BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037690
         (192 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XHN|A Chain A, The Crystal Structure Of Cellular Repressor Of E1a-
           Stimulated Genes (Creg)
 pdb|1XHN|B Chain B, The Crystal Structure Of Cellular Repressor Of E1a-
           Stimulated Genes (Creg)
 pdb|1XHN|C Chain C, The Crystal Structure Of Cellular Repressor Of E1a-
           Stimulated Genes (Creg)
 pdb|1XHN|D Chain D, The Crystal Structure Of Cellular Repressor Of E1a-
           Stimulated Genes (Creg)
          Length = 184

 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 6/173 (3%)

Query: 14  PHPNDAAAFARWLVSQNYWGVLNTISS--DLGGAPFGNVVSFSDGLPNEGSGVPYFYLTT 71
           P   DAA  AR++   + WG L TIS+   + G PF +V+S SDG P  GSGVPYFYL+ 
Sbjct: 14  PPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSP 73

Query: 72  LDPTARNALRDKRSSLAISEYPLGTCGER--DPENPACAKITLTGKLVLVDVSTKEAEFA 129
           L  +  N   +  ++L  +      C +   DP++P C  I L+G   +  V+  E + A
Sbjct: 74  LQLSVSNLQENPYATLTXTLAQTNFCKKHGFDPQSPLCVHIXLSG--TVTKVNETEXDIA 131

Query: 130 EHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTKMN 182
           +H+LF +HPE   WP  HN+   KL I +I+++++FGG K +T ++Y +  + 
Sbjct: 132 KHSLFIRHPEXKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNVTVQ 184


>pdb|2ARZ|A Chain A, Crystal Structure Of Protein Of Unknown Function From
           Pseudomonas Aeruginosa
 pdb|2ARZ|B Chain B, Crystal Structure Of Protein Of Unknown Function From
           Pseudomonas Aeruginosa
          Length = 247

 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 21/154 (13%)

Query: 18  DAAAFARWLVSQNYWGVLNTISSDLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTAR 77
           +AA  AR L+ + Y  VL+T S    G PFG+VV +      +  G P   ++ +     
Sbjct: 7   EAAKNARELLLKEYRAVLSTHSKKWPGFPFGSVVPYC----LDAEGRPLILISRIAQHTH 62

Query: 78  NALRDKRSSLAISEYPLGTCGERDPENPACAKITLTGKLVLVDVSTKEAEFAEHALFTKH 137
           N   D R S+ +        GER  E+     I   G+L L+  + + AE    A   ++
Sbjct: 63  NLQADPRCSMLV--------GERGAED-----IQAVGRLTLLAEARQLAEEEVAAAAERY 109

Query: 138 ----PEMMDWPEDHNFQIFKLEIEDIFLINWFGG 167
               PE  D+   H+F  + L+      I  FG 
Sbjct: 110 YRYFPESADYHRVHDFDFWVLQPVQWRFIGGFGA 143


>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
           Monoclinic Crystal Form
 pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
           Monoclinic Crystal Form
          Length = 615

 Score = 26.9 bits (58), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 13/86 (15%)

Query: 60  EGSGVPYFYLTTLDPT--ARNALRDKRSSLAISEYPLGTCGERDPENPACAKITLTGKLV 117
           EG+ +  F L+ L+ +   +  LR K S ++IS           P     A   + GK++
Sbjct: 465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-----------PSETYIAAGDVXGKIL 513

Query: 118 LVDVSTKEAEFAEHALFTKHPEMMDW 143
           L D+ ++E + +  A  T     + W
Sbjct: 514 LYDLQSREVKTSRWAFRTSKINAISW 539


>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
           Crystal Form
          Length = 615

 Score = 26.6 bits (57), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 13/86 (15%)

Query: 60  EGSGVPYFYLTTLDPT--ARNALRDKRSSLAISEYPLGTCGERDPENPACAKITLTGKLV 117
           EG+ +  F L+ L+ +   +  LR K S ++IS           P     A   + GK++
Sbjct: 465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-----------PSETYIAAGDVMGKIL 513

Query: 118 LVDVSTKEAEFAEHALFTKHPEMMDW 143
           L D+ ++E + +  A  T     + W
Sbjct: 514 LYDLQSREVKTSRWAFRTSKINAISW 539


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,968,482
Number of Sequences: 62578
Number of extensions: 241244
Number of successful extensions: 518
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 5
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)