BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037688
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 149
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 16/98 (16%)
Query: 17 LPYIIKFCKAHGVSKENEFGKGKSN-------------DELKEMLLVANYLNIKEMLDYL 63
L +I++C H K++ G G + L E++L ANYL+IK +LD
Sbjct: 49 LKKVIQWCTHH---KDDPGGSGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVT 105
Query: 64 TKTLANRIKNKSVEYIRKFFGIQTNFMPEEEEATRKES 101
KT+AN IK K+ E IRK F I+ +F EEE RKE+
Sbjct: 106 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKEN 143
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|F Chain F, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|H Chain H, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|J Chain J, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|L Chain L, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|N Chain N, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|P Chain P, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2OVP|A Chain A, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 149
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 16/98 (16%)
Query: 17 LPYIIKFCKAHGVSKENEFGKGKSN-------------DELKEMLLVANYLNIKEMLDYL 63
L +I++C H K++ G G + L E++L ANYL+IK +LD
Sbjct: 49 LKKVIQWCTHH---KDDPGGSGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVT 105
Query: 64 TKTLANRIKNKSVEYIRKFFGIQTNFMPEEEEATRKES 101
KT+AN IK K+ E IRK F I+ +F EEE RKE+
Sbjct: 106 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKEN 143
>pdb|2ASS|A Chain A, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|A Chain A, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 159
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 40/58 (68%)
Query: 44 LKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNFMPEEEEATRKES 101
L E++L ANYL+IK +LD KT+AN IK K+ E IRK F I+ +F EEE RKE+
Sbjct: 99 LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKEN 156
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|D Chain D, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
Length = 166
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 40/58 (68%)
Query: 44 LKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNFMPEEEEATRKES 101
L E++L ANYL+IK +LD KT+AN IK K+ E IRK F I+ +F EEE RKE+
Sbjct: 103 LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKEN 160
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 145
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 40/58 (68%)
Query: 44 LKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNFMPEEEEATRKES 101
L E++L ANYL+IK +LD KT+AN IK K+ E IRK F I+ +F EEE RKE+
Sbjct: 82 LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKEN 139
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 169
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 44 LKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNFMPEEEEATRKES 101
L E++L ANYLNIK +LD K +A I+ +S E IR+ F I +F PEEE A R+E+
Sbjct: 106 LYEIILAANYLNIKPLLDAGCKVVAEXIRGRSPEEIRRTFNIVNDFTPEEEAAIRREN 163
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|C Chain C, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 169
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 44 LKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNFMPEEEEATRKES 101
L E++L ANYLNIK +LD K +A I+ +S E IR+ F I +F PEEE A R+E+
Sbjct: 106 LYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRREN 163
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure
pdb|2P1N|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|D Chain D, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|A Chain A, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3OGK|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|A Chain A, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|C Chain C, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|E Chain E, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|G Chain G, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|I Chain I, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|K Chain K, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|M Chain M, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|O Chain O, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 160
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 19/94 (20%)
Query: 17 LPYIIKFCKAH---GVSKENEF-GKGKSNDELK---------------EMLLVANYLNIK 57
L +I++CK H SK G S+D+LK E++L ANYLNIK
Sbjct: 52 LAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIK 111
Query: 58 EMLDYLTKTLANRIKNKSVEYIRKFFGIQTNFMP 91
+LD +T+A+ IK K+ E IR F I+ +F P
Sbjct: 112 NLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTP 145
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS1|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 141
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 44 LKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNF 89
L E++L ANYL+IK +LD KT+AN IK K+ E IRK F I+ +F
Sbjct: 94 LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 139
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 133
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 44 LKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFF 83
L E++L ANYL+IK +LD KT+AN IK K+ E IRK F
Sbjct: 93 LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF 132
>pdb|3GR5|A Chain A, Periplasmic Domain Of The Outer Membrane Secretin Escc
From Enteropathogenic E.Coli (Epec)
Length = 156
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 42 DELKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNFMPE 92
+E+ ++ YL+I +L YL+ T++ + +V I F I+ +PE
Sbjct: 87 NEISRSIITPTYLDIDSLLKYLSDTISVNKNSCNVRKITTFNSIEVRGVPE 137
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 20 IIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLANRIKN----KS 75
++K C G + +E ++ +ELK++L +N++ + YL + A+ +N K
Sbjct: 72 VVKNC---GQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEPKYKV 128
Query: 76 VEYIRKFFGIQTNFMPEEEEA 96
V+ + ++ + PE +E+
Sbjct: 129 VQDTYQIMKVEGHVFPEFKES 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,931,791
Number of Sequences: 62578
Number of extensions: 105165
Number of successful extensions: 213
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 18
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)