BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037689
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
Length = 153
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVTGRIDPQKVLKKLKKKTGKKVEIVDN 60
M C CER V R++ KGV T + H+V V G +DP KV+ ++ +TGKKVE+
Sbjct: 34 MDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVARMSHRTGKKVELWPY 93
Query: 61 NNNNNNEESPKGCSNNEENEDTYRALLDKTKEDLAILFDCCKYNDEVVMMFSDENPNACS 120
+ +++ Y +D ++ L FSDENP AC
Sbjct: 94 VPYDVVAHPYAAGVYDKKAPSGYVRRVD--DPGVSQLARASSTEVRYTTAFSDENPAACV 151
Query: 121 IM 122
+M
Sbjct: 152 VM 153
>sp|Q75DD6|CCS1_ASHGO Superoxide dismutase 1 copper chaperone OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=CCS1 PE=3 SV=1
Length = 238
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVTGRIDPQKVLKKLKKKTGK 53
M+C C ++RA+ GV++ T D+ + V V G P +++ L TG+
Sbjct: 16 MHCGDCTGEISRALRAVPGVQEVTPDLERQLVAVRGIAPPSSIVQAL-AATGR 67
>sp|P94186|MERP_ALCSP Mercuric transport protein periplasmic component OS=Alcaligenes
sp. GN=merP PE=3 SV=1
Length = 91
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVTGRIDPQKVLKKLKKKTG 52
M C+ C TV +AISK +GV K VVT D + ++KL K TG
Sbjct: 31 MTCSTCPITVKKAISKVEGVSKIDVTFETREAVVTFD-DAKTSVQKLTKATG 81
>sp|P13113|MERP_SERMA Mercuric transport protein periplasmic component OS=Serratia
marcescens GN=merP PE=1 SV=1
Length = 91
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVTGRIDPQKVLKKLKKKT 51
M C+AC TV +AISK +GV K VVT D + ++KL K T
Sbjct: 31 MTCSACPITVKKAISKVEGVSKVNVTFETREAVVTFD-DAKTSVQKLTKAT 80
>sp|P04129|MERP_SHIFL Mercuric transport protein periplasmic component OS=Shigella
flexneri GN=merP PE=1 SV=1
Length = 91
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVTGRIDPQKVLKKLKKKTG 52
M C AC TV +A+SK +GV K K VVT D + ++KL K T
Sbjct: 31 MTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFD-DTKASVQKLTKATA 81
>sp|Q51770|MERP_PSEFL Mercuric transport protein periplasmic component OS=Pseudomonas
fluorescens GN=merP PE=3 SV=1
Length = 91
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVTGRIDPQKVLKKLKKKT 51
M C+AC TV +AISK GV K VVT D + ++KL K T
Sbjct: 31 MTCSACPITVKKAISKVDGVSKVDVTFETREAVVTFD-DAKTSVQKLTKAT 80
>sp|P04131|MERP_PSEAI Mercuric transport protein periplasmic component OS=Pseudomonas
aeruginosa GN=merP PE=4 SV=1
Length = 91
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVTGRIDPQKVLKKLKKKTG 52
M C+AC TV +AIS+ +GV K + VVT D + ++KL K T
Sbjct: 31 MTCSACPITVKKAISEVEGVSKVDVTFETRQAVVTFD-DAKTSVQKLTKATA 81
>sp|Q54PZ2|ATOX1_DICDI Copper transport protein ATOX1 homolog OS=Dictyostelium
discoideum GN=atox1 PE=3 SV=2
Length = 67
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVV-TGRIDPQKVLKKLKKKTGKKVEIV 58
M C C + V +SK GV D+ +V + ++ ++LK + +KTGKK I+
Sbjct: 9 MTCGGCSKAVNAILSKIDGVSNIQIDLENKKVSCESSKMGADELLKNI-QKTGKKCSII 66
>sp|P0A216|MERP_SALTI Mercuric transport protein periplasmic component OS=Salmonella
typhi GN=merP PE=3 SV=1
Length = 91
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVT 35
M C +C TV A+SK +GV K +K + VVT
Sbjct: 31 MTCASCPITVKHALSKVEGVSKTDVSFDKRQAVVT 65
>sp|P0A218|MERP_ENTCL Mercuric transport protein periplasmic component OS=Enterobacter
cloacae GN=merP PE=3 SV=1
Length = 91
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVT 35
M C +C TV A+SK +GV K +K + VVT
Sbjct: 31 MTCASCPITVKHALSKVEGVSKTDVSFDKRQAVVT 65
>sp|P0A217|MERP_ENTAG Mercuric transport protein periplasmic component OS=Enterobacter
agglomerans GN=merP PE=3 SV=1
Length = 91
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVT 35
M C +C TV A+SK +GV K +K + VVT
Sbjct: 31 MTCASCPITVKHALSKVEGVSKTDVSFDKRQAVVT 65
>sp|Q52107|MERP_ACICA Mercuric transport protein periplasmic component OS=Acinetobacter
calcoaceticus GN=merP PE=3 SV=1
Length = 91
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1 MYCNACERTVARAISKFKGVEKFTTDMNKHRVVVT 35
M C +C TV A+SK +GV K +K + VVT
Sbjct: 31 MTCASCPITVKHALSKVEGVSKTDVSFDKRQAVVT 65
>sp|P21538|REB1_YEAST DNA-binding protein REB1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=REB1 PE=1 SV=2
Length = 810
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 14/80 (17%)
Query: 4 NACERTVARAISKFKGVEKFTTDMNKHRVVVTGRIDPQKVLKKLKKKTGKKVEIVDNNNN 63
NA + +V A+ K+ GV D H DPQ K L+ K KK IV+++++
Sbjct: 9 NANQESVEEAVLKYVGV---GLDHQNH--------DPQLHTKDLENKHSKKQNIVESSSD 57
Query: 64 ---NNNEESPKGCSNNEENE 80
NNN++S + NN+++E
Sbjct: 58 VDVNNNDDSNRNEDNNDDSE 77
>sp|Q9DF50|CLSPN_XENLA Claspin OS=Xenopus laevis GN=clspn PE=1 SV=2
Length = 1285
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 47 LKKKTGKKVEIVDNNNNNNNE-----ESPKGCSNNEENEDTYRALLDKTKEDLAILFDCC 101
++KK+ KK +VD++++ E ++ KG S+NEENE+T A +K ++ + + D
Sbjct: 56 VRKKSKKKEVLVDSDSDEELEMRNFADNVKGHSDNEENEETMSAYREKPRKIRSAVLDSD 115
Query: 102 KYNDEVVMMFSDENPNACSI 121
+ E+ + S NA I
Sbjct: 116 NSDHELDVQISTSQ-NAAEI 134
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,205,792
Number of Sequences: 539616
Number of extensions: 1969724
Number of successful extensions: 54136
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 236
Number of HSP's that attempted gapping in prelim test: 17366
Number of HSP's gapped (non-prelim): 27680
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)