRSTESDPQVLIKQRSVSERTAGSSSNFSRRSLD 240
             P+F++DE RIFCCG DLS+FFERES FRS+E  P++L KQRSVSE++AGSSSNFSRRSLD
Sbjct:   177 PVFFIDETRIFCCGSDLSEFFERESAFRSSEFFPRILTKQRSVSEKSAGSSSNFSRRSLD 236

Query:   241 AGL--GSRTPRWVEFWSDAAIDXXXXXXXXXXXXXPERFFDMPRSEIPKWVDDYMGQIGS 298
              G   G+   RWVEFWSDAA+D                  D+P++E PKWV+ Y+ +IGS
Sbjct:   237 LGRANGAGKSRWVEFWSDAAVDRCRRNSASTSSSSSSSP-DLPKTETPKWVNQYVNRIGS 295

Query:   299 VLREGGWSEPDIVEIVTVSASGFFEGEMVMLDNQSVLDGLLLKADRLSESLRKSGWSSEE 358
             VLR GGWSE DI EI+ VSASGFFEGEMV++DNQ+VLD LLLKA R+SESLRKSGWSSEE
Sbjct:   296 VLRRGGWSESDIDEIIHVSASGFFEGEMVIIDNQTVLDVLLLKAGRISESLRKSGWSSEE 355

Query:   359 VSDAFGFDFRPEKERKPAKKLSPELVERIGKLAESVSRS 397
             VSDA GFDFRPEKERKP KKLSP LVE+  KLAE VS+S
Sbjct:   356 VSDALGFDFRPEKERKPVKKLSPMLVEQFEKLAEWVSQS 394


>TAIR|locus:2062245 [details] [associations]
            symbol:AT2G22790 "AT2G22790" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:AC005617 EMBL:CP002685 EMBL:DQ446551
            IPI:IPI00526130 PIR:H84616 RefSeq:NP_179864.1 UniGene:At.52870
            EnsemblPlants:AT2G22790.1 GeneID:816809 KEGG:ath:AT2G22790
            TAIR:At2g22790 InParanoid:O82400 OMA:ISPLGHI PhylomeDB:O82400
            ProtClustDB:CLSN2913286 Genevestigator:O82400 Uniprot:O82400
        Length = 325

 Score = 264 (98.0 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
 Identities = 54/154 (35%), Positives = 85/154 (55%)

Query:    51 VITHLKN-SGIRVQPGLSDXXXXXXXXXXXXXXPPDLRAILSAGLPLGPGFPDWRATGSA 109
             ++ H K+ +G  V PGL++              P DLR+IL  GLP+G  FP+WR TGS 
Sbjct:    36 IVNHFKSQTGNHVSPGLTNQEISAVESSHGFSFPLDLRSILQTGLPVGTNFPNWR-TGSN 94

Query:   110 RLHLRASLDLPIAAITFQIARNALWSKSWGPRPSDPEKALRVARNALKRAPLLIPIFNHC 169
             R +L     LP+  ++  + RN  W  SWG RP +  +AL + +  ++ AP+L+P++   
Sbjct:    95 RNNLL----LPLLNLSQHVVRNGFWVDSWGIRPGNDAEALSLVKKLIEIAPVLVPVYGDF 150

Query:   170 YIPCN-PTLAGNPIFYVDENRIFCCGLDLSDFFE 202
             Y+P   P LAGNP+F +D + +     D+  F +
Sbjct:   151 YVPSTTPNLAGNPVFQIDGDGVRELSCDVVGFLK 184

 Score = 58 (25.5 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
 Identities = 19/73 (26%), Positives = 32/73 (43%)

Query:   246 RTPRWVEFWSDAAIDXXXXXXXXXXXXXPERFFDMPRSEIPKWVDDYMGQIGSVLREGGW 305
             R PR VEFWSD A                + +  +    +   +DD   +    LRE GW
Sbjct:   200 RRPRRVEFWSDVA---EGWRFVVARDYTRDWWSALGFEGLTACLDDAFWK----LREAGW 252

Query:   306 SEPDIVEIVTVSA 318
             +E D+ +++ + +
Sbjct:   253 TEDDVRDMMMMDS 265

 Score = 48 (22.0 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query:   336 DGLLLKADRLSESLRKSGWSSEEVSDAFGFD 366
             +GL    D     LR++GW+ ++V D    D
Sbjct:   234 EGLTACLDDAFWKLREAGWTEDDVRDMMMMD 264


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      397       352   0.00078  117 3  11 22  0.40    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  233 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.37u 0.12s 26.49t   Elapsed:  00:00:01
  Total cpu time:  26.37u 0.12s 26.49t   Elapsed:  00:00:01
  Start:  Thu May  9 18:33:50 2013   End:  Thu May  9 18:33:51 2013

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