Query 037682
Match_columns 397
No_of_seqs 75 out of 77
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 05:00:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pag_A Hypothetical protein; n 97.2 0.00044 1.5E-08 59.5 5.4 43 50-93 3-49 (135)
2 2icg_A LIN2918 protein; hypoth 96.9 0.0013 4.5E-08 56.5 5.9 46 47-92 6-53 (160)
3 2prv_A Uncharacterized protein 96.8 0.0016 5.5E-08 55.9 5.5 43 49-92 8-50 (153)
4 3d5p_A Putative glucan synthes 96.3 0.0025 8.7E-08 54.3 4.0 110 60-205 9-127 (144)
5 3mva_O Transcription terminati 52.0 14 0.00049 35.1 4.7 59 290-362 237-295 (343)
6 2pfx_A Uncharacterized peroxid 47.1 35 0.0012 29.5 6.0 66 291-363 88-162 (191)
7 3c1l_A Putative antioxidant de 42.2 38 0.0013 29.1 5.4 66 291-363 85-159 (188)
8 1neq_A DNA-binding protein NER 41.0 15 0.00051 28.0 2.4 28 340-367 9-36 (74)
9 2prr_A Alkylhydroperoxidase AH 40.8 64 0.0022 28.0 6.7 69 291-363 89-163 (197)
10 3o9x_A Uncharacterized HTH-typ 37.1 42 0.0014 27.1 4.7 40 332-371 56-102 (133)
11 3omt_A Uncharacterized protein 35.4 17 0.00059 26.0 1.9 46 343-389 11-58 (73)
12 3kz3_A Repressor protein CI; f 35.2 26 0.00089 25.7 2.9 47 343-389 15-62 (80)
13 3f6w_A XRE-family like protein 35.0 29 0.00098 25.3 3.1 47 343-389 17-64 (83)
14 3oq9_A Tumor necrosis factor r 34.7 32 0.0011 27.7 3.5 28 65-92 23-50 (86)
15 1y7y_A C.AHDI; helix-turn-heli 34.2 30 0.001 24.3 2.9 46 342-388 15-62 (74)
16 2oyo_A Uncharacterized peroxid 33.8 66 0.0022 27.9 5.7 66 291-363 93-167 (196)
17 1ich_A TNF-1, tumor necrosis f 33.8 23 0.00079 30.0 2.6 27 65-91 36-62 (112)
18 1qtn_B Caspase-8; apoptosis, d 33.6 15 0.0005 29.5 1.3 37 276-315 24-60 (95)
19 1uxc_A FRUR (1-57), fructose r 33.6 15 0.0005 27.6 1.2 41 347-394 5-45 (65)
20 2e5z_A SFRS8 protein, splicing 32.7 12 0.00041 30.6 0.7 20 377-396 18-37 (90)
21 1u78_A TC3 transposase, transp 32.7 80 0.0028 24.8 5.6 42 349-390 18-72 (141)
22 3t76_A VANU, transcriptional r 32.3 26 0.0009 27.4 2.6 46 342-389 26-73 (88)
23 1vz0_A PARB, chromosome partit 32.3 13 0.00044 34.1 0.9 41 349-389 130-170 (230)
24 2o38_A Hypothetical protein; a 32.2 49 0.0017 27.1 4.4 46 342-387 42-89 (120)
25 1adr_A P22 C2 repressor; trans 32.2 35 0.0012 24.1 3.1 46 343-388 8-54 (76)
26 3oou_A LIN2118 protein; protei 31.4 46 0.0016 25.8 3.9 76 287-366 5-83 (108)
27 2r1j_L Repressor protein C2; p 31.3 34 0.0012 23.5 2.8 45 343-387 8-53 (68)
28 2ay0_A Bifunctional PUTA prote 31.3 25 0.00086 25.9 2.2 22 376-397 7-28 (58)
29 2xi8_A Putative transcription 30.9 23 0.0008 24.2 1.9 44 345-388 6-50 (66)
30 3oio_A Transcriptional regulat 30.3 28 0.00097 27.3 2.5 76 287-366 7-85 (113)
31 2ewt_A BLDD, putative DNA-bind 30.1 87 0.003 21.8 4.9 23 343-365 11-33 (71)
32 3lsg_A Two-component response 29.9 51 0.0018 25.2 3.9 71 293-366 8-81 (103)
33 3b7h_A Prophage LP1 protein 11 29.5 50 0.0017 23.5 3.5 46 343-388 10-57 (78)
34 2b5a_A C.BCLI; helix-turn-heli 29.1 40 0.0014 23.9 2.9 45 343-387 13-58 (77)
35 1x4o_A Splicing factor 4; stru 28.1 29 0.00098 27.2 2.1 15 382-396 16-30 (78)
36 3mva_O Transcription terminati 27.9 1.1E+02 0.0038 29.0 6.6 64 292-364 198-262 (343)
37 2kci_A Putative acyl carrier p 27.5 26 0.00088 27.7 1.8 15 71-85 43-57 (87)
38 3trb_A Virulence-associated pr 27.5 39 0.0013 27.0 2.9 48 343-390 16-65 (104)
39 2amw_A Hypothetical protein NE 27.1 29 0.00098 26.0 1.9 16 71-86 46-61 (83)
40 1k78_A Paired box protein PAX5 26.8 1.2E+02 0.0041 24.6 5.8 42 350-391 45-103 (149)
41 3bs3_A Putative DNA-binding pr 26.4 32 0.0011 24.3 2.0 46 343-388 13-59 (76)
42 2a6c_A Helix-turn-helix motif; 26.0 50 0.0017 24.5 3.1 48 342-389 20-69 (83)
43 1sc3_B Interleukin-1 beta conv 26.0 41 0.0014 26.6 2.7 35 276-314 20-54 (88)
44 2l8n_A Transcriptional repress 25.7 37 0.0013 25.5 2.3 38 347-394 14-51 (67)
45 1r71_A Transcriptional repress 25.3 23 0.00079 31.6 1.2 40 349-388 48-87 (178)
46 2k9q_A Uncharacterized protein 24.8 41 0.0014 24.3 2.3 27 343-369 5-31 (77)
47 1lmb_3 Protein (lambda repress 24.7 54 0.0018 24.3 3.1 38 350-388 27-66 (92)
48 3vk0_A NHTF, transcriptional r 23.6 58 0.002 25.6 3.2 46 343-389 24-71 (114)
49 3g5g_A Regulatory protein; tra 23.5 54 0.0018 25.6 2.9 46 343-389 31-78 (99)
50 2lki_A Putative uncharacterize 23.4 36 0.0012 27.5 2.0 16 71-86 68-83 (105)
51 3s8q_A R-M controller protein; 23.4 57 0.002 23.7 2.9 45 343-388 14-60 (82)
52 2ict_A Antitoxin HIGA; helix-t 23.3 47 0.0016 25.0 2.5 47 343-389 11-58 (94)
53 3qq6_A HTH-type transcriptiona 23.1 63 0.0022 23.8 3.1 46 344-389 14-61 (78)
54 1zug_A Phage 434 CRO protein; 22.7 68 0.0023 22.2 3.1 27 343-369 6-32 (71)
55 3dfg_A Xcrecx, regulatory prot 22.3 1.6E+02 0.0056 25.2 6.1 65 294-365 35-107 (162)
56 1pdn_C Protein (PRD paired); p 22.2 93 0.0032 23.7 4.1 42 350-391 30-88 (128)
57 2wus_R RODZ, putative uncharac 21.8 78 0.0027 25.7 3.7 51 344-394 11-65 (112)
58 3lvy_A Carboxymuconolactone de 21.7 2.5E+02 0.0086 24.8 7.3 66 291-363 102-176 (207)
59 1dw9_A Cyanate lyase; cyanate 21.4 51 0.0018 29.4 2.7 49 342-390 15-64 (156)
60 2kpj_A SOS-response transcript 21.3 61 0.0021 24.4 2.8 47 342-388 11-58 (94)
61 1dv5_A APO-DCP, APO-D-alanyl c 21.1 24 0.00084 26.4 0.5 15 71-85 45-59 (80)
62 3gzm_A Acyl carrier protein; h 21.0 42 0.0014 24.8 1.8 16 71-86 46-61 (81)
63 2ql9_B Caspase-7; cysteine pro 21.0 48 0.0016 26.4 2.2 36 276-315 22-57 (97)
64 2xzd_B Caspase-3; hydrolase-pr 20.8 56 0.0019 27.4 2.7 35 276-314 27-61 (118)
65 3eus_A DNA-binding protein; st 20.5 65 0.0022 24.1 2.8 45 343-388 17-63 (86)
66 2gpe_A Bifunctional protein PU 20.3 45 0.0015 23.2 1.7 22 375-396 6-27 (52)
67 1r69_A Repressor protein CI; g 20.2 83 0.0029 21.6 3.1 27 343-369 4-30 (69)
No 1
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1
Probab=97.16 E-value=0.00044 Score=59.53 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=36.1
Q ss_pred HHHHHHhh--CC--CccCCCCCHHHHHHHHHHcCCCCChhHHHHHHcc
Q 037682 50 KVITHLKN--SG--IRVQPGLSDAEFARAEAEFGFVFPPDLRAILSAG 93 (397)
Q Consensus 50 ~vi~~L~~--~G--V~i~pGLSD~Ef~~IEa~fgF~FPpDlRa~L~~G 93 (397)
.||+.|++ .. +.+.+- |+++|..+|+.+|++||+|+|.||..+
T Consensus 3 ~~ie~L~~~~~~~~~~~~~~-t~e~I~~~E~~Lgi~fP~dYk~fl~~~ 49 (135)
T 2pag_A 3 EVIEQLREANEPVPVPLELP-DEDQLVEIEEQLFINIPFVFKEFLLTV 49 (135)
T ss_dssp HHHHHHHHHCCCCSSCCCCC-CHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCCCC-CHHHHHHHHHHHCCCCCHHHHHHHHHC
Confidence 67888887 33 444444 999999999999999999999999986
No 2
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1
Probab=96.89 E-value=0.0013 Score=56.51 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=39.3
Q ss_pred cHHHHHHHHhhCC--CccCCCCCHHHHHHHHHHcCCCCChhHHHHHHc
Q 037682 47 LADKVITHLKNSG--IRVQPGLSDAEFARAEAEFGFVFPPDLRAILSA 92 (397)
Q Consensus 47 ~~~~vi~~L~~~G--V~i~pGLSD~Ef~~IEa~fgF~FPpDlRa~L~~ 92 (397)
+-++|.+.+.+.+ +....++|+++|..+|+.+|++||.|+|.||..
T Consensus 6 ~~~~i~~~i~~~~~~~~~~~~~s~~~I~~~E~~Lgi~lP~~Yk~fL~~ 53 (160)
T 2icg_A 6 FLEEVDRLITLSGITFHASGTGTPELIKIYQDALGNEFPETYKLFLEK 53 (160)
T ss_dssp HHHHHHHHHHHCCSCCBCCCCCCHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3456666666655 677889999999999999999999999999997
No 3
>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1
Probab=96.77 E-value=0.0016 Score=55.88 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=36.2
Q ss_pred HHHHHHHhhCCCccCCCCCHHHHHHHHHHcCCCCChhHHHHHHc
Q 037682 49 DKVITHLKNSGIRVQPGLSDAEFARAEAEFGFVFPPDLRAILSA 92 (397)
Q Consensus 49 ~~vi~~L~~~GV~i~pGLSD~Ef~~IEa~fgF~FPpDlRa~L~~ 92 (397)
+++|+.+++. .....+.|+++|..+|+.+|++||.|+|.||..
T Consensus 8 ~~li~~~~~~-~~~~~~~see~I~~~E~~Lgi~lP~dYk~fLk~ 50 (153)
T 2prv_A 8 ENFINENKQN-AIFTEGASHENIGRIEENLQCDLPNSYKWFLEK 50 (153)
T ss_dssp HHHHHHHGGG-CEECCCCCHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHHhhhh-cccCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3556666655 356679999999999999999999999999996
No 4
>3d5p_A Putative glucan synthesis regulator of SMI1/KNR4; STR genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Bacteroides fragilis nctc 9343}
Probab=96.34 E-value=0.0025 Score=54.35 Aligned_cols=110 Identities=17% Similarity=0.119 Sum_probs=67.2
Q ss_pred CccCCCCCHHHHHHHHHHcCCCCChhHHHHHHccCCCCCCCCCCCCCcccHHHHHHhhcchhhHHHHHHHhhcccccCCC
Q 037682 60 IRVQPGLSDAEFARAEAEFGFVFPPDLRAILSAGLPLGPGFPDWRATGSARLHLRASLDLPIAAITFQIARNALWSKSWG 139 (397)
Q Consensus 60 V~i~pGLSD~Ef~~IEa~fgF~FPpDlRa~L~~GLPvG~gFPdWR~~~~~~~~Lr~~L~~P~~gil~~V~~n~fW~~sWG 139 (397)
....+++|++||..+|+.+|++||.|+|.||.. .+.+.+.-.+. . + .=++++.|.. .|.-+.
T Consensus 9 ~~~~~~~s~~~I~~~E~~lgi~lP~~Yk~fl~~---~NGg~~~~~~~---~--~---~l~~~~~i~e---~n~~~~---- 70 (144)
T 3d5p_A 9 WYKKDGASSASIDDVEKLLNTTLPKQYKSFLLW---SNGGEGKLGDN---Y--I---YIWAIEDVIA---YNHDYG---- 70 (144)
T ss_dssp EEECCCCCHHHHHHHHHHHTSCCCHHHHHHHHH---CSSEEEEETTE---E--E---EECCHHHHHH---HHHHHT----
T ss_pred cccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHH---hCCCcccCCCc---e--e---EeeCHHHHHH---HHHHhh----
Confidence 367899999999999999999999999999996 11111110000 0 0 0022233322 111110
Q ss_pred CCCCCHHHHHHHHHHhhhcCCc-eeeecc---cccccCCCCCCCCCeEEEeC-----CceEEEcCchhHHHHHhh
Q 037682 140 PRPSDPEKALRVARNALKRAPL-LIPIFN---HCYIPCNPTLAGNPIFYVDE-----NRIFCCGLDLSDFFERES 205 (397)
Q Consensus 140 ~RP~~~~eal~~Ar~~l~~aP~-LVPIyg---HRYlPs~p~~aGnPVfSV~~-----tDIi~yG~DLadyf~rEf 205 (397)
. -...|. +|||.+ -||.=.. ...+|+.++. .++.++.-++.+|+.+-.
T Consensus 71 --------------~-~~~~p~~~i~i~~D~g~~~~~d~---~~~~V~~~d~~~~~~~~~~~iA~sF~eFL~~~~ 127 (144)
T 3d5p_A 71 --------------I-QKYLQKEYWAFGMDGDIGYILHL---SDNSIYRVDLGDLDITSIKYIAPSFDDFLGKAI 127 (144)
T ss_dssp --------------H-HHHSCTTEEEEEEETTEEEEEET---TTCCEEEEETTSCCGGGCEEEESSHHHHHHHHT
T ss_pred --------------h-hhhcCCCEEEEEEcCCeEEEECC---CCCEEEEEECCCCChhhheeHhhCHHHHHHHHh
Confidence 0 112577 999965 4564322 1246887655 368899999999998766
No 5
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=51.98 E-value=14 Score=35.14 Aligned_cols=59 Identities=20% Similarity=0.158 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhCCCCCchhhhhhhccCCCCcCccccccchHHHHHHHHHHHHHhhHHHHhcCCChHHHhHh
Q 037682 290 DDYMGQIGSVLREGGWSEPDIVEIVTVSASGFFEGEMVMLDNQSVLDGLLLKADRLSESLRKSGWSSEEVSDA 362 (397)
Q Consensus 290 ~~yl~~~~~~LR~GGW~e~di~Em~~~~~~~~~~ge~~~~d~~avl~~L~~~~d~~s~sL~raGWs~edV~ea 362 (397)
..-++.+-.++++=||+++||.+|+.-.+.-+.-.++ .|--|+|.+-. .||+.++|++.
T Consensus 237 ~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~----------~l~~k~~fl~~----mg~~~~~i~~~ 295 (343)
T 3mva_O 237 RRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEK----------KFNDKIDCLME----ENISISQIIEN 295 (343)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHH----------HHHHHHHHHHT----TTCCHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHH----------HHHHHHHHHHH----cCCCHHHHHhC
Confidence 3334444456678999999999999887754332221 23556666544 69999999853
No 6
>2pfx_A Uncharacterized peroxidase-related protein; YP_614459.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE PG4; 1.70A {Silicibacter SP} SCOP: a.152.1.3
Probab=47.12 E-value=35 Score=29.46 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhCCCCCchhhhhhh-ccCCCCcCccccccchHHHH----HHHHHHHHHhh----HHHHhcCCChHHHhH
Q 037682 291 DYMGQIGSVLREGGWSEPDIVEIVT-VSASGFFEGEMVMLDNQSVL----DGLLLKADRLS----ESLRKSGWSSEEVSD 361 (397)
Q Consensus 291 ~yl~~~~~~LR~GGW~e~di~Em~~-~~~~~~~~ge~~~~d~~avl----~~L~~~~d~~s----~sL~raGWs~edV~e 361 (397)
.|++-=...+++.|.++++|+.+.. ...+ .|+. ++..+ ++|...-+.++ +.|+++|||-++|+|
T Consensus 88 yC~~~H~~~a~~~G~~~~~i~~l~~~~~~~-~~~~------~e~a~l~~a~~lt~~~~~v~d~~~~~l~~~G~s~~ei~e 160 (191)
T 2pfx_A 88 YCLVAHGAAVRQLSGDPQLGEMLVMNYRVA-PLDA------RQRVMLDFAAKMTRASAEIEEADREVLRSHGFNDRDIWD 160 (191)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHCGGGS-CCCH------HHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhhcC-CCCH------HHHHHHHHHHHHHhCcCCCCHHHHHHHHHcCCCHHHHHH
Confidence 4666666778888999999988863 2322 2322 22222 23333222334 468899999999998
Q ss_pred hh
Q 037682 362 AF 363 (397)
Q Consensus 362 al 363 (397)
..
T Consensus 161 l~ 162 (191)
T 2pfx_A 161 IA 162 (191)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 7
>3c1l_A Putative antioxidant defense protein MLR4105; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Mesorhizobium loti}
Probab=42.19 E-value=38 Score=29.07 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhCCCCCchhhhhhh-ccCCCCcCccccccchHHHHHHHHHHH----HHhh----HHHHhcCCChHHHhH
Q 037682 291 DYMGQIGSVLREGGWSEPDIVEIVT-VSASGFFEGEMVMLDNQSVLDGLLLKA----DRLS----ESLRKSGWSSEEVSD 361 (397)
Q Consensus 291 ~yl~~~~~~LR~GGW~e~di~Em~~-~~~~~~~~ge~~~~d~~avl~~L~~~~----d~~s----~sL~raGWs~edV~e 361 (397)
.|++-=...+++.|.++++|+.+.. ...+ .|+. +|..+-+++.++ +.++ +.|+++|||-++|+|
T Consensus 85 yC~~~H~~~a~~~G~~~~~i~~l~~~~~~~-~~~~------~e~a~l~~a~~lt~~~~~v~d~~~~~l~~~G~s~~ei~e 157 (188)
T 3c1l_A 85 YCLTAHGAAVRQLSGDPALGEMLVMNFRAA-DLSP------RQTAMLEFAVKLTEEPAKIVEADRAALRKAGFSDRDIWD 157 (188)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHCGGGG-CCCH------HHHHHHHHHHHHHHCGGGCCHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhhcC-CCCH------HHHHHHHHHHHHHhCcCCCCHHHHHHHHHcCCCHHHHHH
Confidence 4666667778888999999988863 2222 2322 222222222222 2333 457889999999998
Q ss_pred hh
Q 037682 362 AF 363 (397)
Q Consensus 362 al 363 (397)
..
T Consensus 158 l~ 159 (188)
T 3c1l_A 158 IA 159 (188)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 8
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=40.98 E-value=15 Score=27.99 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=23.8
Q ss_pred HHHHHhhHHHHhcCCChHHHhHhhcCCC
Q 037682 340 LKADRLSESLRKSGWSSEEVSDAFGFDF 367 (397)
Q Consensus 340 ~~~d~~s~sL~raGWs~edV~eal~~d~ 367 (397)
+|-+++-..|++.|||..++++.+|..-
T Consensus 9 ~~~~ri~~~l~~~glT~~~LA~~~Gvs~ 36 (74)
T 1neq_A 9 WHRADVIAGLKKRKLSLSALSRQFGYAP 36 (74)
T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHSSCH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHCcCH
Confidence 4667777889999999999999999863
No 9
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein; YP_296737.1, carboxymuconolactone decarboxylase family; HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Probab=40.80 E-value=64 Score=27.97 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhCCCCCchhhhhhh-ccCCCCcCc-cccccchHHHHHHHHHHHHHhh----HHHHhcCCChHHHhHhh
Q 037682 291 DYMGQIGSVLREGGWSEPDIVEIVT-VSASGFFEG-EMVMLDNQSVLDGLLLKADRLS----ESLRKSGWSSEEVSDAF 363 (397)
Q Consensus 291 ~yl~~~~~~LR~GGW~e~di~Em~~-~~~~~~~~g-e~~~~d~~avl~~L~~~~d~~s----~sL~raGWs~edV~eal 363 (397)
.|++-=...+++.|.++++|+++.. ...+ .|+. |.+.+ +.-++|...-+.++ +.|+++|||-++|+|..
T Consensus 89 yC~~~H~~~a~~~G~~~~~i~~l~~~~~~~-~~~~~era~l---~~a~~lt~~~~~v~d~~~~~l~~~G~s~~ei~el~ 163 (197)
T 2prr_A 89 YCVVAHGAILRIYEKKPLVADQVAVNYLKA-DIPPRQRAML---DFALKVCKASHEVNEADFEALREHGFTDEDAWDIA 163 (197)
T ss_dssp HHHHHHHHHHHHHHTCTTHHHHHHHHGGGS-SCCHHHHHHH---HHHHHHHHHGGGCCHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhhhcC-CCCHHHHHHH---HHHHHHHhCcCCCCHHHHHHHHHcCCCHHHHHHHH
Confidence 4666666778888999999999873 3333 3332 11110 11122222222233 45788999999999864
No 10
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=37.11 E-value=42 Score=27.05 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHH-------HhhHHHHhcCCChHHHhHhhcCCCCCcc
Q 037682 332 QSVLDGLLLKAD-------RLSESLRKSGWSSEEVSDAFGFDFRPEK 371 (397)
Q Consensus 332 ~avl~~L~~~~d-------~~s~sL~raGWs~edV~eal~~d~~~~~ 371 (397)
+..++.+..+++ ++-.--++.|+|.+|+++.||..-..-.
T Consensus 56 ~~~~~e~~r~~~~~~~~~~~l~~~R~~~glsq~~la~~~g~s~~~i~ 102 (133)
T 3o9x_A 56 MAQVKAFRASVNAETVAPEFIVKVRKKLSLTQKEASEIFGGGVNAFS 102 (133)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHTTCCHHHHHHHHCSCTTHHH
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCHHHHHHHHCCCHHHHH
Confidence 344455555554 4666667899999999999999877654
No 11
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=35.43 E-value=17 Score=26.04 Aligned_cols=46 Identities=15% Similarity=0.118 Sum_probs=31.2
Q ss_pred HHhhHHHHhcCCChHHHhHhhcCCCCCcc--ccCCcccCCHHHHHHHHH
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGFDFRPEK--ERKPAKKLSPELVERIGK 389 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~d~~~~~--e~~~~~~~~p~~~~~i~~ 389 (397)
+++-.-+.+.|||.+|+++.+|..-..-. |+. ...++.+.+.+|-+
T Consensus 11 ~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g-~~~~~~~~l~~ia~ 58 (73)
T 3omt_A 11 NRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTN-DVQPSLETLFDIAE 58 (73)
T ss_dssp BCHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTT-SSCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC-CCCCCHHHHHHHHH
Confidence 35556677899999999999998644433 222 24577777766644
No 12
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=35.20 E-value=26 Score=25.69 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=29.4
Q ss_pred HHhhHHHHhcCCChHHHhHhhcCCCCCcccc-CCcccCCHHHHHHHHH
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGFDFRPEKER-KPAKKLSPELVERIGK 389 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~d~~~~~e~-~~~~~~~p~~~~~i~~ 389 (397)
+++-.-+++.|||.+|+++.+|..-..-..- +-....+++.+.+|-+
T Consensus 15 ~~l~~~r~~~gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~ 62 (80)
T 3kz3_A 15 AIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAK 62 (80)
T ss_dssp HHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4455556789999999999999864433221 2233456666555543
No 13
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=35.00 E-value=29 Score=25.33 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=29.7
Q ss_pred HHhhHHHHhcCCChHHHhHhhcCCCCCcccc-CCcccCCHHHHHHHHH
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGFDFRPEKER-KPAKKLSPELVERIGK 389 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~d~~~~~e~-~~~~~~~p~~~~~i~~ 389 (397)
+++-.-..+.|||.+|+++.+|..-..-..- +-...++.+.+.+|-+
T Consensus 17 ~~l~~~R~~~gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~ 64 (83)
T 3f6w_A 17 DLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCR 64 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 4455556679999999999999864433321 2223567676665543
No 14
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=34.72 E-value=32 Score=27.67 Aligned_cols=28 Identities=4% Similarity=-0.063 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHcCCCCChhHHHHHHc
Q 037682 65 GLSDAEFARAEAEFGFVFPPDLRAILSA 92 (397)
Q Consensus 65 GLSD~Ef~~IEa~fgF~FPpDlRa~L~~ 92 (397)
||||.+|+.||..+.-..-.-+..+|..
T Consensus 23 Glse~~Id~I~~~~~~d~~Eq~~qmL~~ 50 (86)
T 3oq9_A 23 NIKEGKIDEIMHDSIQDTAEQKVQLLLC 50 (86)
T ss_dssp TSCHHHHHHHHHTCTTCCTTHHHHHHHH
T ss_pred CCCHhHHHHHHHhCCCChHHHHHHHHHH
Confidence 7999999999999987666888888863
No 15
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=34.24 E-value=30 Score=24.34 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=29.4
Q ss_pred HHHhhHHHHhcCCChHHHhHhhcCCCCCcc--ccCCcccCCHHHHHHHH
Q 037682 342 ADRLSESLRKSGWSSEEVSDAFGFDFRPEK--ERKPAKKLSPELVERIG 388 (397)
Q Consensus 342 ~d~~s~sL~raGWs~edV~eal~~d~~~~~--e~~~~~~~~p~~~~~i~ 388 (397)
.+++-....+.|||.+|+++.+|..-..-. |+. ....+.+.+.+|-
T Consensus 15 ~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g-~~~~~~~~l~~l~ 62 (74)
T 1y7y_A 15 GQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERG-QRNVSLVNILKLA 62 (74)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT-CSCCBHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCC-CCCCCHHHHHHHH
Confidence 455566677899999999999997643322 222 2445666655443
No 16
>2oyo_A Uncharacterized peroxidase-related protein; YP_604910.1, uncharacterised peroxidase-related, uncharacter peroxidase-related; 1.51A {Deinococcus geothermalis} SCOP: a.152.1.3
Probab=33.80 E-value=66 Score=27.86 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhCCCCCchhhhhhh-ccCCCCcCccccccchHHHHHHHHHHH----HHhh----HHHHhcCCChHHHhH
Q 037682 291 DYMGQIGSVLREGGWSEPDIVEIVT-VSASGFFEGEMVMLDNQSVLDGLLLKA----DRLS----ESLRKSGWSSEEVSD 361 (397)
Q Consensus 291 ~yl~~~~~~LR~GGW~e~di~Em~~-~~~~~~~~ge~~~~d~~avl~~L~~~~----d~~s----~sL~raGWs~edV~e 361 (397)
.|++-=...+++-|-++++|.++.. ...+ .|+- ++..+-+++.++ ..++ +.|+++|||-++|+|
T Consensus 93 yC~~~H~~~a~~~G~~~~~i~~l~~~~~~~-~~~~------~e~a~l~~a~~lt~~~~~v~d~~~~~l~~~G~s~~ei~e 165 (196)
T 2oyo_A 93 YCAVSHGAALREFLGDPQKADAVAVNWRHA-DLTE------REQALAAYAEKLTRHPAEVTAADLEPLRAVGLDDHQIME 165 (196)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHCGGGS-CCCH------HHHHHHHHHHHHHHCGGGCCGGGGHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhhcC-CCCH------HHHHHHHHHHHHHhCcCCCCHHHHHHHHHcCCCHHHHHH
Confidence 4566666677888999999988863 2222 2322 222222222222 1233 457899999999998
Q ss_pred hh
Q 037682 362 AF 363 (397)
Q Consensus 362 al 363 (397)
..
T Consensus 166 l~ 167 (196)
T 2oyo_A 166 LV 167 (196)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 17
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=33.77 E-value=23 Score=30.02 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHcCCCCChhHHHHHH
Q 037682 65 GLSDAEFARAEAEFGFVFPPDLRAILS 91 (397)
Q Consensus 65 GLSD~Ef~~IEa~fgF~FPpDlRa~L~ 91 (397)
||||.||+.||..++=.+-.-...+|.
T Consensus 36 GLse~~Id~Ie~~~~r~l~Eq~yqmLr 62 (112)
T 1ich_A 36 GLSDHEIDRLELQNGRCLREAQYSMLA 62 (112)
T ss_dssp TCCHHHHHHHHHHCCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCcCChHHHHHHHHH
Confidence 899999999999985444455555664
No 18
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=33.65 E-value=15 Score=29.52 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=27.6
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHHHhhCCCCCchhhhhhh
Q 037682 276 RFFDMPRSEIPKWVDDYMGQIGSVLREGGWSEPDIVEIVT 315 (397)
Q Consensus 276 ~~~~~~~~~~~~Wv~~yl~~~~~~LR~GGW~e~di~Em~~ 315 (397)
++.+........| |+..+-.+|++-|++.+||.+|++
T Consensus 24 G~~S~R~~~~GSw---fIq~Lc~~l~~~~~~~~dl~~ilt 60 (95)
T 1qtn_B 24 NCVSYRNPAEGTW---YIQSLCQSLRERCPRGDDILTILT 60 (95)
T ss_dssp TBCCEEETTTEEH---HHHHHHHHHHHHGGGTCCHHHHHH
T ss_pred CcEEEecCCCCcH---HHHHHHHHHHHhCCccccHHHHHH
Confidence 4444434455677 788889999998988779999984
No 19
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=33.58 E-value=15 Score=27.64 Aligned_cols=41 Identities=22% Similarity=0.177 Sum_probs=29.3
Q ss_pred HHHHhcCCChHHHhHhhcCCCCCccccCCcccCCHHHHHHHHHHHhhh
Q 037682 347 ESLRKSGWSSEEVSDAFGFDFRPEKERKPAKKLSPELVERIGKLAESV 394 (397)
Q Consensus 347 ~sL~raGWs~edV~eal~~d~~~~~e~~~~~~~~p~~~~~i~~la~~v 394 (397)
+.=+++|-|.--|+..|.- ..+ ...+++|.++||.+.|+..
T Consensus 5 diA~~aGVS~sTVSrvLng---~~~----~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 5 EIARLAGVSRTTASYVING---KAK----QYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HHHHHHTSCHHHHHHHHHT---CTT----TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcC---CCC----CCCCCHHHHHHHHHHHHHh
Confidence 3446788888888888852 100 1369999999999988754
No 20
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.68 E-value=12 Score=30.61 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=17.2
Q ss_pred ccCCHHHHHHHHHHHhhhhc
Q 037682 377 KKLSPELVERIGKLAESVSR 396 (397)
Q Consensus 377 ~~~~p~~~~~i~~la~~v~r 396 (397)
.--||++-..|.|+|++|+|
T Consensus 18 i~PPpdir~iIdktA~fVak 37 (90)
T 2e5z_A 18 IPPPPDVQPVIDKLAEYVAR 37 (90)
T ss_dssp CCCCTTTHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 34468999999999999997
No 21
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=32.66 E-value=80 Score=24.85 Aligned_cols=42 Identities=17% Similarity=0.038 Sum_probs=28.3
Q ss_pred HHhcCCChHHHhHhhcCCC-------------CCccccCCcccCCHHHHHHHHHH
Q 037682 349 LRKSGWSSEEVSDAFGFDF-------------RPEKERKPAKKLSPELVERIGKL 390 (397)
Q Consensus 349 L~raGWs~edV~eal~~d~-------------~~~~e~~~~~~~~p~~~~~i~~l 390 (397)
|.+.|+|..+|+..||..- +..+..++..+++++....|.++
T Consensus 18 ~~~~G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~ 72 (141)
T 1u78_A 18 MKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA 72 (141)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH
Confidence 4568999999999999751 11111223457999988777765
No 22
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=32.30 E-value=26 Score=27.42 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=31.9
Q ss_pred HHHhhHHHHhcCCChHHHhHhhcCCCCCcc--ccCCcccCCHHHHHHHHH
Q 037682 342 ADRLSESLRKSGWSSEEVSDAFGFDFRPEK--ERKPAKKLSPELVERIGK 389 (397)
Q Consensus 342 ~d~~s~sL~raGWs~edV~eal~~d~~~~~--e~~~~~~~~p~~~~~i~~ 389 (397)
.+++-.-+++.|||.+|+++.+|..-..-. |+. +.++.+.+.+|-+
T Consensus 26 ~~rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G--~~~s~~~l~kIa~ 73 (88)
T 3t76_A 26 YNKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKN--ENVSLTVLLAICE 73 (88)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC--CCcCHHHHHHHHH
Confidence 356677788999999999999998654433 232 2357776665543
No 23
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=32.25 E-value=13 Score=34.14 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=30.0
Q ss_pred HHhcCCChHHHhHhhcCCCCCccccCCcccCCHHHHHHHHH
Q 037682 349 LRKSGWSSEEVSDAFGFDFRPEKERKPAKKLSPELVERIGK 389 (397)
Q Consensus 349 L~raGWs~edV~eal~~d~~~~~e~~~~~~~~p~~~~~i~~ 389 (397)
|.+.|||.++|++.||..-.--+......+|||++.+.|..
T Consensus 130 l~~~g~t~~~iA~~lG~s~~~V~~~l~l~~l~~~v~~~l~~ 170 (230)
T 1vz0_A 130 LLEMGLTQEEVARRVGKARSTVANALRLLQLPPEALEALER 170 (230)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHHGGGSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHHc
Confidence 33679999999999997633333333566999999988753
No 24
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=32.19 E-value=49 Score=27.09 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=30.5
Q ss_pred HHHhhHHHHhcCCChHHHhHhhcCCCCCcc--ccCCcccCCHHHHHHH
Q 037682 342 ADRLSESLRKSGWSSEEVSDAFGFDFRPEK--ERKPAKKLSPELVERI 387 (397)
Q Consensus 342 ~d~~s~sL~raGWs~edV~eal~~d~~~~~--e~~~~~~~~p~~~~~i 387 (397)
..++-.-..+.|||-+|+++.+|..-..-. |+.....++.+.+.+|
T Consensus 42 g~~L~~~R~~~glTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~~l~~i 89 (120)
T 2o38_A 42 AYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTL 89 (120)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHH
Confidence 355666677899999999999998644333 3322335666665554
No 25
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=32.18 E-value=35 Score=24.08 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=28.4
Q ss_pred HHhhHHHHhcCCChHHHhHhhcCCCCCcccc-CCcccCCHHHHHHHH
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGFDFRPEKER-KPAKKLSPELVERIG 388 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~d~~~~~e~-~~~~~~~p~~~~~i~ 388 (397)
+++-..+.+.|||.+|+++.+|..-..-..- +-....+.+.+.+|-
T Consensus 8 ~~l~~~r~~~gls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia 54 (76)
T 1adr_A 8 ERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALS 54 (76)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHH
Confidence 4555667788999999999999764433211 112234666555443
No 26
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=31.44 E-value=46 Score=25.82 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHhhCCCCCchhhhhhhccCCC---CcCccccccchHHHHHHHHHHHHHhhHHHHhcCCChHHHhHhh
Q 037682 287 KWVDDYMGQIGSVLREGGWSEPDIVEIVTVSASG---FFEGEMVMLDNQSVLDGLLLKADRLSESLRKSGWSSEEVSDAF 363 (397)
Q Consensus 287 ~Wv~~yl~~~~~~LR~GGW~e~di~Em~~~~~~~---~~~ge~~~~d~~avl~~L~~~~d~~s~sL~raGWs~edV~eal 363 (397)
..+...++.|-.-+.+ .|+-+||.+.+.++..- .|--.. -..-...+ .-.+++.....|...+.|..||++.+
T Consensus 5 ~~i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~~-G~s~~~~~--~~~Rl~~A~~lL~~~~~si~~IA~~~ 80 (108)
T 3oou_A 5 PIIQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQKEM-GEHFTDYL--NRYRVNYAKEELLQTKDNLTIIAGKS 80 (108)
T ss_dssp CHHHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHHHH-SSCHHHHH--HHHHHHHHHHHHHHCCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHHHH-CcCHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHc
Confidence 3455556666666655 79999999999887754 221110 01112221 13456667777888899999999999
Q ss_pred cCC
Q 037682 364 GFD 366 (397)
Q Consensus 364 ~~d 366 (397)
||.
T Consensus 81 Gf~ 83 (108)
T 3oou_A 81 GYT 83 (108)
T ss_dssp TCC
T ss_pred CCC
Confidence 984
No 27
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=31.34 E-value=34 Score=23.53 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=27.6
Q ss_pred HHhhHHHHhcCCChHHHhHhhcCCCCCcccc-CCcccCCHHHHHHH
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGFDFRPEKER-KPAKKLSPELVERI 387 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~d~~~~~e~-~~~~~~~p~~~~~i 387 (397)
+++-....+.|||.+|+++.+|..-..-..- +-....+.+.+.+|
T Consensus 8 ~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i 53 (68)
T 2r1j_L 8 ERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLAL 53 (68)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHH
Confidence 4555667788999999999999764433211 11223455554444
No 28
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=31.27 E-value=25 Score=25.95 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=18.9
Q ss_pred cccCCHHHHHHHHHHHhhhhcC
Q 037682 376 AKKLSPELVERIGKLAESVSRS 397 (397)
Q Consensus 376 ~~~~~p~~~~~i~~la~~v~r~ 397 (397)
.++||+++.+|+..||+..-|+
T Consensus 7 svrL~~el~~rL~~lA~~~~rs 28 (58)
T 2ay0_A 7 GVMLDDATRERIKSAATRIDRT 28 (58)
T ss_dssp EEEECHHHHHHHHHHHHHTTCC
T ss_pred EeECCHHHHHHHHHHHHHHCcC
Confidence 5789999999999999976553
No 29
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=30.94 E-value=23 Score=24.22 Aligned_cols=44 Identities=18% Similarity=0.072 Sum_probs=27.5
Q ss_pred hhHHHHhcCCChHHHhHhhcCCCCCcccc-CCcccCCHHHHHHHH
Q 037682 345 LSESLRKSGWSSEEVSDAFGFDFRPEKER-KPAKKLSPELVERIG 388 (397)
Q Consensus 345 ~s~sL~raGWs~edV~eal~~d~~~~~e~-~~~~~~~p~~~~~i~ 388 (397)
+-.-+.+.|+|.+|+++.+|..-..-..- +-....+.+.+.+|-
T Consensus 6 l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~ 50 (66)
T 2xi8_A 6 LKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIA 50 (66)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHH
Confidence 34456778999999999999764433221 112345666655543
No 30
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=30.30 E-value=28 Score=27.29 Aligned_cols=76 Identities=20% Similarity=0.178 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHhhCCCCCchhhhhhhccCCC---CcCccccccchHHHHHHHHHHHHHhhHHHHhcCCChHHHhHhh
Q 037682 287 KWVDDYMGQIGSVLREGGWSEPDIVEIVTVSASG---FFEGEMVMLDNQSVLDGLLLKADRLSESLRKSGWSSEEVSDAF 363 (397)
Q Consensus 287 ~Wv~~yl~~~~~~LR~GGW~e~di~Em~~~~~~~---~~~ge~~~~d~~avl~~L~~~~d~~s~sL~raGWs~edV~eal 363 (397)
..|...++.|-.-+.+. |+-+||.+.+.++..- .|.-. .-..-...|. -.++......|...+.++.||++.+
T Consensus 7 ~~i~~~~~~i~~~~~~~-~~~~~lA~~~~~S~~~l~r~fk~~-~G~s~~~~~~--~~Rl~~A~~lL~~~~~~i~eIA~~~ 82 (113)
T 3oio_A 7 PKLTEAVSLMEANIEEP-LSTDDIAYYVGVSRRQLERLFKQY-LGTVPSKYYL--ELRLNRARQLLQQTSKSIVQIGLAC 82 (113)
T ss_dssp HHHHHHHHHHHTCSSSC-CCHHHHHHHHTSCHHHHHHHHHHH-TSSCHHHHHH--HHHHHHHHHHHHHCCCCHHHHHHHT
T ss_pred HHHHHHHHHHHhhhcCC-CCHHHHHHHHCcCHHHHHHHHHHH-HCcCHHHHHH--HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45666666666556555 9999999999887754 22111 0011122221 3356667777888899999999999
Q ss_pred cCC
Q 037682 364 GFD 366 (397)
Q Consensus 364 ~~d 366 (397)
||.
T Consensus 83 Gf~ 85 (113)
T 3oio_A 83 GFS 85 (113)
T ss_dssp TCS
T ss_pred CCC
Confidence 985
No 31
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=30.15 E-value=87 Score=21.78 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=18.2
Q ss_pred HHhhHHHHhcCCChHHHhHhhcC
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGF 365 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~ 365 (397)
+++-.-..+.|||.+|+++.+|.
T Consensus 11 ~~l~~~r~~~glsq~~lA~~~g~ 33 (71)
T 2ewt_A 11 AKLRAIRTQQGLSLHGVEEKSQG 33 (71)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCC
Confidence 44555567789999999999993
No 32
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=29.88 E-value=51 Score=25.25 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=45.9
Q ss_pred HHHHHHHHhhCCCCCchhhhhhhccCCC---CcCccccccchHHHHHHHHHHHHHhhHHHHhcCCChHHHhHhhcCC
Q 037682 293 MGQIGSVLREGGWSEPDIVEIVTVSASG---FFEGEMVMLDNQSVLDGLLLKADRLSESLRKSGWSSEEVSDAFGFD 366 (397)
Q Consensus 293 l~~~~~~LR~GGW~e~di~Em~~~~~~~---~~~ge~~~~d~~avl~~L~~~~d~~s~sL~raGWs~edV~eal~~d 366 (397)
++-|-.-+.++.|+-+||.+.+.++..- .|.-.. -..-...+. -.++.+....|+..+.|..||+..+||.
T Consensus 8 ~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~-g~s~~~~~~--~~Rl~~A~~lL~~~~~si~~iA~~~Gf~ 81 (103)
T 3lsg_A 8 QNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNF-GIPFQDYLL--QKRMEKAKLLLLTTELKNYEIAEQVGFE 81 (103)
T ss_dssp HHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHH-SSCHHHHHH--HHHHHHHHHHHHHCCCCHHHHHHHTTCS
T ss_pred HHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHH-CcCHHHHHH--HHHHHHHHHHHHCCCCCHHHHHHHhCCC
Confidence 3344455677789999999999887755 221110 011122221 3456667777888899999999999984
No 33
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=29.54 E-value=50 Score=23.45 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=29.8
Q ss_pred HHhhHHHHhcCCChHHHhHhhcCCCCCcc--ccCCcccCCHHHHHHHH
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGFDFRPEK--ERKPAKKLSPELVERIG 388 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~d~~~~~--e~~~~~~~~p~~~~~i~ 388 (397)
+++-.-..+.|||.+|+++.+|..-..-. |+.....++.+.+.+|-
T Consensus 10 ~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia 57 (78)
T 3b7h_A 10 EHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVC 57 (78)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 44555677889999999999997644332 22222356766665553
No 34
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=29.11 E-value=40 Score=23.90 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=27.7
Q ss_pred HHhhHHHHhcCCChHHHhHhhcCCCCCcccc-CCcccCCHHHHHHH
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGFDFRPEKER-KPAKKLSPELVERI 387 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~d~~~~~e~-~~~~~~~p~~~~~i 387 (397)
+++-.-..+.|||.+|+++.+|..-..-..- +-...++.+.+.+|
T Consensus 13 ~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l 58 (77)
T 2b5a_A 13 RTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKI 58 (77)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
Confidence 4455566788999999999999764333211 11224555555444
No 35
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=28.09 E-value=29 Score=27.20 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhhhc
Q 037682 382 ELVERIGKLAESVSR 396 (397)
Q Consensus 382 ~~~~~i~~la~~v~r 396 (397)
++...|.|+|++|+|
T Consensus 16 ~~~~iIdktA~fVak 30 (78)
T 1x4o_A 16 EAKNLAEKLARFIAD 30 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999999997
No 36
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=27.88 E-value=1.1e+02 Score=28.96 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=41.7
Q ss_pred HHHHHHHHHh-hCCCCCchhhhhhhccCCCCcCccccccchHHHHHHHHHHHHHhhHHHHhcCCChHHHhHhhc
Q 037682 292 YMGQIGSVLR-EGGWSEPDIVEIVTVSASGFFEGEMVMLDNQSVLDGLLLKADRLSESLRKSGWSSEEVSDAFG 364 (397)
Q Consensus 292 yl~~~~~~LR-~GGW~e~di~Em~~~~~~~~~~ge~~~~d~~avl~~L~~~~d~~s~sL~raGWs~edV~eal~ 364 (397)
-++.....|+ +-|.+++|+..++..-+...+ .... +.|--+++.+-+.|++.|||.+||..++.
T Consensus 198 ~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l-----~~s~----~~l~~~~~~l~e~~~~lG~s~~ev~~~v~ 262 (343)
T 3mva_O 198 RVKANIEFLRSTFNLNSEELLVLICGPGAEIL-----DLSN----DYARRSYANIKEKLFSLGCTEEEVQKFVL 262 (343)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGG-----GCCT----THHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhcCChHHh-----hccH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3444445566 588998888877754332211 1111 23355777788888999999999999875
No 37
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=27.52 E-value=26 Score=27.72 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=13.6
Q ss_pred HHHHHHHcCCCCChh
Q 037682 71 FARAEAEFGFVFPPD 85 (397)
Q Consensus 71 f~~IEa~fgF~FPpD 85 (397)
+..||.+||++||++
T Consensus 43 i~~lE~eF~I~i~~e 57 (87)
T 2kci_A 43 IVSLEVHYKIKFALG 57 (87)
T ss_dssp HHHHHHHHTCCCCHH
T ss_pred HHHHHHHHCCccCHH
Confidence 578999999999986
No 38
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=27.51 E-value=39 Score=27.00 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=32.6
Q ss_pred HHhhH-HHHhcCCChHHHhHhhcCCCCCcccc-CCcccCCHHHHHHHHHH
Q 037682 343 DRLSE-SLRKSGWSSEEVSDAFGFDFRPEKER-KPAKKLSPELVERIGKL 390 (397)
Q Consensus 343 d~~s~-sL~raGWs~edV~eal~~d~~~~~e~-~~~~~~~p~~~~~i~~l 390 (397)
+++-. -+.+.|+|.+|+++.+|..-..-..= +-...++++.+.+|.+.
T Consensus 16 ~~Lk~~lr~~~gltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~ 65 (104)
T 3trb_A 16 EILAEELGFLDKMSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKF 65 (104)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34554 47789999999999999854433321 22346899988887653
No 39
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=27.06 E-value=29 Score=25.96 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=13.4
Q ss_pred HHHHHHHcCCCCChhH
Q 037682 71 FARAEAEFGFVFPPDL 86 (397)
Q Consensus 71 f~~IEa~fgF~FPpDl 86 (397)
+..||++||+++|++-
T Consensus 46 v~~lE~~fgi~i~~~~ 61 (83)
T 2amw_A 46 ITALEEYFDFSVDDDE 61 (83)
T ss_dssp HHHHHHHTTCCCCTTT
T ss_pred HHHHHHHhCCeeCHHh
Confidence 4569999999999874
No 40
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=26.77 E-value=1.2e+02 Score=24.56 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=28.0
Q ss_pred HhcCCChHHHhHhhcCC----------------CCCccccC-CcccCCHHHHHHHHHHH
Q 037682 350 RKSGWSSEEVSDAFGFD----------------FRPEKERK-PAKKLSPELVERIGKLA 391 (397)
Q Consensus 350 ~raGWs~edV~eal~~d----------------~~~~~e~~-~~~~~~p~~~~~i~~la 391 (397)
...|+|..+|++.||.. +.+.+.++ ...+++++..+.|..+.
T Consensus 45 ~~~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~ 103 (149)
T 1k78_A 45 AHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYK 103 (149)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHH
Confidence 35799999999998864 22322222 25578998887777664
No 41
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=26.37 E-value=32 Score=24.34 Aligned_cols=46 Identities=9% Similarity=0.152 Sum_probs=28.5
Q ss_pred HHhhHHHHhcCCChHHHhHhhcCCCCCcccc-CCcccCCHHHHHHHH
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGFDFRPEKER-KPAKKLSPELVERIG 388 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~d~~~~~e~-~~~~~~~p~~~~~i~ 388 (397)
+++-.-+.+.|||.+|+++.+|..-..-..- +-....+.+.+.+|-
T Consensus 13 ~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia 59 (76)
T 3bs3_A 13 NRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVA 59 (76)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHH
Confidence 4455566788999999999999764433221 112235666555443
No 42
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=26.02 E-value=50 Score=24.49 Aligned_cols=48 Identities=21% Similarity=0.150 Sum_probs=31.6
Q ss_pred HHHhhHHHHhcCCChHHHhHhhcCCCCCcc--ccCCcccCCHHHHHHHHH
Q 037682 342 ADRLSESLRKSGWSSEEVSDAFGFDFRPEK--ERKPAKKLSPELVERIGK 389 (397)
Q Consensus 342 ~d~~s~sL~raGWs~edV~eal~~d~~~~~--e~~~~~~~~p~~~~~i~~ 389 (397)
.+++-.-+.+.|+|.+|+++.+|..-..-. |+.....++.+.+.+|-+
T Consensus 20 ~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~ 69 (83)
T 2a6c_A 20 LIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMIT 69 (83)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 456677788899999999999998644333 222222466666555443
No 43
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=25.97 E-value=41 Score=26.64 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=26.9
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHHHhhCCCCCchhhhhh
Q 037682 276 RFFDMPRSEIPKWVDDYMGQIGSVLREGGWSEPDIVEIV 314 (397)
Q Consensus 276 ~~~~~~~~~~~~Wv~~yl~~~~~~LR~GGW~e~di~Em~ 314 (397)
++.+..+...-.| |+..+-.+|++-|++ .||.+|+
T Consensus 20 G~~S~R~~~~GSw---fIq~Lc~~l~~~~~~-~dl~~il 54 (88)
T 1sc3_B 20 DNVSWRHPTMGSV---FIGRLIEHMQEYACS-CDVEEIF 54 (88)
T ss_dssp TBCCCEETTTEEH---HHHHHHHHHHHHTTT-SCHHHHH
T ss_pred CCEeeEcCCCCCH---HHHHHHHHHHHhCCc-CcHHHHH
Confidence 5555544555677 788888999998988 6899998
No 44
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=25.66 E-value=37 Score=25.53 Aligned_cols=38 Identities=29% Similarity=0.226 Sum_probs=26.2
Q ss_pred HHHHhcCCChHHHhHhhcCCCCCccccCCcccCCHHHHHHHHHHHhhh
Q 037682 347 ESLRKSGWSSEEVSDAFGFDFRPEKERKPAKKLSPELVERIGKLAESV 394 (397)
Q Consensus 347 ~sL~raGWs~edV~eal~~d~~~~~e~~~~~~~~p~~~~~i~~la~~v 394 (397)
|.=+++|-|.--|+..|.- + ..++++..+||.+.|+.+
T Consensus 14 diA~~aGVS~sTVSr~ln~--------~--~~vs~~t~~rV~~~a~~l 51 (67)
T 2l8n_A 14 DVALKAKVSTATVSRALMN--------P--DKVSQATRNRVEKAAREV 51 (67)
T ss_dssp HHHHHTTCCHHHHHHTTTC--------C--CCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcC--------C--CCCCHHHHHHHHHHHHHh
Confidence 3445667777777766631 1 248999999999998754
No 45
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=25.28 E-value=23 Score=31.62 Aligned_cols=40 Identities=8% Similarity=0.069 Sum_probs=28.7
Q ss_pred HHhcCCChHHHhHhhcCCCCCccccCCcccCCHHHHHHHH
Q 037682 349 LRKSGWSSEEVSDAFGFDFRPEKERKPAKKLSPELVERIG 388 (397)
Q Consensus 349 L~raGWs~edV~eal~~d~~~~~e~~~~~~~~p~~~~~i~ 388 (397)
|...|+|.++|++.||..-.--+.+-+..+|||+|.+.|.
T Consensus 48 L~~~G~t~eeiA~~lG~s~s~V~~~LrLl~Lp~~v~~~v~ 87 (178)
T 1r71_A 48 ELAKGKKKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFN 87 (178)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHGGGSCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344999999999999763222233356689999988875
No 46
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=24.77 E-value=41 Score=24.34 Aligned_cols=27 Identities=11% Similarity=0.245 Sum_probs=21.1
Q ss_pred HHhhHHHHhcCCChHHHhHhhcCCCCC
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGFDFRP 369 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~d~~~ 369 (397)
.++-.-..+.|+|.+|+++.+|..-..
T Consensus 5 ~~lk~~r~~~glsq~~lA~~~gis~~~ 31 (77)
T 2k9q_A 5 NELKVERIRLSLTAKSVAEEMGISRQQ 31 (77)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHH
Confidence 455566778899999999999986443
No 47
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=24.70 E-value=54 Score=24.28 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=24.4
Q ss_pred HhcCCChHHHhHhhcCCCCCcc--ccCCcccCCHHHHHHHH
Q 037682 350 RKSGWSSEEVSDAFGFDFRPEK--ERKPAKKLSPELVERIG 388 (397)
Q Consensus 350 ~raGWs~edV~eal~~d~~~~~--e~~~~~~~~p~~~~~i~ 388 (397)
.+.|||.+|+++.+|..-..-. |+. ...++.+.+.+|-
T Consensus 27 ~~~glsq~~lA~~~gis~~~is~~e~g-~~~~~~~~l~~ia 66 (92)
T 1lmb_3 27 NELGLSQESVADKMGMGQSGVGALFNG-INALNAYNAALLA 66 (92)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHTT-SSCCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC-CCCCCHHHHHHHH
Confidence 6789999999999998643322 222 2345666555443
No 48
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=23.61 E-value=58 Score=25.63 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=29.7
Q ss_pred HHhhHHHHhcCCChHHHhHhhcCCCCCcc--ccCCcccCCHHHHHHHHH
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGFDFRPEK--ERKPAKKLSPELVERIGK 389 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~d~~~~~--e~~~~~~~~p~~~~~i~~ 389 (397)
.++-....+.|||.+|+++.+|..-..-. |+ -...++.+.+.+|-+
T Consensus 24 ~~lr~~R~~~gltq~elA~~~gis~~~is~~E~-G~~~p~~~~l~~ia~ 71 (114)
T 3vk0_A 24 YNMRLFRVNKGWSQEELARQCGLDRTYVSAVER-KRWNIALSNIEKMAA 71 (114)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTT-TCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 44445567799999999999998644332 22 223467666665543
No 49
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=23.45 E-value=54 Score=25.65 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=30.7
Q ss_pred HHhhHHHHhcCCChHHHhHhhcCCCCCcc--ccCCcccCCHHHHHHHHH
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGFDFRPEK--ERKPAKKLSPELVERIGK 389 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~d~~~~~--e~~~~~~~~p~~~~~i~~ 389 (397)
+++-.-..+.|||.+|+++.+|..-..-. |+. ...++.+.+.+|-+
T Consensus 31 ~~lr~~R~~~gltq~elA~~~gis~~~is~iE~G-~~~ps~~~l~~ia~ 78 (99)
T 3g5g_A 31 FVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERN-SRNLTIKSLELIMK 78 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT-CSCCBHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCC-CCCCCHHHHHHHHH
Confidence 44555567899999999999998654433 222 24567776666543
No 50
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=23.45 E-value=36 Score=27.52 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=13.6
Q ss_pred HHHHHHHcCCCCChhH
Q 037682 71 FARAEAEFGFVFPPDL 86 (397)
Q Consensus 71 f~~IEa~fgF~FPpDl 86 (397)
+..||.+||++||++-
T Consensus 68 i~~lE~~FgI~I~~ee 83 (105)
T 2lki_A 68 ITALEEYFDFSVDDDE 83 (105)
T ss_dssp HHHHHHHHTSCCCGGG
T ss_pred HHHHHHHhCCCcCHHH
Confidence 4569999999999874
No 51
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=23.42 E-value=57 Score=23.66 Aligned_cols=45 Identities=18% Similarity=0.142 Sum_probs=29.0
Q ss_pred HHhhHHHHhcCCChHHHhHhhcCCCCCcc--ccCCcccCCHHHHHHHH
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGFDFRPEK--ERKPAKKLSPELVERIG 388 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~d~~~~~--e~~~~~~~~p~~~~~i~ 388 (397)
+++-.-..+.|||.+|+++.+|..-..-. |+ -...++.+.+.+|-
T Consensus 14 ~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~-g~~~~~~~~l~~ia 60 (82)
T 3s8q_A 14 FVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER-NSRNLTIKSLELIM 60 (82)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT-TCCCCBHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC-CCCCCCHHHHHHHH
Confidence 44555567789999999999998654433 22 22455666655543
No 52
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=23.34 E-value=47 Score=24.96 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=31.0
Q ss_pred HHhhHHHHhcCCChHHHhHhhcCCCCCcccc-CCcccCCHHHHHHHHH
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGFDFRPEKER-KPAKKLSPELVERIGK 389 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~d~~~~~e~-~~~~~~~p~~~~~i~~ 389 (397)
+++-..+.+.|+|..|+++.+|..-..-.+- +-...++++.+.+|.+
T Consensus 11 ~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~~~~i~~ 58 (94)
T 2ict_A 11 DIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSV 58 (94)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4566667788999999999999775443321 1223567776666544
No 53
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=23.08 E-value=63 Score=23.79 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=29.6
Q ss_pred HhhHHHHhcCCChHHHhHhhcCCCCCcc--ccCCcccCCHHHHHHHHH
Q 037682 344 RLSESLRKSGWSSEEVSDAFGFDFRPEK--ERKPAKKLSPELVERIGK 389 (397)
Q Consensus 344 ~~s~sL~raGWs~edV~eal~~d~~~~~--e~~~~~~~~p~~~~~i~~ 389 (397)
++-.--++.|||.+|+++.+|..-..-. |+.....++.+.+.+|-+
T Consensus 14 ~ik~~R~~~gltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~ 61 (78)
T 3qq6_A 14 RIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSA 61 (78)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 3444456789999999999998644333 222245566676666543
No 54
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=22.69 E-value=68 Score=22.17 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=21.0
Q ss_pred HHhhHHHHhcCCChHHHhHhhcCCCCC
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGFDFRP 369 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~d~~~ 369 (397)
+++-.-..+.|||.+|+++.+|..-..
T Consensus 6 ~~l~~~r~~~glsq~~lA~~~gis~~~ 32 (71)
T 1zug_A 6 ERLKKRRIALKMTQTELATKAGVKQQS 32 (71)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHH
Confidence 455556778899999999999976443
No 55
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=22.29 E-value=1.6e+02 Score=25.21 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=46.1
Q ss_pred HHHHHHHhhCCCCCchhhhhhhccC-CCCcCccccccchHHHHHHHHH-------HHHHhhHHHHhcCCChHHHhHhhcC
Q 037682 294 GQIGSVLREGGWSEPDIVEIVTVSA-SGFFEGEMVMLDNQSVLDGLLL-------KADRLSESLRKSGWSSEEVSDAFGF 365 (397)
Q Consensus 294 ~~~~~~LR~GGW~e~di~Em~~~~~-~~~~~ge~~~~d~~avl~~L~~-------~~d~~s~sL~raGWs~edV~eal~~ 365 (397)
.+|-.+|++-|..+++|++.|.--. .|+.+. +..-..++. --.++...|++-|-+.+.|.++|.-
T Consensus 35 ~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD-------~rfA~~~v~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~ 107 (162)
T 3dfg_A 35 KELNRKLQARGIEPEAAQAAVERLAGEGWQDD-------VRFAASVVRNRASSGYGPLHIRAELGTHGLDSDAVSAAMAT 107 (162)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCH-------HHHHHHHHHHHHTTTCCHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHHccccHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3778889999999999999886443 453333 332222222 1347888999999999999999864
No 56
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=22.17 E-value=93 Score=23.71 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=27.6
Q ss_pred HhcCCChHHHhHhhcCC----------------CCCccccC-CcccCCHHHHHHHHHHH
Q 037682 350 RKSGWSSEEVSDAFGFD----------------FRPEKERK-PAKKLSPELVERIGKLA 391 (397)
Q Consensus 350 ~raGWs~edV~eal~~d----------------~~~~~e~~-~~~~~~p~~~~~i~~la 391 (397)
...|+|..+|+..||.. +.+.+.++ ...+++++..+.|..+.
T Consensus 30 ~~~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~ 88 (128)
T 1pdn_C 30 AADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYK 88 (128)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHH
Confidence 35799999999998864 22222222 34578888777776654
No 57
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=21.84 E-value=78 Score=25.68 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=30.4
Q ss_pred HhhHHHHhcCCChHHHhHhhcCCCCCcc--ccCCcccCCHH--HHHHHHHHHhhh
Q 037682 344 RLSESLRKSGWSSEEVSDAFGFDFRPEK--ERKPAKKLSPE--LVERIGKLAESV 394 (397)
Q Consensus 344 ~~s~sL~raGWs~edV~eal~~d~~~~~--e~~~~~~~~p~--~~~~i~~la~~v 394 (397)
++-..-.+.|||.+||++.+|..-.--. |+.....+|.. +...+.++|+++
T Consensus 11 ~Lr~~R~~~glSq~eLA~~~gis~~~is~iE~G~~~~~p~~~~~~~~l~~iA~~L 65 (112)
T 2wus_R 11 TFRKKREERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFL 65 (112)
T ss_dssp HHHHHHHTTTCCHHHHHHHSSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCcchhHHHHHHHHHHHHh
Confidence 3334445689999999999998654432 33323333322 345566777653
No 58
>3lvy_A Carboxymuconolactone decarboxylase family; alpha-structure, structural genomics, PSI-2, protein structure initiative; 2.10A {Streptococcus mutans}
Probab=21.65 E-value=2.5e+02 Score=24.84 Aligned_cols=66 Identities=8% Similarity=0.071 Sum_probs=39.5
Q ss_pred HHHHHHHHHHh-hCCCCCchhhhhhhccCCCCcCccccccchHHHHHHHHHHH----HHhh----HHHHhcCCChHHHhH
Q 037682 291 DYMGQIGSVLR-EGGWSEPDIVEIVTVSASGFFEGEMVMLDNQSVLDGLLLKA----DRLS----ESLRKSGWSSEEVSD 361 (397)
Q Consensus 291 ~yl~~~~~~LR-~GGW~e~di~Em~~~~~~~~~~ge~~~~d~~avl~~L~~~~----d~~s----~sL~raGWs~edV~e 361 (397)
.|++-=...+| ..|.++++|..+-.....+ |+ ++|..+-.++.++ ..++ +.|+++|||-++|+|
T Consensus 102 yC~~~H~~~a~~~~G~~~e~i~a~r~~~~~~-~~------~~erA~l~~a~~lt~~~~~v~d~~~~~l~~agfsd~eive 174 (207)
T 3lvy_A 102 FCVAGHTAFSIKQIQMAPDLLEALRNATPID-DD------PKLDTLAKFTIAVINTKGRVGDEAFADFLEVGYTPENALD 174 (207)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHTCCCS-SC------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHhCCCCC-CC------HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHcCCCHHHHHH
Confidence 56666667776 8999999988876532110 22 2333322223222 2233 457788999999998
Q ss_pred hh
Q 037682 362 AF 363 (397)
Q Consensus 362 al 363 (397)
..
T Consensus 175 l~ 176 (207)
T 3lvy_A 175 VV 176 (207)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 59
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=21.37 E-value=51 Score=29.40 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=32.7
Q ss_pred HHHhhHHHHhcCCChHHHhHhhcCCCCCcccc-CCcccCCHHHHHHHHHH
Q 037682 342 ADRLSESLRKSGWSSEEVSDAFGFDFRPEKER-KPAKKLSPELVERIGKL 390 (397)
Q Consensus 342 ~d~~s~sL~raGWs~edV~eal~~d~~~~~e~-~~~~~~~p~~~~~i~~l 390 (397)
++++-..=++.|+|-|||++.+|..-.=-.-= .--.++|+|.|++|.++
T Consensus 15 ~~~I~~AK~~KGLTwe~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kLa~~ 64 (156)
T 1dw9_A 15 ADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAK 64 (156)
T ss_dssp HHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34444445678999999999999651111000 34567899999988874
No 60
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=21.35 E-value=61 Score=24.44 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=28.8
Q ss_pred HHHhhHHHHhcCCChHHHhHhhcCCCCCcccc-CCcccCCHHHHHHHH
Q 037682 342 ADRLSESLRKSGWSSEEVSDAFGFDFRPEKER-KPAKKLSPELVERIG 388 (397)
Q Consensus 342 ~d~~s~sL~raGWs~edV~eal~~d~~~~~e~-~~~~~~~p~~~~~i~ 388 (397)
.+++-.-+.+.|||.+|+++.+|..-..-..- +-....+.+.+.+|-
T Consensus 11 ~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia 58 (94)
T 2kpj_A 11 SENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALA 58 (94)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHH
Confidence 35566667788999999999999764433211 112234555554443
No 61
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=21.11 E-value=24 Score=26.45 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=13.3
Q ss_pred HHHHHHHcCCCCChh
Q 037682 71 FARAEAEFGFVFPPD 85 (397)
Q Consensus 71 f~~IEa~fgF~FPpD 85 (397)
+..||.+||++||++
T Consensus 45 v~~lE~~fgi~i~~~ 59 (80)
T 1dv5_A 45 LLELQSQFGVDAPVS 59 (80)
T ss_dssp HHHHTTTSCCCCCCS
T ss_pred HHHHHHHhCCcCCHH
Confidence 678999999999975
No 62
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=21.00 E-value=42 Score=24.82 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=13.8
Q ss_pred HHHHHHHcCCCCChhH
Q 037682 71 FARAEAEFGFVFPPDL 86 (397)
Q Consensus 71 f~~IEa~fgF~FPpDl 86 (397)
+..||++||+++|++-
T Consensus 46 ~~~le~~fgi~i~~~~ 61 (81)
T 3gzm_A 46 IMALEEKFNVTISDQD 61 (81)
T ss_dssp HHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHCCCcCHHH
Confidence 4679999999999875
No 63
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=20.98 E-value=48 Score=26.43 Aligned_cols=36 Identities=22% Similarity=0.513 Sum_probs=25.9
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHHHhhCCCCCchhhhhhh
Q 037682 276 RFFDMPRSEIPKWVDDYMGQIGSVLREGGWSEPDIVEIVT 315 (397)
Q Consensus 276 ~~~~~~~~~~~~Wv~~yl~~~~~~LR~GGW~e~di~Em~~ 315 (397)
++.+........| |+..+-.+|++-|++ .||.+|++
T Consensus 22 G~~S~R~~~~GSw---fIq~Lc~~l~~~~~~-~dl~~ilt 57 (97)
T 2ql9_B 22 GYYSWRSPGRGSW---FVQALCSILEEHGKD-LEIMQILT 57 (97)
T ss_dssp TBCCEEETTTEEH---HHHHHHHHHHHHTTT-SCHHHHHH
T ss_pred CcEeeecCCCCCe---eHHHHHHHHHHhCCC-CcHHHHHH
Confidence 4444434445667 788888999998886 68999884
No 64
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=20.82 E-value=56 Score=27.37 Aligned_cols=35 Identities=11% Similarity=0.379 Sum_probs=26.2
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHHHhhCCCCCchhhhhh
Q 037682 276 RFFDMPRSEIPKWVDDYMGQIGSVLREGGWSEPDIVEIV 314 (397)
Q Consensus 276 ~~~~~~~~~~~~Wv~~yl~~~~~~LR~GGW~e~di~Em~ 314 (397)
++.+......-.| |+..+..+|++-|++ .||.+||
T Consensus 27 G~vS~R~~~~GSw---FIQ~Lc~vl~~~~~~-~dl~~il 61 (118)
T 2xzd_B 27 GYYSWRNSKDGSW---FIQSLCAMLKQYADK-LEFMHIL 61 (118)
T ss_dssp TBCCCEETTTEEH---HHHHHHHHHHHHTTT-SCHHHHH
T ss_pred CCEeeEeCCCCCc---cHHHHHHHHHHhCCc-ccHHHHH
Confidence 5555544555677 788888899988887 6899998
No 65
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=20.49 E-value=65 Score=24.10 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=28.0
Q ss_pred HHhhHHHHhcCCChHHHhHhhcCCCCCcc--ccCCcccCCHHHHHHHH
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGFDFRPEK--ERKPAKKLSPELVERIG 388 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~d~~~~~--e~~~~~~~~p~~~~~i~ 388 (397)
.++-.-.++.|||-+|+++.+|..-..-. |+ -...++.+.+.+|-
T Consensus 17 ~~l~~~R~~~gltq~elA~~~gis~~~is~~E~-G~~~p~~~~l~~ia 63 (86)
T 3eus_A 17 QRLRQARLDAGLTQADLAERLDKPQSFVAKVET-RERRLDVIEFAKWM 63 (86)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHT-TSSCCBHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC-CCCCCCHHHHHHHH
Confidence 44555567899999999999997644332 22 12244565555443
No 66
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=20.26 E-value=45 Score=23.23 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=18.5
Q ss_pred CcccCCHHHHHHHHHHHhhhhc
Q 037682 375 PAKKLSPELVERIGKLAESVSR 396 (397)
Q Consensus 375 ~~~~~~p~~~~~i~~la~~v~r 396 (397)
-..+||+++.+++..||+.--|
T Consensus 6 ~sirl~~~l~~~l~~lA~~~~r 27 (52)
T 2gpe_A 6 MGVKLDDATRERIKSAATRIDR 27 (52)
T ss_dssp EEEEEEHHHHHHHHHHHHHTTC
T ss_pred EEEECCHHHHHHHHHHHHHHCc
Confidence 3578999999999999987554
No 67
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=20.18 E-value=83 Score=21.58 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=20.7
Q ss_pred HHhhHHHHhcCCChHHHhHhhcCCCCC
Q 037682 343 DRLSESLRKSGWSSEEVSDAFGFDFRP 369 (397)
Q Consensus 343 d~~s~sL~raGWs~edV~eal~~d~~~ 369 (397)
+++-.-+.+.|+|.+|+++.+|..-..
T Consensus 4 ~~l~~~r~~~glsq~~lA~~~gis~~~ 30 (69)
T 1r69_A 4 SRVKSKRIQLGLNQAELAQKVGTTQQS 30 (69)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHH
Confidence 344556778899999999999976443
Done!