BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037691
(337 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 48/239 (20%)
Query: 88 MLYLDSIGVDFFSL---INDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEIL 144
+L+L +G++ L + + I S L ++K+ V + S +F+ + R+V P +L
Sbjct: 187 LLFLKDLGLEDNQLGPFLTKNYAIFSEDLENLKTRVAYLQSKNFSKTDIARMVKNAPFLL 246
Query: 145 TSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVK-TRLRPTLYFLQSMGIAEV 203
+ + F +E ++N + ++ R PRLL +++ + +Y L+ +G
Sbjct: 247 SFSVERLDNRLGFFQKELELNVKKTRDLVVRLPRLLTGSLEPVKENMKVYHLE-LGF--- 302
Query: 204 NKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFR--------------RFPQLFNYS 249
KH + ++ IP++ + +KR+ T +F +FPQLFN
Sbjct: 303 -KHNEIQHMVIK---IPKM-----LTANKRKLTEIFDYVHNVMNIPHHIIVKFPQLFNTR 353
Query: 250 VKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLK 308
V ER L F+ +GR QY + KP + +DK V FP + K
Sbjct: 354 VFKIKERHL--FLAYLGR--------AQY------DPAKPNY-VSLDKFVSFPDKIFCK 395
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 188 LRPTLYFLQSMGIAE------VNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRR 241
++ L FL+ +G+ + + K+ + S +E+ L R+ Y Q FSK + M +
Sbjct: 183 IKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSKTDIARMVKN 241
Query: 242 FPQLFNYSVKDNYERKLNYFVVGMGRDLKELKE----FPQYFSFSLE 284
P L ++SV + + +L +F + ++K+ ++ P+ + SLE
Sbjct: 242 APFLLSFSV-ERLDNRLGFFQKELELNVKKTRDLVVRLPRLLTGSLE 287
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 38.5 bits (88), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 25/194 (12%)
Query: 88 MLYLDSIGVDFFSL---INDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEIL 144
+L+L +G++ L + +P I+ L +++ V + S F AE ++VS P +L
Sbjct: 180 LLFLKDVGIEDNQLGPFLTKNPYILGEELEALETRVAYLKSKKFGNAEITQMVSRAPYLL 239
Query: 145 TSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIA--- 201
+ F E ++ K ++ R PRLL +L P LQ +
Sbjct: 240 LFSVERLDNRLGFFKNELGLSVKKTKDLVIRFPRLLTG----KLEPVKENLQVCQVEFGF 295
Query: 202 ---EVNKHTY----LLSCSVEDKLIPRLQYFQKI-GFSKREATAMFRRFPQLFNYSVKDN 253
EV + + +L+ S + +L Y I G M RFPQ+FN +
Sbjct: 296 ERNEVQQIAFKTPKILTAS-KKRLRQTFDYLHNIMGIPHN----MLTRFPQVFNSKLLRI 350
Query: 254 YERKLNYFVVGMGR 267
ER + F++ +GR
Sbjct: 351 KERHM--FLIFLGR 362
>sp|Q8BVN4|MTER2_MOUSE mTERF domain-containing protein 2 OS=Mus musculus GN=Mterfd2 PE=1
SV=1
Length = 346
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 99 FSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFL 158
F+ + +P ++ S +K + L + +R++S+CPE+ T DI V L
Sbjct: 142 FNALKKNPQLLKLSSMQMKRRSSYLRKLGLGEGKLKRVLSVCPEVFTMHQRDIDRVVKVL 201
Query: 159 LREAKVNGSDLKRVISRRPRLL 180
+ + V+ R P +L
Sbjct: 202 REKCLFTAQHITDVLHRCPTVL 223
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 17/133 (12%)
Query: 166 GSDLKRVISRRPR----LLVSAVKTRLRPTLYFLQSMGIAE------VNKHTYLLSCSVE 215
G DL + I + P LL + ++ L FL+ +GI + + K+ + S +E
Sbjct: 163 GVDLSK-IEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLE 221
Query: 216 DKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKE- 274
+ L R+ Y FSK + M R+ P L N+SV + + +L +F + +K+ ++
Sbjct: 222 N-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSV-ERLDNRLGFFQKELELSVKKTRDL 279
Query: 275 ---FPQYFSFSLE 284
P+ + SLE
Sbjct: 280 VVRLPRLLTGSLE 292
>sp|Q4G078|MTER2_RAT mTERF domain-containing protein 2 OS=Rattus norvegicus GN=Mterfd2
PE=2 SV=1
Length = 347
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 36/82 (43%)
Query: 99 FSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFL 158
F + +P ++ S +K + L + +R++S+CP++ T R DI + L
Sbjct: 142 FMALKKNPQLLKLSATQMKRRSSYLRKLGLGEGKLKRVLSVCPKVFTMRQQDIDNIVKVL 201
Query: 159 LREAKVNGSDLKRVISRRPRLL 180
+ + ++ R P +L
Sbjct: 202 KEKCLFTVQHITDILHRCPAVL 223
>sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding protein unc-13 OS=Caenorhabditis
elegans GN=unc-13 PE=1 SV=4
Length = 2155
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 68 TQTPSISPPPNSPHSEF-QEKMLYL-----DSIGVDFFSLINDHPPIVSASLNDIKSTVD 121
T T ++S P S F +E+ + L +S+ +D + N P A L D+KSTVD
Sbjct: 1390 TATSAVSAPDRFAASNFGKERFVKLLDQLHNSLRIDLSAYRNHFPSSSPAKLQDLKSTVD 1449
Query: 122 LITSLDF 128
L+TS+ F
Sbjct: 1450 LLTSITF 1456
>sp|Q29A33|ATX2_DROPS Ataxin-2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Atx2
PE=3 SV=2
Length = 1121
Score = 32.7 bits (73), Expect = 4.1, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 19 PSARHDFPSAHHDFPSLSRPRNLNSHVHFPSLSTKTITPIPSPPI--PPKITQTPSISPP 76
PSA+ P A P+ SRP + V P + T T T +P+ P + Q PP
Sbjct: 898 PSAKPFTPRAGAGTPNPSRPHTPQTPVPMPGIYTTTGTHVPAAATNQPIYVVQQQHPFPP 957
Query: 77 PNSPHS 82
P P +
Sbjct: 958 PTHPQA 963
>sp|A1L4H1|SRCRL_HUMAN Soluble scavenger receptor cysteine-rich domain-containing protein
SSC5D OS=Homo sapiens GN=SSC5D PE=2 SV=3
Length = 1573
Score = 32.3 bits (72), Expect = 5.0, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 13 HPKLHFPSARHDFPSAH---HDFPSLSRPRNLNSHVHFPSLSTKTITPIPSPPIPPKITQ 69
HP+L F + P+ H P+L L S S +T ++ P+ + P +Q
Sbjct: 1363 HPQLTFTA-----PAPHTSTSQIPTLEPSPALESSPSRSSTAT-SMDPLSTEDFKPPRSQ 1416
Query: 70 TPSISPPP-NSPHS 82
+P+++PPP ++PHS
Sbjct: 1417 SPNLTPPPTHTPHS 1430
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Query: 188 LRPTLYFLQSMGIAE------VNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRR 241
++ L FL+ +G+ + + K+ + S +E+ L R+ Y Q FSK + M +
Sbjct: 180 IKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSKTDIACMVKN 238
Query: 242 FPQLFNYSVKDNYERKLNYFVVGMGRDLKELKE----FPQYFSFSLE 284
P L ++SV + + +L +F + +K+ ++ P+ + SLE
Sbjct: 239 APFLLSFSV-ERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE 284
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,366,979
Number of Sequences: 539616
Number of extensions: 5155834
Number of successful extensions: 25525
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 24379
Number of HSP's gapped (non-prelim): 1149
length of query: 337
length of database: 191,569,459
effective HSP length: 118
effective length of query: 219
effective length of database: 127,894,771
effective search space: 28008954849
effective search space used: 28008954849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)