BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037689
         (122 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
          Protein In Vitro
 pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
          Protein In Living E. Coli Cells
          Length = 66

 Score = 36.2 bits (82), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 1  MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVTGRIDPQ 41
          M CN C   V +A+ K  GVEK    + K   +V G  DP+
Sbjct: 9  MTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPK 49


>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
          Metallidurans Ch34
 pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
          Metallidurans Ch34
          Length = 72

 Score = 32.3 bits (72), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 1  MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVT 35
          M C+AC  TV +AISK +GV K        + VVT
Sbjct: 12 MTCSACPITVKKAISKVEGVSKVDVTFETRQAVVT 46


>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
          Protein From The Bacterial Mercury Detoxification
          System, Nmr, 20 Structures
 pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
          Periplasmic Protein From The Bacterial Mercury
          Detoxification System, Nmr, 20 Structures
 pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
          Structures
          Length = 72

 Score = 32.0 bits (71), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 19/35 (54%)

Query: 1  MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVT 35
          M C AC  TV +A+SK +GV K      K   VVT
Sbjct: 12 MTCAACPITVKKALSKVEGVSKVDVGFEKREAVVT 46


>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
          Length = 71

 Score = 30.0 bits (66), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 1  MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVT 35
          M C AC  ++ RA+ + KGV + +  +   R+ VT
Sbjct: 12 MRCAACASSIERALERLKGVAEASVTVATGRLTVT 46


>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
          Length = 71

 Score = 29.3 bits (64), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 1  MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVT--GRIDPQ 41
          M C AC  ++ RAI+K  GV+    +    + VV+  G   PQ
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQ 54


>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
          Coppper(I) Atpase Pacs In Its Apo Form
          Length = 73

 Score = 29.3 bits (64), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 1  MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVT--GRIDPQ 41
          M C AC  ++ RAI+K  GV+    +    + VV+  G   PQ
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQ 54


>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
 pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
 pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
          Length = 69

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 1  MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVT--GRIDPQ 41
          M C +C  ++ RAI+K  GV+    +    + VV+  G   PQ
Sbjct: 11 MDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQ 53


>pdb|4HSB|A Chain A, S. Pombe 3-methyladenine Dna Glycosylase-like Protein Mag2
           Bound To Damaged Dna
          Length = 217

 Score = 26.9 bits (58), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 7   ERTVARAISKFKGVEKFTTDMNKHRVVVTGRID 39
           E  +  ++SK KGV+++T +M  + +   GR+D
Sbjct: 130 EEELMESLSKIKGVKRWTIEM--YSIFTLGRLD 160


>pdb|4B21|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
           Glycosylase Homolog Mag2
 pdb|4B22|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
           Glycosylase Homolog Mag2
 pdb|4B23|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
           Glycoslase Homolog Mag2
 pdb|4B24|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
           Glycoslase Homolog Mag2
          Length = 232

 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 7   ERTVARAISKFKGVEKFTTDMNKHRVVVTGRID 39
           E  +  ++SK KGV+++T +M  + +   GR+D
Sbjct: 145 EEELMESLSKIKGVKRWTIEM--YSIFTLGRLD 175


>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
          Of The Second Metal-Binding Domain Of The Menkes
          Protein Atp7a
 pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I)
          Form Of The Second Metal-Binding Domain Of The Menkes
          Protein Atp7a
          Length = 76

 Score = 25.4 bits (54), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 1  MYCNACERTVARAISKFKGVEKFTTDMN 28
          M C++C  T+   I K +GV++    ++
Sbjct: 12 MTCHSCTSTIEGKIGKLQGVQRIKVSLD 39


>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
          Length = 84

 Score = 25.4 bits (54), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 1  MYCNACERTVARAISKFKGVEKFTTDMN 28
          M C++C  T+   I K +GV++    ++
Sbjct: 18 MTCHSCTSTIEGKIGKLQGVQRIKVSLD 45


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,805,190
Number of Sequences: 62578
Number of extensions: 78429
Number of successful extensions: 223
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 18
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)