Query 037691
Match_columns 337
No_of_seqs 182 out of 1270
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 05:11:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m66_A Mterf3, mterf domain-co 100.0 1.8E-43 6.3E-48 329.5 15.2 237 83-325 4-262 (270)
2 3mva_O Transcription terminati 100.0 5.5E-42 1.9E-46 330.2 18.9 234 82-321 49-342 (343)
3 4fp9_B Mterf domain-containing 100.0 4.4E-35 1.5E-39 280.2 16.3 199 115-322 45-263 (335)
4 3mva_O Transcription terminati 100.0 2.9E-32 9.8E-37 262.4 17.2 231 86-320 21-312 (343)
5 3m66_A Mterf3, mterf domain-co 100.0 6.2E-29 2.1E-33 231.3 14.2 181 78-266 35-226 (270)
6 4fp9_B Mterf domain-containing 99.9 3.7E-24 1.3E-28 204.6 15.0 174 82-268 44-228 (335)
7 4fzv_B Mterf domain-containing 99.5 1.8E-12 6.1E-17 108.2 15.9 153 161-318 42-214 (239)
8 4fzv_B Mterf domain-containing 98.4 1.1E-06 3.7E-11 73.4 10.2 142 116-267 33-182 (239)
9 3ff5_A PEX14P, peroxisomal bio 80.2 1.8 6E-05 29.6 3.6 25 217-241 29-53 (54)
10 3ff5_A PEX14P, peroxisomal bio 78.0 2.5 8.6E-05 28.9 3.8 33 104-139 21-53 (54)
11 4ae4_A Ubiquitin-associated pr 75.0 18 0.00063 28.5 8.8 99 85-197 9-113 (118)
12 2w84_A Peroxisomal membrane pr 71.7 3.6 0.00012 29.6 3.4 26 217-242 34-59 (70)
13 2w84_A Peroxisomal membrane pr 68.6 5.1 0.00017 28.8 3.6 34 104-140 26-59 (70)
14 1oqy_A HHR23A, UV excision rep 63.3 18 0.00061 34.3 7.5 39 219-265 326-364 (368)
15 2xzm_O RPS13E; ribosome, trans 63.3 8.9 0.0003 31.7 4.6 71 104-175 23-96 (153)
16 2knz_A Ubiquilin-4; cytoplasm, 62.1 18 0.00062 24.1 5.4 45 79-127 6-51 (53)
17 1ify_A HHR23A, UV excision rep 59.3 9.7 0.00033 25.1 3.5 40 216-263 6-45 (49)
18 3u5c_N S27A, YS15, 40S ribosom 59.3 12 0.0004 30.9 4.6 71 104-175 21-94 (151)
19 4ae4_A Ubiquitin-associated pr 57.5 67 0.0023 25.2 12.3 39 220-266 78-116 (118)
20 2cos_A Serine/threonine protei 57.2 17 0.00059 24.6 4.4 42 219-268 10-51 (54)
21 1veg_A NEDD8 ultimate buster-1 56.7 19 0.00064 26.7 5.0 41 219-267 30-70 (83)
22 1z96_A DNA-damage, UBA-domain 52.1 15 0.00052 22.5 3.4 25 218-242 4-28 (40)
23 2g3q_A Protein YBL047C; endocy 51.6 8.9 0.0003 24.3 2.3 36 219-262 5-40 (43)
24 2ooa_A E3 ubiquitin-protein li 49.0 15 0.0005 24.8 3.0 25 217-241 10-34 (52)
25 2oo9_A E3 ubiquitin-protein li 47.9 19 0.00063 23.6 3.3 24 217-240 3-26 (46)
26 1wiv_A UBP14, ubiquitin-specif 47.3 28 0.00095 24.9 4.6 39 218-264 29-67 (73)
27 1wgn_A UBAP1, ubiquitin associ 47.1 19 0.00066 25.1 3.5 40 219-266 20-59 (63)
28 3j20_Q 30S ribosomal protein S 45.7 18 0.00062 30.0 3.8 38 104-141 21-58 (158)
29 2knz_A Ubiquilin-4; cytoplasm, 45.0 18 0.00063 24.1 3.1 41 215-263 8-49 (53)
30 2jy5_A Ubiquilin-1; UBA, alter 43.9 21 0.00072 23.7 3.2 40 215-262 9-49 (52)
31 2dag_A Ubiquitin carboxyl-term 43.6 41 0.0014 24.1 5.0 41 219-266 10-50 (74)
32 2d9s_A CBL E3 ubiquitin protei 43.1 18 0.00062 24.4 2.7 25 217-241 8-32 (53)
33 1wji_A Tudor domain containing 42.4 18 0.00063 25.1 2.9 37 219-263 10-46 (63)
34 1vg5_A RSGI RUH-014, rhomboid 40.8 15 0.00053 26.4 2.3 40 216-263 27-66 (73)
35 2dai_A Ubadc1, ubiquitin assoc 40.1 42 0.0014 24.6 4.7 40 219-266 30-69 (83)
36 2e8o_A SAM domain and HD domai 39.8 1.1E+02 0.0038 23.0 7.3 23 82-104 30-55 (103)
37 2ekk_A UBA domain from E3 ubiq 39.8 20 0.00068 23.1 2.6 35 219-262 10-44 (47)
38 2dak_A Ubiquitin carboxyl-term 39.0 26 0.0009 24.1 3.3 40 218-265 9-48 (63)
39 2juj_A E3 ubiquitin-protein li 36.9 29 0.001 23.6 3.0 26 216-241 5-30 (56)
40 3dfg_A Xcrecx, regulatory prot 36.3 1.4E+02 0.0049 24.2 8.1 113 111-243 46-160 (162)
41 2cp8_A NEXT to BRCA1 gene 1 pr 34.3 19 0.00066 24.4 1.8 10 221-230 12-21 (54)
42 1vg5_A RSGI RUH-014, rhomboid 33.7 1E+02 0.0035 22.0 5.8 44 75-125 20-66 (73)
43 3e3v_A Regulatory protein RECX 33.3 1.3E+02 0.0044 24.9 7.4 113 111-241 47-162 (177)
44 2crn_A Ubash3A protein; compac 31.3 74 0.0025 22.0 4.6 39 221-266 12-50 (64)
45 3idw_A Actin cytoskeleton-regu 30.8 44 0.0015 24.0 3.3 52 119-175 5-60 (72)
46 1dv0_A DNA repair protein HHR2 30.6 16 0.00055 23.8 0.9 23 220-242 6-28 (47)
47 2bwb_A Ubiquitin-like protein 30.2 50 0.0017 21.3 3.3 40 215-262 4-44 (46)
48 3oq9_A Tumor necrosis factor r 29.9 1.5E+02 0.0052 21.7 6.4 45 116-163 12-56 (86)
49 1whc_A RSGI RUH-027, UBA/UBX 3 27.9 65 0.0022 22.2 3.8 39 221-266 12-50 (64)
50 3e3v_A Regulatory protein RECX 26.4 1E+02 0.0034 25.7 5.4 58 80-140 48-110 (177)
51 1wr1_B Ubiquitin-like protein 26.2 57 0.002 22.2 3.2 41 215-263 14-55 (58)
52 1vej_A Riken cDNA 4931431F19; 25.0 56 0.0019 23.5 3.1 41 215-263 26-67 (74)
53 2cpw_A CBL-interacting protein 24.7 55 0.0019 22.6 2.9 39 220-265 21-59 (64)
54 3d5l_A Regulatory protein RECX 24.6 2.1E+02 0.0072 24.5 7.4 26 216-241 180-205 (221)
55 2of5_A Death domain-containing 24.6 1.5E+02 0.0051 22.8 5.8 39 121-163 40-79 (114)
56 2o71_A Death domain-containing 24.0 1.6E+02 0.0055 22.7 5.9 39 121-163 40-79 (115)
57 4ayb_F DNA-directed RNA polyme 23.6 59 0.002 25.2 3.2 33 110-142 46-78 (113)
58 1ixs_A Holliday junction DNA h 23.4 64 0.0022 22.2 3.0 24 116-139 17-40 (62)
59 2kok_A Arsenate reductase; bru 23.3 1.1E+02 0.0037 23.4 4.8 13 85-97 19-31 (120)
60 1veg_A NEDD8 ultimate buster-1 23.1 1.4E+02 0.0047 22.0 4.9 37 85-125 30-66 (83)
61 1uxc_A FRUR (1-57), fructose r 23.1 1.5E+02 0.0051 20.2 5.0 46 225-272 7-52 (65)
62 2dah_A Ubiquilin-3; UBA domain 22.5 47 0.0016 22.3 2.1 40 216-263 7-47 (54)
63 1q08_A Zn(II)-responsive regul 21.7 78 0.0027 23.1 3.5 24 218-241 5-28 (99)
64 2dkl_A Trinucleotide repeat co 21.7 74 0.0025 23.4 3.3 38 219-264 22-59 (85)
65 2xvc_A ESCRT-III, SSO0910; cel 20.5 1.8E+02 0.006 19.9 4.6 39 128-175 10-48 (59)
66 1wj7_A Hypothetical protein (R 20.1 70 0.0024 24.6 2.9 40 216-263 37-77 (104)
67 1vek_A UBP14, ubiquitin-specif 20.0 85 0.0029 23.0 3.3 41 219-266 30-70 (84)
No 1
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=1.8e-43 Score=329.52 Aligned_cols=237 Identities=19% Similarity=0.340 Sum_probs=215.8
Q ss_pred cHHHHHHHHhhCCCChhhHhhhCCCc----ccCCcc-CHHHHHHHHHhCCCChHHHHHHHHhCcccccccccchhHHHHH
Q 037691 83 EFQEKMLYLDSIGVDFFSLINDHPPI----VSASLN-DIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTF 157 (337)
Q Consensus 83 ~l~~~v~fL~slG~di~~ii~~~P~l----L~~s~e-~l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~~~l~~~v~f 157 (337)
+-.++++||.++|++..++ .++|.+ +.++++ +++++++||+++|++.++|+++++++|++|.++.+++.++++|
T Consensus 4 ~~s~~l~~L~~lGv~~~~i-~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~l~p~v~~ 82 (270)
T 3m66_A 4 DHSETLQKLVLLGVDLSKI-EKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAY 82 (270)
T ss_dssp HHHHHHHHHHHTTCCHHHH-TTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHHHHHHHHH
T ss_pred cchHHHHHHHHcCCCHHHH-hhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHH
Confidence 4568999999999987775 455666 999987 7999999999999999999999999999999997679999999
Q ss_pred HHHHhcCChhHHHHHHHhCccccccchhhchhhHHHHH-hhhCCcc------cccccceeeccchhhHHHHHHHH-HHcC
Q 037691 158 LLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFL-QSMGIAE------VNKHTYLLSCSVEDKLIPRLQYF-QKIG 229 (337)
Q Consensus 158 L~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L-~~lG~~~------i~k~P~iL~~s~~~~l~~kv~fL-~~lG 229 (337)
|+ ++|++.++|.+++.++|++|+++++ +++++++|| +++|+++ +.++|++++.+. +.++++++++ .++|
T Consensus 83 L~-~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~-e~~~~~v~~l~~~~G 159 (270)
T 3m66_A 83 LH-SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSL-EPVKENMKVYRLELG 159 (270)
T ss_dssp HH-HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCS-HHHHHHHHHHHHTSC
T ss_pred HH-HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeech-HHHHHHHHHHHHHcC
Confidence 95 8999999999999999999999998 599999999 5799985 678999999985 6899999986 5899
Q ss_pred CCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhCCChhHHhhcCcccccCccchhHHHHHHHHH---cCCC------
Q 037691 230 FSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVD---KGVC------ 300 (337)
Q Consensus 230 ~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~~~~~I~~~P~~L~~Sle~rI~pR~~~L~~---~Gl~------ 300 (337)
|+.+||.+|+.++|++|++| +++|++|++||+++||++.++|+++|.+|+||+| ||+|||++|+. +|+.
T Consensus 160 ~s~~ei~~~v~~~P~il~~s-~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~ 237 (270)
T 3m66_A 160 FKHNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNY 237 (270)
T ss_dssp CCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSC
T ss_pred CCHHHHHHHHHhCChhheec-HHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCC
Confidence 99999999999999999999 5999999999999999999999999999999999 99999998776 4542
Q ss_pred CCchhhhccCHHHHHHHHchhcCCC
Q 037691 301 FPLNVLLKTSEAQFHRRLDVCCNSS 325 (337)
Q Consensus 301 ~~l~~ll~~se~~F~e~~~~~~~~~ 325 (337)
++|.+++.+||++|+++|++.+.|+
T Consensus 238 ~~L~~~l~~sd~~F~~~~~~~~~ee 262 (270)
T 3m66_A 238 ISLDKLVSIPDEIFCEEIAKASVQD 262 (270)
T ss_dssp CCHHHHHHSCHHHHHHHTTCSCHHH
T ss_pred CCHHHHhcCCHHHHHHHHhcCCHHH
Confidence 5788899999999999999887653
No 2
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=5.5e-42 Score=330.17 Aligned_cols=234 Identities=18% Similarity=0.345 Sum_probs=210.7
Q ss_pred ccHHHHHHHHhhCCC---ChhhHhhhCCCcccCCccCHHHHHHHHHhCCCChHHHHHHHHhCcc-ccccccc-chhHHHH
Q 037691 82 SEFQEKMLYLDSIGV---DFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPE-ILTSRAS-DILPVFT 156 (337)
Q Consensus 82 ~~l~~~v~fL~slG~---di~~ii~~~P~lL~~s~e~l~~~v~~L~~lG~s~~~i~~ii~~~P~-iL~~~~~-~l~~~v~ 156 (337)
++.+++++||.++|+ |+++++.++|.+|.++++++.++++||+++|+++++++++|.++|+ +++...+ ++.++++
T Consensus 49 ~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~ 128 (343)
T 3mva_O 49 TNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIK 128 (343)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHH
Confidence 466788899999999 5999999999999999889999999999999999999999999999 5555554 8999999
Q ss_pred HHHHHhcCChhHHHHHHHhCccccccchhhchhhHHHHHhhhCCc------c------cccccceeeccchhhHHHHHHH
Q 037691 157 FLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIA------E------VNKHTYLLSCSVEDKLIPRLQY 224 (337)
Q Consensus 157 fL~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L~~lG~~------~------i~k~P~iL~~s~~~~l~~kv~f 224 (337)
||+ ++|++.++|.+++.++|++|++++++ +++++++|+++|++ + +.++|.+++++ +++++++++|
T Consensus 129 fL~-~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~f 205 (343)
T 3mva_O 129 FLY-SVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEF 205 (343)
T ss_dssp HHH-HTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHH
T ss_pred HHH-HhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHH
Confidence 995 89999999999999999999999985 59999999987763 2 45678887776 6677766666
Q ss_pred HH-----------------------------------------HcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHH
Q 037691 225 FQ-----------------------------------------KIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVV 263 (337)
Q Consensus 225 L~-----------------------------------------~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~ 263 (337)
|+ ++||+++|+.+|+.++|+||++|. ++|++|++||.+
T Consensus 206 L~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~-~~l~~k~~fl~~ 284 (343)
T 3mva_O 206 LRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAE-KKFNDKIDCLME 284 (343)
T ss_dssp HHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCH-HHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccH-HHHHHHHHHHHH
Confidence 66 479999999999999999999995 789999999997
Q ss_pred hhCCChhHHhhcCcccccCccchhHHHHHHHHHcCCCCCch--hhhccCHHHHHHHHchh
Q 037691 264 GMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLN--VLLKTSEAQFHRRLDVC 321 (337)
Q Consensus 264 ~mG~~~~~I~~~P~~L~~Sle~rI~pR~~~L~~~Gl~~~l~--~ll~~se~~F~e~~~~~ 321 (337)
||++.++|+++|++|+||+| ||+|||++|+++|+++++. +||.+||++|.++|.+-
T Consensus 285 -mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~~~~~~~l~~s~~~F~~~~~~~ 342 (343)
T 3mva_O 285 -ENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKL 342 (343)
T ss_dssp -TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTCCSSSSCGGGGGSCHHHHHHHHHHT
T ss_pred -cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCCCCCCCcchhhcCCHHHHHHHHhcc
Confidence 99999999999999999999 9999999999999998888 99999999999999763
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=4.4e-35 Score=280.17 Aligned_cols=199 Identities=19% Similarity=0.336 Sum_probs=180.6
Q ss_pred CHHHHHHHHHhCCCChHHHHHHHHhCcccccccccchhHHHHHHHHHhcCChhHHHHHHHhCccccccchhhchhhHHHH
Q 037691 115 DIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYF 194 (337)
Q Consensus 115 ~l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~~~l~~~v~fL~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~ 194 (337)
+++..+..|+++|+++++|+++++++|+++.. ++.+++.||. .+|++.++|+++|.++|++|+++++ +|+++++|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~---~l~~~i~~L~-~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ---QLLDIISEFI-LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH---HHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh---HHHHHHHHHH-HcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 47788889999999999999999999998755 4778899994 7999999999999999999999997 69999999
Q ss_pred HhhhCCcc------cccccceeeccchhhHHHHHHHHH-HcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhCC
Q 037691 195 LQSMGIAE------VNKHTYLLSCSVEDKLIPRLQYFQ-KIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGR 267 (337)
Q Consensus 195 L~~lG~~~------i~k~P~iL~~s~~~~l~~kv~fL~-~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~ 267 (337)
|+++|+++ +.++|++++++. +.++.++.+|. ++||+.++|.+||.++|+||++| +++|++|++||+++||+
T Consensus 120 L~~lGl~~~~i~~ll~~~P~lL~~s~-e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~Mgl 197 (335)
T 4fp9_B 120 LQKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRMGI 197 (335)
T ss_dssp HHHTTCTTTTHHHHHHHCGGGGTSCH-HHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTTCC
T ss_pred HHHcCCCHHHHHHHHHhCchhhccCh-HHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHhCC
Confidence 99999974 678999999984 68999999997 79999999999999999999999 58999999999999999
Q ss_pred ChhHHhhcCcccccCccchhHHHHHHHHHcCCC-------------CCchhhhccCHHHHHHHHchhc
Q 037691 268 DLKELKEFPQYFSFSLENRIKPRHQACVDKGVC-------------FPLNVLLKTSEAQFHRRLDVCC 322 (337)
Q Consensus 268 ~~~~I~~~P~~L~~Sle~rI~pR~~~L~~~Gl~-------------~~l~~ll~~se~~F~e~~~~~~ 322 (337)
+.++|++ |.+|+||++ ||+|||.||+++|++ ++|.+++..||+.|++++...+
T Consensus 198 ~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s 263 (335)
T 4fp9_B 198 KHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTS 263 (335)
T ss_dssp CHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCC
T ss_pred CHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcC
Confidence 9999997 999999999 999999999999983 3689999999999999987654
No 4
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=99.98 E-value=2.9e-32 Score=262.36 Aligned_cols=231 Identities=13% Similarity=0.237 Sum_probs=194.0
Q ss_pred HHHHHHhhCCCChhhHhhhCCCcccCCccCHHHHHHHHHhCCCChHHHHHHHHhCcccccccccchhHHHHHHHHHhcCC
Q 037691 86 EKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVN 165 (337)
Q Consensus 86 ~~v~fL~slG~di~~ii~~~P~lL~~s~e~l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~~~l~~~v~fL~~~lGvs 165 (337)
.+++||.++|+++.++++++|.++..++++.+++++||+++|++.++|++++.++|++|..+.+++.++++||+ .+|++
T Consensus 21 ~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~-~lG~s 99 (343)
T 3mva_O 21 DLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWR-KIVTS 99 (343)
T ss_dssp CHHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHT-TTSSC
T ss_pred HHHHHHHHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHH-HcCCC
Confidence 45559999999999999999999999999999999999999999999999999999999999889999999995 89999
Q ss_pred hhHHHHHHHhCccc-cccchhhchhhHHHHHhhhCCcc------cccccceeeccchhhHHHHHHHHHHcCCC------H
Q 037691 166 GSDLKRVISRRPRL-LVSAVKTRLRPTLYFLQSMGIAE------VNKHTYLLSCSVEDKLIPRLQYFQKIGFS------K 232 (337)
Q Consensus 166 ~~~v~~li~~~P~l-L~~sv~~~l~~~v~~L~~lG~~~------i~k~P~iL~~s~~~~l~~kv~fL~~lG~s------~ 232 (337)
++++.++|.++|++ +.++.+++++++++||+++|+++ +.++|++++.+.+ .+++++++|+++|++ .
T Consensus 100 ~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e-~~~~~v~~L~~lgv~~g~~~p~ 178 (343)
T 3mva_O 100 DLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGLSLGHNDPA 178 (343)
T ss_dssp HHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHH-HhhHHHHHHHHhCCCcCCCcHH
Confidence 99999999999994 55554448999999999999985 5689999999865 559999999977664 7
Q ss_pred HHHhHHHhcCCcccccChhhhHHHHHHHHHHh----------------------------------------hCCChhH-
Q 037691 233 REATAMFRRFPQLFNYSVKDNYERKLNYFVVG----------------------------------------MGRDLKE- 271 (337)
Q Consensus 233 ~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~----------------------------------------mG~~~~~- 271 (337)
+.|.+|+.++|.+|++| +++++++++||.++ +|++.++
T Consensus 179 ~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev 257 (343)
T 3mva_O 179 DFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEV 257 (343)
T ss_dssp HHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 88999999999999999 89999999999853 4555554
Q ss_pred ---HhhcCcccccCccchhHHHHHHHHHcCCC----CCchhhhccCHHHHHHHHch
Q 037691 272 ---LKEFPQYFSFSLENRIKPRHQACVDKGVC----FPLNVLLKTSEAQFHRRLDV 320 (337)
Q Consensus 272 ---I~~~P~~L~~Sle~rI~pR~~~L~~~Gl~----~~l~~ll~~se~~F~e~~~~ 320 (337)
+.++|.+|++|.++ |+++++||.+.|+. ...+.++..|-++-..|+..
T Consensus 258 ~~~v~~~P~il~~s~~~-l~~k~~fl~~mg~~~~~i~~~P~~l~~sleri~~R~~~ 312 (343)
T 3mva_O 258 QKFVLSYPDVIFLAEKK-FNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKE 312 (343)
T ss_dssp HHHHHTCGGGGGSCHHH-HHHHHHHHHTTTCCHHHHHHSGGGGGSCHHHHHHHHHH
T ss_pred HHHHHhCCchhcccHHH-HHHHHHHHHHcCCCHHHHHhCCHHHhcCHHHHHHHHHH
Confidence 36777777777763 77777777777765 34556666666666555543
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.96 E-value=6.2e-29 Score=231.34 Aligned_cols=181 Identities=17% Similarity=0.387 Sum_probs=167.1
Q ss_pred CCCCccHHHHHHHHhhCCC---ChhhHhhhCCCcccCCccCHHHHHHHHHhCCCChHHHHHHHHhCcccccccccchhHH
Q 037691 78 NSPHSEFQEKMLYLDSIGV---DFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPV 154 (337)
Q Consensus 78 ~~~~~~l~~~v~fL~slG~---di~~ii~~~P~lL~~s~e~l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~~~l~~~ 154 (337)
.+++.+++++++||.++|+ ++++++.++|.++.+++++++++++||+++|++.++|++++.++|++|+.+.++++++
T Consensus 35 ~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~ 114 (270)
T 3m66_A 35 LDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNR 114 (270)
T ss_dssp CCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHH
T ss_pred cChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHH
Confidence 3567799999999999999 5999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHhcCChhHHHHHHHhCccccccchhhchhhHHHHH-hhhCCcc------cccccceeeccchhhHHHHHHHHH-
Q 037691 155 FTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFL-QSMGIAE------VNKHTYLLSCSVEDKLIPRLQYFQ- 226 (337)
Q Consensus 155 v~fL~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L-~~lG~~~------i~k~P~iL~~s~~~~l~~kv~fL~- 226 (337)
++||++++|++++++.+++.++|++++++.+ .++++++++ +++|+++ +.++|++++++. ++++++++||.
T Consensus 115 v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~-~~l~~k~~fL~~ 192 (270)
T 3m66_A 115 LGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFKHNEIQHMITRIPKMLTANK-MKLTETFDFVHN 192 (270)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecH-HHHHHHHHHHHH
Confidence 9999768999999999999999999999998 699999975 6899985 578999999984 89999999997
Q ss_pred HcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhC
Q 037691 227 KIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMG 266 (337)
Q Consensus 227 ~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG 266 (337)
++|++.++|. ++|++|++|+| +|++|+.|+. .+|
T Consensus 193 ~mg~~~~~i~----~~P~~l~~Sle-ri~pR~~~l~-~L~ 226 (270)
T 3m66_A 193 VMSIPHHIIV----KFPQVFNTRLF-KVKERHLFLT-YLG 226 (270)
T ss_dssp TSCCCHHHHH----HCGGGGGSCHH-HHHHHHHHHH-HHT
T ss_pred HhCCCHHHHH----hCchHhhCCHH-HHHHHHHHHH-Hhh
Confidence 7999998765 89999999985 9999999996 454
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.91 E-value=3.7e-24 Score=204.57 Aligned_cols=174 Identities=15% Similarity=0.241 Sum_probs=159.0
Q ss_pred ccHHHHHHHHhhCCC---ChhhHhhhCCCcccCCccCHHHHHHHHHhCCCChHHHHHHHHhCcccccccccchhHHHHHH
Q 037691 82 SEFQEKMLYLDSIGV---DFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFL 158 (337)
Q Consensus 82 ~~l~~~v~fL~slG~---di~~ii~~~P~lL~~s~e~l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~~~l~~~v~fL 158 (337)
..+++.+..|.++|| ++++++.++|.++. .++.+++.+|..+|++.++|+++|.++|++|+.++++++++++||
T Consensus 44 ~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~---~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL 120 (335)
T 4fp9_B 44 LELERVMSSLLDMGFSNAHINELLSVRRGASL---QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYL 120 (335)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH---HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCCHHHHHHHHHhCcccch---hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHH
Confidence 467899999999999 58999999999864 457899999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHhCccccccchhhchhhHHHHHh-hhCCcc------cccccceeeccchhhHHHHHHHHH-HcCC
Q 037691 159 LREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQ-SMGIAE------VNKHTYLLSCSVEDKLIPRLQYFQ-KIGF 230 (337)
Q Consensus 159 ~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L~-~lG~~~------i~k~P~iL~~s~~~~l~~kv~fL~-~lG~ 230 (337)
+ .+|++..++.+++.++|++|+++.+ .+..++.+|+ ++|+++ +.++|++|.++ .+.|++|++||. ++|+
T Consensus 121 ~-~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~Mgl 197 (335)
T 4fp9_B 121 Q-KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRMGI 197 (335)
T ss_dssp H-HTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTTCC
T ss_pred H-HcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHhCC
Confidence 5 7999999999999999999999998 6889999886 699985 67999999998 679999999999 8999
Q ss_pred CHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhCCC
Q 037691 231 SKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRD 268 (337)
Q Consensus 231 s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~~ 268 (337)
+.++|.+ |++|+||+ ++|++|+.||. .+|.-
T Consensus 198 ~~~eIvk-----P~~l~ySL-eRIkpRH~fL~-~lG~~ 228 (335)
T 4fp9_B 198 KHPDIVK-----SEYLQYSL-TKIKQRHIYLE-RLGRY 228 (335)
T ss_dssp CHHHHHH-----TTGGGSCH-HHHHHHHHHHH-HHTSC
T ss_pred CHHHccc-----cchhhccH-HHHHHHHHHHH-HcCCc
Confidence 9999863 99999998 59999999997 79883
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.47 E-value=1.8e-12 Score=108.17 Aligned_cols=153 Identities=22% Similarity=0.364 Sum_probs=134.2
Q ss_pred HhcCChhHHHHHHHhCccccccchhhchhhHHHHHhhhCCcc------cccccceeeccchhhHHHHHHHHH-HcCCCHH
Q 037691 161 EAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAE------VNKHTYLLSCSVEDKLIPRLQYFQ-KIGFSKR 233 (337)
Q Consensus 161 ~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L~~lG~~~------i~k~P~iL~~s~~~~l~~kv~fL~-~lG~s~~ 233 (337)
-+|++++-++-++.+.|++|...+- .++.+-.||+.+|+.+ +--+|.++... ...+...+..|. ++-|+..
T Consensus 42 llglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmr-qqdindtvrllkekclftvq 119 (239)
T 4fzv_B 42 LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR-QQDINDTVRLLKEKCLFTVQ 119 (239)
T ss_dssp HHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSC-HHHHHHHHHHHHHHSCCCHH
T ss_pred hhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHH-HhhHhHHHHHHHHhHHhhHH
Confidence 5899999999999999999998886 6888889999988876 23478888775 578889999998 6889999
Q ss_pred HHhHHHhcCCcccccChhhhHHHHHHHHHHhhCCChhHHhhcCcccccCccchhHHHHHHHHHcCCC-------------
Q 037691 234 EATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVC------------- 300 (337)
Q Consensus 234 ~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~~~~~I~~~P~~L~~Sle~rI~pR~~~L~~~Gl~------------- 300 (337)
++.+++..+|.++.-++ ..++.|++|-.-.||+..-+|++. .+|.||+. +|+.|+-+|.+.|.+
T Consensus 120 qvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtpdkkgqtqipn 196 (239)
T 4fzv_B 120 QVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPN 196 (239)
T ss_dssp HHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCC
T ss_pred HHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCC
Confidence 99999999999999997 899999999888999999999884 79999998 699999999999973
Q ss_pred CCchhhhccCHHHHHHHH
Q 037691 301 FPLNVLLKTSEAQFHRRL 318 (337)
Q Consensus 301 ~~l~~ll~~se~~F~e~~ 318 (337)
+-+..+++.||.+|+++-
T Consensus 197 pllkdilrvseaeflart 214 (239)
T 4fzv_B 197 PLLKDILRVSEAEFLART 214 (239)
T ss_dssp CCHHHHHTSCHHHHHHHT
T ss_pred hHHHHHHHHhHHHHHHHH
Confidence 246789999999999874
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.45 E-value=1.1e-06 Score=73.37 Aligned_cols=142 Identities=15% Similarity=0.291 Sum_probs=118.6
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHhCcccccccccchhHHHHHHHHHhcCChhHHHHHHHhCccccccchhhchhhHHHHH
Q 037691 116 IKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFL 195 (337)
Q Consensus 116 l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~~~l~~~v~fL~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L 195 (337)
+-..+.-+.-+|++++-++.++.+.|.+|....-.+..+-.||+ .+|+.+..+.+++-.+|.++++... ++...+..|
T Consensus 33 lldiisefillglnpepvcvvlkkspqllklpimqmrkrssylq-klglgegklkrvlyccpeiftmrqq-dindtvrll 110 (239)
T 4fzv_B 33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQ-KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLL 110 (239)
T ss_dssp TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHHHHHHHHHHH-HHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHHHHHHHHHHH-HhCCCccchhhheecCcHHHHHHHh-hHhHHHHHH
Confidence 33455566668999999999999999999998888999999995 7999999999999999999999876 688899999
Q ss_pred hh-hCCc--c----cccccceeeccchhhHHHHHHHHH-HcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhCC
Q 037691 196 QS-MGIA--E----VNKHTYLLSCSVEDKLIPRLQYFQ-KIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGR 267 (337)
Q Consensus 196 ~~-lG~~--~----i~k~P~iL~~s~~~~l~~kv~fL~-~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~ 267 (337)
++ +-++ . +..+|.++..+. ..++-+++|-. ++|+...+|.+ ..-+.||+ .+++.+.-|+. .+|.
T Consensus 111 kekclftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk-----seylqysl-tkikqrhiyle-rlgr 182 (239)
T 4fzv_B 111 KEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK-----SEYLQYSL-TKIKQRHIYLE-RLGR 182 (239)
T ss_dssp HHHSCCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH-----TTGGGSCH-HHHHHHHHHHH-HHTC
T ss_pred HHhHHhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH-----HHHHHHHH-HHHHHHHhHHH-Hhcc
Confidence 87 3343 2 346899998875 68999999988 89999998864 46789997 89999999995 7876
No 9
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=80.22 E-value=1.8 Score=29.64 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHcCCCHHHHhHHHhc
Q 037691 217 KLIPRLQYFQKIGFSKREATAMFRR 241 (337)
Q Consensus 217 ~l~~kv~fL~~lG~s~~~i~~ml~~ 241 (337)
.+..|++||++-|++.+||..++.+
T Consensus 29 p~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 29 PLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4789999999999999999988876
No 10
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=78.05 E-value=2.5 Score=28.87 Aligned_cols=33 Identities=3% Similarity=0.120 Sum_probs=26.5
Q ss_pred hCCCcccCCccCHHHHHHHHHhCCCChHHHHHHHHh
Q 037691 104 DHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSM 139 (337)
Q Consensus 104 ~~P~lL~~s~e~l~~~v~~L~~lG~s~~~i~~ii~~ 139 (337)
.+|.+-... +..+++||++.|++.++|...+.+
T Consensus 21 ~dp~V~~sp---~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 21 QNSRVRQSP---LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HCTTGGGSC---HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CChhhhcCC---HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 466665433 679999999999999999988875
No 11
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=74.98 E-value=18 Score=28.49 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=53.7
Q ss_pred HHHHHHHhhCCCChhhHhhhCCCcccCCccCHHHHHHHHH------hCCCChHHHHHHHHhCcccccccccchhHHHHHH
Q 037691 85 QEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLIT------SLDFAAAEFRRIVSMCPEILTSRASDILPVFTFL 158 (337)
Q Consensus 85 ~~~v~fL~slG~di~~ii~~~P~lL~~s~e~l~~~v~~L~------~lG~s~~~i~~ii~~~P~iL~~~~~~l~~~v~fL 158 (337)
++.|+-|.++||....+.+.- .... .+.+..++||. +.|++..++...+..+..--.. .......+.-|
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl---~~~g-~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~-~~~~~~~v~~L 83 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAM---KAAG-ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEK-MMEFLQLMSKF 83 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH---HHHC-SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH---HHHC-cCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccc-cccCHHHHHHH
Confidence 456778888888543332210 0111 14556666554 4577777777777654210000 01122345556
Q ss_pred HHHhcCChhHHHHHHHhCccccccchhhchhhHHHHHhh
Q 037691 159 LREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQS 197 (337)
Q Consensus 159 ~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L~~ 197 (337)
.++||+.+.+.+.|..+- .++...++||..
T Consensus 84 -~eMGF~~~~a~~AL~~~~--------nd~erAlewL~~ 113 (118)
T 4ae4_A 84 -KEMGFELKDIKEVLLLHN--------NDQDNALEDLMA 113 (118)
T ss_dssp -HHTTCCHHHHHHHHHHTT--------TCHHHHHHHHHH
T ss_pred -HHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHH
Confidence 378888888888877643 245566666643
No 12
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=71.72 E-value=3.6 Score=29.56 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHcCCCHHHHhHHHhcC
Q 037691 217 KLIPRLQYFQKIGFSKREATAMFRRF 242 (337)
Q Consensus 217 ~l~~kv~fL~~lG~s~~~i~~ml~~~ 242 (337)
.+..|++||++-|++.+||..++.+.
T Consensus 34 p~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 34 PLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 47899999999999999999988874
No 13
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=68.59 E-value=5.1 Score=28.79 Aligned_cols=34 Identities=3% Similarity=0.123 Sum_probs=27.6
Q ss_pred hCCCcccCCccCHHHHHHHHHhCCCChHHHHHHHHhC
Q 037691 104 DHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMC 140 (337)
Q Consensus 104 ~~P~lL~~s~e~l~~~v~~L~~lG~s~~~i~~ii~~~ 140 (337)
.+|.+-... +..+++||++.|++.++|...+.+.
T Consensus 26 qdp~V~~sp---~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 26 QNSRVRQSP---LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CSTTGGGSC---HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CChhhhhCC---HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 466665433 6799999999999999999998874
No 14
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=63.27 E-value=18 Score=34.33 Aligned_cols=39 Identities=10% Similarity=0.202 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhh
Q 037691 219 IPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGM 265 (337)
Q Consensus 219 ~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~m 265 (337)
+..|+-|..+||+++.+.+.+..|- ++.+.-.+||...+
T Consensus 326 ~eaI~rL~~mGF~~~~a~~al~a~~--------~n~e~A~~~L~~~~ 364 (368)
T 1oqy_A 326 KEAIERLKALGFPESLVIQAYFACE--------KNENLAANFLLSQN 364 (368)
T ss_dssp HHHHHHHHHHTCCSHHHHHHTSSSS--------SCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHhhCc
Confidence 4678888999999988887665442 33444456665433
No 15
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=63.26 E-value=8.9 Score=31.68 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=45.4
Q ss_pred hCCCcccCCccCHHHHHHHHHhCCCChHHHHHHHHhCcccccccccchhHHHHHHHHHhcCC---hhHHHHHHHh
Q 037691 104 DHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVN---GSDLKRVISR 175 (337)
Q Consensus 104 ~~P~lL~~s~e~l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~~~l~~~v~fL~~~lGvs---~~~v~~li~~ 175 (337)
..|.-+..+.++++..+--|..-|+++++||-++...=.|=....-+=......| ++-|+. ++++..+|.+
T Consensus 23 ~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rIL-k~~glapeiPEDL~~LikK 96 (153)
T 2xzm_O 23 RSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRIL-KKNGCAPQLPEDLYFLIKK 96 (153)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHH-HHTTCCCSSCHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHH-HHcCCCCCCcHHHHHHHHH
Confidence 4677788888999999999999999999999999876322211100111223455 456664 3455555544
No 16
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=62.06 E-value=18 Score=24.13 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=26.6
Q ss_pred CCCccHHHHHHHHhhCCC-ChhhHhhhCCCcccCCccCHHHHHHHHHhCC
Q 037691 79 SPHSEFQEKMLYLDSIGV-DFFSLINDHPPIVSASLNDIKSTVDLITSLD 127 (337)
Q Consensus 79 ~~~~~l~~~v~fL~slG~-di~~ii~~~P~lL~~s~e~l~~~v~~L~~lG 127 (337)
.|+...++.|+-|.++|| +-...+.. |...-.+++..++||.+.+
T Consensus 6 ~pe~~~~~~l~~L~~MGF~~~~~~~~A----L~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 6 MPEVRFQQQLEQLNSMGFINREANLQA----LIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp CTHHHHHHHHHHHHTTTCCCHHHHHHH----HHHHTSCHHHHHHHHHHCC
T ss_pred ChhhHHHHHHHHHHHcCCCCHHHHHHH----HHHhCCCHHHHHHHHHHcC
Confidence 356677788888888888 54332211 1111136777777777654
No 17
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=59.32 E-value=9.7 Score=25.09 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHH
Q 037691 216 DKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVV 263 (337)
Q Consensus 216 ~~l~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~ 263 (337)
..-..+++-|.++||+++++...++.+- .+++.-++||..
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~--------~n~e~A~e~L~~ 45 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTT--------SCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHh
Confidence 3467789999999999999999888643 235556777764
No 18
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=59.29 E-value=12 Score=30.95 Aligned_cols=71 Identities=10% Similarity=0.148 Sum_probs=45.3
Q ss_pred hCCCcccCCccCHHHHHHHHHhCCCChHHHHHHHHhCcccccccccchhHHHHHHHHHhcCC---hhHHHHHHHh
Q 037691 104 DHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVN---GSDLKRVISR 175 (337)
Q Consensus 104 ~~P~lL~~s~e~l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~~~l~~~v~fL~~~lGvs---~~~v~~li~~ 175 (337)
..|.=+..+.++++..+--|..-|+++++|+-++...=.|=....-+=....+.| ++-|+. ++++..+|.+
T Consensus 21 ~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rIL-k~~glapeiPEDL~~LikK 94 (151)
T 3u5c_N 21 NAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRIL-KSNGLAPEIPEDLYYLIKK 94 (151)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHH-HHTTCCCSSCHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeecccHHHHHH-HhCCCCCCCcHHHHHHHHH
Confidence 4577788888899999999999999999999999775222111100111233455 456664 3455555544
No 19
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=57.48 E-value=67 Score=25.15 Aligned_cols=39 Identities=13% Similarity=0.369 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhC
Q 037691 220 PRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMG 266 (337)
Q Consensus 220 ~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG 266 (337)
+.+.-|.++||+.+++.+.++.+ ...+..-+++|....|
T Consensus 78 ~~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 78 QLMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHhcc
Confidence 56778888999999998877653 3566777777765544
No 20
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=57.24 E-value=17 Score=24.62 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhCCC
Q 037691 219 IPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRD 268 (337)
Q Consensus 219 ~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~~ 268 (337)
+..++-|.++||+++-+...+++- . .+.|++.++||. +|+++
T Consensus 10 ~qmlq~L~eMGFd~erae~Alk~T------g-~~Gle~AmewL~-k~~~~ 51 (54)
T 2cos_A 10 RQMLQELVNAGCDQEMAGRALKQT------G-SRSIEAALEYIS-KMSGP 51 (54)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH------T-SCCHHHHHHHHH-HHSCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh------C-cccHHHHHHHHH-HhcCC
Confidence 344778888999988777766641 2 245888999886 68775
No 21
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=56.71 E-value=19 Score=26.69 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhCC
Q 037691 219 IPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGR 267 (337)
Q Consensus 219 ~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~ 267 (337)
..+|+-|..|||+++++.+.++..- .+++.-++||....|-
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~--------gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG--------GNVQLAAQTLAHHGGS 70 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT--------TCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHhCCCC
Confidence 5788999999999999999887532 3478889999887773
No 22
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=52.06 E-value=15 Score=22.50 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCCHHHHhHHHhcC
Q 037691 218 LIPRLQYFQKIGFSKREATAMFRRF 242 (337)
Q Consensus 218 l~~kv~fL~~lG~s~~~i~~ml~~~ 242 (337)
....|+-|.++||++++..+.+..+
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 3567888999999999998877654
No 23
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=51.65 E-value=8.9 Score=24.32 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHH
Q 037691 219 IPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFV 262 (337)
Q Consensus 219 ~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~ 262 (337)
...|+-|.++||+++++.+.+..+ ..+++.-++||.
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~L~ 40 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKC--------NWDLEAATNFLL 40 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHH--------TSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CcCHHHHHHHHH
Confidence 356888999999999998887753 124555566664
No 24
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=49.02 E-value=15 Score=24.78 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHcCCCHHHHhHHHhc
Q 037691 217 KLIPRLQYFQKIGFSKREATAMFRR 241 (337)
Q Consensus 217 ~l~~kv~fL~~lG~s~~~i~~ml~~ 241 (337)
.+...|+-|.++||+++++.+.+..
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4557899999999999999887764
No 25
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=47.88 E-value=19 Score=23.59 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHcCCCHHHHhHHHh
Q 037691 217 KLIPRLQYFQKIGFSKREATAMFR 240 (337)
Q Consensus 217 ~l~~kv~fL~~lG~s~~~i~~ml~ 240 (337)
.+...|.-|.++||+++++.+.+.
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ 26 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALV 26 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHH
Confidence 577889999999999999987664
No 26
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=47.32 E-value=28 Score=24.94 Aligned_cols=39 Identities=10% Similarity=0.190 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHh
Q 037691 218 LIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVG 264 (337)
Q Consensus 218 l~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~ 264 (337)
-..+|+-|.++||+++++.+.++.+- .+++.-++||...
T Consensus 29 ~~~~v~~L~~MGF~~~~a~~AL~~t~--------~nve~Ave~L~~~ 67 (73)
T 1wiv_A 29 DQSSVDTLLSFGFAEDVARKALKASG--------GDIEKATDWVFNN 67 (73)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTT--------SCHHHHHHHHHHS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHhC
Confidence 35678899999999999998887632 3466677887653
No 27
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=47.13 E-value=19 Score=25.10 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhC
Q 037691 219 IPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMG 266 (337)
Q Consensus 219 ~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG 266 (337)
...|+-|..+||+.++..+.++.. ..+++.-++||-..+.
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat--------~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhCCC
Confidence 456889999999999999988763 3568888888876553
No 28
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.70 E-value=18 Score=30.03 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=31.0
Q ss_pred hCCCcccCCccCHHHHHHHHHhCCCChHHHHHHHHhCc
Q 037691 104 DHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCP 141 (337)
Q Consensus 104 ~~P~lL~~s~e~l~~~v~~L~~lG~s~~~i~~ii~~~P 141 (337)
..|.=+.++.|+++..|--|..-|+++++|+.++...-
T Consensus 21 ~~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~ 58 (158)
T 3j20_Q 21 APPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQY 58 (158)
T ss_dssp SCCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccC
Confidence 45667778888888888888889999999998887763
No 29
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=44.97 E-value=18 Score=24.11 Aligned_cols=41 Identities=10% Similarity=0.236 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHcCC-CHHHHhHHHhcCCcccccChhhhHHHHHHHHHH
Q 037691 215 EDKLIPRLQYFQKIGF-SKREATAMFRRFPQLFNYSVKDNYERKLNYFVV 263 (337)
Q Consensus 215 ~~~l~~kv~fL~~lG~-s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~ 263 (337)
+.....+++-|.++|| +++.+.+.+... ..+++.-++||..
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gnve~Ave~L~~ 49 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIAT--------GGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 5677889999999999 888777776642 2346667777753
No 30
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=43.90 E-value=21 Score=23.74 Aligned_cols=40 Identities=10% Similarity=0.261 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHcCC-CHHHHhHHHhcCCcccccChhhhHHHHHHHHH
Q 037691 215 EDKLIPRLQYFQKIGF-SKREATAMFRRFPQLFNYSVKDNYERKLNYFV 262 (337)
Q Consensus 215 ~~~l~~kv~fL~~lG~-s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~ 262 (337)
+.....+++-|.++|| +++.+.+.+... ..+++.-++||.
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gn~e~A~e~L~ 49 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALIAT--------GGDINAAIERLL 49 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHHHH--------TTCHHHHHHHHT
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 4567888999999999 777777766542 124555566653
No 31
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.63 E-value=41 Score=24.07 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhC
Q 037691 219 IPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMG 266 (337)
Q Consensus 219 ~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG 266 (337)
...++-|.++||+++++.+.++.+-. ..++.-++||.+.++
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n-------~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTGN-------SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHTS-------CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-------CCHHHHHHHHHhCCC
Confidence 45678888999999999888875311 247788899987654
No 32
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=43.06 E-value=18 Score=24.42 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHcCCCHHHHhHHHhc
Q 037691 217 KLIPRLQYFQKIGFSKREATAMFRR 241 (337)
Q Consensus 217 ~l~~kv~fL~~lG~s~~~i~~ml~~ 241 (337)
....+|+-|.++||+++++.+.+..
T Consensus 8 ~~e~~I~~L~~lGF~r~~ai~AL~~ 32 (53)
T 2d9s_A 8 QLSSEIERLMSQGYSYQDIQKALVI 32 (53)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4556799999999999999887754
No 33
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.44 E-value=18 Score=25.12 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHH
Q 037691 219 IPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVV 263 (337)
Q Consensus 219 ~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~ 263 (337)
...|+-|.++||+++++.+.++.+ ..+++.-++||..
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~--------~~nve~A~e~L~~ 46 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 466888999999999998887764 2346677788875
No 34
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=40.80 E-value=15 Score=26.44 Aligned_cols=40 Identities=10% Similarity=0.228 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHH
Q 037691 216 DKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVV 263 (337)
Q Consensus 216 ~~l~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~ 263 (337)
...+.+|+-|.+|||+++++...++.+ ..+++.-++||..
T Consensus 27 ~~~ee~I~~L~eMGF~r~~a~~AL~~~--------~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 27 AASEEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMS 66 (73)
T ss_dssp CCCHHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 456788999999999999999988853 2357777888864
No 35
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.08 E-value=42 Score=24.64 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhC
Q 037691 219 IPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMG 266 (337)
Q Consensus 219 ~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG 266 (337)
...++-|.++||+++++.+.++.+ . .+++.-++||.+.++
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t----~----~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLN----H----MSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT----T----SCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh----C----CCHHHHHHHHHHCCC
Confidence 456888889999999999888764 1 356777889887654
No 36
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.84 E-value=1.1e+02 Score=22.97 Aligned_cols=23 Identities=13% Similarity=0.181 Sum_probs=15.4
Q ss_pred ccHHHHHHHHhhCCC-C--hhhHhhh
Q 037691 82 SEFQEKMLYLDSIGV-D--FFSLIND 104 (337)
Q Consensus 82 ~~l~~~v~fL~slG~-d--i~~ii~~ 104 (337)
=..+++.+||+++|+ + .......
T Consensus 30 Ws~~~V~~WL~~lgl~~~~y~~~F~~ 55 (103)
T 2e8o_A 30 WGPEQVCSFLRRGGFEEPVLLKNIRE 55 (103)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCChHHHHHHHHH
Confidence 345778889999888 4 4554443
No 37
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.79 E-value=20 Score=23.13 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHH
Q 037691 219 IPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFV 262 (337)
Q Consensus 219 ~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~ 262 (337)
...++-|.++||+++++.+.++.. . + ++.-++||.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~-~----n----~e~A~~~L~ 44 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT-S----T----MEQATEYLL 44 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS-C----S----HHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-C----C----HHHHHHHHH
Confidence 456888999999999999988875 1 3 445566664
No 38
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.98 E-value=26 Score=24.14 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhh
Q 037691 218 LIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGM 265 (337)
Q Consensus 218 l~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~m 265 (337)
-...++-|.++||+++++.+.++.+- .+++.-++||...+
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~--------~nve~A~e~L~~~~ 48 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATN--------NSLERAVDWIFSHI 48 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTT--------SCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHhCC
Confidence 35678889999999999999888752 23566778887654
No 39
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=36.92 E-value=29 Score=23.56 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHcCCCHHHHhHHHhc
Q 037691 216 DKLIPRLQYFQKIGFSKREATAMFRR 241 (337)
Q Consensus 216 ~~l~~kv~fL~~lG~s~~~i~~ml~~ 241 (337)
......|+-|.++||+++++.+.+..
T Consensus 5 ~p~e~~Ia~L~smGfsr~da~~AL~i 30 (56)
T 2juj_A 5 PQLSSEIENLMSQGYSYQDIQKALVI 30 (56)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCHHHHHHHHHH
Confidence 35677899999999999999877653
No 40
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=36.35 E-value=1.4e+02 Score=24.24 Aligned_cols=113 Identities=9% Similarity=0.019 Sum_probs=63.5
Q ss_pred CCccCHHHHHHHHHhCCCC-hHHHHHHHHhCcccccccccchhHHHHHHHHHhcCChhHHHHHHHhCccccccchhhchh
Q 037691 111 ASLNDIKSTVDLITSLDFA-AAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLR 189 (337)
Q Consensus 111 ~s~e~l~~~v~~L~~lG~s-~~~i~~ii~~~P~iL~~~~~~l~~~v~fL~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~ 189 (337)
++.+.+...++.|.+.|+= +..++..+.+.=.-=+.+...| ..-| ..-|++.+.|..++.... .+ -..
T Consensus 46 ~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~~G~~~I---~~eL-~~KGI~~~~I~~al~~~~------~d-e~e 114 (162)
T 3dfg_A 46 IEPEAAQAAVERLAGEGWQDDVRFAASVVRNRASSGYGPLHI---RAEL-GTHGLDSDAVSAAMATFE------GD-WTE 114 (162)
T ss_dssp CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTTCCHHHH---HHHH-HHTTCCHHHHHHHHTTCC------SC-HHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccHHHH---HHHH-HHcCCCHHHHHHHHHhCc------Hh-HHH
Confidence 4556789999999998854 5555555433210001111222 2334 467999999999887643 11 122
Q ss_pred hHHHHHhh-hCCcccccccceeeccchhhHHHHHHHHHHcCCCHHHHhHHHhcCC
Q 037691 190 PTLYFLQS-MGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFP 243 (337)
Q Consensus 190 ~~v~~L~~-lG~~~i~k~P~iL~~s~~~~l~~kv~fL~~lG~s~~~i~~ml~~~P 243 (337)
.....++. +|- +.| .....-+..+.||.+-||+.+.|..++...|
T Consensus 115 ~a~~l~~Kk~~~----~~~-----~~~~~k~K~~~~L~rrGF~~~~I~~~l~~~~ 160 (162)
T 3dfg_A 115 NALDLIRRRFGE----DGP-----VDLAQRRKAADLLARRGFDGNSIRLATRFDL 160 (162)
T ss_dssp HHHHHHHHHHCT----TCC-----CSHHHHHHHHHHHHHTTCCHHHHHHHTTC--
T ss_pred HHHHHHHHhcCC----CCC-----CCHHHHHHHHHHHHHCCCCHHHHHHHHhcCc
Confidence 22233322 321 111 1123345667899999999999998876544
No 41
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.31 E-value=19 Score=24.43 Aligned_cols=10 Identities=20% Similarity=0.497 Sum_probs=4.2
Q ss_pred HHHHHHHcCC
Q 037691 221 RLQYFQKIGF 230 (337)
Q Consensus 221 kv~fL~~lG~ 230 (337)
+++-|.++||
T Consensus 12 ~L~~L~eMGF 21 (54)
T 2cp8_A 12 LMAHLFEMGF 21 (54)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHcCC
Confidence 3444444444
No 42
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=33.74 E-value=1e+02 Score=22.01 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=28.7
Q ss_pred CCCCCCCccHHHHHHHHhhCCCChhh---HhhhCCCcccCCccCHHHHHHHHHh
Q 037691 75 PPPNSPHSEFQEKMLYLDSIGVDFFS---LINDHPPIVSASLNDIKSTVDLITS 125 (337)
Q Consensus 75 ~~~~~~~~~l~~~v~fL~slG~di~~---ii~~~P~lL~~s~e~l~~~v~~L~~ 125 (337)
+++...+...++.|+-|.++||+-.. ++.++ -.+++..++||.+
T Consensus 20 ~~~~~~~~~~ee~I~~L~eMGF~r~~a~~AL~~~-------~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 20 PQSQGRVAASEEQIQKLVAMGFDRTQVEVALAAA-------DDDLTVAVEILMS 66 (73)
T ss_dssp SSSCCCSCCCHHHHHHHHTTTCCHHHHHHHHHHH-------TSCHHHHHHHHHT
T ss_pred CCCccCCcccHHHHHHHHHcCCCHHHHHHHHHHh-------CCCHHHHHHHHHH
Confidence 34445566778888899999996433 33322 1367788888876
No 43
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=33.25 E-value=1.3e+02 Score=24.92 Aligned_cols=113 Identities=11% Similarity=0.034 Sum_probs=60.8
Q ss_pred CCccCHHHHHHHHHhCCC-ChHHHHHHHHhCccccc-ccccchhHHHHHHHHHhcCChhHHHHHHHhCccccccchhhch
Q 037691 111 ASLNDIKSTVDLITSLDF-AAAEFRRIVSMCPEILT-SRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRL 188 (337)
Q Consensus 111 ~s~e~l~~~v~~L~~lG~-s~~~i~~ii~~~P~iL~-~~~~~l~~~v~fL~~~lGvs~~~v~~li~~~P~lL~~sv~~~l 188 (337)
++.+.+..+++.|.+.|+ ++..++..+.+.=.-.+ .+...|.. -| ..-|++.+.|..++...+ -+.-+
T Consensus 47 ~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~---eL-~~KGI~~~~I~~al~~~~------~~de~ 116 (177)
T 3e3v_A 47 IHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKL---NL-SKKGIDDNIAEDALILYT------DKLQV 116 (177)
T ss_dssp CCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHH---HH-HTTTCCHHHHHHHHTTSC------HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHH---HH-HHcCCCHHHHHHHHHhCC------chhHH
Confidence 455568889999998774 56666666544311111 11122322 23 357999888888886432 11112
Q ss_pred hhHHHHHhh-hCCcccccccceeeccchhhHHHHHHHHHHcCCCHHHHhHHHhc
Q 037691 189 RPTLYFLQS-MGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRR 241 (337)
Q Consensus 189 ~~~v~~L~~-lG~~~i~k~P~iL~~s~~~~l~~kv~fL~~lG~s~~~i~~ml~~ 241 (337)
......++. +|- .+. .+..+.-+..+.||.+-||+.+.|..++..
T Consensus 117 e~a~~l~~Kk~~~-----~~~---~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~ 162 (177)
T 3e3v_A 117 EKGVTLAEKLANR-----YSH---DSYRNKQNKIKQSLLTKGFSYDIIDTIIQE 162 (177)
T ss_dssp HHHHHHHHHHHHH-----TTT---SCHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-----ccC---CChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 222222222 110 000 111223445577999999999999887754
No 44
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.28 E-value=74 Score=22.03 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=28.6
Q ss_pred HHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhC
Q 037691 221 RLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMG 266 (337)
Q Consensus 221 kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG 266 (337)
.++-|.++||+++.+.+.+...- + ..++.-++||.+.+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~-----n--~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATG-----R--KTAEEALAWLHDHCN 50 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHT-----S--CCHHHHHHHHHHHSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC-----C--CCHHHHHHHHHhCCC
Confidence 46778899999999988876421 1 257888889887654
No 45
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=30.83 E-value=44 Score=23.99 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=28.6
Q ss_pred HHHHHHhCCCChHHHHHHHHhCccccccc-c-cchhHHH--HHHHHHhcCChhHHHHHHHh
Q 037691 119 TVDLITSLDFAAAEFRRIVSMCPEILTSR-A-SDILPVF--TFLLREAKVNGSDLKRVISR 175 (337)
Q Consensus 119 ~v~~L~~lG~s~~~i~~ii~~~P~iL~~~-~-~~l~~~v--~fL~~~lGvs~~~v~~li~~ 175 (337)
.++||.+.|++...-.+. -..|..+ . +++.+-+ ++| +++|+...+|.++++.
T Consensus 5 Wf~FFl~aGv~~~~c~rY----A~~F~~~ri~e~mL~Dl~~~~L-r~LGi~eGDIIrVmk~ 60 (72)
T 3idw_A 5 WFEFFLNCGVDVSNCQRY----TINFDREQLTEDMMPDINNSML-RTLGLREGDIVRVMKH 60 (72)
T ss_dssp HHHHHHHTTCCHHHHHHH----HHHHHHTTCCGGGGGGCCHHHH-HHTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHH----HHHHHHccCCHHHHhhCCHHHH-HHcCCchhhHHHHHHH
Confidence 567888888886543322 2223332 1 2232222 667 4788887777776653
No 46
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=30.56 E-value=16 Score=23.83 Aligned_cols=23 Identities=9% Similarity=0.274 Sum_probs=18.0
Q ss_pred HHHHHHHHcCCCHHHHhHHHhcC
Q 037691 220 PRLQYFQKIGFSKREATAMFRRF 242 (337)
Q Consensus 220 ~kv~fL~~lG~s~~~i~~ml~~~ 242 (337)
..|+-|..+||++.++.+.+..+
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a~ 28 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFAC 28 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc
Confidence 45777888999999988776654
No 47
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=30.23 E-value=50 Score=21.27 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHcCCCH-HHHhHHHhcCCcccccChhhhHHHHHHHHH
Q 037691 215 EDKLIPRLQYFQKIGFSK-REATAMFRRFPQLFNYSVKDNYERKLNYFV 262 (337)
Q Consensus 215 ~~~l~~kv~fL~~lG~s~-~~i~~ml~~~P~IL~~sle~~L~~k~~fL~ 262 (337)
++..+.+++-|.++||+. +.+.+.+... ..+++.-++||.
T Consensus 4 ~~~~~~~i~~L~~MGF~d~~~~~~AL~~~--------~gnv~~Ave~L~ 44 (46)
T 2bwb_A 4 EERYEHQLRQLNDMGFFDFDRNVAALRRS--------GGSVQGALDSLL 44 (46)
T ss_dssp HHHTHHHHHHHHHTTCCCHHHHHHHHHHH--------TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 456788899999999964 4455555431 234555566553
No 48
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=29.88 E-value=1.5e+02 Score=21.72 Aligned_cols=45 Identities=7% Similarity=0.070 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHhCcccccccccchhHHHHHHHHHhc
Q 037691 116 IKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAK 163 (337)
Q Consensus 116 l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~~~l~~~v~fL~~~lG 163 (337)
+...-+|.+.+|+++.+|..|-..+|.=+ .+.....+.-|.+..|
T Consensus 12 ~~~wK~~~R~LGlse~~Id~I~~~~~~d~---~Eq~~qmL~~W~~~~g 56 (86)
T 3oq9_A 12 IQEAKKFARENNIKEGKIDEIMHDSIQDT---AEQKVQLLLCWYQSHG 56 (86)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHTCTTCC---TTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCHhHHHHHHHhCCCCh---HHHHHHHHHHHHHHhC
Confidence 56677888999999999999999998522 2455555665654455
No 49
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.86 E-value=65 Score=22.24 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=28.4
Q ss_pred HHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhC
Q 037691 221 RLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMG 266 (337)
Q Consensus 221 kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG 266 (337)
.|+-|.++||+++++.+.++.+ .+ .+++.-++||.+.+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t-----~~--~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 12 ALESLIEMGFPRGRAEKALALT-----GN--QGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH-----TS--CCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHh-----cC--CCHHHHHHHHHhCCC
Confidence 4677889999999998888732 11 357778888886554
No 50
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=26.36 E-value=1e+02 Score=25.66 Aligned_cols=58 Identities=5% Similarity=-0.027 Sum_probs=36.1
Q ss_pred CCccHHHHHHHHhhCCC-C---hhh-HhhhCCCcccCCccCHHHHHHHHHhCCCChHHHHHHHHhC
Q 037691 80 PHSEFQEKMLYLDSIGV-D---FFS-LINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMC 140 (337)
Q Consensus 80 ~~~~l~~~v~fL~slG~-d---i~~-ii~~~P~lL~~s~e~l~~~v~~L~~lG~s~~~i~~ii~~~ 140 (337)
+.+.++.+|+.|.+.|+ | .+. .+...-..-.+. -....+-|+..|++.+.|...+...
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G---~~~I~~eL~~KGI~~~~I~~al~~~ 110 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG---PKVIKLNLSKKGIDDNIAEDALILY 110 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC---HHHHHHHHHTTTCCHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc---HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 56789999999999999 3 222 222110000112 2233457888999999998888654
No 51
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=26.21 E-value=57 Score=22.21 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHcCCC-HHHHhHHHhcCCcccccChhhhHHHHHHHHHH
Q 037691 215 EDKLIPRLQYFQKIGFS-KREATAMFRRFPQLFNYSVKDNYERKLNYFVV 263 (337)
Q Consensus 215 ~~~l~~kv~fL~~lG~s-~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~ 263 (337)
++..+.+++-|.++||+ ++.+.+.++.. ..+++.-++||..
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~~~--------~gnve~Ave~L~~ 55 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALRRS--------GGSVQGALDSLLN 55 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 56788899999999996 55556655531 2456666777654
No 52
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.02 E-value=56 Score=23.49 Aligned_cols=41 Identities=10% Similarity=0.253 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHcCCC-HHHHhHHHhcCCcccccChhhhHHHHHHHHHH
Q 037691 215 EDKLIPRLQYFQKIGFS-KREATAMFRRFPQLFNYSVKDNYERKLNYFVV 263 (337)
Q Consensus 215 ~~~l~~kv~fL~~lG~s-~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~ 263 (337)
+...+.+|+-|.+|||+ ++.+.+.++.. ..+++.-++||..
T Consensus 26 e~~ye~qi~qL~eMGF~dr~~~~~AL~~t--------~Gnve~Ave~L~~ 67 (74)
T 1vej_A 26 EGRYQQELEELKALGFANRDANLQALVAT--------DGDIHAAIEMLLG 67 (74)
T ss_dssp TTTSHHHHHHHHHHTCCCHHHHHHHHHHT--------TSCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 55678899999999995 56656666532 2456677778764
No 53
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.67 E-value=55 Score=22.64 Aligned_cols=39 Identities=10% Similarity=0.211 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhh
Q 037691 220 PRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGM 265 (337)
Q Consensus 220 ~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~m 265 (337)
..|+-|..+||+++++.+.++.+-. ++++.-++||.+.+
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~-------~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGG-------RSVQTACDWLFSHS 59 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTT-------SCHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-------CCHHHHHHHHHhCC
Confidence 3578888999999999988875321 25777888887543
No 54
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=24.62 E-value=2.1e+02 Score=24.51 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHcCCCHHHHhHHHhc
Q 037691 216 DKLIPRLQYFQKIGFSKREATAMFRR 241 (337)
Q Consensus 216 ~~l~~kv~fL~~lG~s~~~i~~ml~~ 241 (337)
+.-+..+.||.+-||+.+.|..++..
T Consensus 180 ~~k~K~~~~L~rrGFs~~~I~~vl~~ 205 (221)
T 3d5l_A 180 RREQKVQQGLTTKGFSSSVYEMIKDE 205 (221)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 34567788888999999998877754
No 55
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=24.62 E-value=1.5e+02 Score=22.85 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=25.5
Q ss_pred HHHHhCCCChHHHHHHHHhCccccccc-ccchhHHHHHHHHHhc
Q 037691 121 DLITSLDFAAAEFRRIVSMCPEILTSR-ASDILPVFTFLLREAK 163 (337)
Q Consensus 121 ~~L~~lG~s~~~i~~ii~~~P~iL~~~-~~~l~~~v~fL~~~lG 163 (337)
.+-+.+|++..+|..|-..+|. + .+.+...+..|++.-|
T Consensus 40 ~LAR~LGlse~dId~I~~~~p~----~l~eq~~qmL~~W~~r~G 79 (114)
T 2of5_A 40 PMVLSLGLSQTDIYRCKANHPH----NVQSQVVEAFIRWRQRFG 79 (114)
T ss_dssp HHHHTTTCCHHHHHHHHHHCSS----CHHHHHHHHHHHHHHHHG
T ss_pred HHHHHcCCCHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHC
Confidence 3556689999999999999983 2 2344455555544334
No 56
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=24.04 E-value=1.6e+02 Score=22.70 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=24.9
Q ss_pred HHHHhCCCChHHHHHHHHhCccccccc-ccchhHHHHHHHHHhc
Q 037691 121 DLITSLDFAAAEFRRIVSMCPEILTSR-ASDILPVFTFLLREAK 163 (337)
Q Consensus 121 ~~L~~lG~s~~~i~~ii~~~P~iL~~~-~~~l~~~v~fL~~~lG 163 (337)
.+-+.+|++..+|..|-..+|. + .+.+...+..|++.-|
T Consensus 40 ~LAR~LGlse~dId~I~~~~p~----dl~eq~~qmL~~W~~r~G 79 (115)
T 2o71_A 40 PMVLSLGLSQTDIYRCKANHPH----NVQSQVVEAFIRWRQRFG 79 (115)
T ss_dssp HHHHHTTCCHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHG
T ss_pred HHHHHcCCCHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHC
Confidence 3456689999999999988883 2 2344445555544334
No 57
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=23.64 E-value=59 Score=25.22 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=26.6
Q ss_pred cCCccCHHHHHHHHHhCCCChHHHHHHHHhCcc
Q 037691 110 SASLNDIKSTVDLITSLDFAAAEFRRIVSMCPE 142 (337)
Q Consensus 110 ~~s~e~l~~~v~~L~~lG~s~~~i~~ii~~~P~ 142 (337)
.++.++....++.|.+.|+.+..+++|..-+|.
T Consensus 46 k~~~e~a~~l~e~L~~~~l~~~~~a~IanL~P~ 78 (113)
T 4ayb_F 46 KCDAESAQKVVEELSSIISREDVRAVLASICPI 78 (113)
T ss_dssp SSCHHHHHHHHHHHHTTCCCHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 345566777888888899999889999988884
No 58
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=23.36 E-value=64 Score=22.20 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHh
Q 037691 116 IKSTVDLITSLDFAAAEFRRIVSM 139 (337)
Q Consensus 116 l~~~v~~L~~lG~s~~~i~~ii~~ 139 (337)
....++.|.++|++..++.+++..
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~ 40 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLD 40 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 456777888888888888777765
No 59
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=23.33 E-value=1.1e+02 Score=23.42 Aligned_cols=13 Identities=23% Similarity=0.690 Sum_probs=9.2
Q ss_pred HHHHHHHhhCCCC
Q 037691 85 QEKMLYLDSIGVD 97 (337)
Q Consensus 85 ~~~v~fL~slG~d 97 (337)
....++|.+.|++
T Consensus 19 ~ka~~~L~~~gi~ 31 (120)
T 2kok_A 19 KKARIWLEDHGID 31 (120)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCc
Confidence 4456688888884
No 60
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.13 E-value=1.4e+02 Score=21.95 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=19.3
Q ss_pred HHHHHHHhhCCCChhhHhhhCCCcccCCccCHHHHHHHHHh
Q 037691 85 QEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITS 125 (337)
Q Consensus 85 ~~~v~fL~slG~di~~ii~~~P~lL~~s~e~l~~~v~~L~~ 125 (337)
++.|+-|.++||+-..++.. |...-.+++..++||.+
T Consensus 30 ee~I~~Lv~MGF~~~~A~~A----L~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAA----LRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHH----HHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH----HHHcCCCHHHHHHHHHh
Confidence 55666777777753332221 11111356677777665
No 61
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.07 E-value=1.5e+02 Score=20.23 Aligned_cols=46 Identities=15% Similarity=0.118 Sum_probs=30.5
Q ss_pred HHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhCCChhHH
Q 037691 225 FQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKEL 272 (337)
Q Consensus 225 L~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~~~~~I 272 (337)
-+..|++...|.+++...+.-...+ .....|+.-..+++|+.+...
T Consensus 7 A~~aGVS~sTVSrvLng~~~~~~vs--~et~~rI~~aa~~lgY~pn~~ 52 (65)
T 1uxc_A 7 ARLAGVSRTTASYVINGKAKQYRVS--DKTVEKVMAVVREHNYHPNAV 52 (65)
T ss_dssp HHHHTSCHHHHHHHHHTCTTTTTCT--THHHHHHHHHHHHHTCCCC--
T ss_pred HHHHCcCHHHHHHHHcCCCCCCCCC--HHHHHHHHHHHHHhCCCccHH
Confidence 3478999999999998877222345 345555555567899876543
No 62
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.48 E-value=47 Score=22.26 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHcCCCHHH-HhHHHhcCCcccccChhhhHHHHHHHHHH
Q 037691 216 DKLIPRLQYFQKIGFSKRE-ATAMFRRFPQLFNYSVKDNYERKLNYFVV 263 (337)
Q Consensus 216 ~~l~~kv~fL~~lG~s~~~-i~~ml~~~P~IL~~sle~~L~~k~~fL~~ 263 (337)
...+.+++-|.++||++++ ..+.+... ..+++.-+++|..
T Consensus 7 ~~~~~~l~~L~~MGF~d~~~n~~AL~~~--------~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 7 GHFQVQLEQLRSMGFLNREANLQALIAT--------GGDVDAAVEKLRQ 47 (54)
T ss_dssp CSSHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCcHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 4567889999999997765 35555431 2456666777764
No 63
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=21.75 E-value=78 Score=23.15 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCCHHHHhHHHhc
Q 037691 218 LIPRLQYFQKIGFSKREATAMFRR 241 (337)
Q Consensus 218 l~~kv~fL~~lG~s~~~i~~ml~~ 241 (337)
....|.+|+.+|||-++|..++..
T Consensus 5 rL~~I~~lr~lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 5 RLKFIRHARQLGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHH
Confidence 345688889999999999998863
No 64
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.73 E-value=74 Score=23.41 Aligned_cols=38 Identities=11% Similarity=0.265 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHh
Q 037691 219 IPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVG 264 (337)
Q Consensus 219 ~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~ 264 (337)
.+.|+-|.++||+++++.+.+... ...++.-++||..+
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~--------n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSN--------NMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHC
Confidence 678999999999999998877432 24578888898754
No 65
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=20.48 E-value=1.8e+02 Score=19.93 Aligned_cols=39 Identities=8% Similarity=0.110 Sum_probs=25.9
Q ss_pred CChHHHHHHHHhCcccccccccchhHHHHHHHHHhcCChhHHHHHHHh
Q 037691 128 FAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISR 175 (337)
Q Consensus 128 ~s~~~i~~ii~~~P~iL~~~~~~l~~~v~fL~~~lGvs~~~v~~li~~ 175 (337)
+++.++-..|...-.++.- +++.+.+|+++++|..++++
T Consensus 10 ~~e~~lL~yIr~sGGildI---------~~~a~kygV~kdeV~~~Lrr 48 (59)
T 2xvc_A 10 ITERELLDYIVNNGGFLDI---------EHFSKVYGVEKQEVVKLLEA 48 (59)
T ss_dssp CCHHHHHHHHHHTTSEEEH---------HHHHHHHCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCEEeH---------HHHHHHhCCCHHHHHHHHHH
Confidence 4555666666666555543 45556789999888888764
No 66
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.11 E-value=70 Score=24.64 Aligned_cols=40 Identities=13% Similarity=0.254 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHc-CCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHH
Q 037691 216 DKLIPRLQYFQKI-GFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVV 263 (337)
Q Consensus 216 ~~l~~kv~fL~~l-G~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~ 263 (337)
..++++|+.|.++ ||+++++...|..+= -.+..-+.+|.+
T Consensus 37 ~d~eekVk~L~EmtG~seeeAr~AL~~~n--------gDl~~AI~~Lle 77 (104)
T 1wj7_A 37 ADFEEKVKQLIDITGKNQDECVIALHDCN--------GDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHT--------SCHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHcC--------CCHHHHHHHHHh
Confidence 4578899999988 999999998876532 245556677764
No 67
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=20.02 E-value=85 Score=22.98 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhC
Q 037691 219 IPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMG 266 (337)
Q Consensus 219 ~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG 266 (337)
...|+-|..+||+++.+.+.+... .+ .+++.-++||...++
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t-----~n--~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINT-----SN--AGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT-----TT--CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH-----cC--CCHHHHHHHHHhCCC
Confidence 456888899999999999887642 11 357788899987654
Done!