Query 037688
Match_columns 103
No_of_seqs 104 out of 573
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:07:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v7d_A Suppressor of kinetocho 100.0 4.2E-40 1.4E-44 234.7 8.4 100 2-102 33-164 (169)
2 2p1m_A SKP1-like protein 1A; F 100.0 5.6E-39 1.9E-43 226.6 6.5 100 2-102 30-156 (160)
3 2ast_A S-phase kinase-associat 100.0 3E-36 1E-40 211.9 9.3 100 2-102 27-157 (159)
4 1fs1_B SKP1, cyclin A/CDK2-ass 100.0 9.9E-35 3.4E-39 201.2 5.9 88 2-91 28-141 (141)
5 1hv2_A Elongin C, ELC1; protei 99.4 3.4E-14 1.2E-18 92.9 0.4 53 2-56 30-99 (99)
6 1vcb_B Protein (elongin C); tu 99.4 5.8E-14 2E-18 93.9 1.2 53 2-56 43-112 (112)
7 2fnj_C Transcription elongatio 99.4 5.2E-14 1.8E-18 91.5 -0.4 53 2-56 27-96 (96)
8 4ajy_C Transcription elongatio 99.1 1.7E-11 5.9E-16 79.2 0.7 52 2-55 28-96 (97)
9 2yy9_A Zinc finger and BTB dom 97.1 0.0003 1E-08 46.7 3.3 53 17-77 73-125 (135)
10 1buo_A POZ domain, protein (pr 96.3 0.012 4.2E-07 37.8 6.2 47 17-71 75-121 (121)
11 3m5b_A Zinc finger and BTB dom 96.1 0.0059 2E-07 39.7 4.1 45 17-69 73-117 (119)
12 3htm_A Speckle-type POZ protei 96.0 0.03 1E-06 37.5 7.1 57 17-81 86-142 (172)
13 2vkp_A BTB/POZ domain-containi 95.9 0.02 6.8E-07 35.7 5.8 46 17-70 63-108 (109)
14 2q81_A MIZ-1 protein; BTB/POZ 95.9 0.015 5.1E-07 37.3 5.1 44 17-68 74-117 (119)
15 2vpk_A Myoneurin; transcriptio 95.6 0.029 9.9E-07 35.6 5.4 44 17-68 72-115 (116)
16 2if5_A Zinc finger and BTB dom 95.5 0.039 1.3E-06 35.1 5.8 43 17-67 77-119 (120)
17 2z8h_A Transcription regulator 95.4 0.011 3.8E-07 38.9 3.2 48 17-72 87-134 (138)
18 1r29_A B-cell lymphoma 6 prote 95.4 0.031 1.1E-06 36.0 5.3 45 17-69 81-125 (127)
19 4eoz_A Speckle-type POZ protei 95.3 0.018 6E-07 37.6 3.9 60 17-87 77-136 (145)
20 3hve_A Gigaxonin; ubiquitin, c 95.3 0.044 1.5E-06 39.3 6.1 55 17-79 85-139 (256)
21 3i3n_A Kelch-like protein 11; 95.2 0.044 1.5E-06 39.9 6.1 56 17-80 93-148 (279)
22 3b84_A Zinc finger and BTB dom 95.1 0.024 8.2E-07 36.3 3.9 45 17-69 72-116 (119)
23 2ppi_A Gigaxonin; BTB domain, 94.0 0.04 1.4E-06 36.7 3.2 43 17-67 101-143 (144)
24 3hqi_A Speckle-type POZ protei 93.3 0.23 7.8E-06 36.4 6.5 57 17-81 226-282 (312)
25 3ga1_A Nucleus accumbens-assoc 92.8 0.022 7.7E-07 36.9 0.3 45 17-69 82-126 (129)
26 3ohu_A Transcription regulator 89.3 0.015 5.2E-07 37.4 -3.2 41 17-65 83-123 (125)
27 2ihc_A Transcription regulator 89.1 0.035 1.2E-06 35.8 -1.6 43 17-67 80-122 (124)
28 3fkc_A Transcriptional regulat 84.2 0.92 3.1E-05 28.7 3.2 37 17-61 78-115 (116)
29 2k9n_A MYB24; R2R3 domain, DNA 83.0 1.8 6.2E-05 27.3 4.3 35 65-99 25-66 (107)
30 1gv2_A C-MYB, MYB proto-oncoge 80.9 1.6 5.3E-05 27.3 3.3 36 64-99 27-69 (105)
31 1h8a_C AMV V-MYB, MYB transfor 78.1 4.1 0.00014 26.4 4.8 36 64-99 50-92 (128)
32 1wgx_A KIAA1903 protein; MYB D 77.1 1.9 6.4E-05 26.2 2.7 20 65-84 35-54 (73)
33 4eef_G F-HB80.4, designed hema 74.2 0.79 2.7E-05 28.2 0.4 43 41-87 27-69 (74)
34 3osg_A MYB21; transcription-DN 73.4 5.5 0.00019 25.8 4.5 36 64-99 33-75 (126)
35 2cqq_A RSGI RUH-037, DNAJ homo 72.5 3 0.0001 25.0 2.8 19 65-84 35-53 (72)
36 3zqc_A MYB3; transcription-DNA 72.4 2.5 8.5E-05 27.6 2.6 35 65-99 26-67 (131)
37 3drz_A BTB/POZ domain-containi 69.6 11 0.00039 23.5 5.2 46 17-69 61-106 (107)
38 1ug2_A 2610100B20RIK gene prod 67.3 4 0.00014 26.0 2.6 20 65-84 59-78 (95)
39 1h8a_C AMV V-MYB, MYB transfor 66.4 3.3 0.00011 26.8 2.1 33 67-99 1-40 (128)
40 1x41_A Transcriptional adaptor 66.0 5.3 0.00018 22.6 2.8 20 65-84 32-51 (60)
41 1h89_C C-MYB, MYB proto-oncoge 65.6 7.1 0.00024 26.1 3.8 36 64-99 81-123 (159)
42 2cjj_A Radialis; plant develop 64.1 4.9 0.00017 25.3 2.5 21 64-84 34-54 (93)
43 2f6h_X Myosin-2, type V myosin 62.9 9.8 0.00033 29.7 4.6 60 17-84 266-325 (419)
44 2yus_A SWI/SNF-related matrix- 62.7 6.2 0.00021 23.9 2.8 21 64-84 40-60 (79)
45 2cqr_A RSGI RUH-043, DNAJ homo 62.3 3.5 0.00012 24.8 1.5 21 64-84 44-64 (73)
46 2eqr_A N-COR1, N-COR, nuclear 61.5 6.3 0.00021 22.5 2.5 20 65-84 35-54 (61)
47 2qq4_A Iron-sulfur cluster bio 60.9 9.4 0.00032 25.3 3.7 37 48-84 54-91 (138)
48 1xjs_A NIFU-like protein; SR17 58.7 11 0.00036 25.4 3.7 37 48-84 56-93 (147)
49 1h89_C C-MYB, MYB proto-oncoge 58.6 4.3 0.00015 27.2 1.7 36 64-99 29-71 (159)
50 2yum_A ZZZ3 protein, zinc fing 58.5 8.4 0.00029 22.5 2.8 20 64-83 36-55 (75)
51 3lvl_A NIFU-like protein; prot 58.4 8.9 0.0003 25.2 3.2 37 48-84 54-91 (129)
52 2elk_A SPCC24B10.08C protein; 58.2 8.9 0.00031 21.5 2.8 20 64-83 32-52 (58)
53 2jsp_A Transcriptional regulat 55.3 5.5 0.00019 25.0 1.6 19 72-90 42-60 (87)
54 1su0_B NIFU like protein ISCU; 55.2 14 0.00049 25.1 3.9 37 48-84 55-92 (159)
55 1pd7_B MAD1; PAH2, SIN3, eukar 54.9 3.9 0.00013 20.1 0.7 12 44-55 5-16 (26)
56 2lr8_A CAsp8-associated protei 59.9 2.6 8.8E-05 25.6 0.0 21 63-84 38-58 (70)
57 3g5o_A Uncharacterized protein 51.8 38 0.0013 21.3 5.3 70 17-87 20-97 (108)
58 3drx_A BTB/POZ domain-containi 48.5 45 0.0015 23.7 5.7 47 17-70 67-113 (202)
59 1guu_A C-MYB, MYB proto-oncoge 48.4 12 0.00042 20.1 2.2 20 65-84 27-46 (52)
60 2z7e_A ISCU protein, NIFU-like 48.2 11 0.00038 25.7 2.4 22 63-84 69-90 (157)
61 2kw0_A CCMH protein; oxidoredu 48.1 14 0.00048 23.2 2.7 18 66-83 48-66 (90)
62 3hm5_A DNA methyltransferase 1 48.0 25 0.00085 22.1 3.9 19 65-83 53-76 (93)
63 3mmi_A Myosin-4; globular tail 47.7 61 0.0021 25.3 6.8 57 17-84 250-308 (386)
64 2cu7_A KIAA1915 protein; nucle 47.6 16 0.00055 21.2 2.8 21 64-84 31-51 (72)
65 4eo3_A Bacterioferritin comigr 47.3 5.9 0.0002 29.5 0.9 35 45-89 246-280 (322)
66 2hl7_A Cytochrome C-type bioge 46.8 15 0.00052 22.7 2.7 18 66-83 51-69 (84)
67 3few_X Colicin S4; cell lysis, 46.6 19 0.00065 28.9 3.7 32 66-97 167-198 (505)
68 4eb5_C NIFU protein (NIFU-1); 44.3 14 0.00047 25.2 2.4 36 48-83 48-84 (153)
69 2d9a_A B-MYB, MYB-related prot 43.4 19 0.00063 20.0 2.5 21 64-84 31-51 (60)
70 1ofc_X ISWI protein; nuclear p 43.2 17 0.00059 27.5 3.0 41 39-84 113-153 (304)
71 3kf9_B MLCK2, myosin light cha 42.3 12 0.0004 17.7 1.2 13 43-55 6-18 (22)
72 1gvd_A MYB proto-oncogene prot 42.1 13 0.00046 20.0 1.7 20 65-84 27-46 (52)
73 3hr0_A COG4; conserved oligome 41.1 16 0.00056 26.8 2.5 25 74-98 238-262 (263)
74 1tc3_C Protein (TC3 transposas 40.4 34 0.0012 16.7 3.2 16 71-86 19-34 (51)
75 2iw5_B Protein corest, REST co 39.5 20 0.0007 26.3 2.8 21 64-84 155-175 (235)
76 2llk_A Cyclin-D-binding MYB-li 39.0 26 0.00087 20.9 2.8 20 64-84 45-64 (73)
77 2ftc_M Mitochondrial ribosomal 39.0 23 0.0008 22.6 2.8 21 64-84 13-33 (110)
78 2din_A Cell division cycle 5-l 38.9 24 0.00082 20.0 2.6 20 64-84 31-50 (66)
79 2dim_A Cell division cycle 5-l 38.8 24 0.0008 20.2 2.5 30 65-94 33-69 (70)
80 3htm_A Speckle-type POZ protei 38.4 33 0.0011 22.1 3.5 35 38-72 131-165 (172)
81 3tnt_A SARS coronavirus main p 38.3 33 0.0011 26.0 3.8 59 32-94 236-296 (306)
82 3d55_A Antitoxin, uncharacteri 37.8 21 0.00071 21.6 2.3 69 17-86 12-90 (91)
83 3gag_A Putative NADH dehydroge 37.2 9.9 0.00034 25.6 0.8 19 71-89 157-175 (206)
84 1x3u_A Transcriptional regulat 36.7 46 0.0016 18.6 3.6 23 65-87 23-45 (79)
85 2b67_A COG0778: nitroreductase 36.0 7.8 0.00027 26.0 0.1 19 71-89 156-174 (204)
86 1i4j_A 50S ribosomal protein L 35.9 27 0.00093 22.3 2.7 21 64-84 17-37 (110)
87 1xb4_A VPS25, hypothetical 23. 35.3 17 0.00057 26.0 1.7 14 17-30 31-44 (202)
88 2fre_A NAD(P)H-flavin oxidored 33.8 10 0.00034 25.7 0.3 35 45-89 119-153 (200)
89 3r8s_S 50S ribosomal protein L 33.1 32 0.0011 21.9 2.7 21 64-84 17-37 (110)
90 2xuv_A HDEB, 10K-L protein; un 32.8 21 0.00071 21.8 1.6 14 17-30 51-64 (79)
91 3h4o_A Nitroreductase family p 32.3 12 0.00039 25.5 0.4 34 46-89 121-154 (191)
92 1ni7_A ER75, hypothetical prot 31.6 46 0.0016 22.6 3.4 32 61-92 89-128 (155)
93 1vfr_A NAD(P)H\:FMN oxidoreduc 31.5 12 0.00041 25.2 0.4 19 71-89 164-183 (218)
94 3myf_A Sensor protein; HPT, hi 30.6 71 0.0024 20.1 4.1 37 44-80 56-92 (119)
95 3ge6_A Nitroreductase; structu 30.4 12 0.00042 25.2 0.3 18 72-89 164-182 (212)
96 3bem_A Putative NAD(P)H nitror 30.4 11 0.00039 25.6 0.2 18 72-89 169-186 (218)
97 3cuq_C Vacuolar protein-sortin 29.9 21 0.00071 24.9 1.4 14 17-30 34-47 (176)
98 2isk_A BLUB; oxidoreductase, f 29.2 14 0.00049 25.3 0.5 19 71-89 169-187 (230)
99 1b0n_B Protein (SINI protein); 29.1 27 0.00093 20.0 1.6 16 72-87 25-40 (57)
100 1j2j_B ADP-ribosylation factor 29.1 54 0.0018 18.0 2.8 20 63-82 9-28 (45)
101 3g0m_A Cysteine desulfuration 28.9 51 0.0017 21.9 3.2 28 65-92 86-121 (141)
102 1ywq_A Nitroreductase family p 28.5 17 0.00057 24.0 0.7 15 75-89 156-170 (200)
103 1nox_A NADH oxidase; flavoenzy 27.9 17 0.00058 24.2 0.7 17 73-89 159-175 (205)
104 2jpc_A SSRB; DNA binding prote 27.8 46 0.0016 17.6 2.5 18 70-87 10-27 (61)
105 2guz_B Mitochondrial import in 27.0 54 0.0019 18.9 2.8 22 74-95 1-25 (65)
106 4dn2_A Nitroreductase; structu 26.9 23 0.0008 24.1 1.3 17 73-89 157-173 (208)
107 2zjr_P 50S ribosomal protein L 26.9 42 0.0014 22.3 2.5 21 64-84 38-58 (134)
108 2guz_A Mitochondrial import in 26.3 86 0.0029 17.8 3.6 23 73-95 10-33 (71)
109 3ge5_A Putative NAD(P)H:FMN ox 25.7 18 0.0006 24.8 0.4 34 46-89 130-163 (198)
110 3of4_A Nitroreductase; structu 25.5 8 0.00027 26.6 -1.4 19 71-89 156-175 (209)
111 2yqk_A Arginine-glutamic acid 25.1 44 0.0015 18.9 2.1 19 65-83 32-51 (63)
112 1je8_A Nitrate/nitrite respons 25.1 60 0.002 18.8 2.7 18 70-87 33-50 (82)
113 2y9y_A Imitation switch protei 24.9 28 0.00096 27.2 1.5 41 39-84 126-167 (374)
114 1fse_A GERE; helix-turn-helix 24.5 75 0.0026 17.2 3.0 18 70-87 23-40 (74)
115 1ur3_M Hypothetical oxidoreduc 24.4 80 0.0027 23.1 3.9 53 47-99 251-311 (319)
116 1vq8_R 50S ribosomal protein L 24.2 54 0.0019 22.3 2.7 21 64-84 29-49 (155)
117 2km7_A Small protein A; BAME, 23.9 28 0.00097 21.7 1.1 21 67-87 24-44 (102)
118 1zx4_A P1 PARB, plasmid partit 23.7 90 0.0031 21.8 3.9 31 64-94 38-69 (192)
119 1w0t_A Telomeric repeat bindin 23.4 66 0.0023 17.2 2.5 19 65-83 26-46 (53)
120 1dj8_A HDEA, protein HNS-depen 23.4 35 0.0012 21.2 1.5 14 17-30 59-72 (89)
121 1txl_A Metal-binding protein Y 23.3 59 0.002 23.4 2.9 32 52-84 66-97 (215)
122 1go3_F DNA-directed RNA polyme 23.3 1.4E+02 0.0049 18.6 5.5 67 17-98 34-100 (107)
123 2crg_A Metastasis associated p 23.0 54 0.0018 19.0 2.2 19 65-83 31-50 (70)
124 4dyq_A Gene 1 protein; GP1, oc 22.7 67 0.0023 20.7 2.9 26 59-87 17-42 (140)
125 3qdl_A Oxygen-insensitive NADP 22.6 18 0.00062 24.6 -0.0 20 71-90 161-181 (210)
126 1yfb_A Transition state regula 22.6 32 0.0011 19.6 1.1 14 75-88 26-39 (59)
127 2dt6_A Splicing factor 3 subun 22.1 62 0.0021 18.4 2.3 24 55-80 2-25 (64)
128 2yh9_A Small protein A, BAME p 22.1 18 0.00063 21.8 -0.0 21 67-87 10-30 (88)
129 3iqt_A Signal transduction his 22.1 1.2E+02 0.0041 19.2 4.0 38 43-80 64-101 (123)
130 1m93_A Serine proteinase inhib 22.1 28 0.00096 19.3 0.7 28 61-88 24-51 (55)
131 4gac_A Alcohol dehydrogenase [ 22.0 91 0.0031 22.4 3.8 27 73-99 263-290 (324)
132 4a17_Q RPL17, 60S ribosomal pr 22.0 62 0.0021 22.7 2.7 21 64-84 31-51 (183)
133 2o8x_A Probable RNA polymerase 21.9 54 0.0018 17.7 2.0 17 71-87 29-45 (70)
134 3obc_A Pyrophosphatase; dimeri 21.9 66 0.0023 20.8 2.7 30 42-72 79-108 (118)
135 3mmy_B Nuclear pore complex pr 21.8 39 0.0013 19.4 1.3 11 71-81 38-48 (56)
136 1s1g_A Potassium voltage-gated 21.6 60 0.0021 20.9 2.4 43 17-66 64-107 (124)
137 3j21_S 50S ribosomal protein L 21.5 65 0.0022 21.8 2.7 21 64-84 32-52 (155)
138 3gr3_A Nitroreductase; structu 21.3 16 0.00055 25.1 -0.5 14 76-89 179-192 (230)
139 3hqi_A Speckle-type POZ protei 21.3 1E+02 0.0034 22.0 3.8 35 37-71 270-304 (312)
140 4gm2_A ATP-dependent CLP prote 20.9 79 0.0027 22.3 3.1 36 58-94 157-192 (205)
141 3ulq_B Transcriptional regulat 20.8 99 0.0034 18.4 3.2 18 70-87 41-58 (90)
142 4ayb_F DNA-directed RNA polyme 20.7 87 0.003 19.9 3.0 71 16-99 33-105 (113)
143 3qwd_A ATP-dependent CLP prote 20.5 1.1E+02 0.0036 21.3 3.7 34 61-95 148-181 (203)
144 2ltp_A Nuclear receptor corepr 25.8 21 0.00073 21.7 0.0 21 64-84 38-58 (89)
145 2r01_A Nitroreductase family p 20.3 22 0.00076 24.2 0.1 17 73-89 137-153 (210)
146 4gie_A Prostaglandin F synthas 20.0 1.1E+02 0.0036 22.0 3.7 27 73-99 243-270 (290)
No 1
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=100.00 E-value=4.2e-40 Score=234.68 Aligned_cols=100 Identities=40% Similarity=0.596 Sum_probs=89.0
Q ss_pred CCCCCCCCC-----C--CccCc-------HHHHHHHHHhcCCc----------------c--hhhcccCCchhHHHHHHH
Q 037688 2 SSMSDDTSE-----D--MVVPQ-------LPYIIKFCKAHGVS----------------K--ENEFGKGKSNDELKEMLL 49 (103)
Q Consensus 2 ~~m~e~~~~-----~--~~IPl-------L~~Vie~c~~h~~~----------------k--D~~F~~~~~~~~L~~li~ 49 (103)
++|+++.+. + ++||+ |++|++||+||+.+ + |++|+++ ++++||+|+.
T Consensus 33 k~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~v-d~~~LfeLi~ 111 (169)
T 3v7d_A 33 KNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKV-DQEMLYEIIL 111 (169)
T ss_dssp HHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCS-CHHHHHHHHH
T ss_pred HHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcC-CHHHHHHHHH
Confidence 357776543 3 68888 99999999999863 1 8999998 9999999999
Q ss_pred hhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCChHHHHHHhhhhC
Q 037688 50 VANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNFMPEEEEATRKESF 102 (103)
Q Consensus 50 AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR~~f~I~~d~t~eee~~i~~e~~ 102 (103)
|||||+|++|+++||++||++|+||||||||++|||++|||||||++||+||+
T Consensus 112 AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir~en~ 164 (169)
T 3v7d_A 112 AANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENE 164 (169)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHHTTC-
T ss_pred HHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999985
No 2
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=100.00 E-value=5.6e-39 Score=226.57 Aligned_cols=100 Identities=43% Similarity=0.650 Sum_probs=64.6
Q ss_pred CCCCCCCCCCCccCc-------HHHHHHHHHhcCCc------------------c--hhhcccCCchhHHHHHHHhhhhh
Q 037688 2 SSMSDDTSEDMVVPQ-------LPYIIKFCKAHGVS------------------K--ENEFGKGKSNDELKEMLLVANYL 54 (103)
Q Consensus 2 ~~m~e~~~~~~~IPl-------L~~Vie~c~~h~~~------------------k--D~~F~~~~~~~~L~~li~AA~yL 54 (103)
|+|+++.+.+++||+ |++||+||.+|+.+ + |++|+++ +.++||+|+.|||||
T Consensus 30 k~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~v-d~~~l~eLi~AAnyL 108 (160)
T 2p1m_A 30 AHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKI-DQATLFELILAANYL 108 (160)
T ss_dssp C------------CCTTSCHHHHHHHHHC-------------------------------------------CHHHHHHT
T ss_pred HHHHHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 678988777788998 99999999999852 1 8999997 999999999999999
Q ss_pred chHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCChHHHHHHhhhhC
Q 037688 55 NIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNFMPEEEEATRKESF 102 (103)
Q Consensus 55 ~I~~Ll~l~~~~vA~~i~gKt~eeiR~~f~I~~d~t~eee~~i~~e~~ 102 (103)
+|++|+++||++||++|+||||||||++|||++|||||||++||+||+
T Consensus 109 ~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~~ir~en~ 156 (160)
T 2p1m_A 109 NIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQ 156 (160)
T ss_dssp TCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999984
No 3
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=100.00 E-value=3e-36 Score=211.92 Aligned_cols=100 Identities=43% Similarity=0.612 Sum_probs=89.9
Q ss_pred CCCCCCCC-CC----CccCc-------HHHHHHHHHhcCCc-----------------c--hhhcccCCchhHHHHHHHh
Q 037688 2 SSMSDDTS-ED----MVVPQ-------LPYIIKFCKAHGVS-----------------K--ENEFGKGKSNDELKEMLLV 50 (103)
Q Consensus 2 ~~m~e~~~-~~----~~IPl-------L~~Vie~c~~h~~~-----------------k--D~~F~~~~~~~~L~~li~A 50 (103)
|+|+++.+ .+ ++||+ |++|++||.+|+.+ + |++|+++ +.+.|++|+.|
T Consensus 27 ~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~i-d~~~l~eLl~A 105 (159)
T 2ast_A 27 KTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKV-DQGTLFELILA 105 (159)
T ss_dssp HHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTCS-CHHHHHHHHHH
T ss_pred HHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHcC-CHHHHHHHHHH
Confidence 46888732 32 68888 99999999999933 1 8899997 99999999999
Q ss_pred hhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCChHHHHHHhhhhC
Q 037688 51 ANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNFMPEEEEATRKESF 102 (103)
Q Consensus 51 A~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR~~f~I~~d~t~eee~~i~~e~~ 102 (103)
||||+|++|+++||++||++|+||||+|||++|||++|||||||++||+||+
T Consensus 106 AnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~eEe~~ir~en~ 157 (159)
T 2ast_A 106 ANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQ 157 (159)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTTHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999985
No 4
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=100.00 E-value=9.9e-35 Score=201.18 Aligned_cols=88 Identities=41% Similarity=0.579 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCccCc-------HHHHHHHHHhcCCc-----------------c--hhhcccCCchhHHHHHHHhhhhhc
Q 037688 2 SSMSDDTSEDMVVPQ-------LPYIIKFCKAHGVS-----------------K--ENEFGKGKSNDELKEMLLVANYLN 55 (103)
Q Consensus 2 ~~m~e~~~~~~~IPl-------L~~Vie~c~~h~~~-----------------k--D~~F~~~~~~~~L~~li~AA~yL~ 55 (103)
|+|+++.+ +++||+ |++|++||++|+++ + |++|+++ +.+.||+|+.|||||+
T Consensus 28 k~ml~~~~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~v-d~~~l~eLi~AAnyL~ 105 (141)
T 1fs1_B 28 KTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKV-DQGTLFELILAANYLD 105 (141)
T ss_dssp HHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhC-CHHHHHHHHHHHHHHh
Confidence 35777655 678998 99999999999943 1 8999997 9999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCh
Q 037688 56 IKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNFMP 91 (103)
Q Consensus 56 I~~Ll~l~~~~vA~~i~gKt~eeiR~~f~I~~d~t~ 91 (103)
|++|+++||++||++|+||||||||++|||++||||
T Consensus 106 I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~tp 141 (141)
T 1fs1_B 106 IKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE 141 (141)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHTC-------
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCC
Confidence 999999999999999999999999999999999997
No 5
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=99.39 E-value=3.4e-14 Score=92.91 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=41.8
Q ss_pred CCCCCCCC--CCCccCc-------HHHHHHHHHhcCCcc--------hhhcccCCchhHHHHHHHhhhhhch
Q 037688 2 SSMSDDTS--EDMVVPQ-------LPYIIKFCKAHGVSK--------ENEFGKGKSNDELKEMLLVANYLNI 56 (103)
Q Consensus 2 ~~m~e~~~--~~~~IPl-------L~~Vie~c~~h~~~k--------D~~F~~~~~~~~L~~li~AA~yL~I 56 (103)
|+|+++.+ .+++||+ |+||++||+||+++. -.+| ++ ++++||+|+.|||||+|
T Consensus 30 k~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w-~v-d~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 30 KAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF-EI-PTEMSLELLLAADYLSI 99 (99)
T ss_dssp HHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC-CC-CHHHHHHHHHHHHHHCC
T ss_pred HHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCc-cC-CHHHHHHHHHHHHHhCc
Confidence 45777633 2368998 999999999999652 1245 66 99999999999999997
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=99.38 E-value=5.8e-14 Score=93.86 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=41.8
Q ss_pred CCCCCCCCC-----CCccCc-------HHHHHHHHHhcCCcc-----hhhcccCCchhHHHHHHHhhhhhch
Q 037688 2 SSMSDDTSE-----DMVVPQ-------LPYIIKFCKAHGVSK-----ENEFGKGKSNDELKEMLLVANYLNI 56 (103)
Q Consensus 2 ~~m~e~~~~-----~~~IPl-------L~~Vie~c~~h~~~k-----D~~F~~~~~~~~L~~li~AA~yL~I 56 (103)
|+||++.+. +++||+ |+||++||+||+.+. -.+| ++ ++++||+|+.|||||+|
T Consensus 43 k~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w-~v-d~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 43 KAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF-PI-APEIALELLMAANFLDC 112 (112)
T ss_dssp HHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCC-CC-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCc-cc-CHHHHHHHHHHHHHhCc
Confidence 468887543 258998 999999999999641 2356 66 99999999999999997
No 7
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=99.36 E-value=5.2e-14 Score=91.48 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=41.2
Q ss_pred CCCCCCCCC-----CCccCc-------HHHHHHHHHhcCCcc-----hhhcccCCchhHHHHHHHhhhhhch
Q 037688 2 SSMSDDTSE-----DMVVPQ-------LPYIIKFCKAHGVSK-----ENEFGKGKSNDELKEMLLVANYLNI 56 (103)
Q Consensus 2 ~~m~e~~~~-----~~~IPl-------L~~Vie~c~~h~~~k-----D~~F~~~~~~~~L~~li~AA~yL~I 56 (103)
|+|+++.+. +++||+ |+||++||++|++++ -.+| ++ ++++||+|+.|||||+|
T Consensus 27 k~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w-~v-d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 27 KAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF-PI-APEIALELLMAANFLDC 96 (96)
T ss_dssp HHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCC-CC-CTTTHHHHHHHHHHHTC
T ss_pred HHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCc-cc-CHHHHHHHHHHHHHhCc
Confidence 467776532 258998 999999999999542 2356 66 99999999999999997
No 8
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.07 E-value=1.7e-11 Score=79.22 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=39.2
Q ss_pred CCCCCCCCC-----CCccCc-------HHHHHHHHHhcCCcc-----hhhcccCCchhHHHHHHHhhhhhc
Q 037688 2 SSMSDDTSE-----DMVVPQ-------LPYIIKFCKAHGVSK-----ENEFGKGKSNDELKEMLLVANYLN 55 (103)
Q Consensus 2 ~~m~e~~~~-----~~~IPl-------L~~Vie~c~~h~~~k-----D~~F~~~~~~~~L~~li~AA~yL~ 55 (103)
|+|+++.+. +++||+ |++|++||.||+.+. =.+| ++ +.+.+++|+.|||||+
T Consensus 28 k~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~-~i-~~~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 28 KAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF-PI-APEIALELLMAANFLD 96 (97)
T ss_dssp HHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCC-CC-CGGGHHHHHHHHHHHT
T ss_pred HHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcC-cC-CHHHHHHHHHHHhhhC
Confidence 457776432 467887 999999999997642 1244 46 8999999999999998
No 9
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=97.14 E-value=0.0003 Score=46.68 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVE 77 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~e 77 (103)
++.+++|+-... +.. +.+.+.+|+.||++|+|+.|.+.|++.+...+.|+++.
T Consensus 73 f~~lL~fiYtg~-------~~i-~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~~ 125 (135)
T 2yy9_A 73 FGLLLDFFYTGH-------LAL-TSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQS 125 (135)
T ss_dssp HHHHHHHHHHSC-------CCC-CTTTHHHHHHHHHHTTCHHHHHHHHHCCC---------
T ss_pred HHHHHHHHhCCC-------CCC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCCC
Confidence 899999987643 344 66789999999999999999999999999988887754
No 10
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=96.29 E-value=0.012 Score=37.76 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHh
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLANRI 71 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i 71 (103)
++.+++|+-.-. +.. +.+.+.+|+.||+++++++|.+.|++.+...|
T Consensus 75 f~~ll~~~Ytg~-------~~~-~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 75 FQQILEYAYTAT-------LQA-KAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp HHHHHHHHHHSC-------CCC-CGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcCCC-------cCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 888999886633 334 66889999999999999999999999987754
No 11
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=96.14 E-value=0.0059 Score=39.75 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLAN 69 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~ 69 (103)
++.+++|+-.-. +.. +.+.+.+|+.||++|+|+.|.+.|++++.+
T Consensus 73 f~~ll~fiYtg~-------~~i-~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 73 FAQLLNFVYGES-------VEL-QPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHHTTCC-------EEE-CGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHHcCCC-------cCc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 888888875422 344 678899999999999999999999998755
No 12
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=95.99 E-value=0.03 Score=37.47 Aligned_cols=57 Identities=9% Similarity=0.112 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRK 81 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR~ 81 (103)
++.+++|+-... +.. +.+.+.+|+.+|++++++.|.+.|.+.+...+...++-++..
T Consensus 86 f~~~l~~~Yt~~-------~~~-~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~ 142 (172)
T 3htm_A 86 FKEMMCFIYTGK-------APN-LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI 142 (172)
T ss_dssp HHHHHHHHHHSC-------CTT-GGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHH
T ss_pred HHHHHHHHhCCC-------CCC-cHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 888899886533 233 667899999999999999999999999998877777665543
No 13
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=95.95 E-value=0.02 Score=35.74 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLANR 70 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~ 70 (103)
++.+++|+-.-. +.. +.+.+.+|+.+|+++++++|.+.|++.+...
T Consensus 63 f~~~l~~iYt~~-------~~~-~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 63 FLILLKYMYSDE-------IDL-EADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp HHHHHHHHHHCC-------CCC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-------ccC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 888888876532 334 6688999999999999999999999998764
No 14
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=95.89 E-value=0.015 Score=37.32 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLA 68 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA 68 (103)
++.+++|+-.-. +.. +.+.+.+|+.||++|++++|.+.|++.++
T Consensus 74 f~~ll~~~Ytg~-------~~i-~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 74 LGQVLEFMYTAK-------LSL-SPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHHHHSC-------CCC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCC-------Ccc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 888888886533 334 66789999999999999999999998874
No 15
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=95.56 E-value=0.029 Score=35.56 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLA 68 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA 68 (103)
++.+++|+-.-. +.. +.+.+.+|+.||++|++++|.+.|++.+.
T Consensus 72 f~~ll~~~Yt~~-------~~~-~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 72 FQKLLEFIYTGT-------LNL-DSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HHHHHHHHHHSC-------CCC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC-------ccc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 899999987633 334 66789999999999999999999998763
No 16
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=95.46 E-value=0.039 Score=35.06 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTL 67 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~v 67 (103)
++.+++|+-.-. +.. +.+.+.+|+.||+++++++|.+.|.+.+
T Consensus 77 f~~ll~~~Yt~~-------~~~-~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 77 LTALMDFAYTAT-------LTV-STANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHHHSC-------CCC-CGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-------Ccc-CHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 888888886533 334 6688999999999999999999998765
No 17
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=95.43 E-value=0.011 Score=38.92 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHhc
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLANRIK 72 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~ 72 (103)
++.+++|+-.-. +.. +.+.+.+|+.||++|+++.|.+.|++.+...+.
T Consensus 87 ~~~lL~~~Ytg~-------~~i-~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~ 134 (138)
T 2z8h_A 87 FEPLIQFAYTAK-------LIL-SKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFL 134 (138)
T ss_dssp HHHHHHHHHHSC-------CCC-CTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCS
T ss_pred HHHHHHHhcCCC-------ccc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 888999987633 334 667899999999999999999999998876554
No 18
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=95.42 E-value=0.031 Score=35.99 Aligned_cols=45 Identities=13% Similarity=0.243 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLAN 69 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~ 69 (103)
++.+++|+-.-. +.. +.+.+.+|+.||++|+++.|.+.|.+.+..
T Consensus 81 f~~ll~~~Ytg~-------~~~-~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 81 FNILLDFMYTSR-------LNL-REGNIMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp HHHHHHHHHHSC-------CCC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCC-------cCc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 899999986533 334 668899999999999999999999988753
No 19
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=95.32 E-value=0.018 Score=37.56 Aligned_cols=60 Identities=7% Similarity=0.127 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCC
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQT 87 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR~~f~I~~ 87 (103)
++.+++|+-... +.. +.+.+.+|+.+|+++++++|.+.|++.+...+...+ .-.++.+..
T Consensus 77 ~~~~l~~~Y~~~-------~~~-~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n---~~~~l~~A~ 136 (145)
T 4eoz_A 77 FKEMMCFIYTGK-------APN-LDKMADDLLAAADKYALERLKVMCEDALCSNLSVEN---AAEILILAD 136 (145)
T ss_dssp HHHHHHHHHHSC-------CTT-GGGTHHHHHHHHHHTTCHHHHHHHHCC---------------------
T ss_pred HHHHHHhhccCc-------cCC-cHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHH---HHHHHHHHH
Confidence 888888886533 233 667889999999999999999999998877654433 334444443
No 20
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=95.26 E-value=0.044 Score=39.28 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYI 79 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eei 79 (103)
++.+++|+-.-. +.. +.+.+.+|+.||++|++++|.+.|++.+...+.-.+.-.+
T Consensus 85 f~~ll~~~Yt~~-------~~i-~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i 139 (256)
T 3hve_A 85 MREILDYIFSGQ-------IRL-NEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGI 139 (256)
T ss_dssp HHHHHHHHHHSC-------CCC-C-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHH
T ss_pred HHHHHhhccCCC-------Ccc-cHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHH
Confidence 999999987633 334 6678999999999999999999999999887765554444
No 21
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=95.20 E-value=0.044 Score=39.85 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIR 80 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR 80 (103)
++.+++|+-.-. +.. +.+.+.+|+.||++|++++|.+.|+..+...+...+.-.+.
T Consensus 93 f~~ll~~~Ytg~-------~~i-~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~ 148 (279)
T 3i3n_A 93 VEAVIEYMYTGR-------IRV-STGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH 148 (279)
T ss_dssp HHHHHHHHHHSE-------EEE-ETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHH
T ss_pred HHHHHHhhCcCC-------ccc-CHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHH
Confidence 999999987632 334 66789999999999999999999999999887776665553
No 22
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=95.08 E-value=0.024 Score=36.33 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLAN 69 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~ 69 (103)
++.+++|+-.-. +.. +.+.+.+|+.||++|++++|.+.|++.+..
T Consensus 72 f~~ll~~iYtg~-------~~~-~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 72 FGLLLDFFYTGH-------LAL-TSGNRDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHHHHHSC-------CCC-CTTTHHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHHHcCCC-------Ccc-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 888999986533 334 667799999999999999999999987643
No 23
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=94.04 E-value=0.04 Score=36.67 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTL 67 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~v 67 (103)
++.+++|+-.-. +.. +.+.+.+|+.||++|++++|.+.|++.+
T Consensus 101 f~~lL~fiYtg~-------~~i-~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 101 MREILDYIFSGQ-------IRL-NEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp HHHHHHHHTTSC-------CCC-CTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHhCCC-------CCC-CHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 888888875422 334 6788999999999999999999998753
No 24
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=93.31 E-value=0.23 Score=36.43 Aligned_cols=57 Identities=9% Similarity=0.112 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRK 81 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR~ 81 (103)
++.+++|+-.-. +.. ..+.+.+|+.||+++++++|...|...+...+...++-++..
T Consensus 226 f~~~L~~iYt~~-------~~~-~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~ 282 (312)
T 3hqi_A 226 FKEMMCFIYTGK-------APN-LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI 282 (312)
T ss_dssp HHHHHHHHHHSC-------CTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHH
T ss_pred HHHHHHhhcCCC-------CCC-hHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 778888875522 223 457889999999999999999999999987776666655533
No 25
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=92.79 E-value=0.022 Score=36.90 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLAN 69 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~ 69 (103)
++.+++|+-.-. +.. +.+.+.+|+.||++|+|++|.+.|++.+..
T Consensus 82 f~~ll~~iYtg~-------~~i-~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~ 126 (129)
T 3ga1_A 82 FQQILSFCYTGR-------LSM-NVGDQDLLMYTAGFLQIQEIMEKGTEFFLK 126 (129)
T ss_dssp HHHHHHHHHHSE-------EEC-CTTTHHHHHHHHHHTTBTTSSCC-------
T ss_pred HHHHHHHHhCCc-------ccc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888889886522 344 667899999999999999999999987754
No 26
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=89.28 E-value=0.015 Score=37.39 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTK 65 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~ 65 (103)
++.+++|+-.-. +.. +.+.+.+|+.||++|+|+.|.+.|++
T Consensus 83 f~~~l~~iYtg~-------~~~-~~~~v~~ll~~A~~l~i~~L~~~C~~ 123 (125)
T 3ohu_A 83 FGPLLQFAYTAK-------LLL-SRENIREVIRCAEFLRMHNLEDSCFS 123 (125)
T ss_dssp HHHHHHHHTTSE-------EEE-CTTTHHHHHHHHHHHTBSSCTTSSCC
T ss_pred HHHHHHhHcCCc-------eEE-CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 888999875421 334 66789999999999999999988764
No 27
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=89.11 E-value=0.035 Score=35.81 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTL 67 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~v 67 (103)
++.+++|+-.-. +.. +.+.+.+|+.||++|++++|.+.|++.+
T Consensus 80 f~~lL~~iYtg~-------~~i-~~~~v~~ll~~A~~~~~~~L~~~C~~~l 122 (124)
T 2ihc_A 80 FEPLIQFAYTAK-------LIL-SKENVDEVCKCVEFLSVHNIEESCFQFL 122 (124)
T ss_dssp HHHHHHHHHHSE-------EEE-ETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred HHHHHHHhcCCC-------ccc-CHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 888899886522 333 5678999999999999999999988654
No 28
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=84.19 E-value=0.92 Score=28.68 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCcchhhcc-cCCchhHHHHHHHhhhhhchHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFG-KGKSNDELKEMLLVANYLNIKEMLD 61 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~-~~~~~~~L~~li~AA~yL~I~~Ll~ 61 (103)
++.+++|+-.-. + .. +.+.+.+|+.||++|+|++|.+
T Consensus 78 f~~~l~~~Ytg~-------~~~~-~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 78 FAEILNYIYSSK-------IVRV-RSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHTTSC-------CCSC-CHHHHHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHhhcCCC-------cCCC-CHHHHHHHHHHHHHhCccccCc
Confidence 888888875422 3 33 7788999999999999999875
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=83.03 E-value=1.8 Score=27.32 Aligned_cols=35 Identities=11% Similarity=0.258 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCHHHHHHHhC------CC-CCCChHHHHHHhh
Q 037688 65 KTLANRIKNKSVEYIRKFFG------IQ-TNFMPEEEEATRK 99 (103)
Q Consensus 65 ~~vA~~i~gKt~eeiR~~f~------I~-~d~t~eee~~i~~ 99 (103)
..||..+.|+|+.+.|+.+. |. ..+|+||++.+.+
T Consensus 25 ~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~ 66 (107)
T 2k9n_A 25 IRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQ 66 (107)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHH
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHH
Confidence 56888889999999999864 33 3699999988765
No 30
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=80.86 E-value=1.6 Score=27.33 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCHHHHHHHhC------CC-CCCChHHHHHHhh
Q 037688 64 TKTLANRIKNKSVEYIRKFFG------IQ-TNFMPEEEEATRK 99 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~------I~-~d~t~eee~~i~~ 99 (103)
=..||..+.|+|+.++|..+. +. ..+|+||++.+.+
T Consensus 27 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 69 (105)
T 1gv2_A 27 WSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 69 (105)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHH
T ss_pred HHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHH
Confidence 357888889999999999874 22 3699999988865
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=78.06 E-value=4.1 Score=26.35 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCHHHHHHHhC------CC-CCCChHHHHHHhh
Q 037688 64 TKTLANRIKNKSVEYIRKFFG------IQ-TNFMPEEEEATRK 99 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~------I~-~d~t~eee~~i~~ 99 (103)
=..||..+.|+|+.++|..+. +. ..+|+||++.+.+
T Consensus 50 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 92 (128)
T 1h8a_C 50 WSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 92 (128)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHH
Confidence 467888889999999998874 22 3699999988765
No 32
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=77.14 E-value=1.9 Score=26.23 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=16.7
Q ss_pred HHHHHHhcCCCHHHHHHHhC
Q 037688 65 KTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 65 ~~vA~~i~gKt~eeiR~~f~ 84 (103)
..||..+-|||++|+++.|.
T Consensus 35 e~IA~~V~gKT~eE~~~hY~ 54 (73)
T 1wgx_A 35 SEVAAAVGSRSPEECQRKYM 54 (73)
T ss_dssp HHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 57888899999999987654
No 33
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=74.16 E-value=0.79 Score=28.17 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=28.2
Q ss_pred hhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCC
Q 037688 41 NDELKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQT 87 (103)
Q Consensus 41 ~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR~~f~I~~ 87 (103)
.+.+|+-..|..=-+-+.-. ..||..+-|||++|+++.+.++.
T Consensus 27 E~K~FE~ALa~yp~~tpdRW----ekIA~~VpGKT~eEVk~hY~~~~ 69 (74)
T 4eef_G 27 ENIAFEIALSFTNKDTPDRW----KKVAQYVKGRTPEEVKKHYELEH 69 (74)
T ss_dssp HHHHHHHHTSSSCSSCCSSS----TTTGGGSCSSCHHHHHGGGC---
T ss_pred HHHHHHHHHHHCCCCCCcHH----HHHHHHcCCCCHHHHHHHHHHhh
Confidence 45677776666544433322 46788888999999999988764
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=73.44 E-value=5.5 Score=25.78 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCHHHHHHHhC------CCC-CCChHHHHHHhh
Q 037688 64 TKTLANRIKNKSVEYIRKFFG------IQT-NFMPEEEEATRK 99 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~------I~~-d~t~eee~~i~~ 99 (103)
=..||..+.|+|+.+.|+.+. +.. .+|+||++.+.+
T Consensus 33 W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 75 (126)
T 3osg_A 33 WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQ 75 (126)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHH
Confidence 467888889999999998764 333 699999998765
No 35
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=72.49 E-value=3 Score=24.99 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=15.1
Q ss_pred HHHHHHhcCCCHHHHHHHhC
Q 037688 65 KTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 65 ~~vA~~i~gKt~eeiR~~f~ 84 (103)
..||..+ |||++|+++.+.
T Consensus 35 ~~IA~~l-gRt~~eV~~~y~ 53 (72)
T 2cqq_A 35 EKIAHEL-GRSVTDVTTKAK 53 (72)
T ss_dssp HHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHH
Confidence 4567776 899999998774
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=72.43 E-value=2.5 Score=27.61 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCHHHHHHHh------CCCC-CCChHHHHHHhh
Q 037688 65 KTLANRIKNKSVEYIRKFF------GIQT-NFMPEEEEATRK 99 (103)
Q Consensus 65 ~~vA~~i~gKt~eeiR~~f------~I~~-d~t~eee~~i~~ 99 (103)
..||..+.|+|+.+.|+.+ ++.. .+|+||++.+.+
T Consensus 26 ~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 67 (131)
T 3zqc_A 26 PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFR 67 (131)
T ss_dssp GGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHH
Confidence 4677778899999999987 4444 699999998765
No 37
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=69.62 E-value=11 Score=23.53 Aligned_cols=46 Identities=9% Similarity=0.163 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLAN 69 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~ 69 (103)
++.|+.|++.-+ +..-+.-....+...|.|.+|++|++.+-.+|..
T Consensus 61 F~~IL~~lr~g~-------l~~p~~~~~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 61 FGPVLNYLRHGK-------LVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHHSC-------CCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCe-------eCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 677777776532 1110111235678999999999999999887754
No 38
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=67.31 E-value=4 Score=26.05 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=17.3
Q ss_pred HHHHHHhcCCCHHHHHHHhC
Q 037688 65 KTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 65 ~~vA~~i~gKt~eeiR~~f~ 84 (103)
..||.++.+||++|++..|.
T Consensus 59 a~iA~~L~Nks~nqV~~RFq 78 (95)
T 1ug2_A 59 SVISQQLGNKTPVEVSHRFR 78 (95)
T ss_dssp HHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHH
Confidence 45888899999999999884
No 39
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=66.37 E-value=3.3 Score=26.81 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=11.0
Q ss_pred HHHHhcCCCHHHHHHHhC------C-CCCCChHHHHHHhh
Q 037688 67 LANRIKNKSVEYIRKFFG------I-QTNFMPEEEEATRK 99 (103)
Q Consensus 67 vA~~i~gKt~eeiR~~f~------I-~~d~t~eee~~i~~ 99 (103)
||..+.|+|+.+.|..+. + ...+|+||.+.+.+
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~ 40 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIE 40 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHH
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHH
Confidence 577888999999988764 1 23699999998875
No 40
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=66.01 E-value=5.3 Score=22.57 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=17.3
Q ss_pred HHHHHHhcCCCHHHHHHHhC
Q 037688 65 KTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 65 ~~vA~~i~gKt~eeiR~~f~ 84 (103)
..||..+.|+|+.|+|..|.
T Consensus 32 ~~Ia~~~~~Rt~~qcr~r~~ 51 (60)
T 1x41_A 32 QDVANQMCTKTKEECEKHYM 51 (60)
T ss_dssp HHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHH
Confidence 67888899999999998764
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=65.58 E-value=7.1 Score=26.07 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCHHHHHHHhC------CC-CCCChHHHHHHhh
Q 037688 64 TKTLANRIKNKSVEYIRKFFG------IQ-TNFMPEEEEATRK 99 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~------I~-~d~t~eee~~i~~ 99 (103)
-..||..+.|+|+.++|..+. +. ..+|+||++.+.+
T Consensus 81 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 123 (159)
T 1h89_C 81 WSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 123 (159)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHH
Confidence 356888899999999999874 33 3699999988765
No 42
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=64.07 E-value=4.9 Score=25.28 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 037688 64 TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~ 84 (103)
=..||..+-|||++|+|..|.
T Consensus 34 W~~IA~~vpGRT~~q~k~ry~ 54 (93)
T 2cjj_A 34 WANVARAVEGRTPEEVKKHYE 54 (93)
T ss_dssp HHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 357889999999999998875
No 43
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=62.89 E-value=9.8 Score=29.67 Aligned_cols=60 Identities=15% Similarity=0.299 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHhC
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR~~f~ 84 (103)
|..+-+||+.|.- .. ..+.|-.+.+|++.|.++.=..--...+-+.-..-||.||.+.+.
T Consensus 266 ls~Le~W~~~~~l-------~~-a~~~L~~l~Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il~ 325 (419)
T 2f6h_X 266 VTRLEEWCKTHGL-------TD-GTECLQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLIS 325 (419)
T ss_dssp HHHHHHHHHHTTC-------TT-HHHHTHHHHHHHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-------hh-HHHHHHHHHHHHHHHhhCCCchhhHHHHHHHhhcCCHHHHHHHHH
Confidence 8889999999872 22 356688899999999876522112222334446678888887764
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=62.74 E-value=6.2 Score=23.90 Aligned_cols=21 Identities=5% Similarity=0.071 Sum_probs=18.3
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 037688 64 TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~ 84 (103)
=..||..+.|+|+.|+|..|.
T Consensus 40 W~~IA~~v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 40 WNKVSEHVGSRTQDECILHFL 60 (79)
T ss_dssp HHHHHHHHSSCCHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 367888999999999999886
No 45
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=62.32 E-value=3.5 Score=24.80 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 037688 64 TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~ 84 (103)
=..||..+-|||+.|+|..|.
T Consensus 44 W~~IA~~vpGRT~~qcr~Ry~ 64 (73)
T 2cqr_A 44 WDKIARCVPSKSKEDCIARYK 64 (73)
T ss_dssp HHHHGGGCSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 467888899999999998874
No 46
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.49 E-value=6.3 Score=22.46 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=16.9
Q ss_pred HHHHHHhcCCCHHHHHHHhC
Q 037688 65 KTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 65 ~~vA~~i~gKt~eeiR~~f~ 84 (103)
..||..+.|||+.++++++-
T Consensus 35 ~~Ia~~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 35 GLIASYLERKSVPDCVLYYY 54 (61)
T ss_dssp HHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 56788899999999998763
No 47
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=60.85 E-value=9.4 Score=25.32 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=23.5
Q ss_pred HHhhhhhchHHHHHHH-HHHHHHHhcCCCHHHHHHHhC
Q 037688 48 LLVANYLNIKEMLDYL-TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 48 i~AA~yL~I~~Ll~l~-~~~vA~~i~gKt~eeiR~~f~ 84 (103)
|.-+.|-.--.-+..+ +..++.+++|||++|.+++.+
T Consensus 54 I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~ 91 (138)
T 2qq4_A 54 IADIRFQGQGCAISTASASLMTEAVKGKKVAEALELSR 91 (138)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4444444433333333 455778899999999988773
No 48
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=58.67 E-value=11 Score=25.35 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=24.0
Q ss_pred HHhhhhhchHHHHHHH-HHHHHHHhcCCCHHHHHHHhC
Q 037688 48 LLVANYLNIKEMLDYL-TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 48 i~AA~yL~I~~Ll~l~-~~~vA~~i~gKt~eeiR~~f~ 84 (103)
|..+.|-.--.-+-.+ +..++.+++|||++|.+++.+
T Consensus 56 I~d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 93 (147)
T 1xjs_A 56 VEDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSK 93 (147)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4444444443333333 455778899999999998864
No 49
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=58.62 E-value=4.3 Score=27.18 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCCHHHHHHHhC------C-CCCCChHHHHHHhh
Q 037688 64 TKTLANRIKNKSVEYIRKFFG------I-QTNFMPEEEEATRK 99 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~------I-~~d~t~eee~~i~~ 99 (103)
=..||..+.|+|+.+.|+.+. + ...+|+||.+.+.+
T Consensus 29 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 71 (159)
T 1h89_C 29 WKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIK 71 (159)
T ss_dssp --------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHH
Confidence 356888888999999998763 2 24799999998865
No 50
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.45 E-value=8.4 Score=22.55 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=17.5
Q ss_pred HHHHHHHhcCCCHHHHHHHh
Q 037688 64 TKTLANRIKNKSVEYIRKFF 83 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f 83 (103)
-..||..+.|+|+.|+|..+
T Consensus 36 W~~IA~~~~~Rt~~qcr~r~ 55 (75)
T 2yum_A 36 WQKIADELGNRTAKQVASQV 55 (75)
T ss_dssp HHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHH
Confidence 46788889999999999887
No 51
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=58.38 E-value=8.9 Score=25.17 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=23.4
Q ss_pred HHhhhhhchHHHHH-HHHHHHHHHhcCCCHHHHHHHhC
Q 037688 48 LLVANYLNIKEMLD-YLTKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 48 i~AA~yL~I~~Ll~-l~~~~vA~~i~gKt~eeiR~~f~ 84 (103)
|..+.|-.--.-+. .++..++.+++|||++|.+++.+
T Consensus 54 I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~ 91 (129)
T 3lvl_A 54 IEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKN 91 (129)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 44444444333333 34456788899999999987654
No 52
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=58.18 E-value=8.9 Score=21.51 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=16.9
Q ss_pred HHHHHHHhc-CCCHHHHHHHh
Q 037688 64 TKTLANRIK-NKSVEYIRKFF 83 (103)
Q Consensus 64 ~~~vA~~i~-gKt~eeiR~~f 83 (103)
=..||..+. |+|+.|.|..+
T Consensus 32 W~~IA~~~~~~Rt~~qcr~r~ 52 (58)
T 2elk_A 32 WADIADYVGNARTKEECRDHY 52 (58)
T ss_dssp HHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHH
Confidence 367888898 89999999876
No 53
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=55.32 E-value=5.5 Score=25.00 Aligned_cols=19 Identities=11% Similarity=0.244 Sum_probs=17.2
Q ss_pred cCCCHHHHHHHhCCCCCCC
Q 037688 72 KNKSVEYIRKFFGIQTNFM 90 (103)
Q Consensus 72 ~gKt~eeiR~~f~I~~d~t 90 (103)
-|.||+|=|+.||++.|++
T Consensus 42 hgltpeeYR~kwGlp~dyP 60 (87)
T 2jsp_A 42 HSMTPEEYREKWDLPVDYP 60 (87)
T ss_dssp TCSCHHHHHHHTTCGGGCC
T ss_pred cCCCHHHHHHHhCCCCCCc
Confidence 3999999999999999874
No 54
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=55.15 E-value=14 Score=25.07 Aligned_cols=37 Identities=8% Similarity=0.015 Sum_probs=23.8
Q ss_pred HHhhhhhchHHHHHHH-HHHHHHHhcCCCHHHHHHHhC
Q 037688 48 LLVANYLNIKEMLDYL-TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 48 i~AA~yL~I~~Ll~l~-~~~vA~~i~gKt~eeiR~~f~ 84 (103)
|..+.|-.--.-+-.+ +..++.+++|||++|.+++.+
T Consensus 55 I~d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 92 (159)
T 1su0_B 55 IEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALAD 92 (159)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4444444443333333 355778899999999998865
No 55
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=54.92 E-value=3.9 Score=20.11 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=9.5
Q ss_pred HHHHHHhhhhhc
Q 037688 44 LKEMLLVANYLN 55 (103)
Q Consensus 44 L~~li~AA~yL~ 55 (103)
+--|+.||.||.
T Consensus 5 vq~LLeAAeyLE 16 (26)
T 1pd7_B 5 IQMLLEAADYLE 16 (26)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445789999997
No 56
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=59.86 E-value=2.6 Score=25.57 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHhC
Q 037688 63 LTKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 63 ~~~~vA~~i~gKt~eeiR~~f~ 84 (103)
+...||.++ ||||+||...|.
T Consensus 38 tfa~iA~~L-nks~~QV~~RF~ 58 (70)
T 2lr8_A 38 TFAYLAAKL-DKNPNQVSERFQ 58 (70)
Confidence 456788888 999999998885
No 57
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=51.80 E-value=38 Score=21.27 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCc----c--hhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCC--CHHHHHHHhCCCC
Q 037688 17 LPYIIKFCKAHGVS----K--ENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLANRIKNK--SVEYIRKFFGIQT 87 (103)
Q Consensus 17 L~~Vie~c~~h~~~----k--D~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~gK--t~eeiR~~f~I~~ 87 (103)
|..+++-+...... + ...++=+ +.+..-.+......|..+.+.....+.++..-.|+ |.+|+++.+|+..
T Consensus 20 l~~ll~~v~~~~epViITr~G~~~aVl~-s~e~ye~l~etl~LL~~~~~~~~L~~a~~~~~~G~~~s~eev~~~lgl~~ 97 (108)
T 3g5o_A 20 LNEFVDAVSSTQDQITITKNGAPAAVLV-GADEWESLQETLYWLAQPGIRESIAEADADIASGRTYGEDEIRAEFGVPR 97 (108)
T ss_dssp HHHHHHHHHTSSCEEEEEETTEEEEEEE-EHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHTCEECHHHHHHHHTCCC
T ss_pred HHHHHHHHHhhCCcEEEEECCCCcEEEe-cHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHcCCCcCHHHHHHHhCCCc
Confidence 77788777643322 1 2233323 55666677777778888889999999888887775 8999999999876
No 58
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=48.51 E-value=45 Score=23.71 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLANR 70 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~ 70 (103)
++.|+.|.+.-+ +..-+.-....+..-|.|.+|.+|++.+-..+..+
T Consensus 67 F~~ILnyLRtG~-------L~lP~~~~~~~l~eEA~FygL~~Lv~~l~~~i~er 113 (202)
T 3drx_A 67 FGPVLNYLRHGK-------LVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRER 113 (202)
T ss_dssp HHHHHHHHHHSC-------CCCCTTSCHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCc-------cCCCCCCCHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 788888877632 11101112246889999999999999999888765
No 59
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=48.45 E-value=12 Score=20.13 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=16.9
Q ss_pred HHHHHHhcCCCHHHHHHHhC
Q 037688 65 KTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 65 ~~vA~~i~gKt~eeiR~~f~ 84 (103)
..||..+.|+|+.++|..+.
T Consensus 27 ~~Ia~~~~~Rt~~qcr~Rw~ 46 (52)
T 1guu_A 27 KVIANYLPNRTDVQCQHRWQ 46 (52)
T ss_dssp HHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 67888889999999998763
No 60
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=48.19 E-value=11 Score=25.71 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHhC
Q 037688 63 LTKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 63 ~~~~vA~~i~gKt~eeiR~~f~ 84 (103)
++..++.+++|||++|.+++.+
T Consensus 69 SaS~mte~v~Gkt~~EA~~i~~ 90 (157)
T 2z7e_A 69 VSSMLTEMVKGKPIQYALNLTY 90 (157)
T ss_dssp HHHHHHHHHTTSBHHHHHHCCH
T ss_pred HHHHHHHHHcCCcHHHHHHHHh
Confidence 4455788999999999988755
No 61
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=48.10 E-value=14 Score=23.21 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=13.2
Q ss_pred HHHHHh-cCCCHHHHHHHh
Q 037688 66 TLANRI-KNKSVEYIRKFF 83 (103)
Q Consensus 66 ~vA~~i-~gKt~eeiR~~f 83 (103)
.|-.++ .|||.+||+++|
T Consensus 48 ~Vre~l~~G~Sd~eI~~~m 66 (90)
T 2kw0_A 48 KVYELMQEGKSKKEIVDYM 66 (90)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 344444 499999999876
No 62
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=48.04 E-value=25 Score=22.10 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=14.9
Q ss_pred HHHHHHh-----cCCCHHHHHHHh
Q 037688 65 KTLANRI-----KNKSVEYIRKFF 83 (103)
Q Consensus 65 ~~vA~~i-----~gKt~eeiR~~f 83 (103)
-.||+.. .++|+|+|+..|
T Consensus 53 ~vI~DRy~~~~~~~Rt~EdLK~Ry 76 (93)
T 3hm5_A 53 VVIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp HHHHHHSCTTTSCCCCHHHHHHHH
T ss_pred eeehhhhccCCCCCCCHHHHHHHH
Confidence 3688887 478999998876
No 63
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=47.67 E-value=61 Score=25.28 Aligned_cols=57 Identities=11% Similarity=0.179 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchH--HHHHHHHHHHHHHhcCCCHHHHHHHhC
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIK--EMLDYLTKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~--~Ll~l~~~~vA~~i~gKt~eeiR~~f~ 84 (103)
|..+-+||+. . +.. ..+.|-.+.+||+.|.++ .+-|. +.+.+.-.--||.||++.+.
T Consensus 250 Ls~LEeW~~~-~-------l~~-a~~~L~~L~QA~~LLQ~~K~t~~Di--~~i~~~C~~Lsp~QL~kIL~ 308 (386)
T 3mmi_A 250 IERLVSWFEP-R-------IED-VRPNLIQIIQAVKILQLKISNLNEF--KLLFDFWYALNPAQIQAILL 308 (386)
T ss_dssp HHHHHHHHTT-T-------SSC-CGGGGHHHHHHHHHHHCCCCCHHHH--HHHHTTCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHh-c-------cHH-HHHHHHHHHHHHHHHccCCCCHHHH--HHHHHhcccCCHHHHHHHHH
Confidence 7888999977 2 233 346788999999999776 22221 11223334457777766654
No 64
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=47.62 E-value=16 Score=21.21 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 037688 64 TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~ 84 (103)
-..||..+.|+|..++|..+.
T Consensus 31 W~~Ia~~~~~Rt~~q~k~r~~ 51 (72)
T 2cu7_A 31 WTKISKLIGSRTVLQVKSYAR 51 (72)
T ss_dssp HHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 367888999999999999753
No 65
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=47.29 E-value=5.9 Score=29.55 Aligned_cols=35 Identities=9% Similarity=0.198 Sum_probs=24.9
Q ss_pred HHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCC
Q 037688 45 KEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNF 89 (103)
Q Consensus 45 ~~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR~~f~I~~d~ 89 (103)
..++.||..+|+-.. ++.|-.++++|+.|||++++
T Consensus 246 ~nl~LaA~~~GLgs~----------~~~~~~~~~v~~~L~lP~~~ 280 (322)
T 4eo3_A 246 GNLLVQATQMGLVAH----------PVAGYDPVKVKEILKIPEDH 280 (322)
T ss_dssp HHHHHHHHHTTCEEE----------EECCSCHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHcCcCEE----------EcCccCHHHHHHHcCcCCCC
Confidence 356666666665421 35577899999999999875
No 66
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=46.80 E-value=15 Score=22.67 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=13.2
Q ss_pred HHHHHh-cCCCHHHHHHHh
Q 037688 66 TLANRI-KNKSVEYIRKFF 83 (103)
Q Consensus 66 ~vA~~i-~gKt~eeiR~~f 83 (103)
.|-.++ .|||.+||+.+|
T Consensus 51 ~V~~~l~~G~sd~eI~~~~ 69 (84)
T 2hl7_A 51 QIYGQLQQGKSDGEIVDYM 69 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 344444 499999999876
No 67
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=46.62 E-value=19 Score=28.87 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=24.3
Q ss_pred HHHHHhcCCCHHHHHHHhCCCCCCChHHHHHH
Q 037688 66 TLANRIKNKSVEYIRKFFGIQTNFMPEEEEAT 97 (103)
Q Consensus 66 ~vA~~i~gKt~eeiR~~f~I~~d~t~eee~~i 97 (103)
-|-.+|.-||||||-+.+|+++|-++-+|+.-
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~k 198 (505)
T 3few_X 167 GIMEKINHKTPEEIYEALGFNKDESQRQEKAK 198 (505)
T ss_dssp HHHHHTTCCCHHHHHHHTTTTTTHHHHHHHHH
T ss_pred hHHHHhcCCCHHHHHHHhCCCccchHHHHHHH
Confidence 35556888999999999999998655444443
No 68
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=44.29 E-value=14 Score=25.20 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=22.0
Q ss_pred HHhhhhhchHHHHHH-HHHHHHHHhcCCCHHHHHHHh
Q 037688 48 LLVANYLNIKEMLDY-LTKTLANRIKNKSVEYIRKFF 83 (103)
Q Consensus 48 i~AA~yL~I~~Ll~l-~~~~vA~~i~gKt~eeiR~~f 83 (103)
|..+.|-.--.-+.. ++..++.+++|||++|.+++.
T Consensus 48 I~D~~F~g~GCais~ASaS~mtelv~GKtleEA~~i~ 84 (153)
T 4eb5_C 48 IEDIKFQTFGCAAAIATSSMATEMAKGKTIEEALKIT 84 (153)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHHTTCBHHHHTTCC
T ss_pred EEEEEEEEeCcHHHHHHHHHHHHHHcCCCHHHHHHhh
Confidence 344444443333333 445677889999999987654
No 69
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=43.43 E-value=19 Score=20.02 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 037688 64 TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~ 84 (103)
=..||..+.|+|+.++|..+.
T Consensus 31 W~~Ia~~~~~Rt~~qcr~Rw~ 51 (60)
T 2d9a_A 31 WKFLASHFPNRTDQQCQYRWL 51 (60)
T ss_dssp HHHHHHHCSSSCHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHH
Confidence 367888899999999998874
No 70
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=43.21 E-value=17 Score=27.47 Aligned_cols=41 Identities=7% Similarity=0.220 Sum_probs=30.2
Q ss_pred CchhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHhC
Q 037688 39 KSNDELKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 39 ~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR~~f~ 84 (103)
++.......+.|+.--|-.. ...||..+.|||++||++++.
T Consensus 113 W~rrdf~~Fi~a~~kyGr~~-----~~~IA~ev~~Kt~eEV~~Y~~ 153 (304)
T 1ofc_X 113 WTKRDFNQFIKANEKYGRDD-----IDNIAKDVEGKTPEEVIEYNA 153 (304)
T ss_dssp CCHHHHHHHHHHHHHHCTTC-----HHHHTTSSTTCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCHHH-----HHHHHHHhcCCCHHHHHHHHH
Confidence 46667777788866555543 356777788999999999875
No 71
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=42.34 E-value=12 Score=17.66 Aligned_cols=13 Identities=15% Similarity=-0.036 Sum_probs=9.9
Q ss_pred HHHHHHHhhhhhc
Q 037688 43 ELKEMLLVANYLN 55 (103)
Q Consensus 43 ~L~~li~AA~yL~ 55 (103)
.-|..+.|||+|-
T Consensus 6 K~f~av~Aanrl~ 18 (22)
T 3kf9_B 6 KNFIAVSAANRFK 18 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4577889999873
No 72
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=42.08 E-value=13 Score=20.02 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=17.1
Q ss_pred HHHHHHhcCCCHHHHHHHhC
Q 037688 65 KTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 65 ~~vA~~i~gKt~eeiR~~f~ 84 (103)
..||..+.|+|..++|..+.
T Consensus 27 ~~Ia~~~~~Rt~~qcr~Rw~ 46 (52)
T 1gvd_A 27 SVIAKHLKGRIGKQCRERWH 46 (52)
T ss_dssp HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 57888889999999998774
No 73
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=41.11 E-value=16 Score=26.77 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.7
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHh
Q 037688 74 KSVEYIRKFFGIQTNFMPEEEEATR 98 (103)
Q Consensus 74 Kt~eeiR~~f~I~~d~t~eee~~i~ 98 (103)
-||+|+|+..+.--||.+|+..+++
T Consensus 238 Ls~~E~r~il~lRvDf~~e~I~~l~ 262 (263)
T 3hr0_A 238 LTPAEVRQVLALRIDFRSEDIKRLR 262 (263)
T ss_dssp SCHHHHHHHHTTBTTSCHHHHHHCC
T ss_pred CCHHHHHHHHHhhccCCHHHHHhcc
Confidence 6999999999999999998887764
No 74
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=40.42 E-value=34 Score=16.73 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=13.7
Q ss_pred hcCCCHHHHHHHhCCC
Q 037688 71 IKNKSVEYIRKFFGIQ 86 (103)
Q Consensus 71 i~gKt~eeiR~~f~I~ 86 (103)
..|.|..+|-+.|||.
T Consensus 19 ~~g~s~~~IA~~lgis 34 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRS 34 (51)
T ss_dssp HTTCCHHHHHHHHTCC
T ss_pred HcCCCHHHHHHHHCcC
Confidence 4688999999999986
No 75
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=39.49 E-value=20 Score=26.27 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 037688 64 TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~ 84 (103)
-..||..+.|||+.++|.+|.
T Consensus 155 W~~IAk~VgTKT~~QcKnfY~ 175 (235)
T 2iw5_B 155 FQAISDVIGNKSVVQVKNFFV 175 (235)
T ss_dssp HHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 578999999999999999886
No 76
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=39.04 E-value=26 Score=20.86 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 037688 64 TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~ 84 (103)
=..||..+ |+|..++|..|.
T Consensus 45 W~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 45 WATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp HHHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHH
Confidence 36788889 999999999886
No 77
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=39.01 E-value=23 Score=22.56 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 037688 64 TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~ 84 (103)
+..||+.|+||++++-..++.
T Consensus 13 ~r~va~~IrG~~v~eAl~~L~ 33 (110)
T 2ftc_M 13 MWYLAKLIRGMSIDQALAQLE 33 (110)
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 356899999999999888876
No 78
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.86 E-value=24 Score=19.97 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=16.5
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 037688 64 TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~ 84 (103)
=..||. +.|+|+.++|..|.
T Consensus 31 W~~Ia~-~~gRt~~qcr~Rw~ 50 (66)
T 2din_A 31 WRTIAP-IIGRTAAQCLEHYE 50 (66)
T ss_dssp HHHHHH-HHSSCHHHHHHHHH
T ss_pred HHHHhc-ccCcCHHHHHHHHH
Confidence 367888 77999999998875
No 79
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.83 E-value=24 Score=20.25 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=22.7
Q ss_pred HHHHHHhcCCCHHHHHHHhC------CCC-CCChHHH
Q 037688 65 KTLANRIKNKSVEYIRKFFG------IQT-NFMPEEE 94 (103)
Q Consensus 65 ~~vA~~i~gKt~eeiR~~f~------I~~-d~t~eee 94 (103)
..||..+.|+|+.++|..+. |.. .+|+||+
T Consensus 33 ~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 33 SRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 67888999999999999863 232 5776653
No 80
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=38.38 E-value=33 Score=22.09 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=29.8
Q ss_pred CCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHhc
Q 037688 38 GKSNDELKEMLLVANYLNIKEMLDYLTKTLANRIK 72 (103)
Q Consensus 38 ~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~ 72 (103)
.++.+..++++..|...+.+.|.+.|.+.|+..+.
T Consensus 131 ~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 131 NLSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred hCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 34778899999999999999999999999987543
No 81
>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=38.31 E-value=33 Score=26.05 Aligned_cols=59 Identities=15% Similarity=0.203 Sum_probs=44.0
Q ss_pred hhhcccCCchhH--HHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCChHHH
Q 037688 32 ENEFGKGKSNDE--LKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNFMPEEE 94 (103)
Q Consensus 32 D~~F~~~~~~~~--L~~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR~~f~I~~d~t~eee 94 (103)
+..|-.. ..+. .++.+.|..=..+.+|+...-+-+++=..||+ |--....+++|||+|-
T Consensus 236 ~ngft~~-~~~~~~~~~~Laa~TGVsVe~lL~aI~~ll~~g~~G~~---IlG~~~leDE~Tp~~V 296 (306)
T 3tnt_A 236 KYNYEPL-TQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRT---ILGSTILEDEFTPFDV 296 (306)
T ss_dssp HTTBCCC-CHHHHHHTHHHHHHHTCCHHHHHHHHHHHHHHCCTTCC---BTTBSSCCCSCCHHHH
T ss_pred hcCCccc-cccHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCCce---eeccccccccCCHHHH
Confidence 4556444 4443 48889999999999999987776777677887 5556668888999875
No 82
>3d55_A Antitoxin, uncharacterized protein RV3357/MT3465; tetramer, toxin neutraliSer, toxin inhibitor; 2.13A {Mycobacterium tuberculosis} PDB: 3cto_A 3oei_A* 3oei_E*
Probab=37.83 E-value=21 Score=21.58 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCc----c-hhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCC-----CHHHHHHHhCCC
Q 037688 17 LPYIIKFCKAHGVS----K-ENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLANRIKNK-----SVEYIRKFFGIQ 86 (103)
Q Consensus 17 L~~Vie~c~~h~~~----k-D~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~gK-----t~eeiR~~f~I~ 86 (103)
|..+++-+...... + ...-+ +++.+..-.+....+.|..+.+..-..+.++..-.|+ +.+|+++.+|+.
T Consensus 12 l~~~l~~v~~~~epv~Itr~g~~~~-l~s~e~y~~l~et~~ll~~~~~~~~l~~a~~~~~~G~~~~~~~l~el~~~lg~~ 90 (91)
T 3d55_A 12 LFPLIEQVNTDHQPVRITSRAGDAV-LMSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREMAGGE 90 (91)
T ss_dssp HHHHHHHHHHHCCCEEEECTTCCEE-EEEHHHHHHHHHHHHHTTSHHHHHHHHHHHTC----------------------
T ss_pred HHHHHHHHHhhCCcEEEEECCCcce-eeeHHHHhhHHHHHHHHhChHHHHHHHHHHHHHHcCCCccCCCHHHHHHHhCCC
Confidence 56666666542222 1 11112 3355555566666777778888887888887766665 458999999975
No 83
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0
Probab=37.23 E-value=9.9 Score=25.61 Aligned_cols=19 Identities=5% Similarity=0.454 Sum_probs=15.3
Q ss_pred hcCCCHHHHHHHhCCCCCC
Q 037688 71 IKNKSVEYIRKFFGIQTNF 89 (103)
Q Consensus 71 i~gKt~eeiR~~f~I~~d~ 89 (103)
+.|-.++++|+.|||++++
T Consensus 157 ~~~~~~~~v~~~L~lp~~~ 175 (206)
T 3gag_A 157 MRGVDFDAIKTYLDMPNGW 175 (206)
T ss_dssp BCCSCHHHHHHHTTCCTTE
T ss_pred ecccCHHHHHHHhCcCCCc
Confidence 3456789999999998764
No 84
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=36.73 E-value=46 Score=18.58 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=17.0
Q ss_pred HHHHHHhcCCCHHHHHHHhCCCC
Q 037688 65 KTLANRIKNKSVEYIRKFFGIQT 87 (103)
Q Consensus 65 ~~vA~~i~gKt~eeiR~~f~I~~ 87 (103)
..+.-...|+|..||-+.+|++.
T Consensus 23 ~vl~l~~~g~s~~eIA~~l~is~ 45 (79)
T 1x3u_A 23 QVLSAVVAGLPNKSIAYDLDISP 45 (79)
T ss_dssp HHHHHHTTTCCHHHHHHHTTSCH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCH
Confidence 33433467999999999999864
No 85
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Probab=36.02 E-value=7.8 Score=25.99 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=15.3
Q ss_pred hcCCCHHHHHHHhCCCCCC
Q 037688 71 IKNKSVEYIRKFFGIQTNF 89 (103)
Q Consensus 71 i~gKt~eeiR~~f~I~~d~ 89 (103)
+.|-..+++++.|||+++.
T Consensus 156 ~~~~~~~~v~~~l~lp~~~ 174 (204)
T 2b67_A 156 ILGFDKSKVNEVLEIEDRF 174 (204)
T ss_dssp ECCBCHHHHHHHHTCCTTE
T ss_pred EcccCHHHHHHHhCCCCCC
Confidence 3456789999999999764
No 86
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=35.90 E-value=27 Score=22.25 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 037688 64 TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~ 84 (103)
+..||+.|+||++++-..++.
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~ 37 (110)
T 1i4j_A 17 VRLVVDLIRGKSLEEARNILR 37 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 356899999999998877765
No 87
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=35.27 E-value=17 Score=25.99 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCc
Q 037688 17 LPYIIKFCKAHGVS 30 (103)
Q Consensus 17 L~~Vie~c~~h~~~ 30 (103)
-+.|+.||+||+-.
T Consensus 31 ~~LIL~ycr~~ki~ 44 (202)
T 1xb4_A 31 IDIISQYCKTKKIW 44 (202)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCee
Confidence 46789999999976
No 88
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1
Probab=33.83 E-value=10 Score=25.67 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=23.1
Q ss_pred HHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCC
Q 037688 45 KEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNF 89 (103)
Q Consensus 45 ~~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR~~f~I~~d~ 89 (103)
..|+.||..||+-.- .+.|-..+++++.|||++++
T Consensus 119 ~nl~LaA~~~Glgs~----------~~~~~~~~~~~~~l~lp~~~ 153 (200)
T 2fre_A 119 FSLAMQAHLLGYHAH----------GMGGIFKDRIVEKLDIPDGF 153 (200)
T ss_dssp HHHHHHHHHTTCEEE----------EECCBCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHHCCccee----------eEcccCHHHHHHHcCCCCCc
Confidence 345555555555431 24466889999999999764
No 89
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=33.15 E-value=32 Score=21.90 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 037688 64 TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~ 84 (103)
+..||+.|+|+++++-..++.
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~ 37 (110)
T 3r8s_S 17 VRLVADLIRGKKVSQALDILT 37 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHh
Confidence 356899999999998887776
No 90
>2xuv_A HDEB, 10K-L protein; unknown function; HET: MLY; 1.50A {Escherichia coli}
Probab=32.81 E-value=21 Score=21.78 Aligned_cols=14 Identities=21% Similarity=0.781 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCc
Q 037688 17 LPYIIKFCKAHGVS 30 (103)
Q Consensus 17 L~~Vie~c~~h~~~ 30 (103)
-.+|++||..|...
T Consensus 51 ~Pkvie~Ckk~P~~ 64 (79)
T 2xuv_A 51 IPXVIEYCXXNPQX 64 (79)
T ss_dssp HHHHHHHHHHCTTS
T ss_pred ccHHHHHHhcCCcc
Confidence 56899999999854
No 91
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=32.35 E-value=12 Score=25.53 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=22.6
Q ss_pred HHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCC
Q 037688 46 EMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNF 89 (103)
Q Consensus 46 ~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR~~f~I~~d~ 89 (103)
.|+.||..||+-.- ++.|-..+++++.|||+++.
T Consensus 121 nl~LaA~~lGLgsc----------~~~~~~~~~v~~~l~lp~~~ 154 (191)
T 3h4o_A 121 HMMLQATELGLASV----------WVCYFNPDIIREEFSLPDNL 154 (191)
T ss_dssp HHHHHHHHTTCEEE----------EECCSCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHCCCCEE----------EEcccCHHHHHHHhCcCCCc
Confidence 45555555555432 23456789999999998764
No 92
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=31.57 E-value=46 Score=22.58 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHH--------HhCCCCCCChH
Q 037688 61 DYLTKTLANRIKNKSVEYIRK--------FFGIQTNFMPE 92 (103)
Q Consensus 61 ~l~~~~vA~~i~gKt~eeiR~--------~f~I~~d~t~e 92 (103)
.-.+..+...+.|+||+||.+ -+|+...+||.
T Consensus 89 kGL~AlL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSps 128 (155)
T 1ni7_A 89 RGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSAS 128 (155)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCch
Confidence 333444555679999999965 35677777775
No 93
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*
Probab=31.47 E-value=12 Score=25.17 Aligned_cols=19 Identities=11% Similarity=0.354 Sum_probs=15.1
Q ss_pred hcCCCHHHHHHHhCCC-CCC
Q 037688 71 IKNKSVEYIRKFFGIQ-TNF 89 (103)
Q Consensus 71 i~gKt~eeiR~~f~I~-~d~ 89 (103)
+.|-..+++++.|||+ +++
T Consensus 164 ~~~~~~~~v~~~l~lp~~~~ 183 (218)
T 1vfr_A 164 MEGIDPELLSEIFADELKGY 183 (218)
T ss_dssp ECCSCHHHHHHHTTTTTTTE
T ss_pred ccccCHHHHHHHhCCCcccc
Confidence 3456789999999999 664
No 94
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=30.64 E-value=71 Score=20.12 Aligned_cols=37 Identities=8% Similarity=0.103 Sum_probs=25.1
Q ss_pred HHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHH
Q 037688 44 LKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIR 80 (103)
Q Consensus 44 L~~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR 80 (103)
...|--||.|++.++|..+|..-=...-.|.+.+++.
T Consensus 56 aHkLkGaa~~~Ga~~L~~~~~~LE~~~r~~~~~~~l~ 92 (119)
T 3myf_A 56 IHKLHGASCYCGVPTTQRLCQEIESALKRQTPVEDLE 92 (119)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHHHTTCCGGGGH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3455569999999999998876544433455544443
No 95
>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0
Probab=30.45 E-value=12 Score=25.23 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=14.8
Q ss_pred cCCCHHHHHHHhCC-CCCC
Q 037688 72 KNKSVEYIRKFFGI-QTNF 89 (103)
Q Consensus 72 ~gKt~eeiR~~f~I-~~d~ 89 (103)
.|-..+++|+.||| ++++
T Consensus 164 ~~~~~~~v~~~L~l~p~~~ 182 (212)
T 3ge6_A 164 GGYEKDQIAEAFGMEKDRY 182 (212)
T ss_dssp CCSCHHHHHHHTTCCSSSE
T ss_pred cccCHHHHHHHhCCCCCCc
Confidence 45678999999999 7765
No 96
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis}
Probab=30.38 E-value=11 Score=25.63 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=14.7
Q ss_pred cCCCHHHHHHHhCCCCCC
Q 037688 72 KNKSVEYIRKFFGIQTNF 89 (103)
Q Consensus 72 ~gKt~eeiR~~f~I~~d~ 89 (103)
.|-..+++++.|||++++
T Consensus 169 ~~~~~~~v~~~L~lp~~~ 186 (218)
T 3bem_A 169 IGFDAEAVKRILNIDDQF 186 (218)
T ss_dssp CCSCHHHHHHHHTCCTTE
T ss_pred cCcCHHHHHHHhCCCCCc
Confidence 345789999999999874
No 97
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=29.86 E-value=21 Score=24.92 Aligned_cols=14 Identities=29% Similarity=0.726 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCc
Q 037688 17 LPYIIKFCKAHGVS 30 (103)
Q Consensus 17 L~~Vie~c~~h~~~ 30 (103)
=+.|+.||+||+-.
T Consensus 34 ~~LIl~ycr~~k~~ 47 (176)
T 3cuq_C 34 CSLVLSFCRLHKQS 47 (176)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCee
Confidence 46789999999987
No 98
>2isk_A BLUB; oxidoreductase, flavin, monooxygenase, flavin destructase, vitamin B12, dithionite, charge transfer complex, flavoprotein; HET: FNR; 2.10A {Sinorhizobium meliloti} PDB: 2isj_A* 2isl_A*
Probab=29.20 E-value=14 Score=25.30 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=15.1
Q ss_pred hcCCCHHHHHHHhCCCCCC
Q 037688 71 IKNKSVEYIRKFFGIQTNF 89 (103)
Q Consensus 71 i~gKt~eeiR~~f~I~~d~ 89 (103)
+.|-..+++++.|||++++
T Consensus 169 ~~~~~~~~v~~~L~lp~~~ 187 (230)
T 2isk_A 169 VSIFHESEIKAILGIPDHV 187 (230)
T ss_dssp CCCSCHHHHHHHHTCCTTE
T ss_pred ecccCHHHHHHHhCCCCCc
Confidence 3456789999999998764
No 99
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=29.12 E-value=27 Score=19.99 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=13.4
Q ss_pred cCCCHHHHHHHhCCCC
Q 037688 72 KNKSVEYIRKFFGIQT 87 (103)
Q Consensus 72 ~gKt~eeiR~~f~I~~ 87 (103)
-|-|.+|||+++...+
T Consensus 25 lGlsleEIrefL~l~~ 40 (57)
T 1b0n_B 25 ANISPEEIRKYLLLNK 40 (57)
T ss_dssp TTCCHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHHHHhc
Confidence 4899999999998765
No 100
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=29.06 E-value=54 Score=17.98 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCCHHHHHHH
Q 037688 63 LTKTLANRIKNKSVEYIRKF 82 (103)
Q Consensus 63 ~~~~vA~~i~gKt~eeiR~~ 82 (103)
-++.++..++.+.|++++..
T Consensus 9 kSk~L~~Ll~s~~P~Dlq~A 28 (45)
T 1j2j_B 9 KSKMLARLLKSSHPEDLRAA 28 (45)
T ss_dssp HHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHHHHHcCChhhHHHH
Confidence 45678889999999988753
No 101
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=28.95 E-value=51 Score=21.91 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=18.6
Q ss_pred HHHHHHhcCCCHHHHHHH--------hCCCCCCChH
Q 037688 65 KTLANRIKNKSVEYIRKF--------FGIQTNFMPE 92 (103)
Q Consensus 65 ~~vA~~i~gKt~eeiR~~--------f~I~~d~t~e 92 (103)
..+.....|+||+||.+. +|+...+||.
T Consensus 86 alL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSps 121 (141)
T 3g0m_A 86 AVVFILYHQMTAQDIVHFDVRPWFEKMALAQHLTPS 121 (141)
T ss_dssp HHHHHHHTTCBHHHHHHCCCHHHHHHHTCGGGSCHH
T ss_pred HHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCch
Confidence 344445689999999743 4566666663
No 102
>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc 14579} SCOP: d.90.1.1
Probab=28.51 E-value=17 Score=24.03 Aligned_cols=15 Identities=7% Similarity=0.248 Sum_probs=12.5
Q ss_pred CHHHHHHHhCCCCCC
Q 037688 75 SVEYIRKFFGIQTNF 89 (103)
Q Consensus 75 t~eeiR~~f~I~~d~ 89 (103)
..+++++.|||++++
T Consensus 156 ~~~~~~~~l~lp~~~ 170 (200)
T 1ywq_A 156 VDAEVKETWNIPAEW 170 (200)
T ss_dssp THHHHHHHTTCCTTE
T ss_pred cHHHHHHHhCCCCCc
Confidence 358999999999874
No 103
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase, thermophIle; HET: FMN; 1.59A {Thermus thermophilus} SCOP: d.90.1.1
Probab=27.91 E-value=17 Score=24.21 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=14.4
Q ss_pred CCCHHHHHHHhCCCCCC
Q 037688 73 NKSVEYIRKFFGIQTNF 89 (103)
Q Consensus 73 gKt~eeiR~~f~I~~d~ 89 (103)
|-..+++++.|||++++
T Consensus 159 ~~~~~~v~~~l~lp~~~ 175 (205)
T 1nox_A 159 GFDPERVRAILGLPSRA 175 (205)
T ss_dssp CSCHHHHHHHHTCCTTC
T ss_pred CCCHHHHHHHhCCCCCC
Confidence 45789999999999875
No 104
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=27.76 E-value=46 Score=17.61 Aligned_cols=18 Identities=11% Similarity=-0.092 Sum_probs=14.8
Q ss_pred HhcCCCHHHHHHHhCCCC
Q 037688 70 RIKNKSVEYIRKFFGIQT 87 (103)
Q Consensus 70 ~i~gKt~eeiR~~f~I~~ 87 (103)
...|+|..||-+.+||+.
T Consensus 10 ~~~g~s~~eIA~~l~is~ 27 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISI 27 (61)
T ss_dssp HHTSCCSHHHHHHTCSCH
T ss_pred HHcCCCHHHHHHHhCCCH
Confidence 467999999999999864
No 105
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=27.04 E-value=54 Score=18.88 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=15.1
Q ss_pred CCHHHHHHHhCCCCC---CChHHHH
Q 037688 74 KSVEYIRKFFGIQTN---FMPEEEE 95 (103)
Q Consensus 74 Kt~eeiR~~f~I~~d---~t~eee~ 95 (103)
+|.+|-++++||+.+ .|.++-.
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~Ik 25 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDKIN 25 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHHHH
Confidence 367788888888876 5665543
No 106
>4dn2_A Nitroreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc; HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A*
Probab=26.94 E-value=23 Score=24.07 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=14.4
Q ss_pred CCCHHHHHHHhCCCCCC
Q 037688 73 NKSVEYIRKFFGIQTNF 89 (103)
Q Consensus 73 gKt~eeiR~~f~I~~d~ 89 (103)
+-..+++|+.|||+++.
T Consensus 157 ~~~~~~v~~~L~lp~~~ 173 (208)
T 4dn2_A 157 VFDEQQLGELLGIPAEL 173 (208)
T ss_dssp CCCHHHHHHHHTCCTTC
T ss_pred ccCHHHHHHHhCcCCCc
Confidence 45789999999999875
No 107
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=26.94 E-value=42 Score=22.28 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 037688 64 TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~ 84 (103)
+..||+.|+|+++++-..++.
T Consensus 38 ~r~Va~~IRG~~v~eAl~~L~ 58 (134)
T 2zjr_P 38 VRLVVDVIRGKSVQDAEDLLR 58 (134)
T ss_dssp HHHHHHHSTTSBHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 356889999999988777665
No 108
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=26.29 E-value=86 Score=17.80 Aligned_cols=23 Identities=0% Similarity=0.067 Sum_probs=17.7
Q ss_pred CCCHHHHHHHhCCCC-CCChHHHH
Q 037688 73 NKSVEYIRKFFGIQT-NFMPEEEE 95 (103)
Q Consensus 73 gKt~eeiR~~f~I~~-d~t~eee~ 95 (103)
+.|.++-.++|||+. +.|.+|..
T Consensus 10 ~m~~~~~y~iLgl~~~~a~~~eIk 33 (71)
T 2guz_A 10 KMNSKEALQILNLTENTLTKKKLK 33 (71)
T ss_dssp SCCHHHHHHHTTCCTTTCCHHHHH
T ss_pred CCCHHHHHHHcCCCCCCCCHHHHH
Confidence 467788899999987 67776654
No 109
>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: FMN UNL; 1.70A {Porphyromonas gingivalis W83}
Probab=25.68 E-value=18 Score=24.80 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=22.3
Q ss_pred HHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCC
Q 037688 46 EMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNF 89 (103)
Q Consensus 46 ~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR~~f~I~~d~ 89 (103)
.++.||..+|+-.- ++.|-..+++++.|||+++.
T Consensus 130 nl~LaA~~lGLgsc----------~~~~~~~~~v~~~L~lp~~~ 163 (198)
T 3ge5_A 130 YMMLEAHSLGLGCT----------WVCAFDQALCSEIFDIPSHM 163 (198)
T ss_dssp HHHHHHHHTTCEEE----------EECCSCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHCCCCEE----------EECccCHHHHHHHhCcCCCc
Confidence 45555555555432 23456789999999998864
No 110
>3of4_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; HET: FMN UNL FAD; 1.90A {Idiomarina loihiensis} SCOP: d.90.1.0
Probab=25.48 E-value=8 Score=26.55 Aligned_cols=19 Identities=0% Similarity=0.188 Sum_probs=15.4
Q ss_pred hcCCCHHHHHHHhCCCC-CC
Q 037688 71 IKNKSVEYIRKFFGIQT-NF 89 (103)
Q Consensus 71 i~gKt~eeiR~~f~I~~-d~ 89 (103)
+.|-.++.+++.|||++ ++
T Consensus 156 i~g~~~~~v~~~L~lp~~~~ 175 (209)
T 3of4_A 156 MEGIEHDAYDNILSLKDLGL 175 (209)
T ss_dssp BCCSCHHHHHHHTTHHHHTE
T ss_pred ecccCHHHHHHHhCCCCCCc
Confidence 45678999999999986 54
No 111
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.09 E-value=44 Score=18.95 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=14.9
Q ss_pred HHHHH-HhcCCCHHHHHHHh
Q 037688 65 KTLAN-RIKNKSVEYIRKFF 83 (103)
Q Consensus 65 ~~vA~-~i~gKt~eeiR~~f 83 (103)
..||. .+.+||+.++.+++
T Consensus 32 ~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 32 FRIRKELLPNKETGELITFY 51 (63)
T ss_dssp HHHHHHSCTTSCHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHH
Confidence 45676 57889999998876
No 112
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=25.08 E-value=60 Score=18.78 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=13.4
Q ss_pred HhcCCCHHHHHHHhCCCC
Q 037688 70 RIKNKSVEYIRKFFGIQT 87 (103)
Q Consensus 70 ~i~gKt~eeiR~~f~I~~ 87 (103)
...|+|..||-+.+||+.
T Consensus 33 ~~~g~s~~eIA~~l~is~ 50 (82)
T 1je8_A 33 IAQGLPNKMIARRLDITE 50 (82)
T ss_dssp HTTTCCHHHHHHHHTSCH
T ss_pred HHcCCCHHHHHHHHCcCH
Confidence 357888888888888764
No 113
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=24.95 E-value=28 Score=27.15 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=28.4
Q ss_pred CchhHHHHHHHhhhhhchHHHHHHHHHHHHHHhc-CCCHHHHHHHhC
Q 037688 39 KSNDELKEMLLVANYLNIKEMLDYLTKTLANRIK-NKSVEYIRKFFG 84 (103)
Q Consensus 39 ~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~-gKt~eeiR~~f~ 84 (103)
|+.......+.|+--.|-.. ...||.-+. |||++||+.++.
T Consensus 126 WnrrDF~~FI~a~~kyGR~d-----~~~IA~ev~~~Kt~eEV~~Y~~ 167 (374)
T 2y9y_A 126 WNKLEFRKFITVSGKYGRNS-----IQAIARELAPGKTLEEVRAYAK 167 (374)
T ss_dssp SCHHHHHHHHHHHHHHCTTC-----HHHHHSSCCCSSSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCHhH-----HHHHHHHHccCCCHHHHHHHHH
Confidence 35556666777766555432 346777777 899999999875
No 114
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=24.48 E-value=75 Score=17.24 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=14.0
Q ss_pred HhcCCCHHHHHHHhCCCC
Q 037688 70 RIKNKSVEYIRKFFGIQT 87 (103)
Q Consensus 70 ~i~gKt~eeiR~~f~I~~ 87 (103)
...|.|..||-+.+|++.
T Consensus 23 ~~~g~s~~eIA~~l~is~ 40 (74)
T 1fse_A 23 LVQDKTTKEIASELFISE 40 (74)
T ss_dssp HTTTCCHHHHHHHHTSCH
T ss_pred HHcCCCHHHHHHHHCCCH
Confidence 357888888888888864
No 115
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB: 1og6_A*
Probab=24.38 E-value=80 Score=23.07 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=36.2
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHH------hcC-CCHHHHHHHhCCCC-CCChHHHHHHhh
Q 037688 47 MLLVANYLNIKEMLDYLTKTLANR------IKN-KSVEYIRKFFGIQT-NFMPEEEEATRK 99 (103)
Q Consensus 47 li~AA~yL~I~~Ll~l~~~~vA~~------i~g-Kt~eeiR~~f~I~~-d~t~eee~~i~~ 99 (103)
|-..|.-.++..+.+++-+.+-.. |-| .++++|++.+..-+ .+|+++.++|..
T Consensus 251 l~~ia~~~g~t~~aqvaL~w~l~~~~~~~~I~G~~~~~~l~en~~a~~~~Ls~ee~~~l~~ 311 (319)
T 1ur3_M 251 LAVVAEELNAGSIEQVVNAWVLRLPSQPLPIIGSGKIERVRAAVEAETLKMTRQQWFRIRK 311 (319)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHTSTTCCEEEECCSCHHHHHHHHGGGGCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 334455566666566666655443 334 78999999887654 789999988865
No 116
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=24.21 E-value=54 Score=22.26 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 037688 64 TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~ 84 (103)
+..||+.|+|+++++-..++.
T Consensus 29 ~r~va~~IrG~~v~~A~~~L~ 49 (155)
T 1vq8_R 29 SKAIAREIKGKTAGEAVDYLE 49 (155)
T ss_dssp HHHHHHHHTTSBHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 456889999999998877764
No 117
>2km7_A Small protein A; BAME, SMPA, BAM complex, OMP85, YAET, cell membrane, cell OU membrane, lipoprotein, membrane, palmitate, membrane protei; NMR {Escherichia coli} PDB: 2kxx_A
Probab=23.86 E-value=28 Score=21.65 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=16.7
Q ss_pred HHHHhcCCCHHHHHHHhCCCC
Q 037688 67 LANRIKNKSVEYIRKFFGIQT 87 (103)
Q Consensus 67 vA~~i~gKt~eeiR~~f~I~~ 87 (103)
++..-.|+|.++++..||-|.
T Consensus 24 ~~~i~~GmTk~qV~~lLG~P~ 44 (102)
T 2km7_A 24 VSKIRVGMTQQQVAYALGTPL 44 (102)
T ss_dssp HTTCCTTCBHHHHHHHHCCCC
T ss_pred HHhccCCCCHHHHHHhcCCCc
Confidence 444455999999999999764
No 118
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=23.72 E-value=90 Score=21.81 Aligned_cols=31 Identities=10% Similarity=0.216 Sum_probs=15.6
Q ss_pred HHHHHHHhcC-CCHHHHHHHhCCCCCCChHHH
Q 037688 64 TKTLANRIKN-KSVEYIRKFFGIQTNFMPEEE 94 (103)
Q Consensus 64 ~~~vA~~i~g-Kt~eeiR~~f~I~~d~t~eee 94 (103)
-.+|+.+++- +-++++-+.|+++++++-..-
T Consensus 38 r~~VSR~L~~A~~~~~lv~lfp~~~~ls~p~~ 69 (192)
T 1zx4_A 38 QAKVTRALQAASAPEELVALFPVQSELTFSDY 69 (192)
T ss_dssp HHHHHHHHHHHTSCHHHHTTCSCGGGCCHHHH
T ss_pred HHHHHHHHHHhccchhhHHHcCCcccCccchH
Confidence 3445554442 335555555666666554433
No 119
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=23.39 E-value=66 Score=17.17 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=15.2
Q ss_pred HHHHHHhc--CCCHHHHHHHh
Q 037688 65 KTLANRIK--NKSVEYIRKFF 83 (103)
Q Consensus 65 ~~vA~~i~--gKt~eeiR~~f 83 (103)
..||..+. |+|+.++|..+
T Consensus 26 ~~Ia~~~~~~~Rt~~qcr~Rw 46 (53)
T 1w0t_A 26 SKILLHYKFNNRTSVMLKDRW 46 (53)
T ss_dssp HHHHHHSCCSSCCHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHH
Confidence 55777778 89999998865
No 120
>1dj8_A HDEA, protein HNS-dependent expression A; alpha helical, structural protein; 2.00A {Escherichia coli} SCOP: a.57.1.1 PDB: 1bg8_A
Probab=23.36 E-value=35 Score=21.17 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCc
Q 037688 17 LPYIIKFCKAHGVS 30 (103)
Q Consensus 17 L~~Vie~c~~h~~~ 30 (103)
-.+|++||..|...
T Consensus 59 ~P~vve~Ckk~P~~ 72 (89)
T 1dj8_A 59 TPAIVQACTQDKQA 72 (89)
T ss_dssp HHHHHHHHHTTTTS
T ss_pred hHHHHHHHHhCchh
Confidence 67899999999864
No 121
>1txl_A Metal-binding protein YODA; E.coli, structural genomics, NEW fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: b.60.1.4 PDB: 1s7d_A 1oej_A 1oee_A 1oek_A
Probab=23.33 E-value=59 Score=23.45 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=22.2
Q ss_pred hhhchHHHHHHHHHHHHHHhcCCCHHHHHHHhC
Q 037688 52 NYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 52 ~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR~~f~ 84 (103)
-||+=..| +-.++..|..-++||+||.|+++.
T Consensus 66 pyL~dg~L-d~v~~~kAk~~~~~TaeeyKayy~ 97 (215)
T 1txl_A 66 PLLQSGKL-DPVFQKKADADKTKTFAEIKDYYH 97 (215)
T ss_dssp HHHHHTTT-HHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred hhhcCccH-HHHHHHHHhhcCCCCHHHHHHHHH
Confidence 45544444 445567788766899999999874
No 122
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=23.28 E-value=1.4e+02 Score=18.64 Aligned_cols=67 Identities=13% Similarity=0.233 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCChHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFGIQTNFMPEEEEA 96 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR~~f~I~~d~t~eee~~ 96 (103)
+++-++|+++ |-+. +.+..-++..- .++.. |-......||+. .=+|++|+|.+|.-... +|+.++
T Consensus 34 ~~ktl~y~~k--------Fsk~-~~e~a~~l~e~--L~~~~-l~e~~a~~I~nl-~P~t~dElraii~~~~~--~eel~~ 98 (107)
T 1go3_F 34 QGCALDYLQK--------FAKL-DKEEAKKLVEE--LISLG-IDEKTAVKIADI-LPEDLDDLRAIYYKREL--PENAEE 98 (107)
T ss_dssp HHHHHHHHHH--------HCCS-CHHHHHHHHHH--HHHTT-CCHHHHHHHHHH-CCCSHHHHHHHSTTSCC--CTTHHH
T ss_pred HHHHHHHHHH--------HhCC-CHHHHHHHHHH--HHhCC-CCHHHHHHHHHh-CCCCHHHHHHHHhcccC--cHHHHH
Confidence 6666666665 3333 44433333321 11222 566667777774 67999999999987754 677766
Q ss_pred Hh
Q 037688 97 TR 98 (103)
Q Consensus 97 i~ 98 (103)
|-
T Consensus 99 IL 100 (107)
T 1go3_F 99 IL 100 (107)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 123
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=23.00 E-value=54 Score=19.04 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=15.1
Q ss_pred HHHHH-HhcCCCHHHHHHHh
Q 037688 65 KTLAN-RIKNKSVEYIRKFF 83 (103)
Q Consensus 65 ~~vA~-~i~gKt~eeiR~~f 83 (103)
..||. ++.+||+.++.+++
T Consensus 31 ~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 31 NDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp HHHHHTTCSSSCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHH
Confidence 45676 58899999998876
No 124
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=22.74 E-value=67 Score=20.72 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCCC
Q 037688 59 MLDYLTKTLANRIKNKSVEYIRKFFGIQT 87 (103)
Q Consensus 59 Ll~l~~~~vA~~i~gKt~eeiR~~f~I~~ 87 (103)
+.+-.|..+| .|.|..+|.+.+|||.
T Consensus 17 ~~e~I~~~i~---~G~sl~~i~~~~~~ps 42 (140)
T 4dyq_A 17 VADDICSLLS---SGESLLKVCKRPGMPD 42 (140)
T ss_dssp HHHHHHHHHH---TTCCHHHHHTSTTCCC
T ss_pred HHHHHHHHHH---CCCcHHHHHhcCCCCC
Confidence 4455565554 6999999999999964
No 125
>3qdl_A Oxygen-insensitive NADPH nitroreductase; oxidoreductase; HET: FMN; 2.00A {Helicobacter pylori}
Probab=22.65 E-value=18 Score=24.56 Aligned_cols=20 Identities=5% Similarity=-0.109 Sum_probs=15.8
Q ss_pred hcCCCHHHHHHHhCCC-CCCC
Q 037688 71 IKNKSVEYIRKFFGIQ-TNFM 90 (103)
Q Consensus 71 i~gKt~eeiR~~f~I~-~d~t 90 (103)
+.|-..+++++.|||+ +++.
T Consensus 161 ~~~~~~~~~~~~l~lp~~~~~ 181 (210)
T 3qdl_A 161 IGGFDPLKVGEVLEERINKPK 181 (210)
T ss_dssp ECCSCHHHHHHHHHTTSCCCE
T ss_pred ecccCHHHHHHHhCCCCCCce
Confidence 4456789999999999 7653
No 126
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=22.62 E-value=32 Score=19.55 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=12.1
Q ss_pred CHHHHHHHhCCCCC
Q 037688 75 SVEYIRKFFGIQTN 88 (103)
Q Consensus 75 t~eeiR~~f~I~~d 88 (103)
=|.++|+.+||...
T Consensus 26 IPkeiR~~Lgi~~G 39 (59)
T 1yfb_A 26 IPIELRRTLGIAEK 39 (59)
T ss_dssp CCHHHHHHTTCCTT
T ss_pred eCHHHHHHcCCCCC
Confidence 48999999999874
No 127
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=22.12 E-value=62 Score=18.38 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHhcCCCHHHHH
Q 037688 55 NIKEMLDYLTKTLANRIKNKSVEYIR 80 (103)
Q Consensus 55 ~I~~Ll~l~~~~vA~~i~gKt~eeiR 80 (103)
+|..+++.++..||. .|...|++-
T Consensus 2 ~i~~iI~ktA~fVar--nG~~fE~~l 25 (64)
T 2dt6_A 2 EVRNIVDKTASFVAR--NGPEFEARI 25 (64)
T ss_dssp HHHHHHHHHHHHHHH--HCTHHHHHH
T ss_pred hHHHHHHHHHHHHHH--cCHHHHHHH
Confidence 477899999999998 688777663
No 128
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=22.11 E-value=18 Score=21.78 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=16.5
Q ss_pred HHHHhcCCCHHHHHHHhCCCC
Q 037688 67 LANRIKNKSVEYIRKFFGIQT 87 (103)
Q Consensus 67 vA~~i~gKt~eeiR~~f~I~~ 87 (103)
++..-.|+|.++++..||-|.
T Consensus 10 ~~~i~~GmTk~qV~~lLG~P~ 30 (88)
T 2yh9_A 10 VSKIRVGMTQQQVAYALGTPL 30 (88)
T ss_dssp CTTCCTTCBHHHHHHHHCSCS
T ss_pred HHhccCCCCHHHHHHHcCCCc
Confidence 344445999999999999775
No 129
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=22.07 E-value=1.2e+02 Score=19.23 Aligned_cols=38 Identities=8% Similarity=0.031 Sum_probs=26.0
Q ss_pred HHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHH
Q 037688 43 ELKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIR 80 (103)
Q Consensus 43 ~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR 80 (103)
....|--||.|++.+.|..+|-.-=...-.|.+.+++.
T Consensus 64 ~aHkLkGaa~~~Ga~~L~~~c~~LE~~~r~g~~~~~l~ 101 (123)
T 3iqt_A 64 LIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLE 101 (123)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTCCGGGGH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 44566679999999999997775543333466655543
No 130
>1m93_A Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1
Probab=22.06 E-value=28 Score=19.26 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhCCCCC
Q 037688 61 DYLTKTLANRIKNKSVEYIRKFFGIQTN 88 (103)
Q Consensus 61 ~l~~~~vA~~i~gKt~eeiR~~f~I~~d 88 (103)
..+-..++.=.+|.|.+||++.++.+.+
T Consensus 24 ~~aLaml~~GA~g~T~~ql~~~L~~~~~ 51 (55)
T 1m93_A 24 SSVLTILYYGANGSTAEQLSKYVEKEAD 51 (55)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTTC-----
T ss_pred HHHHHHHHhhccchHHHHHHHHhCCCcc
Confidence 3344444455688999999999998764
No 131
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*
Probab=22.04 E-value=91 Score=22.42 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCC-CCChHHHHHHhh
Q 037688 73 NKSVEYIRKFFGIQT-NFMPEEEEATRK 99 (103)
Q Consensus 73 gKt~eeiR~~f~I~~-d~t~eee~~i~~ 99 (103)
..++++|++.+..-+ .+|+||.++|..
T Consensus 263 ~~~~~~l~eN~~a~~~~Ls~ee~~~id~ 290 (324)
T 4gac_A 263 SINPSRILQNIQVFDFTFSPEEMKQLDA 290 (324)
T ss_dssp CCCHHHHHHHTCCSSCCCCHHHHHHHHT
T ss_pred CCCHHHHHHHHhhCCCCCCHHHHHHHhc
Confidence 488999999998765 699999999864
No 132
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q
Probab=22.04 E-value=62 Score=22.70 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 037688 64 TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~ 84 (103)
++.||+.|+|+++++-.+++.
T Consensus 31 ~reva~~IRG~~v~~A~~~L~ 51 (183)
T 4a17_Q 31 TYEVVRAIKGLNLENAKRYLK 51 (183)
T ss_dssp HHHHHHHHTTSBHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 456899999999999888875
No 133
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=21.89 E-value=54 Score=17.68 Aligned_cols=17 Identities=12% Similarity=0.005 Sum_probs=14.9
Q ss_pred hcCCCHHHHHHHhCCCC
Q 037688 71 IKNKSVEYIRKFFGIQT 87 (103)
Q Consensus 71 i~gKt~eeiR~~f~I~~ 87 (103)
+.|.|.+||-+.+|++.
T Consensus 29 ~~g~s~~eIA~~lgis~ 45 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPV 45 (70)
T ss_dssp TSCCCHHHHHHHHTSCH
T ss_pred HcCCCHHHHHHHHCcCH
Confidence 67999999999999864
No 134
>3obc_A Pyrophosphatase; dimeric four alpha-helical bundle, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PGE; 1.80A {Archaeoglobus fulgidus} SCOP: a.204.1.0
Probab=21.85 E-value=66 Score=20.85 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=20.8
Q ss_pred hHHHHHHHhhhhhchHHHHHHHHHHHHHHhc
Q 037688 42 DELKEMLLVANYLNIKEMLDYLTKTLANRIK 72 (103)
Q Consensus 42 ~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~ 72 (103)
+.|+=|+.-|+.|||+ |-+...++++...+
T Consensus 79 DVL~Yl~~LA~~lgID-Leea~~~Km~Kn~~ 108 (118)
T 3obc_A 79 DVLIYLLFLCDVAEIN-PIEAVKRKMEKNER 108 (118)
T ss_dssp HHHHHHHHHHHHHTCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcC-HHHHHHHHHHHHHH
Confidence 4667788899999998 66666666655433
No 135
>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=21.76 E-value=39 Score=19.43 Aligned_cols=11 Identities=36% Similarity=0.452 Sum_probs=8.7
Q ss_pred hcCCCHHHHHH
Q 037688 71 IKNKSVEYIRK 81 (103)
Q Consensus 71 i~gKt~eeiR~ 81 (103)
.++||.||+|-
T Consensus 38 Y~~~S~EELR~ 48 (56)
T 3mmy_B 38 YESKSLEELRL 48 (56)
T ss_dssp TTTSCHHHHHH
T ss_pred hhcCCHHHHHH
Confidence 46899999983
No 136
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=21.57 E-value=60 Score=20.91 Aligned_cols=43 Identities=5% Similarity=-0.025 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHH-HHHHHHH
Q 037688 17 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEM-LDYLTKT 66 (103)
Q Consensus 17 L~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~L-l~l~~~~ 66 (103)
++.|+.|.+.-+ +..-+.-.+-.+..-|.|.+|.+| ++-||..
T Consensus 64 F~~ILnflR~G~-------l~~p~~~~~~~l~~Ea~fy~i~~l~l~~cC~~ 107 (124)
T 1s1g_A 64 FRCVLNFYRTGK-------LHYPRYECISAYDDELAFYGILPEIIGDCCYE 107 (124)
T ss_dssp HHHHHHHHHHSC-------BCCCTTSCHHHHHHHHHHTTCCGGGBCHHHHH
T ss_pred HHHHHHHHhcCC-------CCCCCCcCHHHHHHHHHHcCCChHHHHHHHHH
Confidence 888888888732 221112246788999999999998 5888853
No 137
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.52 E-value=65 Score=21.84 Aligned_cols=21 Identities=0% Similarity=0.188 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 037688 64 TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~ 84 (103)
+..||+.|+|+++++-..++.
T Consensus 32 ~r~va~~IrG~~v~~A~~~L~ 52 (155)
T 3j21_S 32 AVEVCRELRGMMLNDALRYLD 52 (155)
T ss_dssp HHHHHHHHTTCBHHHHHHHHH
T ss_pred HHHHHHHHCCCcHHHHHHHHH
Confidence 356889999999998888765
No 138
>3gr3_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: MSE FMN UNL; 1.45A {Bartonella henselae str}
Probab=21.32 E-value=16 Score=25.13 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=12.3
Q ss_pred HHHHHHHhCCCCCC
Q 037688 76 VEYIRKFFGIQTNF 89 (103)
Q Consensus 76 ~eeiR~~f~I~~d~ 89 (103)
.+++++.|||+++.
T Consensus 179 ~~~~~~~l~lp~~~ 192 (230)
T 3gr3_A 179 HKQIRSLLSVPSDR 192 (230)
T ss_dssp HHHHHHHHTCCTTE
T ss_pred hHHHHHHcCcCCCc
Confidence 78999999999864
No 139
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=21.28 E-value=1e+02 Score=21.97 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=30.1
Q ss_pred cCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHh
Q 037688 37 KGKSNDELKEMLLVANYLNIKEMLDYLTKTLANRI 71 (103)
Q Consensus 37 ~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i 71 (103)
+.++.+....++..|...+.+.|.+.|.+.|+..+
T Consensus 270 ~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~ 304 (312)
T 3hqi_A 270 SNLSVENAAEILILADLHSADQLKTQAVDFINYHA 304 (312)
T ss_dssp TTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33477889999999999999999999999998754
No 140
>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A
Probab=20.91 E-value=79 Score=22.27 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCChHHH
Q 037688 58 EMLDYLTKTLANRIKNKSVEYIRKFFGIQTNFMPEEE 94 (103)
Q Consensus 58 ~Ll~l~~~~vA~~i~gKt~eeiR~~f~I~~d~t~eee 94 (103)
.+-+...+.+|.. .|+++|+|++...-..=+|++|-
T Consensus 157 ~~~~~i~~iya~~-TG~~~e~I~~~m~rd~~msa~EA 192 (205)
T 4gm2_A 157 NTKKKVIEIISKN-TEKDTNVISNVLERDKYFNADEA 192 (205)
T ss_dssp HHHHHHHHHHHHH-HTCCHHHHHHHTTSCEEEEHHHH
T ss_pred HHHHHHHHHHHHH-hCCCHHHHHHHhcCCcccCHHHH
Confidence 3344555666665 69999999999754433677664
No 141
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=20.81 E-value=99 Score=18.36 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=14.7
Q ss_pred HhcCCCHHHHHHHhCCCC
Q 037688 70 RIKNKSVEYIRKFFGIQT 87 (103)
Q Consensus 70 ~i~gKt~eeiR~~f~I~~ 87 (103)
...|+|..||-+.+||+.
T Consensus 41 ~~~G~s~~eIA~~L~iS~ 58 (90)
T 3ulq_B 41 VEKGFTNQEIADALHLSK 58 (90)
T ss_dssp HHTTCCHHHHHHHHTCCH
T ss_pred HHcCCCHHHHHHHHCcCH
Confidence 457899999999998864
No 142
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=20.68 E-value=87 Score=19.88 Aligned_cols=71 Identities=8% Similarity=0.059 Sum_probs=43.1
Q ss_pred cHHHHHHHHHhcCCcchhhcccCCchhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHhC-CCC-CCChHH
Q 037688 16 QLPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVANYLNIKEMLDYLTKTLANRIKNKSVEYIRKFFG-IQT-NFMPEE 93 (103)
Q Consensus 16 lL~~Vie~c~~h~~~kD~~F~~~~~~~~L~~li~AA~yL~I~~Ll~l~~~~vA~~i~gKt~eeiR~~f~-I~~-d~t~ee 93 (103)
++++-++|+++.. +. +.+..-++...---++ |.+..+..||+. .=.|++|+|..+. ... .+++|+
T Consensus 33 ~~~ktl~y~~~Fs--------k~-~~e~a~~l~e~L~~~~---l~~~~~a~IanL-~P~~~dElrali~s~e~~~~~dee 99 (113)
T 4ayb_F 33 LLQRTYDYLNSVE--------KC-DAESAQKVVEELSSII---SREDVRAVLASI-CPITPDEVRSILIMDSNRTYTSED 99 (113)
T ss_dssp THHHHHHHTTTTC--------SS-CHHHHHHHHHHHHTTC---CCHHHHHHHHHH-CCCSSCCCCTTTTTTCCCCCCCTH
T ss_pred HHHHHHHHHHHHc--------CC-CHHHHHHHHHHHHHcC---CCHHHHHHHHHc-CCCCHHHHHHHHHhhccCCCCHHH
Confidence 3888899987743 22 4443333333211122 344455567774 6789999999875 433 367888
Q ss_pred HHHHhh
Q 037688 94 EEATRK 99 (103)
Q Consensus 94 e~~i~~ 99 (103)
.++|-.
T Consensus 100 L~~IL~ 105 (113)
T 4ayb_F 100 IQKIID 105 (113)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887753
No 143
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=20.49 E-value=1.1e+02 Score=21.33 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhCCCCCCChHHHH
Q 037688 61 DYLTKTLANRIKNKSVEYIRKFFGIQTNFMPEEEE 95 (103)
Q Consensus 61 ~l~~~~vA~~i~gKt~eeiR~~f~I~~d~t~eee~ 95 (103)
+...+.+|.. .|++++++++...-..=||++|--
T Consensus 148 ~~~~~~~a~~-tG~~~e~i~~~~~~d~~lta~EA~ 181 (203)
T 3qwd_A 148 EKLNRILSER-TGQSIEKIQKDTDRDNFLTAEEAK 181 (203)
T ss_dssp HHHHHHHHHH-HCCCHHHHHHHHTSCCCEEHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHhhcCceecHHHHH
Confidence 3445556654 699999999998654456777643
No 144
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=25.81 E-value=21 Score=21.71 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 037688 64 TKTLANRIKNKSVEYIRKFFG 84 (103)
Q Consensus 64 ~~~vA~~i~gKt~eeiR~~f~ 84 (103)
-..||..+.|+|..++|..|.
T Consensus 38 W~~IA~~l~gRt~~q~k~r~~ 58 (89)
T 2ltp_A 38 WSAIARMVGSKTVSQCKNFYF 58 (89)
Confidence 356888889999999999886
No 145
>2r01_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.15A {Chlorobium tepidum tls}
Probab=20.31 E-value=22 Score=24.24 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=14.0
Q ss_pred CCCHHHHHHHhCCCCCC
Q 037688 73 NKSVEYIRKFFGIQTNF 89 (103)
Q Consensus 73 gKt~eeiR~~f~I~~d~ 89 (103)
|-..+++++.|||++++
T Consensus 137 ~~~~~~~~~~l~lp~~~ 153 (210)
T 2r01_A 137 AIDRERLMASLGIPDAW 153 (210)
T ss_dssp CBCHHHHHHHHTCCTTE
T ss_pred ccCHHHHHHHcCcCCCc
Confidence 45688999999999764
No 146
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: NAP; 1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Probab=20.00 E-value=1.1e+02 Score=22.01 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCC-CCChHHHHHHhh
Q 037688 73 NKSVEYIRKFFGIQT-NFMPEEEEATRK 99 (103)
Q Consensus 73 gKt~eeiR~~f~I~~-d~t~eee~~i~~ 99 (103)
..+++++++.+...+ .+|+||.++|.+
T Consensus 243 ~~~~~~l~eNl~a~~~~Ls~ee~~~ld~ 270 (290)
T 4gie_A 243 STNKGRIQENFNVWDFKLTEEEMRQIDE 270 (290)
T ss_dssp CCSHHHHHHHHCCSSCCCCHHHHHHHHT
T ss_pred CCCHHHHHHHHhhcCCCCCHHHHHHHhc
Confidence 378999999999765 689999998865
Done!