BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037690
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IUH2|CREG2_HUMAN Protein CREG2 OS=Homo sapiens GN=CREG2 PE=1 SV=1
Length = 290
Score = 130 bits (327), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 9 TISKKPHPNDAAAFARWLVSQNYWGVLNTISS--DLGGAPFGNVVSFSDGLPNEGSGVPY 66
T S P P AA AR L + WG L T+S+ + G PFGN + SDG N +G+P+
Sbjct: 113 TASAPPGPRLRAATARSLAHASVWGCLATVSTHKKIQGLPFGNCLPVSDGPFNNSTGIPF 172
Query: 67 FYLTTLDPTARNALRDKRSSLAISEYPLGTCGER--DPENPACAKITLTGKLVLVDVSTK 124
FY+T DP + +++ +SL + E C + DPE+P C ++TLTG+++ V S +
Sbjct: 173 FYMTAKDPVVADLMKNPMASLMLPESEGEFCRKNIVDPEDPRCVQLTLTGQMIAV--SPE 230
Query: 125 EAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYL 177
E EFA+ A+F++HP M WP + + K+ IE I+L W+GG ++ ++Y
Sbjct: 231 EVEFAKQAMFSRHPGMRKWPRQYEWFFMKMRIEHIWLQKWYGGASSISREEYF 283
>sp|O75629|CREG1_HUMAN Protein CREG1 OS=Homo sapiens GN=CREG1 PE=1 SV=1
Length = 220
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 103/179 (57%), Gaps = 6/179 (3%)
Query: 8 STISKKPHPNDAAAFARWLVSQNYWGVLNTISS--DLGGAPFGNVVSFSDGLPNEGSGVP 65
S + P DAA AR++ + WG L TIS+ + G PF +V+S SDG P GSGVP
Sbjct: 44 SRLPPLPPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVP 103
Query: 66 YFYLTTLDPTARNALRDKRSSLAISEYPLGTCGER--DPENPACAKITLTGKLVLVDVST 123
YFYL+ L + N + ++L ++ C + DP++P C I L+G + V+
Sbjct: 104 YFYLSPLQLSVSNLQENPYATLTMTLAQTNFCKKHGFDPQSPLCVHIMLSG--TVTKVNE 161
Query: 124 KEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTKMN 182
E + A+H+LF +HPEM WP HN+ KL I +I+++++FGG K +T ++Y + +
Sbjct: 162 TEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNVTVQ 220
>sp|Q8BGC9|CREG2_MOUSE Protein CREG2 OS=Mus musculus GN=Creg2 PE=1 SV=1
Length = 288
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 14 PHPNDAAAFARWLVSQNYWGVLNTISS--DLGGAPFGNVVSFSDGLPNEGSGVPYFYLTT 71
P P A AR L + WG L T+S+ + G PFG+ ++ SDG + +G+P+FY+T
Sbjct: 116 PGPRVHAGTARSLAHASSWGCLATVSTHEKIQGLPFGSCLAISDGPVHNSTGIPFFYMTA 175
Query: 72 LDPTARNALRDKRSSLAISEYPLGTCGER--DPENPACAKITLTGKLVLVDVSTKEAEFA 129
DP + +++ +SL + E C + DPE+P CA++TLTG++V V E EFA
Sbjct: 176 KDPAVADLVKNPTASLVLPESEGEFCRKNIVDPEDPRCARLTLTGRMVTVP--PGEVEFA 233
Query: 130 EHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTKMNK 183
+ A+F++HP M WP + + K+ +E I+L W+GG + ++Y K
Sbjct: 234 KQAMFSRHPGMRKWPRQYEWFFMKMWVEHIWLQKWYGGVSDIPREEYFKAAPRK 287
>sp|O88668|CREG1_MOUSE Protein CREG1 OS=Mus musculus GN=Creg1 PE=2 SV=1
Length = 220
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 96/173 (55%), Gaps = 6/173 (3%)
Query: 14 PHPNDAAAFARWLVSQNYWGVLNTISS--DLGGAPFGNVVSFSDGLPNEGSGVPYFYLTT 71
P D AR++ + WG L TIS+ ++ G PF +++S SDG P EG+G PY YL+
Sbjct: 50 PPREDGPRVARFVTHVSDWGSLATISTIKEVRGWPFADIISISDGPPGEGTGEPYMYLSP 109
Query: 72 LDPTARNALRDKRSSLAISEYPLGTCGER--DPENPACAKITLTGKLVLVDVSTKEAEFA 129
L + + ++L +S C DP++P C I ++G + V+ E ++A
Sbjct: 110 LQQAVSDLQENPEATLTMSLAQTVYCRNHGFDPQSPLCVHIMMSG--TVTKVNKTEEDYA 167
Query: 130 EHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTKMN 182
+LF +HPEM WP HN+ KL+I I+++++FGG K +T ++Y + +
Sbjct: 168 RDSLFVRHPEMKHWPSSHNWFFAKLKISRIWVLDYFGGPKVVTPEEYFNVTLQ 220
>sp|Q5ZJ73|CREG1_CHICK Protein CREG1 OS=Gallus gallus GN=CREG1 PE=2 SV=1
Length = 192
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 14 PHPNDAAAFARWLVSQNYWGVLNTISSDLG--GAPFGNVVSFSDGLPNEGSGVP--YFYL 69
P P +AA AR+++ WG L T+S+ G G PF N+ S SDG P G G Y YL
Sbjct: 21 PPPEEAARMARFVLHNCDWGALATLSAQEGLRGRPFANIFSISDGAPGPGGGSGVPYLYL 80
Query: 70 TTLDPTARNALRDKRSSLAIS--EYPLGTCGERDPENPACAKITLTGKLVLVDVSTKEAE 127
T ++ + ++ + +SL +S + P DP+NP CA I G +V V+ S EA
Sbjct: 81 TDMEISVQDLEVNSNASLTVSLAQTPYCKKHRYDPQNPLCAHIIFCGSIVKVNDS--EAA 138
Query: 128 FAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKPLTVDQYLHTK 180
A+ ALFT+HPEM WP+DHN+ K I +I+++++FGG K +T ++Y + K
Sbjct: 139 LAKKALFTRHPEMESWPKDHNWFYAKFNITNIWVLDYFGGLKIVTPEEYYNVK 191
>sp|O94706|TAF8_SCHPO Transcription initiation factor TFIID subunit 8
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf8 PE=3 SV=1
Length = 222
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 19/130 (14%)
Query: 55 DGLPNEGSGVPYFYLTTLDPTARNALRDKRSSLAISEYPLGTCGERDPENPACAK----- 109
D L NE +P + ++LD + L SLA+S+ P PA
Sbjct: 91 DRLANESQDIPSKFKSSLDSKMVSQLL---GSLAVSQNRPAYVVNHLPPFPASHTYMATP 147
Query: 110 ---ITLTGKLVLVDVSTKEAEFAEHALF----TKHPEMMDWPEDHNFQI----FKLEIED 158
+ T + +++T+E+ AEHAL P D P +F+ L++
Sbjct: 148 VYPVRPTSPKQIRELATQESRLAEHALRKILNVNQPRSADSPRHASFEKACSELNLDVSS 207
Query: 159 IFLINWFGGR 168
L+NW +
Sbjct: 208 FHLVNWESQK 217
>sp|Q8VCM4|LIPT_MOUSE Lipoyltransferase 1, mitochondrial OS=Mus musculus GN=Lipt1 PE=2
SV=1
Length = 373
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 15/139 (10%)
Query: 61 GSGVPYFYLTTLDPTARNALRDKRSSLAISEYPLGTCGERDPENPACAK------ITLTG 114
G Y + T L T R AL SS S Y G P P+ K TLT
Sbjct: 170 GRTAAYHHCTLLCSTNRTAL----SSSLKSPY-CGIKSNATPSIPSAVKNLLERDSTLTC 224
Query: 115 KLVLVDVSTKEAEFAEHALFTKHPEMMDWPEDHNFQIFKLEIEDIFLINWFGGRKP-LTV 173
++++ V+ AE+A H H +++ ++ F +++++ W GR P TV
Sbjct: 225 EVLMSAVA---AEYAAHHQVDGHVNLINPADETMFPGINRKVKELQSWEWVYGRTPKFTV 281
Query: 174 DQYLHTKMNKFAFILSKFI 192
D H + + F+
Sbjct: 282 DTTFHVPYEQAHLEIQVFM 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,827,840
Number of Sequences: 539616
Number of extensions: 2983934
Number of successful extensions: 5718
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5694
Number of HSP's gapped (non-prelim): 10
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)